@jbrowse/plugin-linear-genome-view 2.3.4 → 2.4.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +2 -3
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +4 -4
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -1
- package/dist/BaseLinearDisplay/components/Block.js +1 -1
- package/dist/BaseLinearDisplay/components/Block.js.map +1 -1
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +11 -11
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +82 -7
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +43 -28
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
- package/dist/BaseLinearDisplay/models/configSchema.js +8 -0
- package/dist/BaseLinearDisplay/models/configSchema.js.map +1 -1
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -1
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +9 -5
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
- package/dist/BaseLinearDisplay/models/util.js +2 -2
- package/dist/BaseLinearDisplay/models/util.js.map +1 -1
- package/dist/LaunchLinearGenomeView/index.js +1 -1
- package/dist/LaunchLinearGenomeView/index.js.map +1 -1
- package/dist/LinearBareDisplay/index.d.ts +2 -3
- package/dist/LinearBareDisplay/index.js +4 -2
- package/dist/LinearBareDisplay/index.js.map +1 -1
- package/dist/LinearBareDisplay/model.d.ts +61 -3
- package/dist/LinearBasicDisplay/index.d.ts +2 -3
- package/dist/LinearBasicDisplay/index.js +4 -2
- package/dist/LinearBasicDisplay/index.js.map +1 -1
- package/dist/LinearBasicDisplay/model.d.ts +82 -14
- package/dist/LinearGenomeView/components/CenterLine.js +2 -2
- package/dist/LinearGenomeView/components/CenterLine.js.map +1 -1
- package/dist/LinearGenomeView/components/Cytobands.d.ts +118 -0
- package/dist/LinearGenomeView/components/Cytobands.js +92 -0
- package/dist/LinearGenomeView/components/Cytobands.js.map +1 -0
- package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +24 -3
- package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/Gridlines.js +1 -1
- package/dist/LinearGenomeView/components/Gridlines.js.map +1 -1
- package/dist/LinearGenomeView/components/Header.js +3 -4
- package/dist/LinearGenomeView/components/Header.js.map +1 -1
- package/dist/LinearGenomeView/components/ImportForm.d.ts +2 -2
- package/dist/LinearGenomeView/components/ImportForm.js +15 -19
- package/dist/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.js +1 -1
- package/dist/LinearGenomeView/components/MiniControls.js +5 -4
- package/dist/LinearGenomeView/components/MiniControls.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewRubberband.d.ts +3 -4
- package/dist/LinearGenomeView/components/OverviewRubberband.js +8 -11
- package/dist/LinearGenomeView/components/OverviewRubberband.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +4 -119
- package/dist/LinearGenomeView/components/OverviewScalebar.js +19 -103
- package/dist/LinearGenomeView/components/OverviewScalebar.js.map +1 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +2 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +35 -31
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
- package/dist/LinearGenomeView/components/RubberbandSpan.d.ts +2 -2
- package/dist/LinearGenomeView/components/RubberbandSpan.js +4 -18
- package/dist/LinearGenomeView/components/RubberbandSpan.js.map +1 -1
- package/dist/LinearGenomeView/components/SearchBox.js +3 -3
- package/dist/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/dist/LinearGenomeView/components/TrackLabel.js +6 -7
- package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +2 -3
- package/dist/LinearGenomeView/components/TracksContainer.js +9 -8
- package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -1
- package/dist/LinearGenomeView/components/ZoomControls.js +5 -4
- package/dist/LinearGenomeView/components/ZoomControls.js.map +1 -1
- package/dist/LinearGenomeView/components/hooks.d.ts +6 -1
- package/dist/LinearGenomeView/components/hooks.js +1 -1
- package/dist/LinearGenomeView/components/hooks.js.map +1 -1
- package/dist/LinearGenomeView/components/util.d.ts +6 -0
- package/dist/LinearGenomeView/components/util.js +11 -1
- package/dist/LinearGenomeView/components/util.js.map +1 -1
- package/dist/LinearGenomeView/index.js +8 -6
- package/dist/LinearGenomeView/index.js.map +1 -1
- package/dist/LinearGenomeView/model.d.ts +18 -12
- package/dist/LinearGenomeView/model.js +31 -34
- package/dist/LinearGenomeView/model.js.map +1 -1
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +6 -0
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +13 -0
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +10 -0
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +55 -0
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +12 -0
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +57 -0
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +13 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +51 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +22 -0
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +16 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +23 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +30 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.js.map +1 -0
- package/dist/LinearGenomeView/util.js +2 -2
- package/dist/LinearGenomeView/util.js.map +1 -1
- package/dist/index.d.ts +157 -44
- package/dist/index.js +21 -13
- package/dist/index.js.map +1 -1
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +2 -3
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +2 -3
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -1
- package/esm/BaseLinearDisplay/components/Block.js +1 -1
- package/esm/BaseLinearDisplay/components/Block.js.map +1 -1
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +11 -11
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +82 -7
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +44 -29
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
- package/esm/BaseLinearDisplay/models/configSchema.js +8 -0
- package/esm/BaseLinearDisplay/models/configSchema.js.map +1 -1
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -1
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +9 -5
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
- package/esm/BaseLinearDisplay/models/util.js +2 -2
- package/esm/BaseLinearDisplay/models/util.js.map +1 -1
- package/esm/LaunchLinearGenomeView/index.js +1 -1
- package/esm/LaunchLinearGenomeView/index.js.map +1 -1
- package/esm/LinearBareDisplay/index.d.ts +2 -3
- package/esm/LinearBareDisplay/index.js +2 -1
- package/esm/LinearBareDisplay/index.js.map +1 -1
- package/esm/LinearBareDisplay/model.d.ts +61 -3
- package/esm/LinearBasicDisplay/index.d.ts +2 -3
- package/esm/LinearBasicDisplay/index.js +2 -1
- package/esm/LinearBasicDisplay/index.js.map +1 -1
- package/esm/LinearBasicDisplay/model.d.ts +82 -14
- package/esm/LinearGenomeView/components/CenterLine.js +2 -2
- package/esm/LinearGenomeView/components/CenterLine.js.map +1 -1
- package/esm/LinearGenomeView/components/Cytobands.d.ts +118 -0
- package/esm/LinearGenomeView/components/Cytobands.js +87 -0
- package/esm/LinearGenomeView/components/Cytobands.js.map +1 -0
- package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
- package/esm/LinearGenomeView/components/ExportSvgDialog.js +25 -4
