@jbrowse/plugin-linear-genome-view 2.4.0 → 2.4.2

package/dist/index.d.ts

@@ -1,11 +1,6 @@
 /// <reference types="react" />
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
-import { BaseLinearDisplay, BaseLinearDisplayComponent, BlockModel, BlockMsg, baseLinearDisplayConfigSchema } from './BaseLinearDisplay';
-import { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
-import { LinearGenomeViewModel, LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
-import { renderToSvg, totalHeight, SVGTracks, SVGRuler } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
-import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory } from './LinearBasicDisplay';
 export default class LinearGenomeViewPlugin extends Plugin {
     name: string;
     exports: {
@@ -166,10 +161,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-                estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+                estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+                estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
-                readonly height: any;
+                readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
                 readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
             } & {
@@ -180,7 +175,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
                 readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-                getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+                getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
                 getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
                 searchFeatureByID(id: string): [number, number, number, number] | undefined;
                 readonly currentBytesRequested: number;
@@ -190,19 +185,16 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly maxAllowableBytes: number;
             } & {
                 setMessage(message: string): void;
+            } & {
                 afterAttach(): void;
-                estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
-                    headers?: Record<string, string> | undefined;
-                    signal?: AbortSignal | undefined;
-                    filters?: string[] | undefined;
-                }): Promise<{}>;
-                setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-                setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-                clearRegionStats(): void;
-                setHeight(displayHeight: number): any;
+                estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+                setRegionsStatsP(arg: any): void;
+                setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+                clearRegionsStats(): void;
+                setHeight(displayHeight: number): number;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
-                updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+                updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 setCurrBpPerPx(n: number): void;
                 deleteBlock(key: string): void;
@@ -216,18 +208,13 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly regionTooLargeReason: string;
             } & {
                 reload(): Promise<void>;
+            } & {
                 afterAttach(): void;
             } & {
                 regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
                 regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                contextMenuItems(): {
-                    label: string;
-                    icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-                        muiName: string;
-                    };
-                    onClick: () => void;
-                }[];
+                contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 renderProps(): any;
             } & {
                 renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
@@ -346,10 +333,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-                estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+                estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+                estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
-                readonly height: any;
+                readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
                 readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
             } & {
@@ -360,7 +347,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
                 readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-                getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+                getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
                 getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
                 searchFeatureByID(id: string): [number, number, number, number] | undefined;
                 readonly currentBytesRequested: number;
@@ -370,19 +357,16 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly maxAllowableBytes: number;
             } & {
                 setMessage(message: string): void;
+            } & {
                 afterAttach(): void;
-                estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
-                    headers?: Record<string, string> | undefined;
-                    signal?: AbortSignal | undefined;
-                    filters?: string[] | undefined;
-                }): Promise<{}>;
-                setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-                setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-                clearRegionStats(): void;
-                setHeight(displayHeight: number): any;
+                estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+                setRegionsStatsP(arg: any): void;
+                setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+                clearRegionsStats(): void;
+                setHeight(displayHeight: number): number;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
-                updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+                updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 setCurrBpPerPx(n: number): void;
                 deleteBlock(key: string): void;
@@ -396,18 +380,13 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly regionTooLargeReason: string;
             } & {
                 reload(): Promise<void>;
+            } & {
                 afterAttach(): void;
             } & {
                 regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
                 regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                contextMenuItems(): {
-                    label: string;
-                    icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-                        muiName: string;
-                    };
-                    onClick: () => void;
-                }[];
+                contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 renderProps(): any;
             } & {
                 renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
@@ -590,10 +569,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
             message: string;
             featureIdUnderMouse: string | undefined;
             contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-            estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-            estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+            estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+            estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
         } & {
-            readonly height: any;
+            readonly height: number;
             readonly blockType: "dynamicBlocks" | "staticBlocks";
             readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
         } & {
@@ -604,7 +583,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
         } & {
             readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
             readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-            getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+            getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
             getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
             searchFeatureByID(id: string): [number, number, number, number] | undefined;
             readonly currentBytesRequested: number;
@@ -614,19 +593,16 @@ export default class LinearGenomeViewPlugin extends Plugin {
             readonly maxAllowableBytes: number;
         } & {
             setMessage(message: string): void;
+        } & {
             afterAttach(): void;
-            estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
-                headers?: Record<string, string> | undefined;
-                signal?: AbortSignal | undefined;
-                filters?: string[] | undefined;
-            }): Promise<{}>;
-            setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-            setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-            clearRegionStats(): void;
-            setHeight(displayHeight: number): any;
+            estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+            setRegionsStatsP(arg: any): void;
+            setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+            clearRegionsStats(): void;
+            setHeight(displayHeight: number): number;
             resizeHeight(distance: number): number;
             setScrollTop(scrollTop: number): void;
-            updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+            updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
             addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
             setCurrBpPerPx(n: number): void;
             deleteBlock(key: string): void;
@@ -640,18 +616,13 @@ export default class LinearGenomeViewPlugin extends Plugin {
             readonly regionTooLargeReason: string;
         } & {
             reload(): Promise<void>;
+        } & {
             afterAttach(): void;
         } & {
             regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
             regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
             trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-            contextMenuItems(): {
-                label: string;
-                icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-                    muiName: string;
-                };
-                onClick: () => void;
-            }[];
+            contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
             renderProps(): any;
         } & {
             renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
@@ -797,9 +768,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -826,7 +797,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -989,9 +960,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1018,7 +989,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1191,9 +1162,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1220,7 +1191,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1383,9 +1354,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1412,7 +1383,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1585,9 +1556,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1614,7 +1585,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1777,9 +1748,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1806,7 +1777,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1908,6 +1879,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
     install(pluginManager: PluginManager): void;
     configure(pluginManager: PluginManager): void;
 }
-export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, totalHeight, SVGTracks, SVGRuler, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, BlockMsg, };
-export type { LinearGenomeViewModel, LinearGenomeViewStateModel, BlockModel };
-export type { BaseLinearDisplayModel } from './BaseLinearDisplay';
+export type { BaseLinearDisplayModel, BlockModel } from './BaseLinearDisplay';
+export { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
+export { BlockMsg, baseLinearDisplayConfigSchema, BaseLinearDisplayComponent, BaseLinearDisplay, } from './BaseLinearDisplay';
+export { type LinearGenomeViewModel, RefNameAutocomplete, type LinearGenomeViewStateModel, SearchBox, } from './LinearGenomeView';
+export { renderToSvg, SVGTracks, totalHeight, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
+export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';

