@jbrowse/plugin-linear-genome-view 2.3.4 → 2.4.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +2 -3
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +4 -4
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -1
- package/dist/BaseLinearDisplay/components/Block.js +1 -1
- package/dist/BaseLinearDisplay/components/Block.js.map +1 -1
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +11 -11
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +82 -7
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +43 -28
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
- package/dist/BaseLinearDisplay/models/configSchema.js +8 -0
- package/dist/BaseLinearDisplay/models/configSchema.js.map +1 -1
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -1
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +9 -5
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
- package/dist/BaseLinearDisplay/models/util.js +2 -2
- package/dist/BaseLinearDisplay/models/util.js.map +1 -1
- package/dist/LaunchLinearGenomeView/index.js +1 -1
- package/dist/LaunchLinearGenomeView/index.js.map +1 -1
- package/dist/LinearBareDisplay/index.d.ts +2 -3
- package/dist/LinearBareDisplay/index.js +4 -2
- package/dist/LinearBareDisplay/index.js.map +1 -1
- package/dist/LinearBareDisplay/model.d.ts +61 -3
- package/dist/LinearBasicDisplay/index.d.ts +2 -3
- package/dist/LinearBasicDisplay/index.js +4 -2
- package/dist/LinearBasicDisplay/index.js.map +1 -1
- package/dist/LinearBasicDisplay/model.d.ts +82 -14
- package/dist/LinearGenomeView/components/CenterLine.js +2 -2
- package/dist/LinearGenomeView/components/CenterLine.js.map +1 -1
- package/dist/LinearGenomeView/components/Cytobands.d.ts +118 -0
- package/dist/LinearGenomeView/components/Cytobands.js +92 -0
- package/dist/LinearGenomeView/components/Cytobands.js.map +1 -0
- package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +24 -3
- package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/Gridlines.js +1 -1
- package/dist/LinearGenomeView/components/Gridlines.js.map +1 -1
- package/dist/LinearGenomeView/components/Header.js +3 -4
- package/dist/LinearGenomeView/components/Header.js.map +1 -1
- package/dist/LinearGenomeView/components/ImportForm.d.ts +2 -2
- package/dist/LinearGenomeView/components/ImportForm.js +15 -19
- package/dist/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.js +1 -1
- package/dist/LinearGenomeView/components/MiniControls.js +5 -4
- package/dist/LinearGenomeView/components/MiniControls.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewRubberband.d.ts +3 -4
- package/dist/LinearGenomeView/components/OverviewRubberband.js +8 -11
- package/dist/LinearGenomeView/components/OverviewRubberband.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +4 -119
- package/dist/LinearGenomeView/components/OverviewScalebar.js +19 -103
- package/dist/LinearGenomeView/components/OverviewScalebar.js.map +1 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +2 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +35 -31
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
- package/dist/LinearGenomeView/components/RubberbandSpan.d.ts +2 -2
- package/dist/LinearGenomeView/components/RubberbandSpan.js +4 -18
- package/dist/LinearGenomeView/components/RubberbandSpan.js.map +1 -1
- package/dist/LinearGenomeView/components/SearchBox.js +3 -3
- package/dist/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/dist/LinearGenomeView/components/TrackLabel.js +6 -7
- package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +2 -3
- package/dist/LinearGenomeView/components/TracksContainer.js +9 -8
- package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -1
- package/dist/LinearGenomeView/components/ZoomControls.js +5 -4
- package/dist/LinearGenomeView/components/ZoomControls.js.map +1 -1
- package/dist/LinearGenomeView/components/hooks.d.ts +6 -1
- package/dist/LinearGenomeView/components/hooks.js +1 -1
- package/dist/LinearGenomeView/components/hooks.js.map +1 -1
- package/dist/LinearGenomeView/components/util.d.ts +6 -0
- package/dist/LinearGenomeView/components/util.js +11 -1
- package/dist/LinearGenomeView/components/util.js.map +1 -1
- package/dist/LinearGenomeView/index.js +8 -6
- package/dist/LinearGenomeView/index.js.map +1 -1
- package/dist/LinearGenomeView/model.d.ts +18 -12
- package/dist/LinearGenomeView/model.js +31 -34
- package/dist/LinearGenomeView/model.js.map +1 -1
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +6 -0
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +13 -0
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +10 -0
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +55 -0
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +12 -0
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +57 -0
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +13 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +51 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +22 -0
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +16 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +23 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +30 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.js.map +1 -0
- package/dist/LinearGenomeView/util.js +2 -2
- package/dist/LinearGenomeView/util.js.map +1 -1
- package/dist/index.d.ts +157 -44
- package/dist/index.js +21 -13
- package/dist/index.js.map +1 -1
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +2 -3
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +2 -3
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -1
- package/esm/BaseLinearDisplay/components/Block.js +1 -1
- package/esm/BaseLinearDisplay/components/Block.js.map +1 -1
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +11 -11
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +82 -7
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +44 -29
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
- package/esm/BaseLinearDisplay/models/configSchema.js +8 -0
- package/esm/BaseLinearDisplay/models/configSchema.js.map +1 -1
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -1
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +9 -5
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
- package/esm/BaseLinearDisplay/models/util.js +2 -2
- package/esm/BaseLinearDisplay/models/util.js.map +1 -1
- package/esm/LaunchLinearGenomeView/index.js +1 -1
- package/esm/LaunchLinearGenomeView/index.js.map +1 -1
- package/esm/LinearBareDisplay/index.d.ts +2 -3
- package/esm/LinearBareDisplay/index.js +2 -1
- package/esm/LinearBareDisplay/index.js.map +1 -1
- package/esm/LinearBareDisplay/model.d.ts +61 -3
- package/esm/LinearBasicDisplay/index.d.ts +2 -3
- package/esm/LinearBasicDisplay/index.js +2 -1
- package/esm/LinearBasicDisplay/index.js.map +1 -1
- package/esm/LinearBasicDisplay/model.d.ts +82 -14
- package/esm/LinearGenomeView/components/CenterLine.js +2 -2
- package/esm/LinearGenomeView/components/CenterLine.js.map +1 -1
- package/esm/LinearGenomeView/components/Cytobands.d.ts +118 -0
- package/esm/LinearGenomeView/components/Cytobands.js +87 -0
- package/esm/LinearGenomeView/components/Cytobands.js.map +1 -0
- package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
- package/esm/LinearGenomeView/components/ExportSvgDialog.js +25 -4
- package/esm/LinearGenomeView/components/ExportSvgDialog.js.map +1 -1
- package/esm/LinearGenomeView/components/Gridlines.js +1 -1
- package/esm/LinearGenomeView/components/Gridlines.js.map +1 -1
- package/esm/LinearGenomeView/components/Header.js +5 -6
- package/esm/LinearGenomeView/components/Header.js.map +1 -1
- package/esm/LinearGenomeView/components/ImportForm.d.ts +2 -2
- package/esm/LinearGenomeView/components/ImportForm.js +16 -20
- package/esm/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.js +1 -1
- package/esm/LinearGenomeView/components/MiniControls.js +5 -4
- package/esm/LinearGenomeView/components/MiniControls.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewRubberband.d.ts +3 -4