- package/esm/LinearGenomeView/components/ExportSvgDialog.js.map +1 -1
- package/esm/LinearGenomeView/components/Gridlines.js +1 -1
- package/esm/LinearGenomeView/components/Gridlines.js.map +1 -1
- package/esm/LinearGenomeView/components/Header.js +5 -6
- package/esm/LinearGenomeView/components/Header.js.map +1 -1
- package/esm/LinearGenomeView/components/ImportForm.d.ts +2 -2
- package/esm/LinearGenomeView/components/ImportForm.js +16 -20
- package/esm/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.js +1 -1
- package/esm/LinearGenomeView/components/MiniControls.js +5 -4
- package/esm/LinearGenomeView/components/MiniControls.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewRubberband.d.ts +3 -4
- package/esm/LinearGenomeView/components/OverviewRubberband.js +8 -11
- package/esm/LinearGenomeView/components/OverviewRubberband.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +4 -119
- package/esm/LinearGenomeView/components/OverviewScalebar.js +16 -100
- package/esm/LinearGenomeView/components/OverviewScalebar.js.map +1 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete.d.ts +2 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js +36 -32
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
- package/esm/LinearGenomeView/components/RubberbandSpan.d.ts +2 -2
- package/esm/LinearGenomeView/components/RubberbandSpan.js +5 -20
- package/esm/LinearGenomeView/components/RubberbandSpan.js.map +1 -1
- package/esm/LinearGenomeView/components/SearchBox.js +3 -3
- package/esm/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/esm/LinearGenomeView/components/TrackLabel.js +6 -7
- package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/esm/LinearGenomeView/components/TracksContainer.d.ts +2 -3
- package/esm/LinearGenomeView/components/TracksContainer.js +9 -8
- package/esm/LinearGenomeView/components/TracksContainer.js.map +1 -1
- package/esm/LinearGenomeView/components/ZoomControls.js +5 -4
- package/esm/LinearGenomeView/components/ZoomControls.js.map +1 -1
- package/esm/LinearGenomeView/components/hooks.d.ts +6 -1
- package/esm/LinearGenomeView/components/hooks.js +1 -1
- package/esm/LinearGenomeView/components/hooks.js.map +1 -1
- package/esm/LinearGenomeView/components/util.d.ts +6 -0
- package/esm/LinearGenomeView/components/util.js +9 -0
- package/esm/LinearGenomeView/components/util.js.map +1 -1
- package/esm/LinearGenomeView/index.js +8 -6
- package/esm/LinearGenomeView/index.js.map +1 -1
- package/esm/LinearGenomeView/model.d.ts +18 -12
- package/esm/LinearGenomeView/model.js +24 -28
- package/esm/LinearGenomeView/model.js.map +1 -1
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.d.ts +6 -0
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.js +7 -0
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.d.ts +10 -0
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +49 -0
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +12 -0
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +47 -0
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +7 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +45 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js +16 -0
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js +10 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.d.ts +23 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +24 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.js.map +1 -0
- package/esm/LinearGenomeView/util.js +2 -2
- package/esm/LinearGenomeView/util.js.map +1 -1
- package/esm/index.d.ts +157 -44
- package/esm/index.js +9 -5
- package/esm/index.js.map +1 -1
- package/package.json +3 -3
- package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx +4 -3
- package/src/BaseLinearDisplay/components/Block.tsx +1 -1
- package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx +11 -12
- package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +55 -40
- package/src/BaseLinearDisplay/models/configSchema.ts +8 -0
- package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +15 -22
- package/src/BaseLinearDisplay/models/util.ts +2 -2
- package/src/LaunchLinearGenomeView/index.ts +1 -1
- package/src/LinearBareDisplay/index.ts +2 -1
- package/src/LinearBasicDisplay/index.ts +2 -1
- package/src/LinearGenomeView/components/CenterLine.tsx +2 -2
- package/src/LinearGenomeView/components/Cytobands.tsx +154 -0
- package/src/LinearGenomeView/components/ExportSvgDialog.tsx +56 -4
- package/src/LinearGenomeView/components/Gridlines.tsx +1 -1
- package/src/LinearGenomeView/components/Header.tsx +6 -13
- package/src/LinearGenomeView/components/ImportForm.tsx +17 -26
- package/src/LinearGenomeView/components/LinearGenomeView.test.tsx +8 -11
- package/src/LinearGenomeView/components/LinearGenomeView.tsx +1 -1
- package/src/LinearGenomeView/components/MiniControls.tsx +6 -7
- package/src/LinearGenomeView/components/OverviewRubberband.tsx +40 -49
- package/src/LinearGenomeView/components/OverviewScalebar.tsx +222 -385
- package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +50 -48
- package/src/LinearGenomeView/components/RubberbandSpan.tsx +8 -25
- package/src/LinearGenomeView/components/SearchBox.tsx +3 -2
- package/src/LinearGenomeView/components/TrackLabel.tsx +76 -76
- package/src/LinearGenomeView/components/TracksContainer.tsx +8 -8
- package/src/LinearGenomeView/components/ZoomControls.tsx +3 -4
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap +1230 -1200
- package/src/LinearGenomeView/components/hooks.ts +7 -1
- package/src/LinearGenomeView/components/util.ts +13 -0
- package/src/LinearGenomeView/index.test.ts +12 -13
- package/src/LinearGenomeView/index.ts +8 -9
- package/src/LinearGenomeView/model.ts +41 -36
- package/src/LinearGenomeView/svgcomponents/SVGBackground.tsx +21 -0
- package/src/LinearGenomeView/svgcomponents/SVGHeader.tsx +93 -0
- package/src/LinearGenomeView/svgcomponents/SVGLinearGenomeView.tsx +114 -0
- package/src/LinearGenomeView/svgcomponents/SVGRegionSeparators.tsx +31 -0
- package/src/LinearGenomeView/svgcomponents/SVGRuler.tsx +125 -0
- package/src/LinearGenomeView/svgcomponents/SVGScalebar.tsx +57 -0
- package/src/LinearGenomeView/svgcomponents/SVGTrackLabel.tsx +47 -0
- package/src/LinearGenomeView/svgcomponents/SVGTracks.tsx +67 -0
- package/src/LinearGenomeView/util.test.ts +7 -4
- package/src/LinearGenomeView/util.ts +3 -3
- package/src/index.ts +22 -23
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +0 -4
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +0 -141
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +0 -1
- package/dist/LinearGenomeView/components/Ruler.d.ts +0 -11
- package/dist/LinearGenomeView/components/Ruler.js +0 -39
- package/dist/LinearGenomeView/components/Ruler.js.map +0 -1
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +0 -4
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +0 -134
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +0 -1
- package/esm/LinearGenomeView/components/Ruler.d.ts +0 -11
- package/esm/LinearGenomeView/components/Ruler.js +0 -34
- package/esm/LinearGenomeView/components/Ruler.js.map +0 -1
- package/src/LinearGenomeView/components/LinearGenomeViewSvg.tsx +0 -307
- package/src/LinearGenomeView/components/Ruler.tsx +0 -78
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const OverviewRubberband_1 = __importDefault(require("./OverviewRubberband"));
