@jbrowse/plugin-linear-genome-view 2.3.4 → 2.4.1

package/esm/LinearGenomeView/components/OverviewScalebar.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/RefNameAutocomplete.d.ts

@@ -6,7 +6,7 @@ export interface Option {
     group?: string;
     result: BaseResult;
 }
-declare function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp, minWidth, TextFieldProps, }: {
+declare function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp, minWidth, maxWidth, TextFieldProps, }: {
     model: LinearGenomeViewModel;
     onSelect?: (region: BaseResult) => void;
     onChange?: (val: string) => void;
@@ -15,6 +15,7 @@ declare function RefNameAutocomplete({ model, onSelect, assemblyName, style, fet
     fetchResults: (query: string) => Promise<BaseResult[]>;
     style?: React.CSSProperties;
     minWidth?: number;
+    maxWidth?: number;
     showHelp?: boolean;
     TextFieldProps?: TFP;
 }): JSX.Element;

package/esm/LinearGenomeView/components/RefNameAutocomplete.js

@@ -2,12 +2,38 @@ import React, { Suspense, lazy, useMemo, useEffect, useState } from 'react';
 import { observer } from 'mobx-react';
 import { getSession, useDebounce, measureText } from '@jbrowse/core/util';
 import BaseResult, { RefSequenceResult, } from '@jbrowse/core/TextSearch/BaseResults';
-import { Autocomplete, CircularProgress, IconButton, InputAdornment, TextField, } from '@mui/material';
+import { Autocomplete, IconButton, InputAdornment, TextField, } from '@mui/material';
 // icons
 import SearchIcon from '@mui/icons-material/Search';
 import HelpIcon from '@mui/icons-material/Help';
 // lazy
 const HelpDialog = lazy(() => import('./HelpDialog'));
+function aggregateResults(results) {
+    const m = {};
+    for (let i = 0; i < results.length; i++) {
+        const r = results[i];
+        const d = r.getDisplayString();
+        if (!m[d]) {
+            m[d] = [];
+        }
+        m[d].push(r);
+    }
+    return m;
+}
+function getDeduplicatedResult(results) {
+    return Object.entries(aggregateResults(results)).map(([displayString, results]) => results.length === 1
+        ? {
+            result: results[0],
+        }
+        : {
+            // deduplicate a "multi-result"
+            result: new BaseResult({
+                displayString,
+                results,
+                label: displayString,
+            }),
+        });
+}
 // the logic of this method is to only apply a filter to RefSequenceResults
 // because they do not have a matchedObject. the trix search results already
 // filter so don't need re-filtering
@@ -18,7 +44,7 @@ function filterOptions(options, searchQuery) {
             result.matchedObject);
     });
 }
-function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp = true, minWidth = 200, TextFieldProps = {}, }) {
+function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp = true, minWidth = 200, maxWidth = 550, TextFieldProps = {}, }) {
     const session = getSession(model);
     const { assemblyManager } = session;
     const [open, setOpen] = useState(false);
@@ -49,31 +75,8 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
                 setLoaded(false);
                 const results = await fetchResults(debouncedSearch);
                 if (active) {
-                    const m = {};
-                    for (let i = 0; i < results.length; i++) {
-                        const r = results[i];
-                        const d = r.getDisplayString();
-                        if (!m[d]) {
-                            m[d] = [];
-                        }
-                        m[d].push(r);
-                    }
-                    const display = Object.entries(m).map(([displayString, results]) => {
-                        if (results.length === 1) {
-                            return { result: results[0] };
-                        }
-                        else {
-                            return {
-                                result: new BaseResult({
-                                    displayString,
-                                    results,
-                                    label: displayString,
-                                }),
-                            };
-                        }
-                    });
-                    setSearchOptions(display);
                     setLoaded(true);
+                    setSearchOptions(getDeduplicatedResult(results));
                 }
             }
             catch (e) {
@@ -88,13 +91,14 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
         };
     }, [assemblyName, fetchResults, debouncedSearch, session, model]);
     const inputBoxVal = coarseVisibleLocStrings || value || '';
-    // heuristic, text width + icon width
-    // + 45 accommodates help icon and search icon
-    const width = Math.min(Math.max(measureText(inputBoxVal, 16) + 50, minWidth), 550);
+    // heuristic, text width + icon width + 50 accommodates help icon and search
+    // icon
+    const w = measureText(inputBoxVal, 16) + 50;
+    const width = Math.min(Math.max(w, minWidth), maxWidth);
     // notes on implementation:
     // The selectOnFocus setting helps highlight the field when clicked
     return (React.createElement(React.Fragment, null,
-        React.createElement(Autocomplete, { id: `refNameAutocomplete-${model.id}`, "data-testid": "autocomplete", disableListWrap: true, disableClearable: true, disabled: !assemblyName, freeSolo: true, includeInputInList: true, selectOnFocus: true, style: { ...style, width }, value: inputBoxVal, loading: !loaded, inputValue: inputValue, onInputChange: (_event, newInputValue) => {
+        React.createElement(Autocomplete, { "data-testid": "autocomplete", disableListWrap: true, disableClearable: true, disabled: !assemblyName, freeSolo: true, includeInputInList: true, selectOnFocus: true, style: { ...style, width }, value: inputBoxVal, loading: !loaded, inputValue: inputValue, onInputChange: (_event, newInputValue) => {
                 setInputValue(newInputValue);
                 onChange === null || onChange === void 0 ? void 0 : onChange(newInputValue);
             }, loadingText: "loading results", open: open, onOpen: () => setOpen(true), onClose: () => {
@@ -140,10 +144,10 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
                         ...params.InputProps,
                         ...InputProps,
                         endAdornment: (React.createElement(React.Fragment, null,
-                            regions.length === 0 ? (React.createElement(CircularProgress, { color: "inherit", size: 20 })) : (React.createElement(InputAdornment, { position: "end", style: { marginRight: 7 } },
+                            React.createElement(InputAdornment, { position: "end", style: { marginRight: 7 } },
                                 React.createElement(SearchIcon, { fontSize: "small" }),
                                 showHelp ? (React.createElement(IconButton, { onClick: () => setHelpDialogDisplayed(true), size: "small" },
-                                    React.createElement(HelpIcon, { fontSize: "small" }))) : null)),
+                                    React.createElement(HelpIcon, { fontSize: "small" }))) : null),
                             params.InputProps.endAdornment)),
                     }, placeholder: "Search for location", onChange: e => setCurrentSearch(e.target.value) }));
             }, getOptionLabel: option => (typeof option === 'string'

