@jbrowse/plugin-linear-genome-view 2.3.4 → 2.4.1

package/dist/index.d.ts

@@ -1,10 +1,6 @@
 /// <reference types="react" />
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
-import { BaseLinearDisplay, BaseLinearDisplayComponent, BlockModel, BlockMsg, baseLinearDisplayConfigSchema } from './BaseLinearDisplay';
-import { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
-import { renderToSvg, LinearGenomeViewModel, LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
-import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory } from './LinearBasicDisplay';
 export default class LinearGenomeViewPlugin extends Plugin {
     name: string;
     exports: {
@@ -13,7 +9,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 id: string;
                 type: string;
                 rpcDriverName: string | undefined;
-                height: number;
+                heightPreConfig: number | undefined;
                 blockState: import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IModelType<{
                     key: import("mobx-state-tree").ISimpleType<string>;
                     region: import("mobx-state-tree").IModelType<{
@@ -168,6 +164,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
+                readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
                 readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
             } & {
@@ -230,13 +227,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
                     overrideHeight: number;
+                    theme: import("@mui/material").ThemeOptions;
                 }): Promise<JSX.Element>;
             } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
                 id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                 type: import("mobx-state-tree").ISimpleType<string>;
                 rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
             } & {
-                height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+                heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
                 blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
                     key: import("mobx-state-tree").ISimpleType<string>;
                     region: import("mobx-state-tree").IModelType<{
@@ -346,6 +344,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
+                readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
                 readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
             } & {
@@ -408,12 +407,67 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
                     overrideHeight: number;
+                    theme: import("@mui/material").ThemeOptions;
                 }): Promise<JSX.Element>;
-            }, import("mobx-state-tree")._NotCustomized, {
+            }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                type: import("mobx-state-tree").ISimpleType<string>;
+                rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            } & {
+                heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+                    key: import("mobx-state-tree").ISimpleType<string>;
+                    region: import("mobx-state-tree").IModelType<{
+                        refName: import("mobx-state-tree").ISimpleType<string>;
+                        start: import("mobx-state-tree").ISimpleType<number>;
+                        end: import("mobx-state-tree").ISimpleType<number>;
+                        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                    } & {
+                        assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                    }, {
+                        setRefName(newRefName: string): void;
+                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+                    reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+                    isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                    isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                }, {
+                    renderInProgress: AbortController | undefined;
+                    filled: boolean;
+                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                    features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
+                    layout: any;
+                    status: string;
+                    error: unknown;
+                    message: string | undefined;
+                    maxHeightReached: boolean;
+                    ReactComponent: ({ model, }: {
+                        model: any;
+                    }) => any;
+                    renderProps: any;
+                } & {
+                    doReload(): void;
+                    afterAttach(): void;
+                    setStatus(message: string): void;
+                    setLoading(abortController: AbortController): void;
+                    setMessage(messageText: string): void;
+                    setRendered(props: {
+                        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+                        features: Map<string, import("@jbrowse/core/util").Feature>;
+                        layout: any;
+                        maxHeightReached: boolean;
+                        renderProps: any;
+                    } | undefined): void;
+                    setError(error: unknown): void;
+                    reload(): void;
+                    beforeDestroy(): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            }>>, {
                 type: string;
-                height: number;
                 id: string;
                 rpcDriverName: string | undefined;
+                heightPreConfig: number | undefined;
                 userBpPerPxLimit: number | undefined;
                 userByteSizeLimit: number | undefined;
             }>>;
@@ -424,7 +478,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         } & {
-            height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+            heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
             blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
                 key: import("mobx-state-tree").ISimpleType<string>;
                 region: import("mobx-state-tree").IModelType<{
@@ -534,6 +588,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
             estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
         } & {
+            readonly height: number;
             readonly blockType: "dynamicBlocks" | "staticBlocks";
             readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
         } & {
@@ -596,12 +651,67 @@ export default class LinearGenomeViewPlugin extends Plugin {
         } & {
             renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
                 overrideHeight: number;
+                theme: import("@mui/material").ThemeOptions;
             }): Promise<JSX.Element>;
-        }, import("mobx-state-tree")._NotCustomized, {
+        }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        } & {
+            heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+                key: import("mobx-state-tree").ISimpleType<string>;
+                region: import("mobx-state-tree").IModelType<{
+                    refName: import("mobx-state-tree").ISimpleType<string>;
+                    start: import("mobx-state-tree").ISimpleType<number>;
+                    end: import("mobx-state-tree").ISimpleType<number>;
+                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                } & {
+                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                }, {
+                    setRefName(newRefName: string): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+                reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+                isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+            }, {
+                renderInProgress: AbortController | undefined;
+                filled: boolean;
+                reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
+                layout: any;
+                status: string;
+                error: unknown;
+                message: string | undefined;
+                maxHeightReached: boolean;
+                ReactComponent: ({ model, }: {
+                    model: any;
+                }) => any;
+                renderProps: any;
+            } & {
+                doReload(): void;
+                afterAttach(): void;
+                setStatus(message: string): void;
+                setLoading(abortController: AbortController): void;
+                setMessage(messageText: string): void;
+                setRendered(props: {
+                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+                    features: Map<string, import("@jbrowse/core/util").Feature>;
+                    layout: any;
+                    maxHeightReached: boolean;
+                    renderProps: any;
+                } | undefined): void;
+                setError(error: unknown): void;
+                reload(): void;
+                beforeDestroy(): void;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+            userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+        }>>, {
             type: string;
-            height: number;
             id: string;
             rpcDriverName: string | undefined;
+            heightPreConfig: number | undefined;
             userBpPerPxLimit: number | undefined;
             userByteSizeLimit: number | undefined;
         }>;
@@ -682,9 +792,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -711,7 +821,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -723,7 +833,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): void;
-                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
                 toggleCenterLine(): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -874,9 +984,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -903,7 +1013,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -915,7 +1025,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): void;
-                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
                 toggleCenterLine(): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1076,9 +1186,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1105,7 +1215,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1117,7 +1227,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): void;
-                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
                 toggleCenterLine(): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1268,9 +1378,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1297,7 +1407,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1309,7 +1419,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): void;
-                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
                 toggleCenterLine(): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1470,9 +1580,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1499,7 +1609,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1511,7 +1621,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): void;
-                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
                 toggleCenterLine(): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1662,9 +1772,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1691,7 +1801,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1703,7 +1813,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): void;
-                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
                 toggleCenterLine(): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1793,6 +1903,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
     install(pluginManager: PluginManager): void;
     configure(pluginManager: PluginManager): void;
 }
-export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, BlockMsg, };
-export type { LinearGenomeViewModel, LinearGenomeViewStateModel, BlockModel };
-export type { BaseLinearDisplayModel } from './BaseLinearDisplay';
+export type { BaseLinearDisplayModel, BlockModel } from './BaseLinearDisplay';
+export { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
+export { BlockMsg, baseLinearDisplayConfigSchema, BaseLinearDisplayComponent, BaseLinearDisplay, } from './BaseLinearDisplay';
+export { type LinearGenomeViewModel, RefNameAutocomplete, type LinearGenomeViewStateModel, SearchBox, } from './LinearGenomeView';
+export { renderToSvg, SVGTracks, totalHeight, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
+export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';