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const Polygon = (0, mobx_react_1.observer)(function ({ model, overview, useOffset = true, }) {
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return (react_1.default.createElement("path", { key: key, d: leftRoundedRect(Math.min(start, end), 0, Math.abs(end - start), __1.HEADER_OVERVIEW_HEIGHT, 8), fill: colorMap[type] }));
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return (react_1.default.createElement("path", { key: key, d: rightRoundedRect(Math.min(start, end), 0, Math.abs(end - start) - 2, __1.HEADER_OVERVIEW_HEIGHT, 8), fill: colorMap[type] }));
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return (react_1.default.createElement("rect", { key: key, x: Math.min(start, end), y: 0, width: Math.abs(end - start), height: __1.HEADER_OVERVIEW_HEIGHT, fill: colorMap[type] }));
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|
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|
|
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})));
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|
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});
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|
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|
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exports.Cytobands = Cytobands;
|
|
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|
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const OverviewBox = (0, mobx_react_1.observer)(({ scale, model, block, overview, }) => {
|
|
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|
+
const OverviewBox = (0, mobx_react_1.observer)(function ({ scale, model, block, overview, }) {
|
|
197
109
|
const { classes, cx } = useStyles();
|
|
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|
+
const theme = (0, material_1.useTheme)();
|
|
198
111
|
const { cytobandOffset, showCytobands } = model;
|
|
199
112
|
const { start, end, reversed, refName, assemblyName } = block;
|
|
200
113
|
const { majorPitch } = (0, util_2.chooseGridPitch)(scale, 120, 15);
|
|
@@ -206,11 +119,13 @@ const OverviewBox = (0, mobx_react_1.observer)(({ scale, model, block, overview,
|
|
|
206
119
|
const offsetLabel = (i + 1) * majorPitch;
|
|
207
120
|
tickLabels.push(reversed ? end - offsetLabel : start + offsetLabel);
|
|
208
121
|
}
|
|
209
|
-
const canDisplayCytobands = showCytobands && getCytobands(assembly, block.refName).length;
|
|
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|
+
const canDisplayCytobands = showCytobands && (0, util_3.getCytobands)(assembly, block.refName).length;
|
|
210
123
|
return (react_1.default.createElement("div", null,
|
|
211
124
|
react_1.default.createElement(material_1.Typography, { style: {
|
|
212
125
|
left: block.offsetPx + 3,
|
|
213
|
-
color: canDisplayCytobands
|
|
126
|
+
color: canDisplayCytobands
|
|
127
|
+
? theme.palette.primary.contrastText
|
|
128
|
+
: refNameColor,
|
|
214
129
|
}, className: classes.scalebarRefName }, refName),
|
|
215
130
|
react_1.default.createElement("div", { className: cx(classes.scalebarContig, canDisplayCytobands
|
|
216
131
|
? undefined
|
|
@@ -229,9 +144,9 @@ const OverviewBox = (0, mobx_react_1.observer)(({ scale, model, block, overview,
|
|
|
229
144
|
} }, (0, util_1.getTickDisplayStr)(tickLabel, overview.bpPerPx))))
|
|
230
145
|
: null,
|
|
231
146
|
canDisplayCytobands ? (react_1.default.createElement("svg", { style: { width: '100%' } },
|
|
232
|
-
react_1.default.createElement(
|
|
147
|
+
react_1.default.createElement(Cytobands_1.default, { overview: overview, assembly: assembly, block: block }))) : null)));
|
|
233
148
|
});
|
|
234
|
-
const Scalebar = (0, mobx_react_1.observer)(({ model, scale, overview, })
|
|
149
|
+
const Scalebar = (0, mobx_react_1.observer)(function ({ model, scale, overview, }) {
|
|
235
150
|
const { classes } = useStyles();
|
|
236
151
|
const theme = (0, material_1.useTheme)();
|
|
237
152
|
const { dynamicBlocks, showCytobands, cytobandOffset } = model;
|
|
@@ -270,7 +185,7 @@ const Scalebar = (0, mobx_react_1.observer)(({ model, scale, overview, }) => {
|
|
|
270
185
|
} })) : (react_1.default.createElement(OverviewBox, { scale: scale, block: block, model: model, overview: overview, key: `${JSON.stringify(block)}-${idx}` }));
|
|
271
186
|
})));
|
|
272
187
|
});
|
|
273
|
-
function OverviewScalebar({ model, children, }) {
|
|
188
|
+
exports.default = (0, mobx_react_1.observer)(function OverviewScalebar({ model, children, }) {
|
|
274
189
|
const { classes } = useStyles();
|
|
275
190
|
const { totalBp, width, cytobandOffset, displayedRegions } = model;
|
|
276
191
|
const overview = Base1DViewModel_1.default.create({
|
|
@@ -288,6 +203,7 @@ function OverviewScalebar({ model, children, }) {
|
|
|
288
203
|
react_1.default.createElement("svg", { height: __1.HEADER_BAR_HEIGHT, className: classes.overviewSvg },
|
|
289
204
|
react_1.default.createElement(Polygon, { model: model, overview: overview })),
|
|
290
205
|
children)));
|
|
291
|
-
}
|
|
292
|
-
|
|
206
|
+
});
|
|
207
|
+
var Cytobands_2 = require("./Cytobands");
|
|
208
|
+
Object.defineProperty(exports, "Cytobands", { enumerable: true, get: function () { return __importDefault(Cytobands_2).default; } });
|
|
293
209
|
//# sourceMappingURL=OverviewScalebar.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
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1
|
+
{"version":3,"file":"OverviewScalebar.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/OverviewScalebar.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,4CAA2D;AAC3D,uCAA0C;AAC1C,2CAAqC;AAErC,OAAO;AACP,yFAAgF;AAChF,6CAAkE;AAClE,8DAA4D;AAE5D,SAAS;AACT,0BAIW;AACX,kCAAyC;AACzC,8EAAqD;AACrD,4DAAmC;AACnC,iCAAqC;AAErC,MAAM,cAAc,GAAG,CAAC,CAAA;AAExB,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,QAAQ,EAAE;QACR,MAAM,EAAE,0BAAsB;KAC/B;IACD,cAAc,EAAE;QACd,MAAM,EAAE,WAAW;KACpB;IACD,cAAc,EAAE;QACd,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;QACjD,QAAQ,EAAE,UAAU;QACpB,GAAG,EAAE,CAAC;QACN,MAAM,EAAE,0BAAsB;QAC9B,QAAQ,EAAE,QAAQ;KACnB;IACD,qBAAqB,EAAE;QACrB,eAAe,EAAE,6IAA6I,KAAK,CAAC,OAAO,CAAC,OAAO,mBAAmB;QACtM,gBAAgB,EAAE,QAAQ;KAC3B;IACD,qBAAqB,EAAE;QACrB,eAAe,EAAE,yIAAyI,KAAK,CAAC,OAAO,CAAC,OAAO,mBAAmB;QAClM,gBAAgB,EAAE,QAAQ;KAC3B;IAED,eAAe,EAAE;QACf,QAAQ,EAAE,UAAU;QACpB,UAAU,EAAE,MAAM;QAClB,aAAa,EAAE,MAAM;QACrB,MAAM,EAAE,GAAG;KACZ;IACD,aAAa,EAAE;QACb,MAAM,EAAE,0BAAsB;QAC9B,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,MAAM;QACf,cAAc,EAAE,QAAQ;QACxB,aAAa,EAAE,MAAM;KACtB;IACD,qBAAqB,EAAE;QACrB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,0BAAsB;QAC9B,aAAa,EAAE,MAAM;QACrB,MAAM,EAAE,GAAG;QACX,MAAM,EAAE,WAAW;KACpB;IACD,QAAQ,EAAE;QACR,MAAM,EAAE,qBAAiB;QACzB,QAAQ,EAAE,UAAU;KACrB;IACD,WAAW,EAAE;QACX,KAAK,EAAE,MAAM;QACb,QAAQ,EAAE,UAAU;KACrB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,OAAO,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACjC,KAAK,EACL,QAAQ,EACR,SAAS,GAAG,IAAI,GAKjB;IACC,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IACxB,MAAM,UAAU,GAAG,MAAM,CAAC,SAAS,CAAC,CAAA;IACpC,MAAM,EAAE,uBAAuB,EAAE,QAAQ,EAAE,aAAa,EAAE,cAAc,EAAE,GACxE,KAAK,CAAA;IACP,MAAM,EAAE,aAAa,EAAE,0BAA0B,EAAE,GAAG,aAAa,CAAA;IAEnE,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;IAC3