- package/esm/LinearGenomeView/components/OverviewRubberband.js +8 -11
- package/esm/LinearGenomeView/components/OverviewRubberband.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +4 -119
- package/esm/LinearGenomeView/components/OverviewScalebar.js +16 -100
- package/esm/LinearGenomeView/components/OverviewScalebar.js.map +1 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete.d.ts +2 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js +36 -32
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
- package/esm/LinearGenomeView/components/RubberbandSpan.d.ts +2 -2
- package/esm/LinearGenomeView/components/RubberbandSpan.js +5 -20
- package/esm/LinearGenomeView/components/RubberbandSpan.js.map +1 -1
- package/esm/LinearGenomeView/components/SearchBox.js +3 -3
- package/esm/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/esm/LinearGenomeView/components/TrackLabel.js +6 -7
- package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/esm/LinearGenomeView/components/TracksContainer.d.ts +2 -3
- package/esm/LinearGenomeView/components/TracksContainer.js +9 -8
- package/esm/LinearGenomeView/components/TracksContainer.js.map +1 -1
- package/esm/LinearGenomeView/components/ZoomControls.js +5 -4
- package/esm/LinearGenomeView/components/ZoomControls.js.map +1 -1
- package/esm/LinearGenomeView/components/hooks.d.ts +6 -1
- package/esm/LinearGenomeView/components/hooks.js +1 -1
- package/esm/LinearGenomeView/components/hooks.js.map +1 -1
- package/esm/LinearGenomeView/components/util.d.ts +6 -0
- package/esm/LinearGenomeView/components/util.js +9 -0
- package/esm/LinearGenomeView/components/util.js.map +1 -1
- package/esm/LinearGenomeView/index.js +8 -6
- package/esm/LinearGenomeView/index.js.map +1 -1
- package/esm/LinearGenomeView/model.d.ts +18 -12
- package/esm/LinearGenomeView/model.js +24 -28
- package/esm/LinearGenomeView/model.js.map +1 -1
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.d.ts +6 -0
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.js +7 -0
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.d.ts +10 -0
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +49 -0
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +12 -0
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +47 -0
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +7 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +45 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js +16 -0
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js +10 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.d.ts +23 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +24 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.js.map +1 -0
- package/esm/LinearGenomeView/util.js +2 -2
- package/esm/LinearGenomeView/util.js.map +1 -1
- package/esm/index.d.ts +157 -44
- package/esm/index.js +9 -5
- package/esm/index.js.map +1 -1
- package/package.json +3 -3
- package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx +4 -3
- package/src/BaseLinearDisplay/components/Block.tsx +1 -1
- package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx +11 -12
- package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +55 -40
- package/src/BaseLinearDisplay/models/configSchema.ts +8 -0
- package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +15 -22
- package/src/BaseLinearDisplay/models/util.ts +2 -2
- package/src/LaunchLinearGenomeView/index.ts +1 -1
- package/src/LinearBareDisplay/index.ts +2 -1
- package/src/LinearBasicDisplay/index.ts +2 -1
- package/src/LinearGenomeView/components/CenterLine.tsx +2 -2
- package/src/LinearGenomeView/components/Cytobands.tsx +154 -0
- package/src/LinearGenomeView/components/ExportSvgDialog.tsx +56 -4
- package/src/LinearGenomeView/components/Gridlines.tsx +1 -1
- package/src/LinearGenomeView/components/Header.tsx +6 -13
- package/src/LinearGenomeView/components/ImportForm.tsx +17 -26
- package/src/LinearGenomeView/components/LinearGenomeView.test.tsx +8 -11
- package/src/LinearGenomeView/components/LinearGenomeView.tsx +1 -1
- package/src/LinearGenomeView/components/MiniControls.tsx +6 -7
- package/src/LinearGenomeView/components/OverviewRubberband.tsx +40 -49
- package/src/LinearGenomeView/components/OverviewScalebar.tsx +222 -385
- package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +50 -48
- package/src/LinearGenomeView/components/RubberbandSpan.tsx +8 -25
- package/src/LinearGenomeView/components/SearchBox.tsx +3 -2
- package/src/LinearGenomeView/components/TrackLabel.tsx +76 -76
- package/src/LinearGenomeView/components/TracksContainer.tsx +8 -8
- package/src/LinearGenomeView/components/ZoomControls.tsx +3 -4
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap +1230 -1200
- package/src/LinearGenomeView/components/hooks.ts +7 -1
- package/src/LinearGenomeView/components/util.ts +13 -0
- package/src/LinearGenomeView/index.test.ts +12 -13
- package/src/LinearGenomeView/index.ts +8 -9
- package/src/LinearGenomeView/model.ts +41 -36
- package/src/LinearGenomeView/svgcomponents/SVGBackground.tsx +21 -0
- package/src/LinearGenomeView/svgcomponents/SVGHeader.tsx +93 -0
- package/src/LinearGenomeView/svgcomponents/SVGLinearGenomeView.tsx +114 -0
- package/src/LinearGenomeView/svgcomponents/SVGRegionSeparators.tsx +31 -0
- package/src/LinearGenomeView/svgcomponents/SVGRuler.tsx +125 -0
- package/src/LinearGenomeView/svgcomponents/SVGScalebar.tsx +57 -0
- package/src/LinearGenomeView/svgcomponents/SVGTrackLabel.tsx +47 -0
- package/src/LinearGenomeView/svgcomponents/SVGTracks.tsx +67 -0
- package/src/LinearGenomeView/util.test.ts +7 -4
- package/src/LinearGenomeView/util.ts +3 -3
- package/src/index.ts +22 -23
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +0 -4
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +0 -141
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +0 -1
- package/dist/LinearGenomeView/components/Ruler.d.ts +0 -11
- package/dist/LinearGenomeView/components/Ruler.js +0 -39
- package/dist/LinearGenomeView/components/Ruler.js.map +0 -1
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +0 -4
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +0 -134
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +0 -1
- package/esm/LinearGenomeView/components/Ruler.d.ts +0 -11
- package/esm/LinearGenomeView/components/Ruler.js +0 -34
- package/esm/LinearGenomeView/components/Ruler.js.map +0 -1
- package/src/LinearGenomeView/components/LinearGenomeViewSvg.tsx +0 -307
- package/src/LinearGenomeView/components/Ruler.tsx +0 -78
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{"version":3,"file":"ExportSvgDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ExportSvgDialog.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,