package/dist/index.js

@@ -26,30 +26,16 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.BlockMsg = exports.SearchBox = exports.RefNameAutocomplete = exports.BaseLinearDisplay = exports.BaseLinearDisplayComponent = exports.SVGRuler = exports.SVGTracks = exports.totalHeight = exports.renderToSvg = exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.linearBareDisplayConfigSchemaFactory = exports.baseLinearDisplayConfigSchema = void 0;
+exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.SVGRuler = exports.totalHeight = exports.SVGTracks = exports.renderToSvg = exports.SearchBox = exports.RefNameAutocomplete = exports.BaseLinearDisplay = exports.BaseLinearDisplayComponent = exports.baseLinearDisplayConfigSchema = exports.BlockMsg = exports.linearBareDisplayConfigSchemaFactory = void 0;
 const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
 const util_1 = require("@jbrowse/core/util");
 // icons
 const LineStyle_1 = __importDefault(require("@mui/icons-material/LineStyle"));
 // locals
 const BaseLinearDisplay_1 = require("./BaseLinearDisplay");
-Object.defineProperty(exports, "BaseLinearDisplay", { enumerable: true, get: function () { return BaseLinearDisplay_1.BaseLinearDisplay; } });
-Object.defineProperty(exports, "BaseLinearDisplayComponent", { enumerable: true, get: function () { return BaseLinearDisplay_1.BaseLinearDisplayComponent; } });
-Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return BaseLinearDisplay_1.BlockMsg; } });
-Object.defineProperty(exports, "baseLinearDisplayConfigSchema", { enumerable: true, get: function () { return BaseLinearDisplay_1.baseLinearDisplayConfigSchema; } });
-const LinearBareDisplay_1 = __importStar(require("./LinearBareDisplay"));
-Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBareDisplay_1.configSchemaFactory; } });
+const LinearBareDisplay_1 = __importDefault(require("./LinearBareDisplay"));
 const LinearGenomeView_1 = __importStar(require("./LinearGenomeView"));
-Object.defineProperty(exports, "RefNameAutocomplete", { enumerable: true, get: function () { return LinearGenomeView_1.RefNameAutocomplete; } });
-Object.defineProperty(exports, "SearchBox", { enumerable: true, get: function () { return LinearGenomeView_1.SearchBox; } });
-const SVGLinearGenomeView_1 = require("./LinearGenomeView/svgcomponents/SVGLinearGenomeView");
-Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return SVGLinearGenomeView_1.renderToSvg; } });
-Object.defineProperty(exports, "totalHeight", { enumerable: true, get: function () { return SVGLinearGenomeView_1.totalHeight; } });
-Object.defineProperty(exports, "SVGTracks", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGTracks; } });
-Object.defineProperty(exports, "SVGRuler", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGRuler; } });
-const LinearBasicDisplay_1 = __importStar(require("./LinearBasicDisplay"));
-Object.defineProperty(exports, "linearBasicDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBasicDisplay_1.configSchema; } });
-Object.defineProperty(exports, "linearBasicDisplayModelFactory", { enumerable: true, get: function () { return LinearBasicDisplay_1.modelFactory; } });
+const LinearBasicDisplay_1 = __importDefault(require("./LinearBasicDisplay"));
 const FeatureTrack_1 = __importDefault(require("./FeatureTrack"));
 const BasicTrack_1 = __importDefault(require("./BasicTrack"));
 const LaunchLinearGenomeView_1 = __importDefault(require("./LaunchLinearGenomeView"));
@@ -87,4 +73,22 @@ class LinearGenomeViewPlugin extends Plugin_1.default {
     }
 }
