@jbrowse/plugin-linear-genome-view 2.2.1 → 2.3.0

package/esm/LinearGenomeView/components/SearchResultsDialog.js

@@ -1,23 +1,10 @@
 import React from 'react';
-import { makeStyles } from 'tss-react/mui';
 import { resolveIdentifier, getRoot } from 'mobx-state-tree';
 import { getSession, getEnv } from '@jbrowse/core/util';
-import { Button, Dialog, DialogActions, DialogContent, DialogTitle, Divider, IconButton, Paper, Table, TableBody, TableCell, TableContainer, TableHead, TableRow, Typography, } from '@mui/material';
-import CloseIcon from '@mui/icons-material/Close';
-const useStyles = makeStyles()(theme => ({
-    dialogContent: {
-        width: '80em',
-    },
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-}));
+import { Dialog } from '@jbrowse/core/ui';
+import { Button, DialogActions, DialogContent, Divider, Paper, Table, TableBody, TableCell, TableContainer, TableHead, TableRow, Typography, } from '@mui/material';
 export default function SearchResultsDialog({ model, optAssemblyName, handleClose, }) {
     var _a, _b;
-    const { classes } = useStyles();
     const session = getSession(model);
     const { pluginManager } = getEnv(session);
     const { assemblyManager } = session;
@@ -36,7 +23,7 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
         throw new Error(`assembly ${assemblyName} regions not loaded`);
     }
     const assemblyRegions = assembly.regions;
-    function handleClick(location) {
+    async function handleClick(location) {
         try {
             const newRegion = assemblyRegions.find(region => location === region.refName);
             if (newRegion) {
@@ -46,7 +33,7 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
                 model.showAllRegions();
             }
             else {
-                model.navToLocString(location, assemblyName);
+                await model.navToLocString(location, assemblyName);
             }
         }
         catch (e) {
@@ -63,14 +50,7 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
         }
         return '';
     }
-    return (React.createElement(Dialog, { open: true, maxWidth: "xl", onClose: handleClose },
-        React.createElement(DialogTitle, null,
-            "Search results",
-            handleClose ? (React.createElement(IconButton, { "data-testid": "close-resultsDialog", className: classes.closeButton, onClick: () => {
-                    handleClose();
-                }, size: "large" },
-                React.createElement(CloseIcon, null))) : null),
-        React.createElement(Divider, null),
+    return (React.createElement(Dialog, { open: true, maxWidth: "xl", onClose: handleClose, title: "Search results" },
         React.createElement(DialogContent, null, !((_b = model.searchResults) === null || _b === void 0 ? void 0 : _b.length) ? (React.createElement(Typography, null,
             "No results found for ",
             React.createElement("b", null, model.searchQuery))) : (React.createElement(React.Fragment, null,
@@ -90,15 +70,21 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
                         React.createElement(TableCell, { align: "right" }, result.getLocation()),
                         React.createElement(TableCell, { align: "right" }, getTrackName(result.getTrackId()) || 'N/A'),
                         React.createElement(TableCell, { align: "right" },
-                            React.createElement(Button, { onClick: () => {
-                                    const location = result.getLocation();
-                                    if (location) {
-                                        handleClick(location);
-                                        const resultTrackId = result.getTrackId();
-                                        if (resultTrackId) {
-                                            model.showTrack(resultTrackId);
+                            React.createElement(Button, { onClick: async () => {
+                                    try {
+                                        const location = result.getLocation();
+                                        if (location) {
+                                            await handleClick(location);
+                                            const resultTrackId = result.getTrackId();
+                                            if (resultTrackId) {
+                                                model.showTrack(resultTrackId);
+                                            }
                                         }
                                     }
+                                    catch (e) {
+                                        console.error(e);
+                                        session.notify(`${e}`, 'error');
+                                    }
                                     handleClose();
                                 }, color: "primary", variant: "contained" }, "Go"))))))))))),
         React.createElement(Divider, null),