package/dist/index.js

@@ -26,26 +26,16 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.BlockMsg = exports.SearchBox = exports.RefNameAutocomplete = exports.BaseLinearDisplay = exports.BaseLinearDisplayComponent = exports.renderToSvg = exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.linearBareDisplayConfigSchemaFactory = exports.baseLinearDisplayConfigSchema = void 0;
+exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.SVGRuler = exports.totalHeight = exports.SVGTracks = exports.renderToSvg = exports.SearchBox = exports.RefNameAutocomplete = exports.BaseLinearDisplay = exports.BaseLinearDisplayComponent = exports.baseLinearDisplayConfigSchema = exports.BlockMsg = exports.linearBareDisplayConfigSchemaFactory = void 0;
 const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
 const util_1 = require("@jbrowse/core/util");
 // icons
 const LineStyle_1 = __importDefault(require("@mui/icons-material/LineStyle"));
 // locals
 const BaseLinearDisplay_1 = require("./BaseLinearDisplay");
-Object.defineProperty(exports, "BaseLinearDisplay", { enumerable: true, get: function () { return BaseLinearDisplay_1.BaseLinearDisplay; } });
-Object.defineProperty(exports, "BaseLinearDisplayComponent", { enumerable: true, get: function () { return BaseLinearDisplay_1.BaseLinearDisplayComponent; } });
-Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return BaseLinearDisplay_1.BlockMsg; } });
-Object.defineProperty(exports, "baseLinearDisplayConfigSchema", { enumerable: true, get: function () { return BaseLinearDisplay_1.baseLinearDisplayConfigSchema; } });
-const LinearBareDisplay_1 = __importStar(require("./LinearBareDisplay"));
-Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBareDisplay_1.configSchemaFactory; } });
+const LinearBareDisplay_1 = __importDefault(require("./LinearBareDisplay"));
 const LinearGenomeView_1 = __importStar(require("./LinearGenomeView"));
-Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return LinearGenomeView_1.renderToSvg; } });
-Object.defineProperty(exports, "RefNameAutocomplete", { enumerable: true, get: function () { return LinearGenomeView_1.RefNameAutocomplete; } });
-Object.defineProperty(exports, "SearchBox", { enumerable: true, get: function () { return LinearGenomeView_1.SearchBox; } });
-const LinearBasicDisplay_1 = __importStar(require("./LinearBasicDisplay"));
-Object.defineProperty(exports, "linearBasicDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBasicDisplay_1.configSchema; } });
-Object.defineProperty(exports, "linearBasicDisplayModelFactory", { enumerable: true, get: function () { return LinearBasicDisplay_1.modelFactory; } });
+const LinearBasicDisplay_1 = __importDefault(require("./LinearBasicDisplay"));
 const FeatureTrack_1 = __importDefault(require("./FeatureTrack"));
 const BasicTrack_1 = __importDefault(require("./BasicTrack"));
 const LaunchLinearGenomeView_1 = __importDefault(require("./LaunchLinearGenomeView"));
@@ -83,4 +73,22 @@ class LinearGenomeViewPlugin extends Plugin_1.default {
     }
 }
 exports.default = LinearGenomeViewPlugin;
+var LinearBareDisplay_2 = require("./LinearBareDisplay");
+Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBareDisplay_2.configSchemaFactory; } });