C,MAAM,YAAY,GAAG,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAA;IAE9D,IAAI,CAAC,aAAa,CAAC,MAAM,EAAE;QACzB,OAAO,IAAI,CAAA;KACZ;IACD,MAAM,KAAK,GAAG,aAAa,CAAC,CAAC,CAAC,CAAA;IAC9B,MAAM,IAAI,GAAG,aAAa,CAAC,aAAa,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;IACpD,MAAM,OAAO,GACX,CAAC,QAAQ,CAAC,MAAM,CAAC;QACf,GAAG,KAAK;QACR,KAAK,EAAE,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK;KAChD,CAAC,IAAI,CAAC,CAAC;QACR,cAAc,GAAG,UAAU,CAAA;IAC7B,MAAM,QAAQ,GACZ,CAAC,QAAQ,CAAC,MAAM,CAAC;QACf,GAAG,IAAI;QACP,KAAK,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG;KAC7C,CAAC,IAAI,CAAC,CAAC;QACR,cAAc,GAAG,UAAU,CAAA;IAE7B,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAA;IACtC,MAAM,KAAK,GACT,OAAO;QACP,0BAA0B;QAC1B,CAAC,aAAa,CAAC,MAAM,GAAG,uBAAuB,CAAC,GAAG,CAAC,CAAA;IAEtD,MAAM,MAAM,GAAG;QACb,CAAC,OAAO,EAAE,qBAAiB,CAAC;QAC5B,CAAC,KAAK,EAAE,qBAAiB,CAAC;QAC1B,CAAC,QAAQ,EAAE,CAAC,CAAC;QACb,CAAC,OAAO,EAAE,CAAC,CAAC;KACb,CAAA;IAED,OAAO,CACL,2CACE,MAAM,EAAE,MAAM,CAAC,QAAQ,EAAE,EACzB,IAAI,EAAE,IAAA,gBAAK,EAAC,YAAY,EAAE,GAAG,CAAC,EAC9B,MAAM,EAAE,IAAA,gBAAK,EAAC,YAAY,EAAE,GAAG,CAAC,GAChC,CACH,CAAA;AACH,CAAC,CAAC,CAAA;AAiNO,0BAAO;AA7MhB,MAAM,WAAW,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACrC,KAAK,EACL,KAAK,EACL,KAAK,EACL,QAAQ,GAMT;IACC,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IACxB,MAAM,EAAE,cAAc,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAC/C,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,QAAQ,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;IAC7D,MAAM,EAAE,UAAU,EAAE,GAAG,IAAA,sBAAe,EAAC,KAAK,EAAE,GAAG,EAAE,EAAE,CAAC,CAAA;IACtD,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAC7C,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,MAAM,YAAY,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,eAAe,CAAC,OAAO,CAAC,CAAA;IAEvD,MAAM,UAAU,GAAG,EAAE,CAAA;IACrB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,GAAG,GAAG,KAAK,CAAC,GAAG,UAAU,CAAC,EAAE,CAAC,EAAE,EAAE;QAC/D,MAAM,WAAW,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,UAAU,CAAA;QACxC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,WAAW,CAAC,CAAC,CAAC,KAAK,GAAG,WAAW,CAAC,CAAA;KACpE;IAED,MAAM,mBAAmB,GACvB,aAAa,IAAI,IAAA,mBAAY,EAAC,QAAQ,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,MAAM,CAAA;IAE/D,OAAO,CACL;QAEE,8BAAC,qBAAU,IACT,KAAK,EAAE;gBACL,IAAI,EAAE,KAAK,CAAC,QAAQ,GAAG,CAAC;gBACxB,KAAK,EAAE,mBAAmB;oBACxB,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,YAAY;oBACpC,CAAC,CAAC,YAAY;aACjB,EACD,SAAS,EAAE,OAAO,CAAC,eAAe,IAEjC,OAAO,CACG;QACb,uCACE,SAAS,EAAE,EAAE,CACX,OAAO,CAAC,cAAc,EACtB,mBAAmB;gBACjB,CAAC,CAAC,SAAS;gBACX,CAAC,CAAC,QAAQ;oBACV,CAAC,CAAC,OAAO,CAAC,qBAAqB;oBAC/B,CAAC,CAAC,OAAO,CAAC,qBAAqB,EACjC,CAAC,mBAAmB,CAAC,CAAC,CAAC,OAAO,CAAC,cAAc,CAAC,CAAC,CAAC,SAAS,CAC1D,EACD,KAAK,EAAE;gBACL,IAAI,EAAE,KAAK,CAAC,QAAQ,GAAG,cAAc;gBACrC,KAAK,EAAE,KAAK,CAAC,OAAO;gBACpB,WAAW,EAAE,YAAY;aAC1B;YAEA,CAAC,mBAAmB;gBACnB,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,SAAS,EAAE,QAAQ,EAAE,EAAE,CAAC,CACtC,8BAAC,qBAAU,IACT,GAAG,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,IAAI,SAAS,IAAI,QAAQ,EAAE,EACxD,SAAS,EAAE,OAAO,CAAC,aAAa,EAChC,OAAO,EAAC,OAAO,EACf,KAAK,EAAE;wBACL,IAAI,EAAE,CAAC,CAAC,QAAQ,GAAG,CAAC,CAAC,GAAG,UAAU,CAAC,GAAG,KAAK;wBAC3C,aAAa,EAAE,MAAM;wBACrB,KAAK,EAAE,YAAY;qBACpB,IAEA,IAAA,wBAAiB,EAAC,SAAS,EAAE,QAAQ,CAAC,OAAO,CAAC,CACpC,CACd,CAAC;gBACJ,CAAC,C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@@ -6,7 +6,7 @@ export interface Option {
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6
6
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group?: string;
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7
7
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result: BaseResult;
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8
8
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}
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9
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-
declare function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp, minWidth, TextFieldProps, }: {
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9
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+
declare function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp, minWidth, maxWidth, TextFieldProps, }: {
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10
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model: LinearGenomeViewModel;
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onSelect?: (region: BaseResult) => void;
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onChange?: (val: string) => void;
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@@ -15,6 +15,7 @@ declare function RefNameAutocomplete({ model, onSelect, assemblyName, style, fet
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fetchResults: (query: string) => Promise<BaseResult[]>;
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style?: React.CSSProperties;
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minWidth?: number;
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+
maxWidth?: number;
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showHelp?: boolean;
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TextFieldProps?: TFP;
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}): JSX.Element;
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@@ -36,6 +36,32 @@ const Search_1 = __importDefault(require("@mui/icons-material/Search"));
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const Help_1 = __importDefault(require("@mui/icons-material/Help"));
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// lazy
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const HelpDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./HelpDialog'))));
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+
function aggregateResults(results) {
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+
const m = {};
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+
for (let i = 0; i < results.length; i++) {
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const r = results[i];
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const d = r.getDisplayString();
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if (!m[d]) {
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m[d] = [];
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}
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+
m[d].push(r);
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}
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return m;
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}
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function getDeduplicatedResult(results) {
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+
return Object.entries(aggregateResults(results)).map(([displayString, results]) => results.length === 1
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+
? {
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result: results[0],
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}
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: {
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// deduplicate a "multi-result"
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result: new BaseResults_1.default({
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displayString,