package/esm/LinearGenomeView/components/SearchResultsDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"SearchResultsDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchResultsDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,iBAAiB,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAC5D,OAAO,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAA;AACvD,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,OAAO,EACP,KAAK,EACL,KAAK,EACL,SAAS,EACT,SAAS,EACT,cAAc,EACd,SAAS,EACT,QAAQ,EACR,UAAU,GACX,MAAM,eAAe,CAAA;AAItB,MAAM,CAAC,OAAO,UAAU,mBAAmB,CAAC,EAC1C,KAAK,EACL,eAAe,EACf,WAAW,GAKZ;;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,OAAO,CAAC,CAAA;IACzC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACnC,IAAI,YAAY,GAAG,eAAe,CAAA;IAClC,IAAI,KAAK,CAAC,gBAAgB,CAAC,MAAM,GAAG,CAAC,EAAE;QACrC,YAAY,GAAG,MAAA,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC,0CAAE,YAAY,CAAA;KACvD;IACD,IAAI,CAAC,YAAY,EAAE;QACjB,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;KAC3C;IACD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,YAAY,CAAC,CAAA;KACtD;IACD,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE;QACrB,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,qBAAqB,CAAC,CAAA;KAC/D;IACD,MAAM,eAAe,GAAG,QAAQ,CAAC,OAAO,CAAA;IAExC,KAAK,UAAU,WAAW,CAAC,QAAgB;QACzC,IAAI;YACF,MAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CACpC,MAAM,CAAC,EAAE,CAAC,QAAQ,KAAK,MAAM,CAAC,OAAO,CACtC,CAAA;YACD,IAAI,SAAS,EAAE;gBACb,KAAK,CAAC,mBAAmB,CAAC,CAAC,SAAS,CAAC,CAAC,CAAA;gBACtC,qEAAqE;gBACrE,6BAA6B;gBAC7B,KAAK,CAAC,cAAc,EAAE,CAAA;aACvB;iBAAM;gBACL,MAAM,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;aACnD;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACf,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IAED,SAAS,YAAY,CAAC,OAA2B;;QAC/C,IAAI,OAAO,EAAE;YACX,MAAM,MAAM,GAAG,aAAa,CAAC,yBAAyB,CAAC,OAAO,CAAC,CAAA;YAC/D,MAAM,aAAa,GAAG,iBAAiB,CAAC,MAAM,EAAE,OAAO,CAAC,KAAK,CAAC,EAAE,OAAO,CAAC,CAAA;YACxE,OAAO,CAAA,MAAA,aAAa,aAAb,aAAa,uBAAb,aAAa,CAAE,IAAI,0CAAE,KAAK,KAAI,EAAE,CAAA;SACxC;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IAED,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,gBAAgB;QACrE,oBAAC,aAAa,QACX,CAAC,CAAA,MAAA,KAAK,CAAC,aAAa,0CAAE,MAAM,CAAA,CAAC,CAAC,CAAC,CAC9B,oBAAC,UAAU;;YACY,+BAAI,KAAK,CAAC,WAAW,CAAK,CACpC,CACd,CAAC,CAAC,CAAC,CACF;YACE,oBAAC,UAAU;;gBACW,+BAAI,KAAK,CAAC,WAAW,CAAK,CACnC;YACb,oBAAC,cAAc,IAAC,SAAS,EAAE,KAAK;gBAC9B,oBAAC,KAAK;oBACJ,oBAAC,SAAS;wBACR,oBAAC,QAAQ;4BACP,oBAAC,SAAS,eAAiB;4BAC3B,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,eAAqB;4BAC7C,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,YAAkB;4BAC1C,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAClB,CACD;oBACZ,oBAAC,SAAS,QACP,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACjC,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,MAAM,CAAC,KAAK,EAAE,EAAE;wBAChC,oBAAC,SAAS,IAAC,SAAS,EAAC,IAAI,EAAC,KAAK,EAAC,KAAK,IAClC,MAAM,CAAC,QAAQ,EAAE,CACR;wBACZ,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,IACrB,MAAM,CAAC,WAAW,EAAE,CACX;wBACZ,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,IACrB,YAAY,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC,IAAI,KAAK,CACjC;wBACZ,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO;4BACtB,oBAAC,MAAM,IACL,OAAO,EAAE,KAAK,IAAI,EAAE;oCAClB,IAAI;wCACF,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;wCACrC,IAAI,QAAQ,EAAE;4CACZ,MAAM,WAAW,CAAC,QAAQ,CAAC,CAAA;4CAC3B,MAAM,aAAa,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;4CACzC,IAAI,aAAa,EAAE;gDACjB,KAAK,CAAC,SAAS,CAAC,aAAa,CAAC,CAAA;6CAC/B;yCACF;qCACF;oCAAC,OAAO,CAAC,EAAE;wCACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;wCAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,CAAA;qCAChC;oCACD,WAAW,EAAE,CAAA;gCACf,CAAC,EACD,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,SAGZ,CACC,CACH,CACZ,CAAC,CACQ,CACN,CACO,CAChB,CACJ,CACa;QAChB,oBAAC,OAAO,OAAG;QACX,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAAE,KAAK,EAAC,SAAS,aAE5C,CACK,CACT,CACV,CAAA;AACH,CAAC"}