package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map

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+{"version":3,"file":"RefNameAutocomplete.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RefNameAutocomplete.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAC3E,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAA;AACzE,OAAO,UAAU,EAAE,EACjB,iBAAiB,GAClB,MAAM,sCAAsC,CAAA;AAC7C,OAAO,EACL,YAAY,EACZ,UAAU,EACV,cAAc,EACd,SAAS,GAEV,MAAM,eAAe,CAAA;AAEtB,QAAQ;AACR,OAAO,UAAU,MAAM,4BAA4B,CAAA;AACnD,OAAO,QAAQ,MAAM,0BAA0B,CAAA;AAK/C,OAAO;AACP,MAAM,UAAU,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC,CAAA;AAOrD,SAAS,gBAAgB,CAAC,OAAqB;IAC7C,MAAM,CAAC,GAAoC,EAAE,CAAA;IAE7C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QACvC,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAA;QACpB,MAAM,CAAC,GAAG,CAAC,CAAC,gBAAgB,EAAE,CAAA;QAC9B,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE;YACT,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAA;SACV;QACD,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;KACb;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED,SAAS,qBAAqB,CAAC,OAAqB;IAClD,OAAO,MAAM,CAAC,OAAO,CAAC,gBAAgB,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAClD,CAAC,CAAC,aAAa,EAAE,OAAO,CAAC,EAAE,EAAE,CAC3B,OAAO,CAAC,MAAM,KAAK,CAAC;QAClB,CAAC,CAAC;YACE,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC;SACnB;QACH,CAAC,CAAC;YACE,+BAA+B;YAC/B,MAAM,EAAE,IAAI,UAAU,CAAC;gBACrB,aAAa;gBACb,OAAO;gBACP,KAAK,EAAE,aAAa;aACrB,CAAC;SACH,CACR,CAAA;AACH,CAAC;AAED,2EAA2E;AAC3E,4EAA4E;AAC5E,oCAAoC;AACpC,SAAS,aAAa,CAAC,OAAiB,EAAE,WAAmB;IAC3D,OAAO,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE;QAC7B,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,CAAA;QACzB,OAAO,CACL,MAAM,CAAC,QAAQ,EAAE,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;YACrD,MAAM,CAAC,aAAa,CACrB,CAAA;IACH,CAAC,CAAC,CAAA;AACJ,CAAC;AAED,SAAS,mBAAmB,CAAC,EAC3B,KAAK,EACL,QAAQ,EACR,YAAY,EACZ,KAAK,EACL,YAAY,EACZ,QAAQ,EACR,KAAK,EACL,QAAQ,GAAG,IAAI,EACf,QAAQ,GAAG,GAAG,EACd,QAAQ,GAAG,GAAG,EACd,cAAc,GAAG,EAAE,GAapB;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACnC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IAC1C,MAAM,CAAC,qBAAqB,EAAE,sBAAsB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACvE,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACtD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAChD,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,EAAY,CAAA;IAC9D,MAAM,eAAe,GAAG,WAAW,CAAC,aAAa,EAAE,GAAG,CAAC,CAAA;IACvD,MAAM,QAAQ,GAAG,YAAY,CAAC,CAAC,CAAC,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;IAC7E,MAAM,EAAE,uBAAuB,EAAE,mBAAmB,EAAE,GAAG,KAAK,CAAA;IAE9D,uDAAuD;IACvD,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,OAAO,KAAI,EAAE,CAAA;IAEvC,MAAM,OAAO,GAAG,OAAO,CACrB,GAAG,EAAE,CACH,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;QACrB,MAAM,EAAE,IAAI,iBAAiB,CAAC;YAC5B,OAAO,EAAE,MAAM,CAAC,OAAO;YACvB,KAAK,EAAE,MAAM,CAAC,OAAO;YACrB,gBAAgB,EAAE,SAAS;SAC5B,CAAC;KACH,CAAC,CAAC,EACL,CAAC,OAAO,CAAC,CACV,CAAA;IAED,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,MAAM,GAAG,IAAI,CAGhB;QAAA,CAAC,KAAK,IAAI,EAAE;YACX,IAAI;gBACF,IAAI,eAAe,KAAK,EAAE,IAAI,CAAC,YAAY,EAAE;oBAC3C,OAAM;iBACP;gBAED,SAAS,CAAC,KAAK,CAAC,CAAA;gBAChB,MAAM,OAAO,GAAG,MAAM,YAAY,CAAC,eAAe,CAAC,CAAA;gBACnD,IAAI,MAAM,EAAE;oBACV,SAAS,CAAC,IAAI,CAAC,CAAA;oBACf,gBAAgB,CAAC,qBAAqB,CAAC,OAAO,CAAC,CAAC,CAAA;iBACjD;aACF;YAAC,OAAO,CAAC,EAAE;gBACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,IAAI,MAAM,EAAE;oBACV,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,CAAA;iBAChC;aACF;QACH,CAAC,CAAC,EAAE,CAAA;QAEJ,OAAO,GAAG,EAAE;YACV,MAAM,GAAG,KAAK,CAAA;QAChB,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,YAAY,EAAE,YAAY,EAAE,eAAe,EAAE,OAAO,EAAE,KAAK,CAAC,CAAC,CAAA;IAEjE,MAAM,WAAW,GAAG,uBAAuB,IAAI,KAAK,IAAI,EAAE,CAAA;IAE1D,4EAA4E;IAC5E,OAAO;IACP,MAAM,CAAC,GAAG,WAAW,CAAC,WAAW,EAAE,EAAE,CAAC,GAAG,EAAE,CAAA;IAC3C,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,QAAQ,CAAC,EAAE,QAAQ,CAAC,CAAA;IAEvD,2BAA2B;IAC3B,mEAAmE;IACnE,OAAO,CACL;QACE,oBAAC,YAAY,mBACC,cAAc,EAC1B,eAAe,QACf,gBAAgB,QAChB,QAAQ,EAAE,CAAC,YAAY,EACvB,QAAQ,QACR,kBAAkB,QAClB,aAAa,QACb,KAAK,EAAE,EAAE,GAAG,KAAK,EAAE,KAAK,EAAE,EAC1B,KAAK,EAAE,WAAW,EAClB,OAAO,EAAE,CAAC,MAAM,EAChB,UAAU,EAAE,UAAU,EACtB,aAAa,EAAE,CAAC,MAAM,EAAE,aAAa,EAAE,EAAE;gBACvC,aAAa,CAAC,aAAa,CAAC,CAAA;gBAC5B,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAG,aAAa,CAAC,CAAA;YAC3B,CAAC,EACD,WAAW,EAAC,iBAAiB,EAC7B,IAAI,EAAE,IAAI,EACV,MAAM,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,EAC3B,OAAO,EAAE,GAAG,EAAE;gBACZ,OAAO,CAAC,KAAK,CAAC,CAAA;gBACd,SAAS,CAAC,IAAI,CAAC,CAAA;gBACf,IAAI,mBAAmB,EAAE;oBACvB,gBAAgB,CAAC,EAAE,CAAC,CAAA;oBACpB,gBAAgB,CAAC,SAAS,CAAC,CAAA;iBAC5B;YACH,CAAC,EACD,QAAQ,EAAE,CAAC,MAAM,EAAE,cAAc,EAAE,EAAE;gBACnC,IAAI,CAAC,cAAc,IAAI,CAAC,YAAY,EAAE;oBACpC,OAAM;iBACP;gBAED,IAAI,OAAO,cAAc,KAAK,QAAQ,EAAE;oBACtC,0CAA0C;oBAC1C,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAG,IAAI,UAAU,CAAC,EAAE,KAAK,EAAE,cAAc,EAAE,CAAC,CAAC,CAAA;iBACtD;qBAAM;oBACL,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAG,cAAc,CAAC,MAAM,CAAC,CAAA;iBAClC;gBACD,aAAa,CAAC,WAAW,CAAC,CAAA;YAC5B,CAAC,EACD,OAAO,EAAE,CAAC,CAAA,aAAa,aAAb,aAAa,uBAAb,aAAa,CAAE,MAAM,CA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package/esm/LinearGenomeView/components/RubberbandSpan.d.ts

