@jbrowse/plugin-linear-genome-view 2.4.0 → 2.4.2

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js

@@ -41,24 +41,7 @@ const MenuOpen_1 = __importDefault(require("@mui/icons-material/MenuOpen"));
 const BaseLinearDisplay_1 = require("../components/BaseLinearDisplay");
 const TooLargeMessage_1 = __importDefault(require("../components/TooLargeMessage"));
 const serverSideRenderedBlock_1 = __importStar(require("./serverSideRenderedBlock"));
-// stabilize clipid under test for snapshot
-function getId(id, index) {
-    const isJest = typeof jest === 'undefined';
-    return `clip-${isJest ? id : 'jest'}-${index}`;
-}
-function getDisplayStr(totalBytes) {
-    let displayBp;
-    if (Math.floor(totalBytes / 1000000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
-    }
-    else if (Math.floor(totalBytes / 1000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
-    }
-    else {
-        displayBp = `${Math.floor(totalBytes)} bytes`;
-    }
-    return displayBp;
-}
+const util_2 = require("./util");
 const minDisplayHeight = 20;
 /**
  * #stateModel BaseLinearDisplay
@@ -91,8 +74,8 @@ function stateModelFactory() {
         message: '',
         featureIdUnderMouse: undefined,
         contextMenuFeature: undefined,
-        estimatedRegionStatsP: undefined,
-        estimatedRegionStats: undefined,
+        estimatedRegionsStatsP: undefined,
+        estimatedRegionsStats: undefined,
     }))
         .views(self => ({
         get height() {
@@ -165,7 +148,7 @@ function stateModelFactory() {
         get features() {
             const featureMaps = [];
             for (const block of self.blockState.values()) {
-                if (block && block.features) {
+                if (block === null || block === void 0 ? void 0 : block.features) {
                     featureMaps.push(block.features);
                 }
             }
@@ -211,7 +194,7 @@ function stateModelFactory() {
          */
         get currentBytesRequested() {
             var _a;
-            return ((_a = self.estimatedRegionStats) === null || _a === void 0 ? void 0 : _a.bytes) || 0;
+            return ((_a = self.estimatedRegionsStats) === null || _a === void 0 ? void 0 : _a.bytes) || 0;
         },
         /**
          * #getter
@@ -219,7 +202,7 @@ function stateModelFactory() {
         get currentFeatureScreenDensity() {
             var _a;
             const view = (0, util_1.getContainingView)(self);
-            return (((_a = self.estimatedRegionStats) === null || _a === void 0 ? void 0 : _a.featureDensity) || 0) * view.bpPerPx;
+            return (((_a = self.estimatedRegionsStats) === null || _a === void 0 ? void 0 : _a.featureDensity) || 0) * view.bpPerPx;
         },
         /**
          * #getter
@@ -231,7 +214,7 @@ function stateModelFactory() {
          * #getter
          */
         get estimatedStatsReady() {
-            return !!self.estimatedRegionStats;
+            return !!self.estimatedRegionsStats || !!self.userBpPerPxLimit;
         },
         /**
          * #getter
@@ -239,7 +222,7 @@ function stateModelFactory() {
         get maxAllowableBytes() {
             var _a;
             return (self.userByteSizeLimit ||
-                ((_a = self.estimatedRegionStats) === null || _a === void 0 ? void 0 : _a.fetchSizeLimit) ||
+                ((_a = self.estimatedRegionsStats) === null || _a === void 0 ? void 0 : _a.fetchSizeLimit) ||
                 (0, configuration_1.getConf)(self, 'fetchSizeLimit'));
         },
     }))
@@ -250,11 +233,13 @@ function stateModelFactory() {
         setMessage(message) {
             self.message = message;
         },
+    }))
+        .actions(self => ({
         afterAttach() {
             // watch the parent's blocks to update our block state when they change,
             // then we recreate the blocks on our own model (creating and deleting to
             // match the parent blocks)
-            const blockWatchDisposer = (0, mobx_1.autorun)(() => {
+            (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
                 const blocksPresent = {};
                 const view = (0, util_1.getContainingView)(self);
                 if (view.initialized) {
@@ -270,72 +255,45 @@ function stateModelFactory() {
                         }
                     });
                 }
-            });
-            (0, mobx_state_tree_1.addDisposer)(self, blockWatchDisposer);
+            }));
         },
         /**
          * #action
          */
-        estimateRegionsStats(regions, opts) {
-            if (self.estimatedRegionStatsP) {
-                return self.estimatedRegionStatsP;
-            }
-            const { rpcManager } = (0, util_1.getSession)(self);
-            const { adapterConfig } = self;
-            if (!adapterConfig) {
-                // A track extending the base track might not have an adapter config
-                // e.g. Apollo tracks don't use adapters
-                return Promise.resolve({});
+        async estimateRegionsStats() {
+            if (!self.estimatedRegionsStatsP) {
+                self.estimatedRegionsStatsP = (0, util_2.estimateRegionsStatsPre)(self).catch(e => {
+                    this.setRegionsStatsP(undefined);
+                    throw e;
+                });
             }
-            const sessionId = (0, tracks_1.getRpcSessionId)(self);
-            const params = {
-                sessionId,
-                regions,
-                adapterConfig,
-                statusCallback: (message) => {
-                    if ((0, mobx_state_tree_1.isAlive)(self)) {
-                        this.setMessage(message);
-                    }
-                },
-                ...opts,
-            };
-            self.estimatedRegionStatsP = rpcManager
-                .call(sessionId, 'CoreEstimateRegionStats', params)
-                .catch(e => {
-                this.setRegionStatsP(undefined);
-                throw e;
-            });
-            return self.estimatedRegionStatsP;
+            return self.estimatedRegionsStatsP;