package/esm/LinearGenomeView/components/SequenceSearchDialog.js

@@ -1,22 +1,15 @@
 import React, { useState } from 'react';
-import { Button, Checkbox, Dialog, DialogActions, DialogContent, DialogTitle, Divider, FormGroup, FormControlLabel, IconButton, TextField, Typography, } from '@mui/material';
+import { Button, Checkbox, DialogActions, DialogContent, FormGroup, FormControlLabel, TextField, Typography, } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
 import { getSnapshot } from 'mobx-state-tree';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { getSession } from '@jbrowse/core/util';
-// icons
-import CloseIcon from '@mui/icons-material/Close';
-const useStyles = makeStyles()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
+const useStyles = makeStyles()({
     dialogContent: {
         width: '40em',
     },
-}));
+});
 function SequenceDialog({ model, handleClose, }) {
     const { classes } = useStyles();
     const [value, setValue] = useState('');
@@ -30,12 +23,7 @@ function SequenceDialog({ model, handleClose, }) {
     catch (e) {
         error = e;
     }
-    return (React.createElement(Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
-        React.createElement(DialogTitle, null,
-            "Sequence search",
-            handleClose ? (React.createElement(IconButton, { className: classes.closeButton, onClick: () => handleClose(), size: "large" },
-                React.createElement(CloseIcon, null))) : null),
-        React.createElement(Divider, null),
+    return (React.createElement(Dialog, { maxWidth: "xl", open: true, onClose: handleClose, title: "Sequence search" },
         React.createElement(DialogContent, { className: classes.dialogContent },
             React.createElement(Typography, null, "Supply a sequence to search for. A track will be created with the resulting matches once submitted. You can also supply regex style expressions e.g. AACT(C|T)."),
             React.createElement(TextField, { value: value, onChange: e => setValue(e.target.value), helperText: "Sequence search pattern" }),

package/esm/LinearGenomeView/components/SequenceSearchDialog.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/TrackContainer.js

@@ -3,9 +3,9 @@ import { Paper } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { isAlive } from 'mobx-state-tree';
+import { ErrorBoundary } from 'react-error-boundary';
 import { getConf } from '@jbrowse/core/configuration';
 import { ResizeHandle, ErrorMessage } from '@jbrowse/core/ui';
-import { ErrorBoundary } from 'react-error-boundary';
 import { useDebouncedCallback } from '@jbrowse/core/util';
 import TrackLabel from './TrackLabel';
 const useStyles = makeStyles()({
@@ -29,7 +29,7 @@ const useStyles = makeStyles()({
     trackLabel: {
         zIndex: 3,
     },
-    // aligns with block bounderies. check for example the breakpoint split view
+    // aligns with block boundaries. check for example the breakpoint split view
     // demo to see if features align if wanting to change things
     renderingComponentContainer: {
         position: 'absolute',

package/esm/LinearGenomeView/components/TrackContainer.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/TracksContainer.js