@@ -4,11 +4,11 @@ interface Offset {
     refName?: string;
     oob?: boolean;
 }
-declare function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, }: {
+export default function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, }: {
     leftBpOffset: Offset;
     rightBpOffset: Offset;
     numOfBpSelected?: number;
     left: number;
     width: number;
 }): JSX.Element;
-export default RubberbandSpan;
+export {};

package/esm/LinearGenomeView/components/RubberbandSpan.js

@@ -5,8 +5,8 @@ import { stringify, toLocale } from '@jbrowse/core/util';
 const useStyles = makeStyles()(theme => {
     const { primary, tertiary } = theme.palette;
     const background = tertiary
-        ? alpha(tertiary.main, 0.7)
-        : alpha(primary.main, 0.7);
+        ? alpha(tertiary.light, 0.7)
+        : alpha(primary.light, 0.7);
     return {
         rubberband: {
             height: '100%',
@@ -34,32 +34,17 @@ const useStyles = makeStyles()(theme => {
         },
     };
 });
-function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, }) {
+export default function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, }) {
     const ref = useRef(null);
     const { classes } = useStyles();
     return (React.createElement(React.Fragment, null,
         ref.current ? (React.createElement(React.Fragment, null,
-            React.createElement(Popover, { className: classes.popover, classes: { paper: classes.paper }, open: true, anchorEl: ref.current, anchorOrigin: {
-                    vertical: 'top',
-                    horizontal: 'left',
-                }, transformOrigin: {
-                    vertical: 'bottom',
-                    horizontal: 'right',
-                }, keepMounted: true, disableRestoreFocus: true },
+            React.createElement(Popover, { className: classes.popover, classes: { paper: classes.paper }, open: true, anchorEl: ref.current, anchorOrigin: { vertical: 'top', horizontal: 'left' }, transformOrigin: { vertical: 'bottom', horizontal: 'right' }, keepMounted: true, disableRestoreFocus: true },
                 React.createElement(Typography, null, stringify(leftBpOffset))),
-            React.createElement(Popover, { className: classes.popover, classes: {
-                    paper: classes.paper,
-                }, open: true, anchorEl: ref.current, anchorOrigin: {
-                    vertical: 'top',
-                    horizontal: 'right',
-                }, transformOrigin: {
-                    vertical: 'bottom',
-                    horizontal: 'left',
-                }, keepMounted: true, disableRestoreFocus: true },
+            React.createElement(Popover, { className: classes.popover, classes: { paper: classes.paper }, open: true, anchorEl: ref.current, anchorOrigin: { vertical: 'top', horizontal: 'right' }, transformOrigin: { vertical: 'bottom', horizontal: 'left' }, keepMounted: true, disableRestoreFocus: true },
                 React.createElement(Typography, null, stringify(rightBpOffset))))) : null,
         React.createElement("div", { ref: ref, className: classes.rubberband, style: { left, width } }, numOfBpSelected ? (React.createElement(Typography, { variant: "h6", className: classes.rubberbandText },
             toLocale(numOfBpSelected),
             " bp")) : null)));
 }
-export default RubberbandSpan;
 //# sourceMappingURL=RubberbandSpan.js.map