         },
         /**
          * #action
          */
-        setRegionStatsP(p) {
-            self.estimatedRegionStatsP = p;
+        setRegionsStatsP(arg) {
+            self.estimatedRegionsStatsP = arg;
         },
         /**
          * #action
          */
-        setRegionStats(estimatedRegionStats) {
-            self.estimatedRegionStats = estimatedRegionStats;
+        setRegionsStats(estimatedRegionsStats) {
+            self.estimatedRegionsStats = estimatedRegionsStats;
         },
         /**
          * #action
          */
-        clearRegionStats() {
-            self.estimatedRegionStatsP = undefined;
-            self.estimatedRegionStats = undefined;
+        clearRegionsStats() {
+            self.estimatedRegionsStatsP = undefined;
+            self.estimatedRegionsStats = undefined;
         },
         /**
          * #action
          */
         setHeight(displayHeight) {
-            if (displayHeight > minDisplayHeight) {
-                self.heightPreConfig = displayHeight;
-            }
-            else {
-                self.heightPreConfig = minDisplayHeight;
-            }
+            self.heightPreConfig =
+                displayHeight > minDisplayHeight ? displayHeight : minDisplayHeight;
             return self.height;
         },
         /**
@@ -357,7 +315,7 @@ function stateModelFactory() {
          */
         updateStatsLimit(stats) {
             const view = (0, util_1.getContainingView)(self);
-            if (stats.bytes) {
+            if (stats === null || stats === void 0 ? void 0 : stats.bytes) {
                 self.userByteSizeLimit = stats.bytes;
             }
             else {
@@ -442,11 +400,10 @@ function stateModelFactory() {
             if (!self.estimatedStatsReady || view.dynamicBlocks.totalBp < 20000) {
                 return false;
             }
-            const bpLimitOrDensity = self.userBpPerPxLimit
-                ? view.bpPerPx > self.userBpPerPxLimit
-                : self.currentFeatureScreenDensity > self.maxFeatureScreenDensity;
             return (self.currentBytesRequested > self.maxAllowableBytes ||
-                bpLimitOrDensity);
+                (self.userBpPerPxLimit
+                    ? view.bpPerPx > self.userBpPerPxLimit
+                    : self.currentFeatureScreenDensity > self.maxFeatureScreenDensity));
         },
         /**
          * #getter
@@ -457,7 +414,7 @@ function stateModelFactory() {
             const req = self.currentBytesRequested;
             const max = self.maxAllowableBytes;
             return req && req > max
-                ? `Requested too much data (${getDisplayStr(req)})`
+                ? `Requested too much data (${(0, util_2.getDisplayStr)(req)})`
                 : '';
         },
     }))
@@ -469,7 +426,6 @@ function stateModelFactory() {
              */
             async reload() {
                 self.setError();
-                const aborter = new AbortController();
                 const view = (0, util_1.getContainingView)(self);
                 // extra check for contentBlocks.length
                 // https://github.com/GMOD/jbrowse-components/issues/2694
@@ -477,68 +433,63 @@ function stateModelFactory() {
                     return;
                 }
                 try {
-                    self.estimatedRegionStatsP = self.estimateRegionsStats(view.staticBlocks.contentBlocks, { signal: aborter.signal });
-                    const estimatedRegionStats = await self.estimatedRegionStatsP;
+                    const estimatedRegionsStats = await self.estimateRegionsStats();
                     if ((0, mobx_state_tree_1.isAlive)(self)) {
-                        self.setRegionStats(estimatedRegionStats);
+                        self.setRegionsStats(estimatedRegionsStats);
                         superReload();
                     }
-                    else {
-                        return;
-                    }
                 }
                 catch (e) {
                     console.error(e);
                     self.setError(e);
                 }
             },
-            afterAttach() {
-                // this autorun performs stats estimation
-                //
-                // the chain of events calls estimateRegionsStats against the data
-                // adapter which by default uses featureDensity, but can also respond
-                // with a byte size estimate and fetch size limit (data adapter can
-                // define what is too much data)
-                (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(async () => {
-                    var _a;
-                    try {
-                        const aborter = new AbortController();
-                        const view = (0, util_1.getContainingView)(self);
-                        // extra check for contentBlocks.length
-                        // https://github.com/GMOD/jbrowse-components/issues/2694
-                        if (!view.initialized ||
-                            !view.staticBlocks.contentBlocks.length) {
-                            return;
-                        }
-                        // don't re-estimate featureDensity even if zoom level changes,
-                        // jbrowse1-style assume it's sort of representative
-                        if (((_a = self.estimatedRegionStats) === null || _a === void 0 ? void 0 : _a.featureDensity) !== undefined) {
-                            self.setCurrBpPerPx(view.bpPerPx);
-                            return;
-                        }
-                        // we estimate stats once at a given zoom level
-                        if (view.bpPerPx === self.currBpPerPx) {
-                            return;
-                        }
-                        self.clearRegionStats();
+        };
+    })
+        .actions(self => ({
+        afterAttach() {
+            // this autorun performs stats estimation
+            //
+            // the chain of events calls estimateRegionsStats against the data