@@ -1,13 +1,17 @@
-import React, { useEffect, useRef, useState } from 'react';
+import React, { useRef } from 'react';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
-import normalizeWheel from 'normalize-wheel';
-// locals
+import { Menu } from '@jbrowse/core/ui';
+// local utils
 import { SCALE_BAR_HEIGHT } from '..';
-import RubberBand from './RubberBand';
-import ScaleBar from './ScaleBar';
+import { useSideScroll, useRangeSelect, useWheelScroll } from './hooks';
+// local components
+import Rubberband from './Rubberband';
+import Scalebar from './Scalebar';
 import Gridlines from './Gridlines';
 import CenterLine from './CenterLine';
+import VerticalGuide from './VerticalGuide';
+import RubberbandSpan from './RubberbandSpan';
 const useStyles = makeStyles()({
     tracksContainer: {
         position: 'relative',
@@ -20,123 +24,22 @@ const useStyles = makeStyles()({
 });
 function TracksContainer({ children, model, }) {
     const { classes } = useStyles();
-    // refs are to store these variables to avoid repeated rerenders associated
-    // with useState/setState
-    const delta = useRef(0);
-    const scheduled = useRef(false);
-    const timeout = useRef();
+    const { mouseDown: mouseDown1, mouseUp } = useSideScroll(model);
     const ref = useRef(null);
-    const prevX = useRef(0);
-    const [mouseDragging, setMouseDragging] = useState(false);
-    useEffect(() => {
-        let cleanup = () => { };
-        function globalMouseMove(event) {
-            event.preventDefault();
-            const currX = event.clientX;
-            const distance = currX - prevX.current;
-            if (distance) {
-                // use rAF to make it so multiple event handlers aren't fired per-frame
-                // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
-                if (!scheduled.current) {
-                    scheduled.current = true;
-                    window.requestAnimationFrame(() => {
-                        model.horizontalScroll(-distance);
-                        scheduled.current = false;
-                        prevX.current = event.clientX;
-                    });
-                }
-            }
-        }
-        function globalMouseUp() {
-            prevX.current = 0;
-            if (mouseDragging) {
-                setMouseDragging(false);
-            }
-        }
-        if (mouseDragging) {
-            window.addEventListener('mousemove', globalMouseMove, true);
-            window.addEventListener('mouseup', globalMouseUp, true);
-            cleanup = () => {
-                window.removeEventListener('mousemove', globalMouseMove, true);
-                window.removeEventListener('mouseup', globalMouseUp, true);
-            };
-        }
-        return cleanup;
-    }, [model, mouseDragging, prevX]);
-    function mouseDown(event) {
-        // check if clicking a draggable element or a resize handle
-        const target = event.target;
-        if (target.draggable || target.dataset.resizer) {
-            return;
-        }
-        // otherwise do click and drag scroll
-        if (event.button === 0) {
-            prevX.current = event.clientX;
-            setMouseDragging(true);
-        }
-    }
-    // this local mouseup is used in addition to the global because sometimes
-    // the global add/remove are not called in time, resulting in issue #533
-    function mouseUp(event) {
-        event.preventDefault();
-        setMouseDragging(false);
-    }
-    function mouseLeave(event) {
-        event.preventDefault();
-    }
-    useEffect(() => {
-        const curr = ref.current;
-        // if ctrl is held down, zoom in with y-scroll
-        // else scroll horizontally with x-scroll
-        function onWheel(origEvent) {
-            const event = normalizeWheel(origEvent);
-            if (origEvent.ctrlKey === true) {
-                origEvent.preventDefault();
-                delta.current += event.pixelY / 500;
-                model.setScaleFactor(delta.current < 0 ? 1 - delta.current : 1 / (1 + delta.current));
-                if (timeout.current) {
-                    clearTimeout(timeout.current);
-                }
-                timeout.current = setTimeout(() => {
-                    model.setScaleFactor(1);
-                    model.zoomTo(delta.current > 0
-                        ? model.bpPerPx * (1 + delta.current)
-                        : model.bpPerPx / (1 - delta.current));
-                    delta.current = 0;
-                }, 300);
-            }
-            else {
-                // this is needed to stop the event from triggering "back button
-                // action" on MacOSX etc.  but is a heuristic to avoid preventing the
-                // inner-track scroll behavior
-                if (Math.abs(event.pixelX) > Math.abs(2 * event.pixelY)) {
-                    origEvent.preventDefault();
-                }
-                delta.current += event.pixelX;
-                if (!scheduled.current) {
-                    // use rAF to make it so multiple event handlers aren't fired per-frame
-                    // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
-                    scheduled.current = true;
-                    window.requestAnimationFrame(() => {
-                        model.horizontalScroll(delta.current);
-                        delta.current = 0;
-                        scheduled.current = false;
-                    });
-                }
-            }
-        }
-        if (curr) {
-            curr.addEventListener('wheel', onWheel);
-            return () => {
-                curr.removeEventListener('wheel', onWheel);
-            };
-        }
-        return () => { };
-    }, [model]);
-    return (React.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: mouseDown, onMouseUp: mouseUp, onMouseLeave: mouseLeave },
+    const { guideX, rubberbandOn, leftBpOffset, rightBpOffset, numOfBpSelected, width, left, anchorPosition, handleMenuItemClick, open, handleClose, mouseMove, mouseDown: mouseDown2, } = useRangeSelect(ref, model, true);
+    useWheelScroll(ref, model);
+    return (React.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: event => {
+            mouseDown1(event);
+            mouseDown2(event);
+        }, onMouseMove: mouseMove, onMouseUp: mouseUp },
         model.showGridlines ? React.createElement(Gridlines, { model: model }) : null,
         model.showCenterLine ? React.createElement(CenterLine, { model: model }) : null,
-        React.createElement(RubberBand, { model: model, ControlComponent: React.createElement(ScaleBar, { model: model, style: { height: SCALE_BAR_HEIGHT, boxSizing: 'border-box' } }) }),
+        guideX !== undefined ? (React.createElement(VerticalGuide, { model: model, coordX: guideX })) : rubberbandOn ? (React.createElement(RubberbandSpan, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, numOfBpSelected: numOfBpSelected, width: width, left: left })) : null,
+        anchorPosition ? (React.createElement(Menu, { anchorReference: "anchorPosition", anchorPosition: {
+                left: anchorPosition.clientX,
+                top: anchorPosition.clientY,
+            }, onMenuItemClick: handleMenuItemClick, open: open, onClose: handleClose, menuItems: model.rubberBandMenuItems() })) : null,
+        React.createElement(Rubberband, { model: model, ControlComponent: React.createElement(Scalebar, { model: model, style: { height: SCALE_BAR_HEIGHT, boxSizing: 'border-box' } }) }),
         children));
 }
 export default observer(TracksContainer);