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{"version":3,"file":"ExportSvgDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ExportSvgDialog.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAUsB;AACtB,yCAAuD;AACvD,6CAAgE;AAKhE,SAAS,cAAc;IACrB,OAAO,CACL;QACE,8BAAC,2BAAgB,IAAC,IAAI,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,WAAW,EAAE,EAAE,EAAE,GAAI;QAC1D,8BAAC,qBAAU,IAAC,OAAO,EAAC,QAAQ,mBAA0B,CAClD,CACP,CAAA;AACH,CAAC;AAED,SAAS,WAAW,CAAI,GAAW,EAAE,GAAM;IACzC,OAAO,IAAA,sBAAe,EAAC,MAAM,GAAG,GAAG,EAAE,GAAG,CAAC,CAAA;AAC3C,CAAC;AAED,SAAwB,YAAY,CAAC,EACnC,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,eAAe,GAAG,OAAO,eAAe,KAAK,WAAW,CAAA;IAC9D,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,IAAA,gBAAQ,EAAC,eAAe,CAAC,CAAA;IACvE,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IAC7C,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,GAAW,CAAA;IAC7C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,WAAW,CAAC,MAAM,EAAE,aAAa,CAAC,CAAA;IAClE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,WAAW,CAAC,aAAa,EAAE,QAAQ,CAAC,CAAA;IAC1E,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,WAAW,CAC3C,OAAO,EACP,OAAO,CAAC,SAAS,IAAI,SAAS,CAC/B,CAAA;IACD,OAAO,CACL,8BAAC,WAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,YAAY;QACnD,8BAAC,wBAAa;YACX,KAAK,CAAC,CAAC,CAAC,CACP,8BAAC,iBAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAC/B,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CACZ,8BAAC,cAAc,OAAG,CACnB,CAAC,CAAC,CAAC,IAAI;YACR,8BAAC,oBAAS,IACR,UAAU,EAAC,UAAU,EACrB,KAAK,EAAE,QAAQ,EACf,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,GAClD;YACF,yCAAM;YACN,8BAAC,oBAAS,IACR,MAAM,QACN,KAAK,EAAC,yBAAyB,EAC/B,OAAO,EAAC,UAAU,EAClB,KAAK,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,EACrB,KAAK,EAAE,WAAW,EAClB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,cAAc,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC;gBAErD,8BAAC,mBAAQ,IAAC,KAAK,EAAC,QAAQ,aAAkB;gBAC1C,8BAAC,mBAAQ,IAAC,KAAK,EAAC,SAAS,cAAmB;gBAC5C,8BAAC,mBAAQ,IAAC,KAAK,EAAC,MAAM,WAAgB;gBACtC,8BAAC,mBAAQ,IAAC,KAAK,EAAC,MAAM,WAAgB,CAC5B;YACZ,yCAAM;YACL,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,CACnB,8BAAC,oBAAS,IACR,MAAM,QACN,KAAK,EAAC,OAAO,EACb,OAAO,EAAC,UAAU,EAClB,KAAK,EAAE,SAAS,EAChB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAElD,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,SAAS,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,EAAE,CAAC,CACvD,8BAAC,mBAAQ,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG;YAE1B,mBAAmB;YACnB,GAAG,CAAC,IAAI,IAAI,gBAAgB,CAErB,CACZ,CAAC,CACQ,CACb,CAAC,CAAC,CAAC,IAAI;YAEP,eAAe,CAAC,CAAC,CAAC,CACjB,8BAAC,2BAAgB,IACf,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,eAAe,EACxB,QAAQ,EAAE,GAAG,EAAE,CAAC,kBAAkB,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,GAC/C,EAEJ,KAAK,EAAC,8EAA8E,GACpF,CACH,CAAC,CAAC,CAAC,CACF,8BAAC,qBAAU,+FAGE,CACd,CACa;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,aAGrB;YACT,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,OAAO,EAAE,KAAK,IAAI,EAAE;oBAClB,UAAU,CAAC,IAAI,CAAC,CAAA;oBAChB,QAAQ,CAAC,SAAS,CAAC,CAAA;oBACnB,IAAI;wBACF,MAAM,KAAK,CAAC,SAAS,CAAC;4BACpB,eAAe;4BACf,QAAQ;4BACR,WAAW;4BACX,SAAS;yBACV,CAAC,CAAA;wBACF,WAAW,EAAE,CAAA;qBACd;oBAAC,OAAO,CAAC,EAAE;wBACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;wBAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACX,UAAU,CAAC,KAAK,CAAC,CAAA;qBAClB;gBACH,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC;AArHD,+BAqHC"}
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@@ -1 +1 @@
|
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1
|
-
{"version":3,"file":"Gridlines.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Gridlines.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,8DAIsC;AACtC,uCAA0C;AAC1C,2CAAqC;AAErC,oEAIiD;AAEjD,kCAAmC;AAInC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,2BAA2B,EAAE;QAC3B,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;QACb,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;KACtB;IACD,uBAAuB,EAAE;QACvB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;QACrB,OAAO,EAAE,MAAM;KAChB;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,CAAC;KACT;IACD,SAAS,EAAE;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,
|
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1
|
+
{"version":3,"file":"Gridlines.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Gridlines.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,8DAIsC;AACtC,uCAA0C;AAC1C,2CAAqC;AAErC,oEAIiD;AAEjD,kCAAmC;AAInC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,2BAA2B,EAAE;QAC3B,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;QACb,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;KACtB;IACD,uBAAuB,EAAE;QACvB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;QACrB,OAAO,EAAE,MAAM;KAChB;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,CAAC;KACT;IACD,SAAS,EAAE;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,QAAQ;KAC1C;IACD,SAAS,EAAE;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,OAAO;KAClC;CACF,CAAC,CAAC,CAAA;AACH,MAAM,sBAAsB,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACpE,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,OAAO,CACL,8DACG,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACvC,IAAI,KAAK,YAAY,yBAAY,EAAE;YACjC,MAAM,KAAK,GAAG,IAAA,gBAAS,EAAC,KAAK,CAAC,KAAK,EAAE,KAAK,CAAC,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAA;YAC9D,OAAO,CACL,8BAAC,oBAAqB,IAAC,GAAG,EAAE,GAAG,KAAK,CAAC,GAAG,IAAI,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,IAC9D,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;gBAChB,MAAM,CAAC,GACL,CAAC,KAAK,CAAC,QAAQ;oBACb,CAAC,CAAC,KAAK,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI;oBACvB,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,GAAG,KAAK,CAAC,OAAO,CAAA;gBAC9C,OAAO,CACL,uCACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,SAAS,EAAE,EAAE,CACX,OAAO,CAAC,IAAI,EACZ,IAAI,CAAC,IAAI,KAAK,OAAO,IAAI,IAAI,CAAC,IAAI,KAAK,cAAc;wBACnD,CAAC,CAAC,OAAO,CAAC,SAAS;wBACnB,CAAC,CAAC,OAAO,CAAC,SAAS,CACtB,EACD,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,GAClB,CACH,CAAA;YACH,CAAC,CAAC,CACoB,CACzB,CAAA;SACF;QACD,IAAI,KAAK,YAAY,wBAAW,EAAE;YAChC,OAAO,8BAAC,mBAAoB,IAAC,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,KAAK,EAAE,KAAK,CAAC,OAAO,GAAI,CAAA;SACtE;QACD,IAAI,KAAK,YAAY,oCAAuB,EAAE;YAC5C,OAAO,CACL,8BAAC,+BAAgC,IAC/B,GAAG,EAAE,KAAK,CAAC,GAAG,EACd,KAAK,EAAE,KAAK,CAAC,OAAO,EACpB,QAAQ,EAAE,KAAK,CAAC,OAAO,KAAK,UAAU,GACtC,CACH,CAAA;SACF;QACD,OAAO,IAAI,CAAA;IACb,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,SAAS,cAAc,CAAC,EAAE,KAAK,EAAkB;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,iEAAiE;IACjE,MAAM,UAAU,GAAG,KAAK,CAAC,YAAY,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAA;IAC/D,OAAO,CACL,uCACE,SAAS,EAAE,OAAO,CAAC,2BAA2B,EAC9C,KAAK,EAAE;YACL,SAAS,EACP,KAAK,CAAC,WAAW,KAAK,CAAC,CAAC,CAAC,CAAC,UAAU,KAAK,CAAC,WAAW,GAAG,CAAC,CAAC,CAAC,SAAS;SACvE;QAED,uCACE,SAAS,EAAE,OAAO,CAAC,uBAAuB,EAC1C,KAAK,EAAE;gBACL,IAAI,EAAE,UAAU;gBAChB,KAAK,EAAE,KAAK,CAAC,YAAY,CAAC,YAAY;aACvC;YAED,8BAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC,CACF,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,cAAc,CAAC,CAAA"}
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@@ -19,7 +19,6 @@ const ZoomControls_1 = __importDefault(require("./ZoomControls"));
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const SearchBox_1 = __importDefault(require("./SearchBox"));
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const useStyles = (0, mui_1.makeStyles)()(theme => ({
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headerBar: {
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height: __1.HEADER_BAR_HEIGHT,
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display: 'flex',
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},
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headerForm: {
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panButton: {
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bp: {
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@@ -42,7 +41,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
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toggleButton: {
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height: 44,
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border: 'none',
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+
marginLeft: theme.spacing(4),
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},
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buttonSpacer: {
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marginRight: theme.spacing(2),
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@@ -50,7 +49,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
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}));
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const HeaderButtons = (0, mobx_react_1.observer)(({ model }) => {
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const { classes } = useStyles();
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return (react_1.default.createElement(material_1.