package/esm/LinearGenomeView/components/RubberbandSpan.js.map

@@ -1 +1 @@
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+{"version":3,"file":"RubberbandSpan.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RubberbandSpan.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AAC1D,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAA;AAExD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;IAC3C,MAAM,UAAU,GAAG,QAAQ;QACzB,CAAC,CAAC,KAAK,CAAC,QAAQ,CAAC,KAAK,EAAE,GAAG,CAAC;QAC5B,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,CAAA;IAC7B,OAAO;QACL,UAAU,EAAE;YACV,MAAM,EAAE,MAAM;YACd,UAAU;YACV,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,EAAE;YACV,SAAS,EAAE,QAAQ;YACnB,QAAQ,EAAE,QAAQ;SACnB;QACD,iBAAiB,EAAE;YACjB,MAAM,EAAE,WAAW;YACnB,KAAK,EAAE,MAAM;YACb,SAAS,EAAE,CAAC;SACb;QACD,cAAc,EAAE;YACd,KAAK,EAAE,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,YAAY;SAC/D;QACD,OAAO,EAAE;YACP,WAAW,EAAE,MAAM;YACnB,MAAM,EAAE,WAAW;SACpB;QACD,KAAK,EAAE;YACL,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;YAC7B,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC/B;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAQF,MAAM,CAAC,OAAO,UAAU,cAAc,CAAC,EACrC,YAAY,EACZ,aAAa,EACb,eAAe,EACf,IAAI,EACJ,KAAK,GAON;IACC,MAAM,GAAG,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;IACxB,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL;QACG,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CACb;YACE,oBAAC,OAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,OAAO,EAAE,EAAE,KAAK,EAAE,OAAO,CAAC,KAAK,EAAE,EACjC,IAAI,QACJ,QAAQ,EAAE,GAAG,CAAC,OAAO,EACrB,YAAY,EAAE,EAAE,QAAQ,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE,EACrD,eAAe,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,EAC5D,WAAW,QACX,mBAAmB;gBAEnB,oBAAC,UAAU,QAAE,SAAS,CAAC,YAAY,CAAC,CAAc,CAC1C;YACV,oBAAC,OAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,OAAO,EAAE,EAAE,KAAK,EAAE,OAAO,CAAC,KAAK,EAAE,EACjC,IAAI,QACJ,QAAQ,EAAE,GAAG,CAAC,OAAO,EACrB,YAAY,EAAE,EAAE,QAAQ,EAAE,KAAK,EAAE,UAAU,EAAE,OAAO,EAAE,EACtD,eAAe,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,EAAE,EAC3D,WAAW,QACX,mBAAmB;gBAEnB,oBAAC,UAAU,QAAE,SAAS,CAAC,aAAa,CAAC,CAAc,CAC3C,CACT,CACJ,CAAC,CAAC,CAAC,IAAI;QACR,6BAAK,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,OAAO,CAAC,UAAU,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,IACjE,eAAe,CAAC,CAAC,CAAC,CACjB,oBAAC,UAAU,IAAC,OAAO,EAAC,IAAI,EAAC,SAAS,EAAE,OAAO,CAAC,cAAc;YACvD,QAAQ,CAAC,eAAe,CAAC;kBACf,CACd,CAAC,CAAC,CAAC,IAAI,CACJ,CACL,CACJ,CAAA;AACH,CAAC"}

package/esm/LinearGenomeView/components/SearchBox.js

@@ -50,7 +50,7 @@ function SearchBox({ model, showHelp, }) {
                 const [ref, rest] = splitLast(input, ':');
                 const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
                 if (allRefs.includes(input) ||
-                    (allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
+                    (allRefs.includes(ref) && !Number.isNaN(Number.parseInt(rest, 10)))) {
                     await model.navToLocString(input, assemblyName);
                 }
                 else {
@@ -85,10 +85,10 @@ function SearchBox({ model, showHelp, }) {
             rankSearchResults,
             textSearchManager,
             assembly,
-        }), model: model, TextFieldProps: {
+        }), model: model, minWidth: 175, TextFieldProps: {
             variant: 'outlined',
             className: classes.headerRefName,
-            style: { margin: SPACING, minWidth: '175px' },
+            style: { margin: SPACING },
             InputProps: {
                 style: {
                     padding: 0,

package/esm/LinearGenomeView/components/SearchBox.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/TrackLabel.js