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results,
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label: displayString,
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}),
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});
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+
}
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// the logic of this method is to only apply a filter to RefSequenceResults
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40
66
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// because they do not have a matchedObject. the trix search results already
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// filter so don't need re-filtering
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@@ -46,7 +72,7 @@ function filterOptions(options, searchQuery) {
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result.matchedObject);
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47
73
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});
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48
74
|
}
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49
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-
function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp = true, minWidth = 200, TextFieldProps = {}, }) {
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75
|
+
function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp = true, minWidth = 200, maxWidth = 550, TextFieldProps = {}, }) {
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50
76
|
const session = (0, util_1.getSession)(model);
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51
77
|
const { assemblyManager } = session;
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52
78
|
const [open, setOpen] = (0, react_1.useState)(false);
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@@ -77,31 +103,8 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
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77
103
|
setLoaded(false);
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78
104
|
const results = await fetchResults(debouncedSearch);
|
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79
105
|
if (active) {
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80
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-
const m = {};
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81
|
-
for (let i = 0; i < results.length; i++) {
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82
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-
const r = results[i];
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83
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-
const d = r.getDisplayString();
|
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84
|
-
if (!m[d]) {
|
|
85
|
-
m[d] = [];
|
|
86
|
-
}
|
|
87
|
-
m[d].push(r);
|
|
88
|
-
}
|
|
89
|
-
const display = Object.entries(m).map(([displayString, results]) => {
|
|
90
|
-
if (results.length === 1) {
|
|
91
|
-
return { result: results[0] };
|
|
92
|
-
}
|
|
93
|
-
else {
|
|
94
|
-
return {
|
|
95
|
-
result: new BaseResults_1.default({
|
|
96
|
-
displayString,
|
|
97
|
-
results,
|
|
98
|
-
label: displayString,
|
|
99
|
-
}),
|
|
100
|
-
};
|
|
101
|
-
}
|
|
102
|
-
});
|
|
103
|
-
setSearchOptions(display);
|
|
104
106
|
setLoaded(true);
|
|
107
|
+
setSearchOptions(getDeduplicatedResult(results));
|
|
105
108
|
}
|
|
106
109
|
}
|
|
107
110
|
catch (e) {
|
|
@@ -116,13 +119,14 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
|
|
|
116
119
|
};
|
|
117
120
|
}, [assemblyName, fetchResults, debouncedSearch, session, model]);
|
|
118
121
|
const inputBoxVal = coarseVisibleLocStrings || value || '';
|
|
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|
-
// heuristic, text width + icon width
|
|
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|
-
//
|
|
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|
-
const
|
|
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|
+
// heuristic, text width + icon width + 50 accommodates help icon and search
|
|
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|
+
// icon
|
|
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|
+
const w = (0, util_1.measureText)(inputBoxVal, 16) + 50;
|
|
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|
+
const width = Math.min(Math.max(w, minWidth), maxWidth);
|
|
122
126
|
// notes on implementation:
|
|
123
127
|
// The selectOnFocus setting helps highlight the field when clicked
|
|
124
128
|
return (react_1.default.createElement(react_1.default.Fragment, null,
|
|
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|
-
react_1.default.createElement(material_1.Autocomplete, {
|
|
129
|
+
react_1.default.createElement(material_1.Autocomplete, { "data-testid": "autocomplete", disableListWrap: true, disableClearable: true, disabled: !assemblyName, freeSolo: true, includeInputInList: true, selectOnFocus: true, style: { ...style, width }, value: inputBoxVal, loading: !loaded, inputValue: inputValue, onInputChange: (_event, newInputValue) => {
|
|
126
130
|
setInputValue(newInputValue);
|
|
127
131
|
onChange === null || onChange === void 0 ? void 0 : onChange(newInputValue);
|
|
128
132
|
}, loadingText: "loading results", open: open, onOpen: () => setOpen(true), onClose: () => {
|
|
@@ -168,10 +172,10 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
|
|
|
168
172
|
...params.InputProps,
|
|
169
173
|
...InputProps,
|
|
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174
|
endAdornment: (react_1.default.createElement(react_1.default.Fragment, null,
|
|
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|
-
|
|
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|
+
react_1.default.createElement(material_1.InputAdornment, { position: "end", style: { marginRight: 7 } },
|
|
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176
|
react_1.default.createElement(Search_1.default, { fontSize: "small" }),
|
|
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177
|
showHelp ? (react_1.default.createElement(material_1.IconButton, { onClick: () => setHelpDialogDisplayed(true), size: "small" },
|
|
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|
-
react_1.default.createElement(Help_1.default, { fontSize: "small" }))) : null)
|
|
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|
+
react_1.default.createElement(Help_1.default, { fontSize: "small" }))) : null),
|
|
175
179
|
params.InputProps.endAdornment)),
|
|
176
180
|
}, placeholder: "Search for location", onChange: e => setCurrentSearch(e.target.value) }));
|
|
177
181
|
}, getOptionLabel: option => (typeof option === 'string'
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"RefNameAutocomplete.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RefNameAutocomplete.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAA2E;AAC3E,2CAAqC;AACrC,6CAAyE;AACzE,oFAE6C;AAC7C,
|
|
1
|
+