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return (react_1.default.createElement(material_1.IconButton, { onClick: model.activateTrackSelector, className: classes.toggleButton, title: "Open track selector", value: "track_select" },
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react_1.default.createElement(Icons_1.TrackSelector, { className: classes.buttonSpacer })));
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});
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function PanControls({ model }) {
|
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@@ -1 +1 @@
|
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1
|
-
{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Header.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,
|
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1
|
+
{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Header.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAAgF;AAChF,uCAA0C;AAC1C,6CAAoD;AAEpD,QAAQ;AACR,kDAA2E;AAC3E,oFAA+D;AAC/D,8EAAyD;AAEzD,SAAS;AACT,0BAAmD;AACnD,0EAAiD;AACjD,kEAAyC;AACzC,4DAAmC;AAGnC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,SAAS,EAAE;QACT,OAAO,EAAE,MAAM;KAChB;IACD,UAAU,EAAE;QACV,QAAQ,EAAE,QAAQ;QAClB,WAAW,EAAE,CAAC;KACf;IACD,MAAM,EAAE;QACN,QAAQ,EAAE,CAAC;KACZ;IAED,SAAS,EAAE;QACT,UAAU,EAAE,IAAA,gBAAK,EAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO;QACjC,MAAM,EAAE,WAAO;KAChB;IACD,EAAE,EAAE;QACF,OAAO,EAAE,MAAM;QACf,UAAU,EAAE,QAAQ;QACpB,UAAU,EAAE,CAAC;KACd;IACD,YAAY,EAAE;QACZ,MAAM,EAAE,EAAE;QACV,MAAM,EAAE,MAAM;QACd,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC7B;IACD,YAAY,EAAE;QACZ,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC9B;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,aAAa,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC3D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,8BAAC,qBAAU,IACT,OAAO,EAAE,KAAK,CAAC,qBAAqB,EACpC,SAAS,EAAE,OAAO,CAAC,YAAY,EAC/B,KAAK,EAAC,qBAAqB,EAC3B,KAAK,EAAC,cAAc;QAEpB,8BAAC,qBAAiB,IAAC,SAAS,EAAE,OAAO,CAAC,YAAY,GAAI,CAC3C,CACd,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,WAAW,CAAC,EAAE,KAAK,EAAkB;IAC5C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL;QACE,8BAAC,iBAAM,IACL,OAAO,EAAC,UAAU,EAClB,SAAS,EAAE,OAAO,CAAC,SAAS,EAC5B,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC;YAEhC,8BAAC,mBAAa,OAAG,CACV;QACT,8BAAC,iBAAM,IACL,OAAO,EAAC,UAAU,EAClB,SAAS,EAAE,OAAO,CAAC,SAAS,EAC5B,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC;YAE/B,8BAAC,sBAAgB,OAAG,CACb,CACR,CACJ,CAAA;AACH,CAAC;AAED,MAAM,WAAW,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACzD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAC/B,OAAO,CACL,8BAAC,qBAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,eAAe,EAAC,SAAS,EAAE,OAAO,CAAC,EAAE,IACpE,IAAA,sBAAe,EAAC,aAAa,CAAC,CACpB,CACd,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,QAAQ,GAAG,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC7C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,SAAS;QAC/B,8BAAC,aAAa,IAAC,KAAK,EAAE,KAAK,GAAI;QAC/B,uCAAK,SAAS,EAAE,OAAO,CAAC,MAAM,GAAI;QAClC,8BAAC,oBAAS,IAAC,GAAG,QAAC,SAAS,EAAE,OAAO,CAAC,UAAU;YAC1C,8BAAC,WAAW,IAAC,KAAK,EAAE,KAAK,GAAI;YAC7B,8BAAC,mBAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CACjB;QACZ,8BAAC,WAAW,IAAC,KAAK,EAAE,KAAK,GAAI;QAC7B,8BAAC,sBAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,uCAAK,SAAS,EAAE,OAAO,CAAC,MAAM,GAAI,CAC9B,CACP,CAAA;AACH,CAAC,CAAA;AAED,MAAM,sBAAsB,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACpE,OAAO,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CACzB,KAAK,CAAC,kBAAkB,CAAC,CAAC,CAAC,CACzB,8BAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI,CAC3B,CAAC,CAAC,CAAC,CACF,8BAAC,0BAAgB,IAAC,KAAK,EAAE,KAAK;QAC5B,8BAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI,CACT,CACpB,CACF,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AAEF,kBAAe,sBAAsB,CAAA"}
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@@ -1,7 +1,7 @@
|
|
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1
1
|
/// <reference types="react" />
|
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2
2
|
import { LinearGenomeViewModel } from '..';
|
|
3
3
|
type LGV = LinearGenomeViewModel;
|
|
4
|
-
declare const
|
|
4
|
+
declare const _default: ({ model }: {
|
|
5
5
|
model: LGV;
|
|
6
6
|
}) => JSX.Element;
|
|
7
|
-
export default
|
|
7
|
+
export default _default;
|
|
@@ -37,6 +37,7 @@ const Close_1 = __importDefault(require("@mui/icons-material/Close"));
|
|
|
37
37
|
// locals
|
|
38
38
|
const RefNameAutocomplete_1 = __importDefault(require("./RefNameAutocomplete"));
|
|
39
39
|
const util_2 = require("./util");
|
|
40
|
+
// lazies
|
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const useStyles = (0, mui_1.makeStyles)()(theme => ({
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importFormContainer: {
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exports.default = (0, mobx_react_1.observer)(function ({ model }) {
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const session = (0, util_1.getSession)(model);
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? assembly === null || assembly === void 0 ? void 0 : assembly.error
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: 'No configured assemblies';
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const
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(allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
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@@ -146,24 +149,18 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
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}, localStorageKey: "lgv", session: session, selected: selectedAsm }))),
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react_1.default.createElement(material_1.Grid, { item: true }, selectedAsm ? (assemblyError ? (react_1.default.createElement(Close_1.default, { style: { color: 'red' } })) : value ? (react_1.default.createElement(material_1.FormControl, null,
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react_1.default.createElement(ui_1.AssemblySelector, { onChange: val => setSelectedAsm(val), localStorageKey: "lgv", session: session, selected: selectedAsm }))),
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react_1.default.createElement(material_1.Grid, { item: true }, selectedAsm ? (assemblyError ? (react_1.default.createElement(Close_1.default, { style: { color: 'red' } })) : assemblyLoaded ? (react_1.default.createElement(material_1.FormControl, null,
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}), model: model, assemblyName:
|
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minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
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}), model: model, assemblyName: selectedAsm, value: value, minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
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variant: 'outlined',
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} }))) : (react_1.default.createElement(material_1.CircularProgress, { role: "progressbar", size: 20, disableShrink: true }))) : null),
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} }))) : (react_1.default.createElement(material_1.CircularProgress, { size: 20, disableShrink: true }))) : null),
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react_1.default.createElement(material_1.Button, { type: "submit", disabled: !value, className: classes.button, variant: "contained", color: "primary" }, "Open")),
|
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@@ -174,5 +171,4 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
|
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}, variant: "contained", color: "secondary" }, "Show all regions in assembly")))))),
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exports.default = ImportForm;
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//# sourceMappingURL=ImportForm.js.map
|
|
@@ -1 +1 @@
|
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1
|
-
{"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ImportForm.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAwD;AACxD,uCAA0C;AAC1C,2CAAqC;AACrC,6CAA+C;AAC/C,4CAMsB;AACtB,yCAAiE;AAGjE,QAAQ;AACR,sEAAiD;AAEjD,SAAS;AACT,gFAAuD;AACvD,iCAAgD;
|
|
1
|
+