+            // adapter which by default uses featureDensity, but can also respond
+            // with a byte size estimate and fetch size limit (data adapter can
+            // define what is too much data)
+            (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(async () => {
+                var _a;
+                try {
+                    const view = (0, util_1.getContainingView)(self);
+                    // extra check for contentBlocks.length
+                    // https://github.com/GMOD/jbrowse-components/issues/2694
+                    if (!view.initialized ||
+                        !view.staticBlocks.contentBlocks.length) {
+                        return;
+                    }
+                    // don't re-estimate featureDensity even if zoom level changes,
+                    // jbrowse1-style assume it's sort of representative
+                    if (((_a = self.estimatedRegionsStats) === null || _a === void 0 ? void 0 : _a.featureDensity) !== undefined) {
                         self.setCurrBpPerPx(view.bpPerPx);
-                        const statsP = self.estimateRegionsStats(view.staticBlocks.contentBlocks, { signal: aborter.signal });
-                        self.setRegionStatsP(statsP);
-                        const estimatedRegionStats = await statsP;
-                        if ((0, mobx_state_tree_1.isAlive)(self)) {
-                            self.setRegionStats(estimatedRegionStats);
-                        }
+                        return;
                     }
-                    catch (e) {
-                        if (!(0, util_1.isAbortException)(e) && (0, mobx_state_tree_1.isAlive)(self)) {
-                            console.error(e);
-                            self.setError(e);
-                        }
+                    // we estimate stats once at a given zoom level
+                    if (view.bpPerPx === self.currBpPerPx) {
+                        return;
                     }
-                }, { delay: 500 }));
-            },
-        };
-    })
+                    self.clearRegionsStats();
+                    self.setCurrBpPerPx(view.bpPerPx);
+                    const estimatedRegionsStats = await self.estimateRegionsStats();
+                    if ((0, mobx_state_tree_1.isAlive)(self)) {
+                        self.setRegionsStats(estimatedRegionsStats);
+                    }
+                }
+                catch (e) {
+                    if (!(0, util_1.isAbortException)(e) && (0, mobx_state_tree_1.isAlive)(self)) {
+                        console.error(e);
+                        self.setError(e);
+                    }
+                }
+            }));
+        },
+    }))
         .views(self => ({
         /**
          * #method
@@ -555,8 +506,7 @@ function stateModelFactory() {
          *  react node allows user to force load at current setting
          */
         regionCannotBeRendered(_region) {
-            const { regionTooLarge } = self;
-            return regionTooLarge ? react_1.default.createElement(TooLargeMessage_1.default, { model: self }) : null;
+            return self.regionTooLarge ? react_1.default.createElement(TooLargeMessage_1.default, { model: self }) : null;
         },
         /**
          * #method
@@ -568,19 +518,21 @@ function stateModelFactory() {
          * #method
          */
         contextMenuItems() {
-            return self.contextMenuFeature
-                ? [
-                    {
-                        label: 'Open feature details',
-                        icon: MenuOpen_1.default,
-                        onClick: () => {
-                            if (self.contextMenuFeature) {
-                                self.selectFeature(self.contextMenuFeature);
-                            }
+            return [
+                ...(self.contextMenuFeature
+                    ? [
+                        {
+                            label: 'Open feature details',
+                            icon: MenuOpen_1.default,
+                            onClick: () => {
+                                if (self.contextMenuFeature) {
+                                    self.selectFeature(self.contextMenuFeature);
+                                }
+                            },
                         },
-                    },
-                ]
-                : [];
+                    ]
+                    : []),
+            ];
         },
         /**
          * #method
@@ -589,7 +541,7 @@ function stateModelFactory() {
             const view = (0, util_1.getContainingView)(self);
             return {
                 ...(0, tracks_1.getParentRenderProps)(self),
-                notReady: self.currBpPerPx !== view.bpPerPx || !self.estimatedRegionStats,
+                notReady: self.currBpPerPx !== view.bpPerPx || !self.estimatedRegionsStats,
                 rpcDriverName: self.rpcDriverName,
                 displayModel: self,
                 onFeatureClick(_, featureId) {
@@ -674,7 +626,7 @@ function stateModelFactory() {
             return (react_1.default.createElement(react_1.default.Fragment, null, renderings.map(([block, rendering], index) => {
                 const { offsetPx, widthPx } = block;
                 const offset = offsetPx - viewOffsetPx;
-                const clipid = getId(id, index);
+                const clipid = (0, util_2.getId)(id, index);
                 return (react_1.default.createElement(react_1.default.Fragment, { key: `frag-${index}` },
                     react_1.default.createElement("defs", null,
                         react_1.default.createElement("clipPath", { id: clipid },
@@ -691,7 +643,7 @@ function stateModelFactory() {
         }
         // rewrite "height" from older snapshots to "heightPreConfig", this allows
         // us to maintain a height "getter" going forward
-        // @ts-ignore
+        // @ts-expect-error
         const { height, ...rest } = snap;
         return { heightPreConfig: height, ...rest };
     })