@@ -3,9 +3,10 @@ import { IconButton, Paper, Typography, alpha } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { getConf } from '@jbrowse/core/configuration';
-import CascadingMenu from '@jbrowse/core/ui/CascadingMenu';
 import { getSession, getContainingView } from '@jbrowse/core/util';
 import { getTrackName } from '@jbrowse/core/util/tracks';
+import { SanitizedHTML } from '@jbrowse/core/ui';
+import CascadingMenu from '@jbrowse/core/ui/CascadingMenu';
 import { bindTrigger, bindPopover, usePopupState, } from 'material-ui-popup-state/hooks';
 // icons
 import MoreVertIcon from '@mui/icons-material/MoreVert';
@@ -13,7 +14,6 @@ import DragIcon from '@mui/icons-material/DragIndicator';
 import CloseIcon from '@mui/icons-material/Close';
 import MinimizeIcon from '@mui/icons-material/Minimize';
 import AddIcon from '@mui/icons-material/Add';
-import { SanitizedHTML } from '@jbrowse/core/ui';
 const useStyles = makeStyles()(theme => ({
     root: {
         background: alpha(theme.palette.background.paper, 0.8),
@@ -32,7 +32,6 @@ const useStyles = makeStyles()(theme => ({
     },
     dragHandle: {
         cursor: 'grab',
-        color: '#135560',
     },
     dragHandleIcon: {
         display: 'inline-block',
@@ -43,7 +42,7 @@ const useStyles = makeStyles()(theme => ({
         padding: theme.spacing(1),
     },
 }));
-const TrackLabel = React.forwardRef(({ track, className }, ref) => {
+const TrackLabel = React.forwardRef(function ({ track, className }, ref) {
     var _a;
     const { classes, cx } = useStyles();
     const view = getContainingView(track);
@@ -75,11 +74,11 @@ const TrackLabel = React.forwardRef(({ track, className }, ref) => {
                 }
             }, onDragEnd: () => view.setDraggingTrackId(undefined), "data-testid": `dragHandle-${view.id}-${trackId}` },
             React.createElement(DragIcon, { className: classes.dragHandleIcon, fontSize: "small" })),
-        React.createElement(IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track", color: "secondary" },
+        React.createElement(IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track" },
             React.createElement(CloseIcon, { fontSize: "small" })),
         React.createElement(Typography, { variant: "body1", component: "span", className: classes.trackName },
-            React.createElement(SanitizedHTML, { html: trackName + (minimized ? ' (minimized)' : '') })),
-        React.createElement(IconButton, { ...bindTrigger(popupState), className: classes.iconButton, color: "secondary", "data-testid": "track_menu_icon", disabled: !items.length },
+            React.createElement(SanitizedHTML, { html: `${trackName}${minimized ? ' (minimized)' : ''}` })),
+        React.createElement(IconButton, { ...bindTrigger(popupState), className: classes.iconButton, "data-testid": "track_menu_icon", disabled: items.length === 0 },
             React.createElement(MoreVertIcon, { fontSize: "small" })),
         React.createElement(CascadingMenu, { ...bindPopover(popupState), onMenuItemClick: (_, callback) => callback(), menuItems: items, popupState: popupState })));
 });

package/esm/LinearGenomeView/components/TrackLabel.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAA;AAExD,OAAO,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AAChD,OAAO,aAAa,MAAM,gCAAgC,CAAA;AAE1D,OAAO,EACL,WAAW,EACX,WAAW,EACX,aAAa,GACd,MAAM,+BAA+B,CAAA;AAEtC,QAAQ;AACR,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,QAAQ,MAAM,mCAAmC,CAAA;AACxD,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,OAAO,MAAM,yBAAyB,CAAA;AAI7C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;KACf;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,MAAM,UAAU,GAAG,KAAK,CAAC,UAAU,CAAwB,UACzD,EAAE,KAAK,EAAE,SAAS,EAAE,EACpB,GAAG;;IAEH,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAA;IACjC,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,SAAS,GAAG,YAAY,CAAC,SAAS,EAAE,OAAO,CAAC,CAAA;IAElD,MAAM,UAAU,GAAG,aAAa,CAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,KAAK,GAAG;QACZ;YACE,KAAK,EAAE,SAAS,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,gBAAgB;YACrD,IAAI,EAAE,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,YAAY;YACxC,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,SAAS,CAAC;SAC9C;QACD,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL,oBAAC,KAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;QACrD,8BACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,MAAM,MAAM,GAAG,KAAK,CAAC,aAAa,CAAA;gBAClC,IAAI,MAAM,CAAC,UAAU,EAAE;oBACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;oBAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;oBAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;iBAClC;YACH,CAAC,EACD,SAAS,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,iBACtC,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;YAE/C,oBAAC,QAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;QACP,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB;YAExB,oBAAC,SAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;QAEb,oBAAC,UAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS;YAE5B,oBAAC,aAAa,IACZ,IAAI,EAAE,GAAG,SAAS,GAAG,SAAS,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,EAAE,GACtD,CACS;QACb,oBAAC,UAAU,OACL,WAAW,CAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,iBACjB,iBAAiB,EAC7B,QAAQ,EAAE,KAAK,CAAC,MAAM,KAAK,CAAC;YAE5B,oBAAC,YAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB;QACb,oBAAC,aAAa,OACR,WAAW,CAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACI,CACT,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAC,UAAU,CAAC,CAAA"}

package/esm/LinearGenomeView/components/TracksContainer.d.ts

@@ -1,9 +1,8 @@
 import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
-declare function TracksContainer({ children, model, }: {
+declare const _default: ({ children, model, }: {
     children: React.ReactNode;
     model: LGV;
-}): JSX.Element;
-declare const _default: typeof TracksContainer;
+}) => JSX.Element;
 export default _default;