{"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ImportForm.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAwD;AACxD,uCAA0C;AAC1C,2CAAqC;AACrC,6CAA+C;AAC/C,4CAMsB;AACtB,yCAAiE;AAGjE,QAAQ;AACR,sEAAiD;AAEjD,SAAS;AACT,gFAAuD;AACvD,iCAAgD;AAGhD,SAAS;AACT,MAAM,mBAAmB,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,uBAAuB,GAAC,CAAC,CAAA;AAEvE,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,mBAAmB,EAAE;QACnB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;IACD,MAAM,EAAE;QACN,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,SAAS,EAAE;QACT,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AAIH,kBAAe,IAAA,qBAAQ,EAAC,UAAU,EAAE,KAAK,EAAkB;;IACzD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,eAAe,EAAE,iBAAiB,EAAE,GAAG,OAAO,CAAA;IACrE,MAAM,EAAE,iBAAiB,EAAE,uBAAuB,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACnE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,aAAa,CAAC,CAAC,CAAC,CAAC,CAAA;IAChE,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,IAAA,gBAAQ,GAAc,CAAA;IAClD,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;IAClD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,WAAW,CAAC,CAAA;IACjD,MAAM,aAAa,GAAG,aAAa,CAAC,MAAM;QACxC,CAAC,CAAC,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,KAAK;QACjB,CAAC,CAAC,0BAA0B,CAAA;IAC9B,MAAM,YAAY,GAAG,aAAa,IAAI,KAAK,CAAA;IAC3C,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACtC,MAAM,OAAO,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,OAAO,CAAA;IACjC,MAAM,cAAc,GAAG,CAAC,CAAC,OAAO,CAAA;IAChC,MAAM,EAAE,GAAG,OAAO,CAAC,CAAC,CAAC,MAAA,OAAO,CAAC,CAAC,CAAC,0CAAE,OAAO,CAAC,CAAC,CAAC,EAAE,CAAA;IAE7C,yEAAyE;IACzE,2EAA2E;IAC3E,yEAAyE;IACzE,wEAAwE;IACxE,oBAAoB;IACpB,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,QAAQ,CAAC,EAAE,CAAC,CAAA;IACd,CAAC,EAAE,CAAC,EAAE,EAAE,WAAW,CAAC,CAAC,CAAA;IAErB,KAAK,UAAU,WAAW,CAAC,MAAkB;QAC3C,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;QACrC,MAAM,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;QACnC,IAAI,QAAQ,EAAE;YACZ,MAAM,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAA;YACjD,IAAI,OAAO,EAAE;gBACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;aACzB;SACF;IACH,CAAC;IAED,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,KAAK,UAAU,oBAAoB,CAAC,KAAa;;QAC/C,IAAI;YACF,IAAI,CAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,gBAAgB,EAAE,MAAK,KAAK,IAAI,MAAM,CAAC,WAAW,EAAE,EAAE;gBAChE,MAAM,WAAW,CAAC,MAAM,CAAC,CAAA;aAC1B;iBAAM,IAAI,MAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,OAAO,0CAAE,MAAM,EAAE;gBAClC,KAAK,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAA;aAC1D;iBAAM;gBACL,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,IAAA,gBAAS,EAAC,KAAK,EAAE,GAAG,CAAC,CAAA;gBACzC,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,wBAAwB,KAAI,EAAE,CAAA;gBACxD,IACE,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC;oBACvB,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,EACnE;oBACA,MAAM,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,WAAW,CAAC,CAAA;iBAC/C;qBAAM;oBACL,MAAM,OAAO,GAAG,MAAM,IAAA,mBAAY,EAAC;wBACjC,WAAW,EAAE,KAAK;wBAClB,UAAU,EAAE,OAAO;wBACnB,WAAW;wBACX,iBAAiB;wBACjB,iBAAiB;wBACjB,QAAQ;qBACT,CAAC,CAAA;oBAEF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE;wBACtB,KAAK,CAAC,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,WAAW,EAAE,CAAC,CAAA;qBACrD;yBAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;wBAC/B,MAAM,WAAW,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;qBAC9B;yBAAM;wBACL,MAAM,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,WAAW,CAAC,CAAA;qBAC/C;iBACF;aACF;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IAED,wBAAwB;IACxB,4EAA4E;IAC5E,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,SAAS;QAC9B,YAAY,CAAC,CAAC,CAAC,8BAAC,iBAAY,IAAC,KAAK,EAAE,YAAY,GAAI,CAAC,CAAC,CAAC,IAAI;QAC5D,8BAAC,oBAAS,IAAC,SAAS,EAAE,OAAO,CAAC,mBAAmB;YAC/C,wCACE,QAAQ,EAAE,KAAK,EAAC,KAAK,EAAC,EAAE;oBACtB,KAAK,CAAC,cAAc,EAAE,CAAA;oBACtB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oBACzB,IAAI,KAAK,EAAE;wBACT,8BAA8B;wBAC9B,MAAM,oBAAoB,CAAC,KAAK,CAAC,CAAA;qBAClC;gBACH,CAAC;gBAED,8BAAC,eAAI,IACH,SAAS,QACT,OAAO,EAAE,CAAC,EACV,cAAc,EAAC,QAAQ,EACvB,UAAU,EAAC,QAAQ;oBAEnB,8BAAC,eAAI,IAAC,IAAI;wBACR,8BAAC,sBAAW;4BACV,8BAAC,qBAAgB,IACf,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC,EACpC,eAAe,EAAC,KAAK,EACrB,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,WAAW,GACrB,CACU,CACT;oBACP,8BAAC,eAAI,IAAC,IAAI,UACP,WAAW,CAAC,CAAC,CAAC,CACb,aAAa,CAAC,CAAC,CAAC,CACd,8BAAC,eAAS,IAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,GAAI,CACvC,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,CACnB,8BAAC,sBAAW;wBACV,8BAAC,6BAAmB,IAClB,YAAY,EAAE,WAAW,CAAC,EAAE,CAC1B,IAAA,mBAAY,EAAC;gCACX,WAAW;gCACX,QAAQ;gCACR,iBAAiB;gCACjB,iBAAiB;gCACjB,WAAW;6BACZ,CAAC,EAEJ,KAAK,EAAE,KAAK,EACZ,YAAY,EAAE,WAAW,EACzB,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,GAAG,EACb,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,EAC9B,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAC/B,cAAc,EAAE;gCACd,OAAO,EAAE,UAAU;gCACnB,UAAU,EACR,gDAAgD;6BACnD,GACD,CACU,CACf,CAAC,CAAC,CAAC,CACF,8BAAC,2BAAgB,IAAC,IAAI,EAAE,EAAE,EAAE,aAAa,SAAG,CAC7C,CACF,CAAC,CAAC,CAAC,IAAI,CACH;oBACP,8BAAC,eAAI,IAAC,IAAI;wBACR,8BAAC,sBAAW;4BACV,8BAAC,iBAAM,IACL,IAAI,EAAC,QAAQ,EACb,QAAQ,EAAE,CAAC,KAAK,EAChB,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,WAGR,CACG;wBACd,8BAAC,sBAAW;4BACV,8BAAC,iBAAM,IACL,QAAQ,EAAE,CAAC,KAAK,EAChB,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,EAAE,GAAG,EAAE;oCACZ,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oCACzB,KAAK,CAAC,wBAAwB,CAAC,WAAW,CAAC,CAAA;gCAC7C,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,mCAGV,CACG,CACT,CACF,CACF,CACG;QACX,uBAAuB,CAAC,CAAC,CAAC,CACzB,8BAAC,mBAAmB,IAClB,KAAK,EAAE,KAAK,EACZ,eAAe,EAAE,WAAW,EAC5B,WAAW,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,gBAAgB,CAAC,SAAS,EAAE,SAAS,CAAC,GAC/D,CACH,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA"}
|
|
@@ -25,7 +25,7 @@ const LinearGenomeView = (0, mobx_react_1.observer)(({ model }) => {
|
|
|
25
25
|
const { tracks, error, initialized, hasDisplayedRegions } = model;
|
|
26
26
|
const { classes } = useStyles();
|
|
27
27
|
if (!initialized && !error) {
|
|
28
|
-
return react_1.default.createElement(ui_1.LoadingEllipses, { variant: "
|
|
28
|
+
return react_1.default.createElement(ui_1.LoadingEllipses, { variant: "h6" });
|
|
29
29
|
}
|
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30
30
|
if (!hasDisplayedRegions || error) {
|
|
31
31
|
return react_1.default.createElement(ImportForm_1.default, { model: model });
|
|
@@ -29,21 +29,22 @@ Object.defineProperty(exports, "__esModule", { value: true });
|
|
|
29
29
|
const react_1 = __importStar(require("react"));
|
|
30
30
|
const mobx_react_1 = require("mobx-react");
|
|
31
31
|
const material_1 = require("@mui/material");
|
|
32
|
+
const Menu_1 = __importDefault(require("@jbrowse/core/ui/Menu"));
|
|
33
|
+
// icons
|
|
32
34
|
const ZoomIn_1 = __importDefault(require("@mui/icons-material/ZoomIn"));
|
|
33
35
|
const ZoomOut_1 = __importDefault(require("@mui/icons-material/ZoomOut"));
|
|
34
36
|
const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
|
|
35
|
-
const Menu_1 = __importDefault(require("@jbrowse/core/ui/Menu"));
|
|
36
37
|
const MiniControls = (0, mobx_react_1.observer)((props) => {
|
|
37
38
|
const { model } = props;
|
|
38
39
|
const { bpPerPx, maxBpPerPx, minBpPerPx, scaleFactor, hideHeader } = model;
|
|
39
40
|
const [anchorEl, setAnchorEl] = (0, react_1.useState)();
|
|
40
41
|
return hideHeader ? (react_1.default.createElement("div", { style: { position: 'absolute', right: '0px', zIndex: '1001' } },
|
|
41
42
|
react_1.default.createElement(material_1.Paper, { style: { background: '#aaa7' } },
|
|
42
|
-
react_1.default.createElement(material_1.IconButton, {
|
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43
|
+
react_1.default.createElement(material_1.IconButton, { onClick: event => setAnchorEl(event.currentTarget) },
|
|
43
44
|
react_1.default.createElement(KeyboardArrowDown_1.default, { fontSize: "small" })),
|
|
44
|
-
react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1
|
|
45
|
+
react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1 },
|
|
45
46
|
react_1.default.createElement(ZoomOut_1.default, { fontSize: "small" })),
|
|
46