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map

@@ -1 +1 @@
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package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js

@@ -54,10 +54,9 @@ const blockState = mobx_state_tree_1.types
             self.status = message;
         },
         setLoading(abortController) {
-            if (renderInProgress !== undefined) {
-                if (!renderInProgress.signal.aborted) {
-                    renderInProgress.abort();
-                }
+            if (renderInProgress !== undefined &&
+                !renderInProgress.signal.aborted) {
+                renderInProgress.abort();
             }
             self.filled = false;
             self.message = undefined;
@@ -161,7 +160,7 @@ function renderBlockData(self, optDisplay) {
         const assemblyNames = (0, tracks_1.getTrackAssemblyNames)(parentTrack);
         const regionAsm = self.region.assemblyName;
         if (!assemblyNames.includes(regionAsm) &&
-            !assemblyNames.find(name => { var _a; return (_a = assemblyManager.get(name)) === null || _a === void 0 ? void 0 : _a.hasName(regionAsm); })) {
+            !assemblyNames.some(name => { var _a; return (_a = assemblyManager.get(name)) === null || _a === void 0 ? void 0 : _a.hasName(regionAsm); })) {
             throw new Error(`region assembly (${regionAsm}) does not match track assemblies (${assemblyNames})`);
         }
         const renderProps = display.renderProps();