package/esm/LinearGenomeView/components/TracksContainer.js

@@ -17,18 +17,20 @@ const useStyles = makeStyles()({
         position: 'relative',
         overflow: 'hidden',
     },
-    spacer: {
-        position: 'relative',
-        height: 3,
-    },
 });
-function TracksContainer({ children, model, }) {
+export default observer(function TracksContainer({ children, model, }) {
     const { classes } = useStyles();
     const { mouseDown: mouseDown1, mouseUp } = useSideScroll(model);
     const ref = useRef(null);
     const { guideX, rubberbandOn, leftBpOffset, rightBpOffset, numOfBpSelected, width, left, anchorPosition, handleMenuItemClick, open, handleClose, mouseMove, mouseDown: mouseDown2, } = useRangeSelect(ref, model, true);
     useWheelScroll(ref, model);
-    return (React.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: event => {
+    return (React.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onClick: event => {
+            var _a;
+            if (event.detail === 2) {
+                const left = ((_a = ref.current) === null || _a === void 0 ? void 0 : _a.getBoundingClientRect().left) || 0;
+                model.zoomTo(model.bpPerPx / 2, event.clientX - left, true);
+            }
+        }, onMouseDown: event => {
             mouseDown1(event);
             mouseDown2(event);
         }, onMouseMove: mouseMove, onMouseUp: mouseUp },
@@ -41,6 +43,5 @@ function TracksContainer({ children, model, }) {
             }, onMenuItemClick: handleMenuItemClick, open: open, onClose: handleClose, menuItems: model.rubberBandMenuItems() })) : null,
         React.createElement(Rubberband, { model: model, ControlComponent: React.createElement(Scalebar, { model: model, style: { height: SCALE_BAR_HEIGHT, boxSizing: 'border-box' } }) }),
         children));
-}
-export default observer(TracksContainer);
+});
 //# sourceMappingURL=TracksContainer.js.map

package/esm/LinearGenomeView/components/TracksContainer.js.map

@@ -1 +1 @@
-{"version":3,"file":"TracksContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TracksContainer.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AAEvC,cAAc;AACd,OAAO,EAAyB,gBAAgB,EAAE,MAAM,IAAI,CAAA;AAC5D,OAAO,EAAE,aAAa,EAAE,cAAc,EAAE,cAAc,EAAE,MAAM,SAAS,CAAA;AAEvE,mBAAmB;AACnB,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,QAAQ,MAAM,YAAY,CAAA;AACjC,OAAO,SAAS,MAAM,aAAa,CAAA;AACnC,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,aAAa,MAAM,iBAAiB,CAAA;AAC3C,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAE7C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,eAAe,EAAE;QACf,QAAQ,EAAE,UAAU;QACpB,QAAQ,EAAE,QAAQ;KACnB;IACD,MAAM,EAAE;QACN,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAIF,SAAS,eAAe,CAAC,EACvB,QAAQ,EACR,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,OAAO,EAAE,GAAG,aAAa,CAAC,KAAK,CAAC,CAAA;IAC/D,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,EACJ,MAAM,EACN,YAAY,EACZ,YAAY,EACZ,aAAa,EACb,eAAe,EACf,KAAK,EACL,IAAI,EACJ,cAAc,EACd,mBAAmB,EACnB,IAAI,EACJ,WAAW,EACX,SAAS,EACT,SAAS,EAAE,UAAU,GACtB,GAAG,cAAc,CAAC,GAAG,EAAE,KAAK,EAAE,IAAI,CAAC,CAAA;IACpC,cAAc,CAAC,GAAG,EAAE,KAAK,CAAC,CAAA;IAE1B,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,iBACI,gBAAgB,EAC5B,SAAS,EAAE,OAAO,CAAC,eAAe,EAClC,WAAW,EAAE,KAAK,CAAC,EAAE;YACnB,UAAU,CAAC,KAAK,CAAC,CAAA;YACjB,UAAU,CAAC,KAAK,CAAC,CAAA;QACnB,CAAC,EACD,WAAW,EAAE,SAAS,EACtB,SAAS,EAAE,OAAO;QAEjB,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QACxD,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QAC1D,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,CACtB,oBAAC,aAAa,IAAC,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,GAAI,CAChD,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,CACjB,oBAAC,cAAc,IACb,YAAY,EAAE,YAAY,EAC1B,aAAa,EAAE,aAAa,EAC5B,eAAe,EAAE,eAAe,EAChC,KAAK,EAAE,KAAK,EACZ,IAAI,EAAE,IAAI,GACV,CACH,CAAC,CAAC,CAAC,IAAI;QACP,cAAc,CAAC,CAAC,CAAC,CAChB,oBAAC,IAAI,IACH,eAAe,EAAC,gBAAgB,EAChC,cAAc,EAAE;gBACd,IAAI,EAAE,cAAc,CAAC,OAAO;gBAC5B,GAAG,EAAE,cAAc,CAAC,OAAO;aAC5B,EACD,eAAe,EAAE,mBAAmB,EACpC,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,WAAW,EACpB,SAAS,EAAE,KAAK,CAAC,mBAAmB,EAAE,GACtC,CACH,CAAC,CAAC,CAAC,IAAI;QAER,oBAAC,UAAU,IACT,KAAK,EAAE,KAAK,EACZ,gBAAgB,EACd,oBAAC,QAAQ,IACP,KAAK,EAAE,KAAK,EACZ,KAAK,EAAE,EAAE,MAAM,EAAE,gBAAgB,EAAE,SAAS,EAAE,YAAY,EAAE,GAC5D,GAEJ;QACD,QAAQ,CACL,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,eAAe,CAAC,CAAA"}
+{"version":3,"file":"TracksContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TracksContainer.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AAEvC,cAAc;AACd,OAAO,EAAyB,gBAAgB,EAAE,MAAM,IAAI,CAAA;AAC5D,OAAO,EAAE,aAAa,EAAE,cAAc,EAAE,cAAc,EAAE,MAAM,SAAS,CAAA;AAEvE,mBAAmB;AACnB,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,QAAQ,MAAM,YAAY,CAAA;AACjC,OAAO,SAAS,MAAM,aAAa,CAAA;AACnC,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,aAAa,MAAM,iBAAiB,CAAA;AAC3C,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAE7C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,eAAe,EAAE;QACf,QAAQ,EAAE,UAAU;QACpB,QAAQ,EAAE,QAAQ;KACnB;CACF,CAAC,CAAA;AAIF,eAAe,QAAQ,CAAC,SAAS,eAAe,CAAC,EAC/C,QAAQ,EACR,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,OAAO,EAAE,GAAG,aAAa,CAAC,KAAK,CAAC,CAAA;IAC/D,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,EACJ,MAAM,EACN,YAAY,EACZ,YAAY,EACZ,aAAa,EACb,eAAe,EACf,KAAK,EACL,IAAI,EACJ,cAAc,EACd,mBAAmB,EACnB,IAAI,EACJ,WAAW,EACX,SAAS,EACT,SAAS,EAAE,UAAU,GACtB,GAAG,cAAc,CAAC,GAAG,EAAE,KAAK,EAAE,IAAI,CAAC,CAAA;IACpC,cAAc,CAAC,GAAG,EAAE,KAAK,CAAC,CAAA;IAE1B,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,iBACI,gBAAgB,EAC5B,SAAS,EAAE,OAAO,CAAC,eAAe,EAClC,OAAO,EAAE,KAAK,CAAC,EAAE;;YACf,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE;gBACtB,MAAM,IAAI,GAAG,CAAA,MAAA,GAAG,CAAC,OAAO,0CAAE,qBAAqB,GAAG,IAAI,KAAI,CAAC,CAAA;gBAC3D,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,EAAE,KAAK,CAAC,OAAO,GAAG,IAAI,EAAE,IAAI,CAAC,CAAA;aAC5D;QACH,CAAC,EACD,WAAW,EAAE,KAAK,CAAC,EAAE;YACnB,UAAU,CAAC,KAAK,CAAC,CAAA;YACjB,UAAU,CAAC,KAAK,CAAC,CAAA;QACnB,CAAC,EACD,WAAW,EAAE,SAAS,EACtB,SAAS,EAAE,OAAO;QAEjB,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QACxD,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QAC1D,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,CACtB,oBAAC,aAAa,IAAC,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,GAAI,CAChD,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,CACjB,oBAAC,cAAc,IACb,YAAY,EAAE,YAAY,EAC1B,aAAa,EAAE,aAAa,EAC5B,eAAe,EAAE,eAAe,EAChC,KAAK,EAAE,KAAK,EACZ,IAAI,EAAE,IAAI,GACV,CACH,CAAC,CAAC,CAAC,IAAI;QACP,cAAc,CAAC,CAAC,CAAC,CAChB,oBAAC,IAAI,IACH,eAAe,EAAC,gBAAgB,EAChC,cAAc,EAAE;gBACd,IAAI,EAAE,cAAc,CAAC,OAAO;gBAC5B,GAAG,EAAE,cAAc,CAAC,OAAO;aAC5B,EACD,eAAe,EAAE,mBAAmB,EACpC,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,WAAW,EACpB,SAAS,EAAE,KAAK,CAAC,mBAAmB,EAAE,GACtC,CACH,CAAC,CAAC,CAAC,IAAI;QAER,oBAAC,UAAU,IACT,KAAK,EAAE,KAAK,EACZ,gBAAgB,EACd,oBAAC,QAAQ,IACP,KAAK,EAAE,KAAK,EACZ,KAAK,EAAE,EAAE,MAAM,EAAE,gBAAgB,EAAE,SAAS,EAAE,YAAY,EAAE,GAC5D,GAEJ;QACD,QAAQ,CACL,CACP,CAAA;AACH,CAAC,CAAC,CAAA"}