|
-
react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1
|
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47
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+
react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1 },
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react_1.default.createElement(ZoomIn_1.default, { fontSize: "small" })),
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react_1.default.createElement(Menu_1.default, { anchorEl: anchorEl, open: Boolean(anchorEl), onMenuItemClick: (_, callback) => {
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callback();
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@@ -1 +1 @@
|
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1
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-
{"version":3,"file":"MiniControls.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/MiniControls.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AACrC,4CAAiD;AACjD,wEAA+C;AAC/C,0EAAiD;AACjD,8FAA6D;
|
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1
|
+
{"version":3,"file":"MiniControls.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/MiniControls.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AACrC,4CAAiD;AACjD,iEAAwC;AAExC,QAAQ;AACR,wEAA+C;AAC/C,0EAAiD;AACjD,8FAA6D;AAK7D,MAAM,YAAY,GAAG,IAAA,qBAAQ,EAAC,CAAC,KAAuC,EAAE,EAAE;IACxE,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,OAAO,EAAE,UAAU,EAAE,UAAU,EAAE,WAAW,EAAE,UAAU,EAAE,GAAG,KAAK,CAAA;IAC1E,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,IAAA,gBAAQ,GAAe,CAAA;IAEvD,OAAO,UAAU,CAAC,CAAC,CAAC,CAClB,uCAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE;QAChE,8BAAC,gBAAK,IAAC,KAAK,EAAE,EAAE,UAAU,EAAE,OAAO,EAAE;YACnC,8BAAC,qBAAU,IAAC,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,aAAa,CAAC;gBAC5D,8BAAC,2BAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;YAEb,8BAAC,qBAAU,mBACG,UAAU,EACtB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,GAAG,CAAC,CAAC,EACtC,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC;gBAE7D,8BAAC,iBAAO,IAAC,QAAQ,EAAC,OAAO,GAAG,CACjB;YACb,8BAAC,qBAAU,mBACG,SAAS,EACrB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,EAC5C,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC;gBAE7D,8BAAC,gBAAM,IAAC,QAAQ,EAAC,OAAO,GAAG,CAChB;YACb,8BAAC,cAAI,IACH,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,OAAO,CAAC,QAAQ,CAAC,EACvB,eAAe,EAAE,CAAC,CAAC,EAAE,QAAQ,EAAE,EAAE;oBAC/B,QAAQ,EAAE,CAAA;oBACV,WAAW,CAAC,SAAS,CAAC,CAAA;gBACxB,CAAC,EACD,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,SAAS,CAAC,EACrC,SAAS,EAAE,KAAK,CAAC,SAAS,EAAE,GAC5B,CACI,CACJ,CACP,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AAEF,kBAAe,YAAY,CAAA"}
|
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@@ -2,10 +2,9 @@ import React from 'react';
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2
2
|
import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
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3
|
import { LinearGenomeViewModel } from '..';
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|
type LGV = LinearGenomeViewModel;
|
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-
declare
|
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5
|
+
declare const _default: ({ model, overview, ControlComponent, }: {
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model: LGV;
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7
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overview: Base1DViewModel;
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ControlComponent?: React.ReactElement;
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|
-
})
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-
declare const _default: typeof OverviewRubberband;
|
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8
|
+
ControlComponent?: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
|
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9
|
+
}) => JSX.Element;
|
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10
|
export default _default;
|
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@@ -47,7 +47,7 @@ const useStyles = (0, mui_1.makeStyles)()({
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|
zIndex: 10,
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48
|
},
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|
});
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|
-
const HoverTooltip = (0, mobx_react_1.observer)(({ model, open, guideX, overview, })
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const HoverTooltip = (0, mobx_react_1.observer)(function ({ model, open, guideX, overview, }) {
|
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var _a;
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|
const { classes } = useStyles();
|
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|
const { cytobandOffset } = model;
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@@ -58,11 +58,9 @@ const HoverTooltip = (0, mobx_react_1.observer)(({ model, open, guideX, overview
|
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px.coord < f.get('end') &&
|
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|
px.refName === assembly.getCanonicalRefName(f.get('refName')));
|
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|
return (react_1.default.createElement(material_1.Tooltip, { open: open, placement: "top", title: [(0, util_1.stringify)(px), cytoband === null || cytoband === void 0 ? void 0 : cytoband.get('name')].join(' '), arrow: true },
|
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61
|
-
react_1.default.createElement("div", { className: classes.guide, style: {
|
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|
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left: guideX,
|
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-
} })));
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61
|
+
react_1.default.createElement("div", { className: classes.guide, style: { left: guideX } })));
|
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62
|
});
|
|
65
|
-
function OverviewRubberband({ model, overview, ControlComponent = react_1.default.createElement("div", null), }) {
|
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|
+
exports.default = (0, mobx_react_1.observer)(function OverviewRubberband({ model, overview, ControlComponent = react_1.default.createElement("div", null), }) {
|
|
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64
|
const { cytobandOffset } = model;
|
|
67
65
|
const [startX, setStartX] = (0, react_1.useState)();
|
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68
66
|
const [currentX, setCurrentX] = (0, react_1.useState)();
|
|
@@ -135,7 +133,7 @@ function OverviewRubberband({ model, overview, ControlComponent = react_1.defaul
|
|
|
135
133
|
if (startX === undefined) {
|
|
136
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|
return (react_1.default.createElement("div", { style: { position: 'relative' } },
|
|
137
135
|
guideX !== undefined ? (react_1.default.createElement(HoverTooltip, { model: model, open: !mouseDragging, overview: overview, guideX: guideX })) : null,
|
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|
-
react_1.default.createElement("div", { className: classes.rubberbandControl,
|
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136
|
+
react_1.default.createElement("div", { className: classes.rubberbandControl, ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
|
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137
|
}
|
|
140
138
|
let left = startX || 0;
|
|
141
139
|
let width = 0;
|
|
@@ -149,14 +147,13 @@ function OverviewRubberband({ model, overview, ControlComponent = react_1.defaul
|
|
|
149
147
|
if (startX) {
|
|
150
148
|
leftBpOffset = overview.pxToBp(startX - cytobandOffset);
|
|
151
149
|
rightBpOffset = overview.pxToBp(startX + width - cytobandOffset);
|
|
152
|
-
if (currentX && currentX < startX) {
|
|
150
|
+
if (currentX !== undefined && currentX < startX) {
|
|
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|
;
|
|
154
152
|
[leftBpOffset, rightBpOffset] = [rightBpOffset, leftBpOffset];
|
|
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|
}
|
|
156
154
|
}
|
|
157
155
|
return (react_1.default.createElement("div", { style: { position: 'relative' } },