{"version":3,"file":"RefNameAutocomplete.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RefNameAutocomplete.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAA2E;AAC3E,2CAAqC;AACrC,6CAAyE;AACzE,oFAE6C;AAC7C,4CAMsB;AAEtB,QAAQ;AACR,wEAAmD;AACnD,oEAA+C;AAK/C,OAAO;AACP,MAAM,UAAU,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,cAAc,GAAC,CAAC,CAAA;AAOrD,SAAS,gBAAgB,CAAC,OAAqB;IAC7C,MAAM,CAAC,GAAoC,EAAE,CAAA;IAE7C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QACvC,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAA;QACpB,MAAM,CAAC,GAAG,CAAC,CAAC,gBAAgB,EAAE,CAAA;QAC9B,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE;YACT,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAA;SACV;QACD,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;KACb;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED,SAAS,qBAAqB,CAAC,OAAqB;IAClD,OAAO,MAAM,CAAC,OAAO,CAAC,gBAAgB,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAClD,CAAC,CAAC,aAAa,EAAE,OAAO,CAAC,EAAE,EAAE,CAC3B,OAAO,CAAC,MAAM,KAAK,CAAC;QAClB,CAAC,CAAC;YACE,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC;SACnB;QACH,CAAC,CAAC;YACE,+BAA+B;YAC/B,MAAM,EAAE,IAAI,qBAAU,CAAC;gBACrB,aAAa;gBACb,OAAO;gBACP,KAAK,EAAE,aAAa;aACrB,CAAC;SACH,CACR,CAAA;AACH,CAAC;AAED,2EAA2E;AAC3E,4EAA4E;AAC5E,oCAAoC;AACpC,SAAS,aAAa,CAAC,OAAiB,EAAE,WAAmB;IAC3D,OAAO,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE;QAC7B,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,CAAA;QACzB,OAAO,CACL,MAAM,CAAC,QAAQ,EAAE,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;YACrD,MAAM,CAAC,aAAa,CACrB,CAAA;IACH,CAAC,CAAC,CAAA;AACJ,CAAC;AAED,SAAS,mBAAmB,CAAC,EAC3B,KAAK,EACL,QAAQ,EACR,YAAY,EACZ,KAAK,EACL,YAAY,EACZ,QAAQ,EACR,KAAK,EACL,QAAQ,GAAG,IAAI,EACf,QAAQ,GAAG,GAAG,EACd,QAAQ,GAAG,GAAG,EACd,cAAc,GAAG,EAAE,GAapB;IACC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACnC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,IAAA,gBAAQ,EAAC,IAAI,CAAC,CAAA;IAC1C,MAAM,CAAC,qBAAqB,EAAE,sBAAsB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACvE,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACtD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IAChD,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,GAAY,CAAA;IAC9D,MAAM,eAAe,GAAG,IAAA,kBAAW,EAAC,aAAa,EAAE,GAAG,CAAC,CAAA;IACvD,MAAM,QAAQ,GAAG,YAAY,CAAC,CAAC,CAAC,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;IAC7E,MAAM,EAAE,uBAAuB,EAAE,mBAAmB,EAAE,GAAG,KAAK,CAAA;IAE9D,uDAAuD;IACvD,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,OAAO,KAAI,EAAE,CAAA;IAEvC,MAAM,OAAO,GAAG,IAAA,eAAO,EACrB,GAAG,EAAE,CACH,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;QACrB,MAAM,EAAE,IAAI,+BAAiB,CAAC;YAC5B,OAAO,EAAE,MAAM,CAAC,OAAO;YACvB,KAAK,EAAE,MAAM,CAAC,OAAO;YACrB,gBAAgB,EAAE,SAAS;SAC5B,CAAC;KACH,CAAC,CAAC,EACL,CAAC,OAAO,CAAC,CACV,CAAA;IAED,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,MAAM,GAAG,IAAI,CAGhB;QAAA,CAAC,KAAK,IAAI,EAAE;YACX,IAAI;gBACF,IAAI,eAAe,KAAK,EAAE,IAAI,CAAC,YAAY,EAAE;oBAC3C,OAAM;iBACP;gBAED,SAAS,CAAC,KAAK,CAAC,CAAA;gBAChB,MAAM,OAAO,GAAG,MAAM,YAAY,CAAC,eAAe,CAAC,CAAA;gBACnD,IAAI,MAAM,EAAE;oBACV,SAAS,CAAC,IAAI,CAAC,CAAA;oBACf,gBAAgB,CAAC,qBAAqB,CAAC,OAAO,CAAC,CAAC,CAAA;iBACjD;aACF;YAAC,OAAO,CAAC,EAAE;gBACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,IAAI,MAAM,EAAE;oBACV,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,CAAA;iBAChC;aACF;QACH,CAAC,CAAC,EAAE,CAAA;QAEJ,OAAO,GAAG,EAAE;YACV,MAAM,GAAG,KAAK,CAAA;QAChB,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,YAAY,EAAE,YAAY,EAAE,eAAe,EAAE,OAAO,EAAE,KAAK,CAAC,CAAC,CAAA;IAEjE,MAAM,WAAW,GAAG,uBAAuB,IAAI,KAAK,IAAI,EAAE,CAAA;IAE1D,4EAA4E;IAC5E,OAAO;IACP,MAAM,CAAC,GAAG,IAAA,kBAAW,EAAC,WAAW,EAAE,EAAE,CAAC,GAAG,EAAE,CAAA;IAC3C,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,QAAQ,CAAC,EAAE,QAAQ,CAAC,CAAA;IAEvD,2BAA2B;IAC3B,mEAAmE;IACnE,OAAO,CACL;QACE,8BAAC,uBAAY,mBACC,cAAc,EAC1B,eAAe,QACf,gBAAgB,QAChB,QAAQ,EAAE,CAAC,YAAY,EACvB,QAAQ,QACR,kBAAkB,QAClB,aAAa,QACb,KAAK,EAAE,EAAE,GAAG,KAAK,EAAE,KAAK,EAAE,EAC1B,KAAK,EAAE,WAAW,EAClB,OAAO,EAAE,CAAC,MAAM,EAChB,UAAU,EAAE,UAAU,EACtB,aAAa,EAAE,CAAC,MAAM,EAAE,aAAa,EAAE,EAAE;gBACvC,aAAa,CAAC,aAAa,CAAC,CAAA;gBAC5B,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAG,aAAa,CAAC,CAAA;YAC3B,CAAC,EACD,WAAW,EAAC,iBAAiB,EAC7B,IAAI,EAAE,IAAI,EACV,MAAM,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,EAC3B,OAAO,EAAE,GAAG,EAAE;gBACZ,OAAO,CAAC,KAAK,CAAC,CAAA;gBACd,SAAS,CAAC,IAAI,CAAC,CAAA;gBACf,IAAI,mBAAmB,EAAE;oBACvB,gBAAgB,CAAC,EAAE,CAAC,CAAA;oBACpB,gBAAgB,CAAC,SAAS,CAAC,CAAA;iBAC5B;YACH,CAAC,EACD,QAAQ,EAAE,CAAC,MAAM,EAAE,cAAc,EAAE,EAAE;gBACnC,IAAI,CAAC,cAAc,IAAI,CAAC,YAAY,EAAE;oBACpC,OAAM;iBACP;gBAED,IAAI,OAAO,cAAc,KAAK,QAAQ,EAAE;oBACtC,0CAA0C;oBAC1C,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAG,IAAI,qBAAU,CAAC,EAAE,KAAK,EAAE,cAAc,EAAE,CAAC,CAAC,CAAA;iBACtD;qBAAM;oBACL,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAG,cAAc,CAAC,MAAM,CAAC,CAAA;iBAClC;gBACD,aAAa,CAAC,WAAW,CAAC,CAAA;YAC5B,CAAC,EACD,OAAO,EAAE,CAAC,CAAA,aAAa,aAAb,aAAa,uBAAb,aAAa,CAAE,MAAM,CAAA,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,aAAa,EACzD,iBAAiB,EAAE,MAAM,CAAC,EAAE,CAAC,CAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,KAAK,MAAK,aAAa,EAC5D,aAAa,EAAE,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;gBACjC,MAAM,QAAQ,GAAG,aAAa,CAC5B,OAAO,EACP,MAAM,CAAC,UAAU,CAAC,iBAAiB,EAAE,CACtC,CAAA;gBACD,OAAO;oBACL,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC;oBACzB,GAAG,CAAC,QAAQ,CAAC,MAAM,GAAG,GAAG;wBACvB,CAAC,CAAC;4BACE;gCACE,KAAK,EAAE,aAAa;gCACpB,MAAM,EAAE,IAAI,qBAAU,CAAC;oCACrB,KAAK,EAAE,8BAA8B;iCACtC,CAAC;6BACH;yBACF;wBACH,CAAC,CAAC,EAAE,CAAC;iBACR,CAAA;YACH,CAAC,EACD,WAAW,EAAE,MAAM,CAAC,EAAE;gBACpB,MAAM,EAAE,UAAU,EAAE,UAAU,GAAG,EAAE,EAAE,GAAG,cAAc,CAAA;gBACtD,OAAO,CACL,8BAAC,oBAAS,IACR,MAAM,EAAE,GAAG,EAAE;oBACX,gEAAgE;oBAChE,yBAAyB;oBACzB,aAAa,CAAC,WAAW,CAAC,KAExB,MAAM,KACN,cAAc,EAClB,UAAU,EAAE,UAAU,EACtB,UAAU,EAAE;wBACV,GAAG,MAAM,CAAC,UAAU;wBACpB,GAAG,UAAU;wBAEb,YAAY,EAAE,CACZ;4BACE,8BAAC,yBAAc,IAAC,QAAQ,EAAC,KAAK,EAAC,KAAK,EAAE,EAAE,WAAW,EAAE,CAAC,EAAE;gCACtD,8BAAC,gBAAU,IAAC,QAAQ,EAAC,OAAO,GAAG;gCAC9B,QAAQ,CAAC,CAAC,CAAC,CACV,8BAAC,qBAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,sBAAsB,CAAC,IAAI,CAAC,EAC3C,IAAI,EAAC,OAAO;oCAEZ,8BAAC,cAAQ,IAAC,QAAQ,EAAC,OAAO,GAAG,CAClB,CACd,CAAC,CAAC,CAAC,IAAI,CACO;4BAChB,MAAM,CAAC,UAAU,CAAC,YAAY,CAC9B,CACJ;qBACF,EACD,WAAW,EAAC,qBAAqB,EACjC,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC,gBAAgB,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,GAC/C,CACH,CAAA;YACH,CAAC,EACD,cAAc,EAAE,MAAM,CAAC,EAAE,CACvB,CAAC,OAAO,MAAM,KAAK,QAAQ;gBACzB,CAAC,CAAC,MAAM;gBACR,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,gBAAgB,EAAE,CAAC,IAAI,EAAE,GAE7C;QACD,qBAAqB,CAAC,CAAC,CAAC,CACvB,8BAAC,gBAAQ,IAAC,QAAQ,EAAE,0CAAO;YACzB,8BAAC,UAAU,IAAC,WAAW,EAAE,GAAG,EAAE,CAAC,sBAAsB,CAAC,KAAK,CAAC,GAAI,CACvD,CACZ,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,mBAAmB,CAAC,CAAA"}
|
|
@@ -4,11 +4,11 @@ interface Offset {
|
|
|
4
4
|
refName?: string;
|
|
5
5
|
oob?: boolean;
|
|
6
6
|
}
|
|
7
|
-
|
|
7
|
+
export default function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, }: {
|
|
8
8
|
leftBpOffset: Offset;
|
|
9
9
|
rightBpOffset: Offset;
|
|
10
10
|
numOfBpSelected?: number;
|
|
11
11
|
left: number;
|
|
12
12
|
width: number;
|
|
13
13
|
}): JSX.Element;
|
|
14
|
-
export
|
|
14
|
+
export {};
|
|
@@ -30,8 +30,8 @@ const util_1 = require("@jbrowse/core/util");
|
|
|
30
30
|
const useStyles = (0, mui_1.makeStyles)()(theme => {
|
|
31
31
|
const { primary, tertiary } = theme.palette;
|
|
32
32
|
const background = tertiary
|
|
33
|
-
? (0, material_1.alpha)(tertiary.
|
|
34
|
-
: (0, material_1.alpha)(primary.