+var BaseLinearDisplay_2 = require("./BaseLinearDisplay");
+Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return BaseLinearDisplay_2.BlockMsg; } });
+Object.defineProperty(exports, "baseLinearDisplayConfigSchema", { enumerable: true, get: function () { return BaseLinearDisplay_2.baseLinearDisplayConfigSchema; } });
+Object.defineProperty(exports, "BaseLinearDisplayComponent", { enumerable: true, get: function () { return BaseLinearDisplay_2.BaseLinearDisplayComponent; } });
+Object.defineProperty(exports, "BaseLinearDisplay", { enumerable: true, get: function () { return BaseLinearDisplay_2.BaseLinearDisplay; } });
+var LinearGenomeView_2 = require("./LinearGenomeView");
+Object.defineProperty(exports, "RefNameAutocomplete", { enumerable: true, get: function () { return LinearGenomeView_2.RefNameAutocomplete; } });
+Object.defineProperty(exports, "SearchBox", { enumerable: true, get: function () { return LinearGenomeView_2.SearchBox; } });
+var SVGLinearGenomeView_1 = require("./LinearGenomeView/svgcomponents/SVGLinearGenomeView");
+Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return SVGLinearGenomeView_1.renderToSvg; } });
+Object.defineProperty(exports, "SVGTracks", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGTracks; } });
+Object.defineProperty(exports, "totalHeight", { enumerable: true, get: function () { return SVGLinearGenomeView_1.totalHeight; } });
+Object.defineProperty(exports, "SVGRuler", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGRuler; } });
+var LinearBasicDisplay_2 = require("./LinearBasicDisplay");
+Object.defineProperty(exports, "linearBasicDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBasicDisplay_2.configSchema; } });
+Object.defineProperty(exports, "linearBasicDisplayModelFactory", { enumerable: true, get: function () { return LinearBasicDisplay_2.modelFactory; } });
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AAEzC,6CAAgF;AAEhF,QAAQ;AACR,8EAAyD;AAEzD,SAAS;AACT,2DAI4B;AAC5B,4EAAoD;AACpD,uEAI2B;AAE3B,8EAAsD;AAEtD,kEAA0C;AAC1C,8DAAsC;AACtC,sFAA8D;AAE9D,MAAqB,sBAAuB,SAAQ,gBAAM;IAA1D;;QACE,SAAI,GAAG,wBAAwB,CAAA;QAE/B,YAAO,GAAG;YACR,0BAA0B,EAA1B,8CAA0B;YAC1B,iBAAiB,EAAjB,qCAAiB;YACjB,6BAA6B,EAA7B,iDAA6B;YAC7B,SAAS,EAAT,4BAAS;YACT,YAAY,EAAZ,+BAAY;YACZ,gBAAgB,EAAhB,mCAAgB;SACjB,CAAA;IAsBH,CAAC;IApBC,OAAO,CAAC,aAA4B;QAClC,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;QAC5B,IAAA,oBAAW,EAAC,aAAa,CAAC,CAAA;QAC1B,IAAA,4BAAmB,EAAC,aAAa,CAAC,CAAA;QAClC,IAAA,0BAAiB,EAAC,aAAa,CAAC,CAAA;QAChC,IAAA,2BAAkB,EAAC,aAAa,CAAC,CAAA;QACjC,IAAA,gCAAuB,EAAC,aAAa,CAAC,CAAA;IACxC,CAAC;IAED,SAAS,CAAC,aAA4B;QACpC,IAAI,IAAA,4BAAqB,EAAC,aAAa,CAAC,SAAS,CAAC,EAAE;YAClD,aAAa,CAAC,SAAS,CAAC,eAAe,CAAC,CAAC,KAAK,CAAC,EAAE;gBAC/C,KAAK,EAAE,oBAAoB;gBAC3B,IAAI,EAAE,mBAAa;gBACnB,OAAO,EAAE,CAAC,OAA6B,EAAE,EAAE;oBACzC,OAAO,CAAC,OAAO,CAAC,kBAAkB,EAAE,EAAE,CAAC,CAAA;gBACzC,CAAC;aACF,CAAC,CAAA;SACH;IACH,CAAC;CACF;AAhCD,yCAgCC;AAID,yDAAiG;AAAxF,yIAAA,mBAAmB,OAAwC;AACpE,yDAK4B;AAJ1B,6GAAA,QAAQ,OAAA;AACR,kIAAA,6BAA6B,OAAA;AAC7B,+HAAA,0BAA0B,OAAA;AAC1B,sHAAA,iBAAiB,OAAA;AAEnB,uDAK2B;AAHzB,uHAAA,mBAAmB,OAAA;AAEnB,6GAAA,SAAS,OAAA;AAEX,4FAK6D;AAJ3D,kHAAA,WAAW,OAAA;AACX,gHAAA,SAAS,OAAA;AACT,kHAAA,WAAW,OAAA;AACX,+GAAA,QAAQ,OAAA;AAEV,2DAG6B;AAF3B,2IAAA,YAAY,OAAyC;AACrD,oIAAA,YAAY,OAAkC"}