package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"serverSideRenderedBlock.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/serverSideRenderedBlock.ts"],"names":[],"mappings":";;;;;;AAEA,qDAOwB;AACxB,+DAA4D;AAC5D,6CAQ2B;AAC3B,sDAAqD;AACrD,oDAGiC;AAEjC,sDAGkC;AAElC,SAAS;AACT,kHAAyF;AAEzF,oEAAoE;AACpE,MAAM,UAAU,GAAG,uBAAK;KACrB,KAAK,CAAC,YAAY,EAAE;IACnB,GAAG,EAAE,uBAAK,CAAC,MAAM;IACjB,MAAM,EAAE,YAAM;IACd,UAAU,EAAE,CAAC;IACb,0BAA0B,EAAE,KAAK;IACjC,2BAA2B,EAAE,KAAK;CACnC,CAAC;IACF,yFAAyF;KACxF,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;IACf,gBAAgB,EAAE,SAAwC;IAC1D,MAAM,EAAE,KAAK;IACb,YAAY,EAAE,SAA2C;IACzD,QAAQ,EAAE,SAA6C;IACvD,MAAM,EAAE,SAAgB;IACxB,MAAM,EAAE,EAAE;IACV,KAAK,EAAE,SAAoB;IAC3B,OAAO,EAAE,SAA+B;IACxC,gBAAgB,EAAE,KAAK;IACvB,cAAc,EAAE,wCAA8B;IAC9C,WAAW,EAAE,SAAgB;CAC9B,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE;IACd,IAAI,gBAA6C,CAAA;IACjD,OAAO;QACL,QAAQ;YACN,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,UAAU,GAAG,CAAC,CAAA;QACvC,CAAC;QACD,WAAW;YACT,MAAM,OAAO,GAAG,IAAA,2BAAoB,EAAC,IAAI,CAAC,CAAA;YAC1C,IAAA,4BAAqB,EACnB,IAAW,EACX,eAAe,EACf,iBAAiB,EAAE,qCAAqC;YACxD;gBACE,IAAI,EAAE,GAAG,OAAO,CAAC,EAAE,IAAI,IAAA,wBAAiB,EAAC,IAAI,CAAC,MAAM,CAAC,YAAY;gBACjE,KAAK,EAAE,OAAO,CAAC,WAAW;gBAC1B,eAAe,EAAE,IAAI;aACtB,EACD,IAAI,CAAC,UAAU,EACf,IAAI,CAAC,WAAW,EAChB,IAAI,CAAC,QAAQ,CACd,CAAA;QACH,CAAC;QACD,SAAS,CAAC,OAAe;YACvB,IAAI,CAAC,MAAM,GAAG,OAAO,CAAA;QACvB,CAAC;QACD,UAAU,CAAC,eAAgC;YACzC,IACE,gBAAgB,KAAK,SAAS;gBAC9B,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAChC;gBACA,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,eAAe,CAAA;QACpC,CAAC;QACD,UAAU,CAAC,WAAmB;YAC5B,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,WAAW,CAAA;YAC1B,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,SAAS,CAAA;QAC9B,CAAC;QACD,WAAW,CACT,KAQa;YAEb,IAAI,CAAC,KAAK,EAAE;gBACV,OAAM;aACP;YACD,MAAM,EACJ,YAAY,EACZ,QAAQ,EACR,MAAM,EACN,gBAAgB,EAChB,WAAW,GACZ,GAAG,KAAK,CAAA;YACT,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;YAClB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA;YAChC,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;YACxB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;YACpB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,gBAAgB,CAAA;YACxC,IAAI,CAAC,WAAW,GAAG,WAAW,CAAA;YAC9B,gBAAgB,GAAG,SAAS,CAAA;QAC9B,CAAC;QACD,QAAQ,CAAC,KAAc;YACrB,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;YACpB,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,uCAAuC;YACvC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;YAClB,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,SAAS,CAAA;YAC5B,IAAI,IAAA,wBAAgB,EAAC,KAAc,CAAC,EAAE;gBACpC,IAAI,CAAC,MAAM,EAAE,CAAA;aACd;QACH,CAAC;QACD,MAAM;YACJ,IAAI,CAAC,gBAAgB,GAAG,SAAS,CAAA;YACjC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,cAAc,GAAG,wCAA8B,CAAA;YACpD,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,IAAA,2BAAS,EAAM,IAAI,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,CAAA;QAClC,CAAC;QACD,aAAa;YACX,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,MAAM,OAAO,GAAG,IAAA,2BAAoB,EAAC,IAAI,CAAC,CAAA;YAC1C,MAAM,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;YACvC,MAAM,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;YAChC,MAAM,EAAE,UAAU,EAAE,GAAG,eAAe,CAAC,IAAA,sBAAI,EAAC,IAAI,CAAC,CAAC,CAAA;YAClD,iEAAiE;YACjE,IAAI,UAAU,EAAE;gBACd,YAAY;qBACT,qBAAqB,CACpB,UAAU,EACV,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC,CACvC;qBACA,KAAK,CAAC,CAAC,CAAQ,EAAE,EAAE;oBAClB,kEAAkE;oBAClE,OAAO,CAAC,IAAI,CAAC,8BAA8B,EAAE,CAAC,CAAC,CAAA;gBACjD,CAAC,CAAC,CAAA;aACL;QACH,CAAC;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEJ,kBAAe,UAAU,CAAA;AAIzB,2EAA2E;AAC3E,mDAAmD;AACnD,SAAgB,eAAe,CAC7B,IAAgB,EAChB,UAAiC;IAEjC,IAAI;QACF,MAAM,OAAO,GAAG,UAAU,IAAK,IAAA,2BAAoB,EAAC,IAAI,CAAS,CAAA;QACjE,MAAM,EAAE,eAAe,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,OAAO,CAAC,CAAA;QAC3D,MAAM,EAAE,aAAa,EAAE,YAAY,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QACnE,MAAM,aAAa,GAAG,IAAA,8BAAqB,EAAC,WAAW,CAAC,CAAA;QACxD,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;QAC1C,IACE,CAAC,aAAa,CAAC,QAAQ,CAAC,SAAS,CAAC;YAClC,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,WAAC,OAAA,MAAA,eAAe,CAAC,GAAG,CAAC,IAAI,CAAC,0CAAE,OAAO,CAAC,SAAS,CAAC,CAAA,EAAA,CAAC,EAC1E;YACA,MAAM,IAA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package/dist/BaseLinearDisplay/models/util.d.ts