|
|
158
|
-
leftBpOffset && rightBpOffset ? (react_1.default.createElement(RubberbandSpan_1.default, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, width: width, left: left })) : null,
|
|
159
|
-
react_1.default.createElement("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl,
|
|
160
|
-
}
|
|
161
|
-
exports.default = (0, mobx_react_1.observer)(OverviewRubberband);
|
|
156
|
+
leftBpOffset && rightBpOffset ? (react_1.default.createElement(RubberbandSpan_1.default, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, width: Math.abs(width), left: left })) : null,
|
|
157
|
+
react_1.default.createElement("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl, ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
|
|
158
|
+
});
|
|
162
159
|
//# sourceMappingURL=OverviewRubberband.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"OverviewRubberband.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/OverviewRubberband.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAA0D;AAC1D,4CAAuC;AACvC,uCAA0C;AAC1C,6CAA0D;AAC1D,2CAAqC;
|
|
1
|
+
{"version":3,"file":"OverviewRubberband.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/OverviewRubberband.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAA0D;AAC1D,4CAAuC;AACvC,uCAA0C;AAC1C,6CAA0D;AAC1D,2CAAqC;AAKrC,sEAA6C;AAC7C,iCAAqC;AAIrC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,iBAAiB,EAAE;QACjB,MAAM,EAAE,WAAW;QACnB,KAAK,EAAE,MAAM;QACb,SAAS,EAAE,CAAC;KACb;IACD,KAAK,EAAE;QACL,aAAa,EAAE,MAAM;QACrB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,CAAC;QACR,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,EAAE;KACX;CACF,CAAC,CAAA;AAEF,MAAM,YAAY,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACtC,KAAK,EACL,IAAI,EACJ,MAAM,EACN,QAAQ,GAMT;;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAChC,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAE7C,MAAM,EAAE,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,GAAG,cAAc,CAAC,CAAA;IACnD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,EAAE,CAAC,YAAY,CAAC,CAAA;IACrD,MAAM,QAAQ,GAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,SAAS,0CAAE,IAAI,CACxC,CAAC,CAAC,EAAE,CACF,EAAE,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC;QACzB,EAAE,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC;QACvB,EAAE,CAAC,OAAO,KAAK,QAAQ,CAAC,mBAAmB,CAAC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAChE,CAAA;IAED,OAAO,CACL,8BAAC,kBAAO,IACN,IAAI,EAAE,IAAI,EACV,SAAS,EAAC,KAAK,EACf,KAAK,EAAE,CAAC,IAAA,gBAAS,EAAC,EAAE,CAAC,EAAE,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,EACvD,KAAK;QAEL,uCAAK,SAAS,EAAE,OAAO,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,GAAI,CAClD,CACX,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,IAAA,qBAAQ,EAAC,SAAS,kBAAkB,CAAC,EAClD,KAAK,EACL,QAAQ,EACR,gBAAgB,GAAG,0CAAO,GAK3B;IACC,MAAM,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAChC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,IAAA,gBAAQ,GAAU,CAAA;IAC9C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,IAAA,gBAAQ,GAAU,CAAA;IAClD,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,IAAA,gBAAQ,GAAU,CAAA;IAC9C,MAAM,WAAW,GAAG,IAAA,cAAM,EAAiB,IAAI,CAAC,CAAA;IAChD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,aAAa,GAAG,MAAM,KAAK,SAAS,CAAA;IAE1C,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,SAAS,eAAe,CAAC,KAAiB;YACxC,MAAM,GAAG,GAAG,WAAW,CAAC,OAAO,CAAA;YAC/B,IAAI,GAAG,IAAI,aAAa,EAAE;gBACxB,WAAW,CAAC,IAAA,mBAAY,EAAC,KAAK,EAAE,GAAG,CAAC,CAAC,CAAA;aACtC;QACH,CAAC;QAED,SAAS,aAAa;YACpB,iBAAiB;YACjB,IAAI,MAAM,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;gBAClD,IAAI,IAAI,CAAC,GAAG,CAAC,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,EAAE;oBACnC,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAA;oBACvC,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAA;oBACxC,KAAK,CAAC,MAAM,CACV,QAAQ,CAAC,MAAM,CAAC,IAAI,GAAG,cAAc,CAAC,EACtC,QAAQ,CAAC,MAAM,CAAC,KAAK,GAAG,cAAc,CAAC,CACxC,CAAA;iBACF;aACF;YAED,eAAe;YACf,IAAI,MAAM,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;gBAClD,MAAM,KAAK,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,GAAG,cAAc,CAAC,CAAA;gBACtD,IAAI,CAAC,KAAK,CAAC,OAAO,EAAE;oBAClB,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAC,MAAM,CAAC,0BAA0B,CAAC,CAAA;oBACpD,OAAO,CAAC,KAAK,CAAC,0BAA0B,EAAE,KAAK,CAAC,CAAA;iBACjD;qBAAM;oBACL,KAAK,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,KAAK,CAAC,KAAK,CAAC,CAAA;iBACpE;aACF;YACD,SAAS,CAAC,SAAS,CAAC,CAAA;YACpB,WAAW,CAAC,SAAS,CAAC,CAAA;YAEtB,IAAI,MAAM,KAAK,SAAS,EAAE;gBACxB,SAAS,CAAC,SAAS,CAAC,CAAA;aACrB;QACH,CAAC;QAED,SAAS,aAAa,CAAC,KAAoB;YACzC,IAAI,KAAK,CAAC,GAAG,KAAK,QAAQ,EAAE;gBAC1B,SAAS,CAAC,SAAS,CAAC,CAAA;gBACpB,WAAW,CAAC,SAAS,CAAC,CAAA;aACvB;QACH,CAAC;QAED,IAAI,aAAa,EAAE;YACjB,MAAM,CAAC,gBAAgB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;YAC3D,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YACvD,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YACvD,OAAO,GAAG,EAAE;gBACV,MAAM,CAAC,mBAAmB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;gBAC9D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;gBAC1D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YAC5D,CAAC,CAAA;SACF;QACD,OAAO,GAAG,EAAE,GAAE,CAAC,CAAA;IACjB,CAAC,EAAE,CAAC,aAAa,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,cAAc,CAAC,CAAC,CAAA;IAEtE,SAAS,SAAS,CAAC,KAAuC;QACxD,KAAK,CAAC,cAAc,EAAE,CAAA;QACtB,KAAK,CAAC,eAAe,EAAE,CAAA;QACvB,SAAS,CAAC,IAAA,mBAAY,EAAC,KAAK,EAAE,WAAW,CAAC,OAAO,CAAC,CAAC,CAAA;IACrD,CAAC;IAED,SAAS,SAAS,CAAC,KAAuC;QACxD,SAAS,CAAC,IAAA,mBAAY,EAAC,KAAK,EAAE,WAAW,CAAC,OAAO,CAAC,CAAC,CAAA;IACrD,CAAC;IAED,SAAS,QAAQ;QACf,SAAS,CAAC,SAAS,CAAC,CAAA;IACtB,CAAC;IAED,IAAI,MAAM,KAAK,SAAS,EAAE;QACxB,OAAO,CACL,uCAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;YACjC,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,CACtB,8BAAC,YAAY,IACX,KAAK,EAAE,KAAK,EACZ,IAAI,EAAE,CAAC,aAAa,EACpB,QAAQ,EAAE,QAAQ,EAClB,MAAM,EAAE,MAAM,GACd,CACH,CAAC,CAAC,CAAC,IAAI;YACR,uCACE,SAAS,EAAE,OAAO,CAAC,iBAAiB,EACpC,GAAG,EAAE,WAAW,EAChB,WAAW,EAAE,SAAS,EACtB,UAAU,EAAE,QAAQ,EACpB,WAAW,EAAE,SAAS,IAErB,gBAAgB,CACb,CACF,CACP,CAAA;KACF;IAED,IAAI,IAAI,GAAG,MAAM,IAAI,CAAC,CAAA;IACtB,IAAI,KAAK,GAAG,CAAC,CAAA;IACb,IAAI,MAAM,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;QAClD,IAAI,GAAG,QAAQ,GAAG,MAAM,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAA;QAC5C,KAAK,GAAG,QAAQ,GAAG,MAAM,CAAA;KAC1B;IACD,yCAAyC;IACzC,IAAI,YAAY,CAAA;IAChB,IAAI,aAAa,CAAA;IACjB,IAAI,MAAM,EAAE;QACV,YAAY,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,GAAG,cAAc,CAAC,CAAA;QACvD,aAAa,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,GAAG,KAAK,GAAG,cAAc,CAAC,CAAA;QAChE,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,GAAG,MAAM,EAAE;YAC/C,CAAC;YAAA,CAAC,YAAY,EAAE,aAAa,CAAC,GAAG,CAAC,aAAa,EAAE,YAAY,CAAC,CAAA;SAC/D;KACF;IAED,OAAO,CACL,uCAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;QACjC,YAAY,IAAI,aAAa,CAAC,CAAC,CAAC,CAC/B,8BAAC,wBAAc,IACb,YAAY,EAAE,YAAY,EAC1B,aAAa,EAAE,aAAa,EAC5B,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,EACtB,IAAI,EAAE,IAAI,GACV,CACH,CAAC,CAAC,CAAC,IAAI;QACR,sDACc,qBAAqB,EACjC,SAAS,EAAE,OAAO,CAAC,iBAAiB,EACpC,GAAG,EAAE,WAAW,EAChB,WAAW,EAAE,SAAS,EACtB,UAAU,EAAE,QAAQ,EACpB,WAAW,EAAE,SAAS,IAErB,gBAAgB,CACb,CACF,CACP,CAAA;AACH,CAAC,CAAC,CAAA"}
|
|
@@ -1,7 +1,5 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
2
|
import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
|
|
3
|
-
import { ContentBlock } from '@jbrowse/core/util/blockTypes';
|
|
4
|
-
import { Assembly } from '@jbrowse/core/assemblyManager/assembly';
|
|
5
3
|
import { LinearGenomeViewModel } from '..';
|
|
6
4
|
declare const Polygon: ({ model, overview, useOffset, }: {
|
|
7
5
|
model: LGV;
|
|
@@ -9,123 +7,10 @@ declare const Polygon: ({ model, overview, useOffset, }: {
|
|
|
9
7
|
useOffset?: boolean | undefined;
|
|
10
8
|
}) => JSX.Element | null;
|
|
11
9
|
type LGV = LinearGenomeViewModel;
|
|
12
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declare const
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13
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overview: Base1DViewModel;
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14
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assembly?: ({
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15