package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts

@@ -1,10 +1,9 @@
 import React from 'react';
-import Tooltip from './Tooltip';
-import BlockMsg from './BlockMsg';
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
 declare const BaseLinearDisplay: (props: {
     model: BaseLinearDisplayModel;
     children?: React.ReactNode;
 }) => JSX.Element;
 export default BaseLinearDisplay;
-export { Tooltip, BlockMsg };
+export { default as Tooltip } from './Tooltip';
+export { default as BlockMsg } from './BlockMsg';

package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js

@@ -5,8 +5,6 @@ import { makeStyles } from 'tss-react/mui';
 import { getConf } from '@jbrowse/core/configuration';
 import { Menu } from '@jbrowse/core/ui';
 // locals
-import Tooltip from './Tooltip';
-import BlockMsg from './BlockMsg';
 import LinearBlocks from './LinearBlocks';
 const useStyles = makeStyles()({
     display: {
@@ -65,5 +63,6 @@ const BaseLinearDisplay = observer(function (props) {
                 : undefined, style: { zIndex: theme.zIndex.tooltip }, menuItems: contextMenuItems() })));
 });
 export default BaseLinearDisplay;
-export { Tooltip, BlockMsg };
+export { default as Tooltip } from './Tooltip';
+export { default as BlockMsg } from './BlockMsg';
 //# sourceMappingURL=BaseLinearDisplay.js.map

package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js.map

@@ -1 +1 @@
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package/esm/BaseLinearDisplay/components/Block.js

@@ -17,7 +17,7 @@ const useStyles = makeStyles()(theme => ({
     },
     interRegionPaddingBlock: {
         minHeight: '100%',
-        backgroundColor: theme.palette.text.primary,
+        backgroundColor: theme.palette.text.disabled,
     },
     boundaryPaddingBlock: {
         minHeight: '100%',

package/esm/BaseLinearDisplay/components/Block.js.map

@@ -1 +1 @@
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package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js