@@ -1,3 +1,5 @@
+import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { IAnyStateTreeNode } from 'mobx-state-tree';
 export interface RenderProps {
     rendererType: any;
     renderArgs: {
@@ -16,3 +18,5 @@ export interface ErrorProps {
     displayError: string;
 }
 export declare function getDisplayStr(totalBytes: number): string;
+export declare function getId(id: string, index: number): string;
+export declare function estimateRegionsStatsPre(self: IAnyStateTreeNode): Promise<Stats>;

package/dist/BaseLinearDisplay/models/util.js

@@ -1,13 +1,16 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getDisplayStr = void 0;
+exports.estimateRegionsStatsPre = exports.getId = exports.getDisplayStr = void 0;
+const util_1 = require("@jbrowse/core/util");
+const tracks_1 = require("@jbrowse/core/util/tracks");
+const mobx_state_tree_1 = require("mobx-state-tree");
 function getDisplayStr(totalBytes) {
     let displayBp;
     if (Math.floor(totalBytes / 1000000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
+        displayBp = `${Number.parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
     }
     else if (Math.floor(totalBytes / 1000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
+        displayBp = `${Number.parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
     }
     else {
         displayBp = `${Math.floor(totalBytes)} bytes`;
@@ -15,4 +18,33 @@ function getDisplayStr(totalBytes) {
     return displayBp;
 }
 exports.getDisplayStr = getDisplayStr;
+// stabilize clipid under test for snapshot
+function getId(id, index) {
+    const isJest = typeof jest === 'undefined';
+    return `clip-${isJest ? id : 'jest'}-${index}`;
+}
+exports.getId = getId;
+async function estimateRegionsStatsPre(self) {
+    const view = (0, util_1.getContainingView)(self);
+    const regions = view.staticBlocks.contentBlocks;
+    const { rpcManager } = (0, util_1.getSession)(self);
+    const { adapterConfig } = self;
+    if (!adapterConfig) {
+        // A track extending the base track might not have an adapter config
+        // e.g. Apollo tracks don't use adapters
+        return {};
+    }
+    const sessionId = (0, tracks_1.getRpcSessionId)(self);
+    return rpcManager.call(sessionId, 'CoreEstimateRegionStats', {
+        sessionId,
+        regions,
+        adapterConfig,
+        statusCallback: (message) => {
+            if ((0, mobx_state_tree_1.isAlive)(self)) {
+                self.setMessage(message);
+            }
+        },
+    });
+}
+exports.estimateRegionsStatsPre = estimateRegionsStatsPre;
 //# sourceMappingURL=util.js.map