|
|
33
|
+
? (0, material_1.alpha)(tertiary.light, 0.7)
|
|
34
|
+
: (0, material_1.alpha)(primary.light, 0.7);
|
|
35
35
|
return {
|
|
36
36
|
rubberband: {
|
|
37
37
|
height: '100%',
|
|
@@ -64,23 +64,9 @@ function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, wi
|
|
|
64
64
|
const { classes } = useStyles();
|
|
65
65
|
return (react_1.default.createElement(react_1.default.Fragment, null,
|
|
66
66
|
ref.current ? (react_1.default.createElement(react_1.default.Fragment, null,
|
|
67
|
-
react_1.default.createElement(material_1.Popover, { className: classes.popover, classes: { paper: classes.paper }, open: true, anchorEl: ref.current, anchorOrigin: {
|
|
68
|
-
vertical: 'top',
|
|
69
|
-
horizontal: 'left',
|
|
70
|
-
}, transformOrigin: {
|
|
71
|
-
vertical: 'bottom',
|
|
72
|
-
horizontal: 'right',
|
|
73
|
-
}, keepMounted: true, disableRestoreFocus: true },
|
|
67
|
+
react_1.default.createElement(material_1.Popover, { className: classes.popover, classes: { paper: classes.paper }, open: true, anchorEl: ref.current, anchorOrigin: { vertical: 'top', horizontal: 'left' }, transformOrigin: { vertical: 'bottom', horizontal: 'right' }, keepMounted: true, disableRestoreFocus: true },
|
|
74
68
|
react_1.default.createElement(material_1.Typography, null, (0, util_1.stringify)(leftBpOffset))),
|
|
75
|
-
react_1.default.createElement(material_1.Popover, { className: classes.popover, classes: {
|
|
76
|
-
paper: classes.paper,
|
|
77
|
-
}, open: true, anchorEl: ref.current, anchorOrigin: {
|
|
78
|
-
vertical: 'top',
|
|
79
|
-
horizontal: 'right',
|
|
80
|
-
}, transformOrigin: {
|
|
81
|
-
vertical: 'bottom',
|
|
82
|
-
horizontal: 'left',
|
|
83
|
-
}, keepMounted: true, disableRestoreFocus: true },
|
|
69
|
+
react_1.default.createElement(material_1.Popover, { className: classes.popover, classes: { paper: classes.paper }, open: true, anchorEl: ref.current, anchorOrigin: { vertical: 'top', horizontal: 'right' }, transformOrigin: { vertical: 'bottom', horizontal: 'left' }, keepMounted: true, disableRestoreFocus: true },
|
|
84
70
|
react_1.default.createElement(material_1.Typography, null, (0, util_1.stringify)(rightBpOffset))))) : null,
|
|
85
71
|
react_1.default.createElement("div", { ref: ref, className: classes.rubberband, style: { left, width } }, numOfBpSelected ? (react_1.default.createElement(material_1.Typography, { variant: "h6", className: classes.rubberbandText },
|
|
86
72
|
(0, util_1.toLocale)(numOfBpSelected),
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"RubberbandSpan.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RubberbandSpan.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAqC;AACrC,uCAA0C;
|
|
1
|
+
{"version":3,"file":"RubberbandSpan.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RubberbandSpan.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAqC;AACrC,uCAA0C;AAC1C,4CAA0D;AAC1D,6CAAwD;AAExD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;IAC3C,MAAM,UAAU,GAAG,QAAQ;QACzB,CAAC,CAAC,IAAA,gBAAK,EAAC,QAAQ,CAAC,KAAK,EAAE,GAAG,CAAC;QAC5B,CAAC,CAAC,IAAA,gBAAK,EAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,CAAA;IAC7B,OAAO;QACL,UAAU,EAAE;YACV,MAAM,EAAE,MAAM;YACd,UAAU;YACV,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,EAAE;YACV,SAAS,EAAE,QAAQ;YACnB,QAAQ,EAAE,QAAQ;SACnB;QACD,iBAAiB,EAAE;YACjB,MAAM,EAAE,WAAW;YACnB,KAAK,EAAE,MAAM;YACb,SAAS,EAAE,CAAC;SACb;QACD,cAAc,EAAE;YACd,KAAK,EAAE,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,YAAY;SAC/D;QACD,OAAO,EAAE;YACP,WAAW,EAAE,MAAM;YACnB,MAAM,EAAE,WAAW;SACpB;QACD,KAAK,EAAE;YACL,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;YAC7B,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC/B;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAQF,SAAwB,cAAc,CAAC,EACrC,YAAY,EACZ,aAAa,EACb,eAAe,EACf,IAAI,EACJ,KAAK,GAON;IACC,MAAM,GAAG,GAAG,IAAA,cAAM,EAAC,IAAI,CAAC,CAAA;IACxB,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL;QACG,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CACb;YACE,8BAAC,kBAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,OAAO,EAAE,EAAE,KAAK,EAAE,OAAO,CAAC,KAAK,EAAE,EACjC,IAAI,QACJ,QAAQ,EAAE,GAAG,CAAC,OAAO,EACrB,YAAY,EAAE,EAAE,QAAQ,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE,EACrD,eAAe,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,EAC5D,WAAW,QACX,mBAAmB;gBAEnB,8BAAC,qBAAU,QAAE,IAAA,gBAAS,EAAC,YAAY,CAAC,CAAc,CAC1C;YACV,8BAAC,kBAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,OAAO,EAAE,EAAE,KAAK,EAAE,OAAO,CAAC,KAAK,EAAE,EACjC,IAAI,QACJ,QAAQ,EAAE,GAAG,CAAC,OAAO,EACrB,YAAY,EAAE,EAAE,QAAQ,EAAE,KAAK,EAAE,UAAU,EAAE,OAAO,EAAE,EACtD,eAAe,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,EAAE,EAC3D,WAAW,QACX,mBAAmB;gBAEnB,8BAAC,qBAAU,QAAE,IAAA,gBAAS,EAAC,aAAa,CAAC,CAAc,CAC3C,CACT,CACJ,CAAC,CAAC,CAAC,IAAI;QACR,uCAAK,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,OAAO,CAAC,UAAU,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,IACjE,eAAe,CAAC,CAAC,CAAC,CACjB,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI,EAAC,SAAS,EAAE,OAAO,CAAC,cAAc;YACvD,IAAA,eAAQ,EAAC,eAAe,CAAC;kBACf,CACd,CAAC,CAAC,CAAC,IAAI,CACJ,CACL,CACJ,CAAA;AACH,CAAC;AAtDD,iCAsDC"}
|
|
@@ -55,7 +55,7 @@ function SearchBox({ model, showHelp, }) {
|
|
|
55
55
|
const [ref, rest] = (0, util_2.splitLast)(input, ':');
|
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56
|
const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
|
|
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57
|
if (allRefs.includes(input) ||
|
|
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|
-
(allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
|
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|
+
(allRefs.includes(ref) && !Number.isNaN(Number.parseInt(rest, 10)))) {
|
|
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|
await model.navToLocString(input, assemblyName);
|
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|
}
|
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|
else {
|
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@@ -90,10 +90,10 @@ function SearchBox({ model, showHelp, }) {
|
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|
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|
rankSearchResults,
|
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|
textSearchManager,
|
|
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|
assembly,
|
|
93
|
-
}), model: model, TextFieldProps: {
|
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93
|
+
}), model: model, minWidth: 175, TextFieldProps: {
|
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|
variant: 'outlined',
|
|
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|
className: classes.headerRefName,
|
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|
-
style: { margin: __1.SPACING
|
|
96
|
+
style: { margin: __1.SPACING },
|
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|
InputProps: {
|
|
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|
style: {
|
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|
padding: 0,
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"SearchBox.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchBox.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAA+C;AAC/C,uCAA0C;AAC1C,6CAA+C;AAG/C,SAAS;AACT,gFAAuD;AACvD,iCAAgD;AAChD,0BAAkE;AAElE,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,aAAa,EAAE;QACb,QAAQ,EAAE,GAAG;KACd;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,SAAS,CAAC,EACjB,KAAK,EACL,QAAQ,GAIT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IACxB,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAEjC,MAAM,EAAE,iBAAiB,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACtD,MAAM,EAAE,aAAa,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAClD,MAAM,YAAY,GAAG,aAAa,CAAC,CAAC,CAAC,CAAA;IACrC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,YAAY,CAAC,CAAA;IAEnD,KAAK,UAAU,WAAW,CAAC,MAAkB;QAC3C,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;QACrC,MAAM,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;QACnC,IAAI,QAAQ,EAAE;YACZ,MAAM,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;YAClD,IAAI,OAAO,EAAE;gBACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;aACzB;SACF;IACH,CAAC;IAED,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,KAAK,UAAU,oBAAoB,CAAC,MAAkB;;QACpD,IAAI;YACF,IAAI,MAAM,CAAC,WAAW,EAAE,EAAE;gBACxB,MAAM,WAAW,CAAC,MAAM,CAAC,CAAA;aAC1B;iBAAM,IAAI,MAAA,MAAM,CAAC,OAAO,0CAAE,MAAM,EAAE;gBACjC,KAAK,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAA;aAC1D;iBAAM;gBACL,MAAM,KAAK,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAA;gBAC/B,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,IAAA,gBAAS,EAAC,KAAK,EAAE,GAAG,CAAC,CAAA;gBACzC,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,wBAAwB,KAAI,EAAE,CAAA;gBACxD,IACE,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC;oBACvB,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,