package/esm/LinearGenomeView/components/ZoomControls.js

@@ -4,7 +4,7 @@ import { Slider, IconButton } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
 import ZoomIn from '@mui/icons-material/ZoomIn';
 import ZoomOut from '@mui/icons-material/ZoomOut';
-const useStyles = makeStyles()({
+const useStyles = makeStyles()(theme => ({
     container: {
         display: 'flex',
         flexDirection: 'row',
@@ -12,8 +12,9 @@ const useStyles = makeStyles()({
     },
     slider: {
         width: 70,
+        color: theme.palette.text.secondary,
     },
-});
+}));
 function ZoomControls({ model }) {
     const { classes } = useStyles();
     const { maxBpPerPx, minBpPerPx, bpPerPx, scaleFactor } = model;
@@ -22,10 +23,10 @@ function ZoomControls({ model }) {
         setValue(-Math.log2(bpPerPx) * 100);
     }, [setValue, bpPerPx]);
     return (React.createElement("div", { className: classes.container },
-        React.createElement(IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1, color: "secondary", size: "large" },
+        React.createElement(IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1, size: "large" },
             React.createElement(ZoomOut, null)),
         React.createElement(Slider, { size: "small", className: classes.slider, value: value, min: -Math.log2(maxBpPerPx) * 100, max: -Math.log2(minBpPerPx) * 100, onChange: (_, val) => setValue(val), onChangeCommitted: () => model.zoomTo(2 ** (-value / 100)), disabled: scaleFactor !== 1 }),
-        React.createElement(IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1, color: "secondary", size: "large" },
+        React.createElement(IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1, size: "large" },
             React.createElement(ZoomIn, null))));
 }
 export default observer(ZoomControls);