package/dist/BaseLinearDisplay/models/util.js.map

@@ -1 +1 @@
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+{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/util.ts"],"names":[],"mappings":";;;AACA,6CAAkE;AAClE,sDAA2D;AAC3D,qDAA4D;AAgB5D,SAAgB,aAAa,CAAC,UAAkB;IAC9C,IAAI,SAAS,CAAA;IACb,IAAI,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,OAAO,CAAC,GAAG,CAAC,EAAE;QACxC,SAAS,GAAG,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,UAAU,GAAG,OAAO,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;KAC7E;SAAM,IAAI,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE;QAC5C,SAAS,GAAG,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,UAAU,GAAG,IAAI,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;KAC1E;SAAM;QACL,SAAS,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,QAAQ,CAAA;KAC9C;IACD,OAAO,SAAS,CAAA;AAClB,CAAC;AAVD,sCAUC;AAED,2CAA2C;AAC3C,SAAgB,KAAK,CAAC,EAAU,EAAE,KAAa;IAC7C,MAAM,MAAM,GAAG,OAAO,IAAI,KAAK,WAAW,CAAA;IAC1C,OAAO,QAAQ,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,IAAI,KAAK,EAAE,CAAA;AAChD,CAAC;AAHD,sBAGC;AAEM,KAAK,UAAU,uBAAuB,CAAC,IAAuB;IACnE,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,IAAI,CAA0B,CAAA;IAC7D,MAAM,OAAO,GAAG,IAAI,CAAC,YAAY,CAAC,aAAa,CAAA;IAE/C,MAAM,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;IACvC,MAAM,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;IAC9B,IAAI,CAAC,aAAa,EAAE;QAClB,oEAAoE;QACpE,wCAAwC;QACxC,OAAO,EAAE,CAAA;KACV;IACD,MAAM,SAAS,GAAG,IAAA,wBAAe,EAAC,IAAI,CAAC,CAAA;IAEvC,OAAO,UAAU,CAAC,IAAI,CAAC,SAAS,EAAE,yBAAyB,EAAE;QAC3D,SAAS;QACT,OAAO;QACP,aAAa;QACb,cAAc,EAAE,CAAC,OAAe,EAAE,EAAE;YAClC,IAAI,IAAA,yBAAO,EAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;aACzB;QACH,CAAC;KACF,CAAmB,CAAA;AACtB,CAAC;AAvBD,0DAuBC"}

package/dist/LaunchLinearGenomeView/index.js

@@ -3,7 +3,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const util_1 = require("@jbrowse/core/util");
 exports.default = (pluginManager) => {
     pluginManager.addToExtensionPoint('LaunchView-LinearGenomeView', 
-    // @ts-ignore
+    // @ts-expect-error
     async ({ session, assembly, loc, tracks = [], }) => {
         try {
             const { assemblyManager } = session;