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configuration: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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error: unknown;
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loaded: boolean;
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loadingP: Promise<void> | undefined;
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volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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21
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refNameAliases: {
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[x: string]: string;
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23
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} | undefined;
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lowerCaseRefNameAliases: {
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[x: string]: string;
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} | undefined;
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27
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cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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} & {
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readonly initialized: boolean;
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readonly name: string;
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31
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readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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32
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readonly aliases: string[];
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33
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readonly displayName: string | undefined;
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34
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hasName(name: string): boolean;
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35
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readonly allAliases: string[];
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36
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readonly allRefNames: string[] | undefined;
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37
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readonly lowerCaseRefNames: string[] | undefined;
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38
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readonly allRefNamesWithLowerCase: string[] | undefined;
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39
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readonly rpcManager: any;
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40
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readonly refNameColors: string[];
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41
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} & {
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42
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readonly refNames: string[] | undefined;
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43
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} & {
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44
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getCanonicalRefName(refName: string): string;
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45
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getRefNameColor(refName: string): string | undefined;
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46
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isValidRefName(refName: string): boolean;
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47
|
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} & {
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|
48
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setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
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49
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setError(e: unknown): void;
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50
|
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setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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|
51
|
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setRefNameAliases(aliases: {
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52
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[x: string]: string;
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|
53
|
-
}, lcAliases: {
|
|
54
|
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[x: string]: string;
|
|
55
|
-
}): void;
|
|
56
|
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setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
57
|
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setLoadingP(p?: Promise<void> | undefined): void;
|
|
58
|
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load(): Promise<void>;
|
|
59
|
-
loadPre(): Promise<void>;
|
|
60
|
-
} & {
|
|
61
|
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getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
62
|
-
getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
|
|
63
|
-
[x: string]: string;
|
|
64
|
-
}>;
|
|
65
|
-
getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
|
|
66
|
-
[x: string]: string;
|
|
67
|
-
}>;
|
|
68
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
69
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
70
|
-
}, {
|
|
71
|
-
error: unknown;
|
|
72
|
-
loaded: boolean;
|
|
73
|
-
loadingP: Promise<void> | undefined;
|
|
74
|
-
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
75
|
-
refNameAliases: {
|
|
76
|
-
[x: string]: string;
|
|
77
|
-
} | undefined;
|
|
78
|
-
lowerCaseRefNameAliases: {
|
|
79
|
-
[x: string]: string;
|
|
80
|
-
} | undefined;
|
|
81
|
-
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
82
|
-
} & {
|
|
83
|
-
readonly initialized: boolean;
|
|
84
|
-
readonly name: string;
|
|
85
|
-
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
86
|
-
readonly aliases: string[];
|
|
87
|
-
readonly displayName: string | undefined;
|
|
88
|
-
hasName(name: string): boolean;
|
|
89
|
-
readonly allAliases: string[];
|
|
90
|
-
readonly allRefNames: string[] | undefined;
|
|
91
|
-
readonly lowerCaseRefNames: string[] | undefined;
|
|
92
|
-
readonly allRefNamesWithLowerCase: string[] | undefined;
|
|
93
|
-
readonly rpcManager: any;
|
|
94
|
-
readonly refNameColors: string[];
|
|
95
|
-
} & {
|
|
96
|
-
readonly refNames: string[] | undefined;
|
|
97
|
-
} & {
|
|
98
|
-
getCanonicalRefName(refName: string): string;
|
|
99
|
-
getRefNameColor(refName: string): string | undefined;
|
|
100
|
-
isValidRefName(refName: string): boolean;
|
|
101
|
-
} & {
|
|
102
|
-
setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
|
|
103
|
-
setError(e: unknown): void;
|
|
104
|
-
setRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
105
|
-
setRefNameAliases(aliases: {
|
|
106
|
-
[x: string]: string;
|
|
107
|
-
}, lcAliases: {
|
|
108
|
-
[x: string]: string;
|
|
109
|
-
}): void;
|
|
110
|
-
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
111
|
-
setLoadingP(p?: Promise<void> | undefined): void;
|
|
112
|
-
load(): Promise<void>;
|
|
113
|
-
loadPre(): Promise<void>;
|
|
114
|
-
} & {
|
|
115
|
-
getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
116
|
-
getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
|
|
117
|
-
[x: string]: string;
|
|
118
|
-
}>;
|
|
119
|
-
getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
|
|
120
|
-
[x: string]: string;
|
|
121
|
-
}>;
|
|
122
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
123
|
-
block: ContentBlock;
|
|
124
|
-
}) => JSX.Element;
|
|
125
|
-
declare function OverviewScalebar({ model, children, }: {
|
|
10
|
+
declare const _default: ({ model, children, }: {
|
|
126
11
|
model: LGV;
|
|
127
12
|
children: React.ReactNode;
|
|
128
|
-
})
|
|
129
|
-
declare const _default: typeof OverviewScalebar;
|
|
13
|
+
}) => JSX.Element;
|
|
130
14
|
export default _default;
|
|
131
|
-
export {
|
|
15
|
+
export { Polygon };
|
|
16
|
+
export { default as Cytobands } from './Cytobands';
|