package/esm/LinearGenomeView/components/TracksContainer.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TracksContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TracksContainer.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AAEvC,cAAc;AACd,OAAO,EAAyB,gBAAgB,EAAE,MAAM,IAAI,CAAA;AAC5D,OAAO,EAAE,aAAa,EAAE,cAAc,EAAE,cAAc,EAAE,MAAM,SAAS,CAAA;AAEvE,mBAAmB;AACnB,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,QAAQ,MAAM,YAAY,CAAA;AACjC,OAAO,SAAS,MAAM,aAAa,CAAA;AACnC,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,aAAa,MAAM,iBAAiB,CAAA;AAC3C,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAE7C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,eAAe,EAAE;QACf,QAAQ,EAAE,UAAU;QACpB,QAAQ,EAAE,QAAQ;KACnB;IACD,MAAM,EAAE;QACN,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAIF,SAAS,eAAe,CAAC,EACvB,QAAQ,EACR,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,OAAO,EAAE,GAAG,aAAa,CAAC,KAAK,CAAC,CAAA;IAC/D,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,EACJ,MAAM,EACN,YAAY,EACZ,YAAY,EACZ,aAAa,EACb,eAAe,EACf,KAAK,EACL,IAAI,EACJ,cAAc,EACd,mBAAmB,EACnB,IAAI,EACJ,WAAW,EACX,SAAS,EACT,SAAS,EAAE,UAAU,GACtB,GAAG,cAAc,CAAC,GAAG,EAAE,KAAK,EAAE,IAAI,CAAC,CAAA;IACpC,cAAc,CAAC,GAAG,EAAE,KAAK,CAAC,CAAA;IAE1B,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,iBACI,gBAAgB,EAC5B,SAAS,EAAE,OAAO,CAAC,eAAe,EAClC,WAAW,EAAE,KAAK,CAAC,EAAE;YACnB,UAAU,CAAC,KAAK,CAAC,CAAA;YACjB,UAAU,CAAC,KAAK,CAAC,CAAA;QACnB,CAAC,EACD,WAAW,EAAE,SAAS,EACtB,SAAS,EAAE,OAAO;QAEjB,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QACxD,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QAC1D,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,CACtB,oBAAC,aAAa,IAAC,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,GAAI,CAChD,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,CACjB,oBAAC,cAAc,IACb,YAAY,EAAE,YAAY,EAC1B,aAAa,EAAE,aAAa,EAC5B,eAAe,EAAE,eAAe,EAChC,KAAK,EAAE,KAAK,EACZ,IAAI,EAAE,IAAI,GACV,CACH,CAAC,CAAC,CAAC,IAAI;QACP,cAAc,CAAC,CAAC,CAAC,CAChB,oBAAC,IAAI,IACH,eAAe,EAAC,gBAAgB,EAChC,cAAc,EAAE;gBACd,IAAI,EAAE,cAAc,CAAC,OAAO;gBAC5B,GAAG,EAAE,cAAc,CAAC,OAAO;aAC5B,EACD,eAAe,EAAE,mBAAmB,EACpC,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,WAAW,EACpB,SAAS,EAAE,KAAK,CAAC,mBAAmB,EAAE,GACtC,CACH,CAAC,CAAC,CAAC,IAAI;QAER,oBAAC,UAAU,IACT,KAAK,EAAE,KAAK,EACZ,gBAAgB,EACd,oBAAC,QAAQ,IACP,KAAK,EAAE,KAAK,EACZ,KAAK,EAAE,EAAE,MAAM,EAAE,gBAAgB,EAAE,SAAS,EAAE,YAAY,EAAE,GAC5D,GAEJ;QACD,QAAQ,CACL,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,eAAe,CAAC,CAAA"}