|
|
1
|
+
{"version":3,"file":"SearchBox.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchBox.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAA+C;AAC/C,uCAA0C;AAC1C,6CAA+C;AAG/C,SAAS;AACT,gFAAuD;AACvD,iCAAgD;AAChD,0BAAkE;AAElE,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,aAAa,EAAE;QACb,QAAQ,EAAE,GAAG;KACd;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,SAAS,CAAC,EACjB,KAAK,EACL,QAAQ,GAIT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IACxB,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAEjC,MAAM,EAAE,iBAAiB,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACtD,MAAM,EAAE,aAAa,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAClD,MAAM,YAAY,GAAG,aAAa,CAAC,CAAC,CAAC,CAAA;IACrC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,YAAY,CAAC,CAAA;IAEnD,KAAK,UAAU,WAAW,CAAC,MAAkB;QAC3C,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;QACrC,MAAM,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;QACnC,IAAI,QAAQ,EAAE;YACZ,MAAM,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;YAClD,IAAI,OAAO,EAAE;gBACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;aACzB;SACF;IACH,CAAC;IAED,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,KAAK,UAAU,oBAAoB,CAAC,MAAkB;;QACpD,IAAI;YACF,IAAI,MAAM,CAAC,WAAW,EAAE,EAAE;gBACxB,MAAM,WAAW,CAAC,MAAM,CAAC,CAAA;aAC1B;iBAAM,IAAI,MAAA,MAAM,CAAC,OAAO,0CAAE,MAAM,EAAE;gBACjC,KAAK,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAA;aAC1D;iBAAM;gBACL,MAAM,KAAK,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAA;gBAC/B,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,IAAA,gBAAS,EAAC,KAAK,EAAE,GAAG,CAAC,CAAA;gBACzC,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,wBAAwB,KAAI,EAAE,CAAA;gBACxD,IACE,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC;oBACvB,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,EACnE;oBACA,MAAM,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,YAAY,CAAC,CAAA;iBAChD;qBAAM;oBACL,MAAM,OAAO,GAAG,MAAM,IAAA,mBAAY,EAAC;wBACjC,WAAW,EAAE,KAAK;wBAClB,UAAU,EAAE,OAAO;wBACnB,WAAW;wBACX,iBAAiB;wBACjB,iBAAiB;wBACjB,QAAQ;qBACT,CAAC,CAAA;oBAEF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE;wBACtB,KAAK,CAAC,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,WAAW,EAAE,CAAC,CAAA;qBACrD;yBAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;wBAC/B,MAAM,WAAW,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;qBAC9B;yBAAM;wBACL,MAAM,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,YAAY,CAAC,CAAA;qBAChD;iBACF;aACF;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IACD,OAAO,CACL,8BAAC,6BAAmB,IAClB,QAAQ,EAAE,QAAQ,EAClB,QAAQ,EAAE,oBAAoB,EAC9B,YAAY,EAAE,YAAY,EAC1B,YAAY,EAAE,WAAW,CAAC,EAAE,CAC1B,IAAA,mBAAY,EAAC;YACX,WAAW;YACX,WAAW;YACX,iBAAiB;YACjB,iBAAiB;YACjB,QAAQ;SACT,CAAC,EAEJ,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,GAAG,EACb,cAAc,EAAE;YACd,OAAO,EAAE,UAAU;YACnB,SAAS,EAAE,OAAO,CAAC,aAAa;YAChC,KAAK,EAAE,EAAE,MAAM,EAAE,WAAO,EAAE;YAC1B,UAAU,EAAE;gBACV,KAAK,EAAE;oBACL,OAAO,EAAE,CAAC;oBACV,MAAM,EAAE,iBAAa;oBACrB,UAAU,EAAE,IAAA,gBAAK,EAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;iBACvD;aACF;SACF,GACD,CACH,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,SAAS,CAAC,CAAA"}
|
|
@@ -8,9 +8,10 @@ const material_1 = require("@mui/material");
|
|
|
8
8
|
const mui_1 = require("tss-react/mui");
|
|
9
9
|
const mobx_react_1 = require("mobx-react");
|
|
10
10
|
const configuration_1 = require("@jbrowse/core/configuration");
|
|
11
|
-
const CascadingMenu_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenu"));
|
|
12
11
|
const util_1 = require("@jbrowse/core/util");
|
|
13
12
|
const tracks_1 = require("@jbrowse/core/util/tracks");
|
|
13
|
+
const ui_1 = require("@jbrowse/core/ui");
|
|
14
|
+
const CascadingMenu_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenu"));
|
|
14
15
|
const hooks_1 = require("material-ui-popup-state/hooks");
|
|
15
16
|
// icons
|
|
16
17
|
const MoreVert_1 = __importDefault(require("@mui/icons-material/MoreVert"));
|
|
@@ -18,7 +19,6 @@ const DragIndicator_1 = __importDefault(require("@mui/icons-material/DragIndicat
|
|
|
18
19
|
const Close_1 = __importDefault(require("@mui/icons-material/Close"));
|
|
19
20
|
const Minimize_1 = __importDefault(require("@mui/icons-material/Minimize"));
|
|
20
21
|
const Add_1 = __importDefault(require("@mui/icons-material/Add"));
|
|
21
|
-
const ui_1 = require("@jbrowse/core/ui");
|
|
22
22
|
const useStyles = (0, mui_1.makeStyles)()(theme => ({
|
|
23
23
|
root: {
|
|
24
24
|
background: (0, material_1.alpha)(theme.palette.background.paper, 0.8),
|
|
@@ -37,7 +37,6 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
|
|
|
37
37
|
},
|
|
38
38
|
dragHandle: {
|
|
39
39
|
cursor: 'grab',
|
|
40
|
-
color: '#135560',
|
|
41
40
|
},
|
|
42
41
|
dragHandleIcon: {
|
|
43
42
|
display: 'inline-block',
|
|
@@ -48,7 +47,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
|
|
|
48
47
|
padding: theme.spacing(1),
|
|
49
48
|
},
|
|
50
49
|
}));
|
|
51
|
-
const TrackLabel = react_1.default.forwardRef(({ track, className }, ref)
|
|
50
|
+
const TrackLabel = react_1.default.forwardRef(function ({ track, className }, ref) {
|
|
52
51
|
var _a;
|
|
53
52
|
const { classes, cx } = useStyles();
|
|
54
53
|
const view = (0, util_1.getContainingView)(track);
|
|
@@ -80,11 +79,11 @@ const TrackLabel = react_1.default.forwardRef(({ track, className }, ref) => {
|
|
|
80
79
|
}
|
|
81
80
|
}, onDragEnd: () => view.setDraggingTrackId(undefined), "data-testid": `dragHandle-${view.id}-${trackId}` },
|
|
82
81
|
react_1.default.createElement(DragIndicator_1.default, { className: classes.dragHandleIcon, fontSize: "small" })),
|
|
83
|
-
react_1.default.createElement(material_1.IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track"
|
|
82
|
+
react_1.default.createElement(material_1.IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track" },
|
|
84
83
|
react_1.default.createElement(Close_1.default, { fontSize: "small" })),
|
|
85
84
|
react_1.default.createElement(material_1.Typography, { variant: "body1", component: "span", className: classes.trackName },
|
|
86
|
-
react_1.default.createElement(ui_1.SanitizedHTML, { html: trackName
|
|
87
|
-
react_1.default.createElement(material_1.IconButton, { ...(0, hooks_1.bindTrigger)(popupState), className: classes.iconButton,
|
|
85
|
+
react_1.default.createElement(ui_1.SanitizedHTML, { html: `${trackName}${minimized ? ' (minimized)' : ''}` })),
|
|
86
|
+
react_1.default.createElement(material_1.IconButton, { ...(0, hooks_1.bindTrigger)(popupState), className: classes.iconButton, "data-testid": "track_menu_icon", disabled: items.length === 0 },
|
|
88
87
|
react_1.default.createElement(MoreVert_1.default, { fontSize: "small" })),
|
|
89
88
|
react_1.default.createElement(CascadingMenu_1.default, { ...(0, hooks_1.bindPopover)(popupState), onMenuItemClick: (_, callback) => callback(), menuItems: items, popupState: popupState })));
|
|
90
89
|
});
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAAoE;AACpE,uCAA0C;AAC1C,2CAAqC;AACrC,+DAAqD;AACrD,
|
|
1
|
+
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@@ -1,9 +1,8 @@
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1
1
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import React from 'react';
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2
2
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import { LinearGenomeViewModel } from '..';
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3
3
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type LGV = LinearGenomeViewModel;
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|
4
|
-
declare
|
|
4
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+
declare const _default: ({ children, model, }: {
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5
5
|
children: React.ReactNode;
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|
6
6
|
model: LGV;
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|
7
|
-
})
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|
8
|
-
declare const _default: typeof TracksContainer;
|
|
7
|
+
}) => JSX.Element;
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|
9
8
|
export default _default;
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