@@ -7,17 +7,17 @@ import { LoadingEllipses } from '@jbrowse/core/ui';
 import RefreshIcon from '@mui/icons-material/Refresh';
 // locals
 import BlockMsg from './BlockMsg';
-const useStyles = makeStyles()(theme => ({
-    loading: {
-        paddingLeft: '0.6em',
-        backgroundColor: theme.palette.action.disabledBackground,
-        backgroundImage: 'repeating-linear-gradient(45deg, transparent, transparent 5px, rgba(255,255,255,.5) 5px, rgba(255,255,255,.5) 10px)',
-        height: '100%',
-        width: '100%',
-        pointerEvents: 'none',
-        textAlign: 'center',
-    },
-}));
+const useStyles = makeStyles()(theme => {
+    const bg = theme.palette.action.disabledBackground;
+    return {
+        loading: {
+            paddingLeft: '0.6em',
+            backgroundColor: theme.palette.background.default,
+            backgroundImage: `repeating-linear-gradient(45deg, transparent, transparent 5px, ${bg} 5px, ${bg} 10px)`,
+            textAlign: 'center',
+        },
+    };
+});
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
 const LoadingMessage = observer(({ model }) => {
     // only show the loading message after 300ms to prevent excessive flickering

package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ServerSideRenderedBlockContent.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAClD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAC3C,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAElD,QAAQ;AACR,OAAO,WAAW,MAAM,6BAA6B,CAAA;AAErD,SAAS;AACT,OAAO,QAAQ,MAAM,YAAY,CAAA;AAEjC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,GAAG,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB,CAAA;IAClD,OAAO;QACL,OAAO,EAAE;YACP,WAAW,EAAE,OAAO;YACpB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;YACjD,eAAe,EAAE,kEAAkE,EAAE,SAAS,EAAE,QAAQ;YACxG,SAAS,EAAE,QAAQ;SACpB;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,8DAA8D;AAC9D,MAAM,cAAc,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC5D,4EAA4E;IAC5E,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACzC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,MAAM,GAAG,KAAK,CAAA;QAClB,MAAM,OAAO,GAAG,UAAU,CAAC,GAAG,EAAE;YAC9B,IAAI,CAAC,MAAM,EAAE;gBACX,QAAQ,CAAC,IAAI,CAAC,CAAA;aACf;QACH,CAAC,EAAE,GAAG,CAAC,CAAA;QACP,OAAO,GAAG,EAAE;YACV,YAAY,CAAC,OAAO,CAAC,CAAA;YACrB,MAAM,GAAG,IAAI,CAAA;QACf,CAAC,CAAA;IACH,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACrC,8DAA8D;IAC9D,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,GAAG,SAAS,CAAM,KAAK,EAAE,CAAC,CAAC,CAAA;IAC3D,MAAM,MAAM,GAAG,aAAa,IAAI,WAAW,CAAA;IAC3C,OAAO,CACL,0CACG,KAAK,CAAC,CAAC,CAAC,CACP,6BAAK,SAAS,EAAE,OAAO,CAAC,OAAO;QAC7B,oBAAC,eAAe,IAAC,OAAO,EAAE,MAAM,GAAI,CAChC,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,8BAA8B,GAAG,QAAQ,CAAC,UAAU,EACxD,KAAK,GAIN;IACC,IAAI,KAAK,CAAC,KAAK,EAAE;QACf,OAAO,CACL,oBAAC,QAAQ,IACP,OAAO,EAAE,GAAG,KAAK,CAAC,KAAK,EAAE,EACzB,QAAQ,EAAC,OAAO,EAChB,UAAU,EAAC,QAAQ,EACnB,IAAI,EAAE,oBAAC,WAAW,OAAG,EACrB,MAAM,EAAE,KAAK,CAAC,MAAM,GACpB,CACH,CAAA;KACF;IACD,IAAI,KAAK,CAAC,OAAO,EAAE;QACjB,yFAAyF;QACzF,OAAO,KAAK,CAAC,cAAc,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAC3C,KAAK,CAAC,OAAO,CACd,CAAC,CAAC,CAAC,CACF,oBAAC,QAAQ,IAAC,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,EAAE,EAAE,QAAQ,EAAC,MAAM,GAAG,CAC1D,CAAA;KACF;IACD,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE;QACjB,OAAO,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;KACxC;IACD,OAAO,KAAK,CAAC,YAAY,CAAA;AAC3B,CAAC,CAAC,CAAA;AAEF,eAAe,8BAA8B,CAAA"}