package/esm/LinearGenomeView/components/ZoomControls.js.map

@@ -1 +1 @@
-{"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ZoomControls.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAClD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,OAAO,MAAM,6BAA6B,CAAA;AAGjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,SAAS,EAAE;QACT,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,KAAK;QACpB,UAAU,EAAE,QAAQ;KACrB;IACD,MAAM,EAAE;QACN,KAAK,EAAE,EAAE;KACV;CACF,CAAC,CAAA;AAEF,SAAS,YAAY,CAAC,EAAE,KAAK,EAAoC;IAC/D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,OAAO,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC9D,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAA;IAC7D,SAAS,CAAC,GAAG,EAAE;QACb,QAAQ,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAA;IACrC,CAAC,EAAE,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC,CAAA;IAEvB,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,SAAS;QAC/B,oBAAC,UAAU,mBACG,UAAU,EACtB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,GAAG,CAAC,CAAC,EACtC,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC,EAC7D,KAAK,EAAC,WAAW,EACjB,IAAI,EAAC,OAAO;YAEZ,oBAAC,OAAO,OAAG,CACA;QAEb,oBAAC,MAAM,IACL,IAAI,EAAC,OAAO,EACZ,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,KAAK,EAAE,KAAK,EACZ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,GAAG,EACjC,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,GAAG,EACjC,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAa,CAAC,EAC7C,iBAAiB,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,KAAK,GAAG,GAAG,CAAC,CAAC,EAC1D,QAAQ,EAAE,WAAW,KAAK,CAAC,GAC3B;QACF,oBAAC,UAAU,mBACG,SAAS,EACrB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,EAC5C,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC,EAC7D,KAAK,EAAC,WAAW,EACjB,IAAI,EAAC,OAAO;YAEZ,oBAAC,MAAM,OAAG,CACC,CACT,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,YAAY,CAAC,CAAA"}
+{"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ZoomControls.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAClD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,OAAO,MAAM,6BAA6B,CAAA;AAGjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,SAAS,EAAE;QACT,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,KAAK;QACpB,UAAU,EAAE,QAAQ;KACrB;IACD,MAAM,EAAE;QACN,KAAK,EAAE,EAAE;QACT,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,SAAS;KACpC;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,YAAY,CAAC,EAAE,KAAK,EAAoC;IAC/D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,OAAO,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC9D,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAA;IAC7D,SAAS,CAAC,GAAG,EAAE;QACb,QAAQ,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAA;IACrC,CAAC,EAAE,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC,CAAA;IAEvB,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,SAAS;QAC/B,oBAAC,UAAU,mBACG,UAAU,EACtB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,GAAG,CAAC,CAAC,EACtC,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC,EAC7D,IAAI,EAAC,OAAO;YAEZ,oBAAC,OAAO,OAAG,CACA;QAEb,oBAAC,MAAM,IACL,IAAI,EAAC,OAAO,EACZ,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,KAAK,EAAE,KAAK,EACZ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,GAAG,EACjC,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,GAAG,EACjC,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAa,CAAC,EAC7C,iBAAiB,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,KAAK,GAAG,GAAG,CAAC,CAAC,EAC1D,QAAQ,EAAE,WAAW,KAAK,CAAC,GAC3B;QACF,oBAAC,UAAU,mBACG,SAAS,EACrB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,EAC5C,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC,EAC7D,IAAI,EAAC,OAAO;YAEZ,oBAAC,MAAM,OAAG,CACC,CACT,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,YAAY,CAAC,CAAA"}

package/esm/LinearGenomeView/components/hooks.d.ts

@@ -61,5 +61,10 @@ export declare function useRangeSelect(ref: React.RefObject<HTMLDivElement>, mod
     left: number;
     guideX?: undefined;
 };
-export declare function useWheelScroll(ref: React.RefObject<HTMLDivElement>, model: LGV): void;
+export declare function useWheelScroll(ref: React.RefObject<HTMLDivElement>, model: {
+    bpPerPx: number;
+    zoomTo: (arg: number, arg2?: number) => void;
+    setScaleFactor: (arg: number) => void;
+    horizontalScroll: (arg: number) => void;
+}): void;
 export {};

package/esm/LinearGenomeView/components/hooks.js

@@ -219,7 +219,7 @@ export function useWheelScroll(ref, model) {
                     model.setScaleFactor(1);
                     model.zoomTo(delta.current > 0
                         ? model.bpPerPx * (1 + delta.current)
-                        : model.bpPerPx / (1 - delta.current));
+                        : model.bpPerPx / (1 - delta.current), origEvent.clientX - ((curr === null || curr === void 0 ? void 0 : curr.getBoundingClientRect().left) || 0));
                     delta.current = 0;
                 }, 300);
             }

package/esm/LinearGenomeView/components/hooks.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/util.d.ts

@@ -16,3 +16,9 @@ export declare function getRelativeX<T extends {
     clientX: number;
     target: EventTarget | null;
 }>(event: T, element: HTMLElement | null): number;
+export declare function getCytobands(assembly: Assembly | undefined, refName: string): {
+    refName: string;
+    start: number;
+    end: number;
+    type: any;
+}[];

package/esm/LinearGenomeView/components/util.js

@@ -27,4 +27,13 @@ export function splitLast(str, split) {
 export function getRelativeX(event, element) {
     return event.clientX - ((element === null || element === void 0 ? void 0 : element.getBoundingClientRect().left) || 0);
 }
+export function getCytobands(assembly, refName) {
+    var _a;
+    return (((_a = assembly === null || assembly === void 0 ? void 0 : assembly.cytobands) === null || _a === void 0 ? void 0 : _a.map(f => ({
+        refName: assembly.getCanonicalRefName(f.get('refName')),
+        start: f.get('start'),
+        end: f.get('end'),
+        type: f.get('type'),
+    })).filter(f => f.refName === refName)) || []);
+}
 //# sourceMappingURL=util.js.map