package/esm/LinearGenomeView/components/VerticalGuide.d.ts

@@ -0,0 +1,9 @@
+/// <reference types="react" />
+import { LinearGenomeViewModel } from '..';
+type LGV = LinearGenomeViewModel;
+declare function VerticalGuide({ model, coordX }: {
+    model: LGV;
+    coordX: number;
+}): JSX.Element;
+declare const _default: typeof VerticalGuide;
+export default _default;

package/esm/LinearGenomeView/components/VerticalGuide.js

@@ -0,0 +1,24 @@
+import React from 'react';
+import { Tooltip } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import { observer } from 'mobx-react';
+import { stringify } from '@jbrowse/core/util';
+const useStyles = makeStyles()({
+    guide: {
+        pointerEvents: 'none',
+        height: '100%',
+        width: 1,
+        position: 'absolute',
+        zIndex: 10,
+    },
+});
+function VerticalGuide({ model, coordX }) {
+    const { classes } = useStyles();
+    return (React.createElement(Tooltip, { open: true, placement: "top", title: stringify(model.pxToBp(coordX)), arrow: true },
+        React.createElement("div", { className: classes.guide, style: {
+                left: coordX,
+                background: 'red',
+            } })));
+}
+export default observer(VerticalGuide);
+//# sourceMappingURL=VerticalGuide.js.map

package/esm/LinearGenomeView/components/VerticalGuide.js.map

@@ -0,0 +1 @@
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package/esm/LinearGenomeView/components/hooks.d.ts

@@ -0,0 +1,65 @@
+import React from 'react';
+import { LinearGenomeViewModel } from '..';
+type LGV = LinearGenomeViewModel;
+export declare function useSideScroll(model: LGV): {
+    mouseDown: (event: React.MouseEvent) => void;
+    mouseUp: (event: React.MouseEvent) => void;
+};
+interface AnchorPosition {
+    offsetX: number;
+    clientX: number;
+    clientY: number;
+}
+export declare function useRangeSelect(ref: React.RefObject<HTMLDivElement>, model: LGV, shiftOnly?: boolean): {
+    open: boolean;
+    guideX: number | undefined;
+    mouseDown: (event: React.MouseEvent<HTMLDivElement>) => void;
+    mouseMove: (event: React.MouseEvent<HTMLDivElement>) => void;
+    mouseOut: () => void;
+    handleMenuItemClick: (_: unknown, callback: Function) => void;
+    rubberbandOn?: undefined;
+    handleClose?: undefined;
+    leftBpOffset?: undefined;
+    rightBpOffset?: undefined;
+    anchorPosition?: undefined;
+    numOfBpSelected?: undefined;
+    width?: undefined;
+    left?: undefined;
+} | {
+    open: boolean;
+    rubberbandOn: boolean;
+    mouseDown: (event: React.MouseEvent<HTMLDivElement>) => void;
+    mouseMove: (event: React.MouseEvent<HTMLDivElement>) => void;
+    mouseOut: () => void;
+    handleClose: () => void;
+    handleMenuItemClick: (_: unknown, callback: Function) => void;
+    leftBpOffset: {
+        coord: number;
+        index: number;
+        refName: string;
+        oob: boolean;
+        assemblyName: string;
+        offset: number;
+        start: number;
+        end: number;
+        reversed: boolean;
+    };
+    rightBpOffset: {
+        coord: number;
+        index: number;
+        refName: string;
+        oob: boolean;
+        assemblyName: string;
+        offset: number;
+        start: number;
+        end: number;
+        reversed: boolean;
+    };
+    anchorPosition: AnchorPosition | undefined;
+    numOfBpSelected: number;
+    width: number;
+    left: number;
+    guideX?: undefined;
+};
+export declare function useWheelScroll(ref: React.RefObject<HTMLDivElement>, model: LGV): void;
+export {};