package/dist/LaunchLinearGenomeView/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LaunchLinearGenomeView/index.ts"],"names":[],"mappings":";;AACA,6CAA+D;AAK/D,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,mBAAmB,CAC/B,6BAA6B;IAC7B,aAAa;IACb,KAAK,EAAE,EACL,OAAO,EACP,QAAQ,EACR,GAAG,EACH,MAAM,GAAG,EAAE,GAMZ,EAAE,EAAE;QACH,IAAI;YACF,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;YACnC,MAAM,IAAI,GAAG,OAAO,CAAC,OAAO,CAAC,kBAAkB,EAAE,EAAE,CAAQ,CAAA;YAE3D,MAAM,IAAA,WAAI,EAAC,GAAG,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;YAEtC,IAAI,CAAC,QAAQ,EAAE;gBACb,MAAM,IAAI,KAAK,CACb,wDAAwD,CACzD,CAAA;aACF;YAED,MAAM,GAAG,GAAG,MAAM,eAAe,CAAC,eAAe,CAAC,QAAQ,CAAC,CAAA;YAC3D,IAAI,CAAC,GAAG,EAAE;gBACR,MAAM,IAAI,KAAK,CACb,aAAa,QAAQ,+CAA+C,CACrE,CAAA;aACF;YAED,MAAM,IAAI,CAAC,cAAc,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAA;YAExC,MAAM,WAAW,GAAG,EAAc,CAAA;YAClC,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE;gBACrB,IAAI;oBACF,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,CAAA;iBACtB;gBAAC,OAAO,CAAC,EAAE;oBACV,IAAI,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,8BAA8B,CAAC,EAAE;wBAChD,WAAW,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;qBACxB;yBAAM;wBACL,MAAM,CAAC,CAAA;qBACR;iBACF;YACH,CAAC,CAAC,CAAA;YACF,IAAI,WAAW,CAAC,MAAM,EAAE;gBACtB,MAAM,IAAI,KAAK,CACb,kCAAkC,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAC1D,CAAA;aACF;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,CAAA;YAC/B,MAAM,CAAC,CAAA;SACR;IACH,CAAC,CACF,CAAA;AACH,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LaunchLinearGenomeView/index.ts"],"names":[],"mappings":";;AACA,6CAA+D;AAK/D,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,mBAAmB,CAC/B,6BAA6B;IAC7B,mBAAmB;IACnB,KAAK,EAAE,EACL,OAAO,EACP,QAAQ,EACR,GAAG,EACH,MAAM,GAAG,EAAE,GAMZ,EAAE,EAAE;QACH,IAAI;YACF,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;YACnC,MAAM,IAAI,GAAG,OAAO,CAAC,OAAO,CAAC,kBAAkB,EAAE,EAAE,CAAQ,CAAA;YAE3D,MAAM,IAAA,WAAI,EAAC,GAAG,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;YAEtC,IAAI,CAAC,QAAQ,EAAE;gBACb,MAAM,IAAI,KAAK,CACb,wDAAwD,CACzD,CAAA;aACF;YAED,MAAM,GAAG,GAAG,MAAM,eAAe,CAAC,eAAe,CAAC,QAAQ,CAAC,CAAA;YAC3D,IAAI,CAAC,GAAG,EAAE;gBACR,MAAM,IAAI,KAAK,CACb,aAAa,QAAQ,+CAA+C,CACrE,CAAA;aACF;YAED,MAAM,IAAI,CAAC,cAAc,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAA;YAExC,MAAM,WAAW,GAAG,EAAc,CAAA;YAClC,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE;gBACrB,IAAI;oBACF,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,CAAA;iBACtB;gBAAC,OAAO,CAAC,EAAE;oBACV,IAAI,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,8BAA8B,CAAC,EAAE;wBAChD,WAAW,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;qBACxB;yBAAM;wBACL,MAAM,CAAC,CAAA;qBACR;iBACF;YACH,CAAC,CAAC,CAAA;YACF,IAAI,WAAW,CAAC,MAAM,EAAE;gBACtB,MAAM,IAAI,KAAK,CACb,kCAAkC,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAC1D,CAAA;aACF;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,CAAA;YAC/B,MAAM,CAAC,CAAA;SACR;IACH,CAAC,CACF,CAAA;AACH,CAAC,CAAA"}

package/dist/LinearBareDisplay/index.d.ts

@@ -1,6 +1,5 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-import { configSchemaFactory } from './configSchema';
-import { stateModelFactory } from './model';
 declare const _default: (pluginManager: PluginManager) => void;
 export default _default;
-export { configSchemaFactory, stateModelFactory };
+export { configSchemaFactory } from './configSchema';
+export { stateModelFactory } from './model';