 exports.default = LinearGenomeViewPlugin;
+var LinearBareDisplay_2 = require("./LinearBareDisplay");
+Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBareDisplay_2.configSchemaFactory; } });
+var BaseLinearDisplay_2 = require("./BaseLinearDisplay");
+Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return BaseLinearDisplay_2.BlockMsg; } });
+Object.defineProperty(exports, "baseLinearDisplayConfigSchema", { enumerable: true, get: function () { return BaseLinearDisplay_2.baseLinearDisplayConfigSchema; } });
+Object.defineProperty(exports, "BaseLinearDisplayComponent", { enumerable: true, get: function () { return BaseLinearDisplay_2.BaseLinearDisplayComponent; } });
+Object.defineProperty(exports, "BaseLinearDisplay", { enumerable: true, get: function () { return BaseLinearDisplay_2.BaseLinearDisplay; } });
+var LinearGenomeView_2 = require("./LinearGenomeView");
+Object.defineProperty(exports, "RefNameAutocomplete", { enumerable: true, get: function () { return LinearGenomeView_2.RefNameAutocomplete; } });
+Object.defineProperty(exports, "SearchBox", { enumerable: true, get: function () { return LinearGenomeView_2.SearchBox; } });
+var SVGLinearGenomeView_1 = require("./LinearGenomeView/svgcomponents/SVGLinearGenomeView");
+Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return SVGLinearGenomeView_1.renderToSvg; } });
+Object.defineProperty(exports, "SVGTracks", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGTracks; } });
+Object.defineProperty(exports, "totalHeight", { enumerable: true, get: function () { return SVGLinearGenomeView_1.totalHeight; } });
+Object.defineProperty(exports, "SVGRuler", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGRuler; } });
+var LinearBasicDisplay_2 = require("./LinearBasicDisplay");
+Object.defineProperty(exports, "linearBasicDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBasicDisplay_2.configSchema; } });
+Object.defineProperty(exports, "linearBasicDisplayModelFactory", { enumerable: true, get: function () { return LinearBasicDisplay_2.modelFactory; } });
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts

@@ -1,10 +1,9 @@
 import React from 'react';
-import Tooltip from './Tooltip';
-import BlockMsg from './BlockMsg';
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
 declare const BaseLinearDisplay: (props: {
     model: BaseLinearDisplayModel;
     children?: React.ReactNode;
 }) => JSX.Element;
 export default BaseLinearDisplay;
-export { Tooltip, BlockMsg };
+export { default as Tooltip } from './Tooltip';
+export { default as BlockMsg } from './BlockMsg';

package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js

@@ -5,8 +5,6 @@ import { makeStyles } from 'tss-react/mui';
 import { getConf } from '@jbrowse/core/configuration';
 import { Menu } from '@jbrowse/core/ui';
 // locals
-import Tooltip from './Tooltip';
-import BlockMsg from './BlockMsg';
 import LinearBlocks from './LinearBlocks';
 const useStyles = makeStyles()({
     display: {
@@ -65,5 +63,6 @@ const BaseLinearDisplay = observer(function (props) {
                 : undefined, style: { zIndex: theme.zIndex.tooltip }, menuItems: contextMenuItems() })));
 });
 export default BaseLinearDisplay;
-export { Tooltip, BlockMsg };
+export { default as Tooltip } from './Tooltip';
+export { default as BlockMsg } from './BlockMsg';
 //# sourceMappingURL=BaseLinearDisplay.js.map

package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js.map

@@ -1 +1 @@
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package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts

@@ -1,9 +1,7 @@
 /// <reference types="react" />
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
 declare const useStyles: (params: void, styleOverrides?: {
-    props: {
-        classes?: Record<string, string> | undefined;
-    } & Record<string, unknown>;
+    props: any;
     ownerState?: Record<string, unknown> | undefined;
 } | undefined) => {
     classes: Record<"linearBlocks" | "heightOverflowed", string>;

package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js

@@ -1,4 +1,4 @@
-import React, { useEffect, useState } from 'react';
+import React from 'react';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { getParent } from 'mobx-state-tree';
@@ -20,40 +20,28 @@ const useStyles = makeStyles()(theme => {
 });
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
 const LoadingMessage = observer(({ model }) => {
-    // only show the loading message after 300ms to prevent excessive flickering
-    const [shown, setShown] = useState(false);
     const { classes } = useStyles();
-    useEffect(() => {
-        let killed = false;
-        const timeout = setTimeout(() => {
-            if (!killed) {
-                setShown(true);
-            }
-        }, 300);
-        return () => {
-            clearTimeout(timeout);
-            killed = true;
-        };
-    }, []);
     const { status: blockStatus } = model;
     // eslint-disable-next-line @typescript-eslint/no-explicit-any
     const { message: displayStatus } = getParent(model, 2);
     const status = displayStatus || blockStatus;
-    return (React.createElement(React.Fragment, null, shown ? (React.createElement("div", { className: classes.loading },
-        React.createElement(LoadingEllipses, { message: status }))) : null));
+    return (React.createElement("div", { className: classes.loading },
+        React.createElement(LoadingEllipses, { message: status })));
 });
 const ServerSideRenderedBlockContent = observer(function ({ model, }) {
     if (model.error) {
         return (React.createElement(BlockMsg, { message: `${model.error}`, severity: "error", buttonText: "reload", icon: React.createElement(RefreshIcon, null), action: model.reload }));
     }
-    if (model.message) {
+    else if (model.message) {
         // the message can be a fully rendered react component, e.g. the region too large message
         return React.isValidElement(model.message) ? (model.message) : (React.createElement(BlockMsg, { message: `${model.message}`, severity: "info" }));
     }
-    if (!model.filled) {
+    else if (!model.filled) {
         return React.createElement(LoadingMessage, { model: model });
     }
-    return model.reactElement;
+    else {
+        return model.reactElement;
+    }
 });
 export default ServerSideRenderedBlockContent;
 //# sourceMappingURL=ServerSideRenderedBlockContent.js.map

package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map

@@ -1 +1 @@
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package/esm/BaseLinearDisplay/components/TooLargeMessage.d.ts

@@ -3,8 +3,8 @@ import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
 declare function TooLargeMessage({ model, }: {
     model: {
         regionTooLargeReason: string;
-        estimatedRegionStats?: Stats;
-        updateStatsLimit: (s: Stats) => void;
+        estimatedRegionsStats?: Stats;
+        updateStatsLimit: (s?: Stats) => void;
         reload: () => void;
     };
 }): JSX.Element;

package/esm/BaseLinearDisplay/components/TooLargeMessage.js

@@ -1,16 +1,12 @@
 import React from 'react';
+// locals
 import BlockMsg from '../components/BlockMsg';
 function TooLargeMessage({ model, }) {
     const { regionTooLargeReason } = model;
     return (React.createElement(BlockMsg, { severity: "warning", action: () => {
-            if (!model.estimatedRegionStats) {
-                console.error('No global stats?');
-            }
-            else {
-                model.updateStatsLimit(model.estimatedRegionStats);
-                model.reload();
-            }
-        }, buttonText: "Force load", message: `${regionTooLargeReason ? regionTooLargeReason + '. ' : ''}
+            model.updateStatsLimit(model.estimatedRegionsStats);
+            model.reload();
+        }, buttonText: "Force load", message: `${regionTooLargeReason ? `${regionTooLargeReason}. ` : ''}
       Zoom in to see features or force load (may be slow).` }));
 }
 export default TooLargeMessage;

package/esm/BaseLinearDisplay/components/TooLargeMessage.js.map

@@ -1 +1 @@
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