@jbrowse/plugin-linear-genome-view 2.2.1 → 2.3.0

package/esm/LinearGenomeView/components/{OverviewScaleBar.js → OverviewScalebar.js}

@@ -2,49 +2,50 @@ import React from 'react';
 import { Typography, useTheme, alpha } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
+// core
 import Base1DView from '@jbrowse/core/util/Base1DViewModel';
 import { getSession, getTickDisplayStr } from '@jbrowse/core/util';
 import { ContentBlock } from '@jbrowse/core/util/blockTypes';
 // locals
 import { HEADER_BAR_HEIGHT, HEADER_OVERVIEW_HEIGHT, } from '..';
 import { chooseGridPitch } from '../util';
-import OverviewRubberBand from './OverviewRubberBand';
+import OverviewRubberband from './OverviewRubberband';
 const wholeSeqSpacer = 2;
 const useStyles = makeStyles()(theme => ({
-    scaleBar: {
+    scalebar: {
         height: HEADER_OVERVIEW_HEIGHT,
     },
-    scaleBarBorder: {
+    scalebarBorder: {
         border: '1px solid',
     },
-    scaleBarContig: {
+    scalebarContig: {
         backgroundColor: theme.palette.background.default,
         position: 'absolute',
         top: 0,
         height: HEADER_OVERVIEW_HEIGHT,
     },
-    scaleBarContigForward: {
+    scalebarContigForward: {
         backgroundImage: `url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 15 9'%3E%3Cpath d='M-.1 0L6 4.5L-.1 9' fill='none' stroke='%23ddd'/%3E%3C/svg%3E")`,
         backgroundRepeat: 'repeat',
     },
-    scaleBarContigReverse: {
+    scalebarContigReverse: {
         backgroundImage: `url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 15 9'%3E%3Cpath d='M6 0L0 4.5L6 9' fill='none' stroke='%23ddd'/%3E%3C/svg%3E")`,
         backgroundRepeat: 'repeat',
     },
-    scaleBarRefName: {
+    scalebarRefName: {
         position: 'absolute',
         fontWeight: 'bold',
         pointerEvents: 'none',
         zIndex: 100,
     },
-    scaleBarLabel: {
+    scalebarLabel: {
         height: HEADER_OVERVIEW_HEIGHT,
         position: 'absolute',
         display: 'flex',
         justifyContent: 'center',
         pointerEvents: 'none',
     },
-    scaleBarVisibleRegion: {
+    scalebarVisibleRegion: {
         position: 'absolute',
         height: HEADER_OVERVIEW_HEIGHT,
         pointerEvents: 'none',
@@ -202,18 +203,18 @@ const OverviewBox = observer(({ scale, model, block, overview, }) => {
         React.createElement(Typography, { style: {
                 left: block.offsetPx + 3,
                 color: canDisplayCytobands ? 'black' : refNameColor,
-            }, className: classes.scaleBarRefName }, refName),
-        React.createElement("div", { className: cx(classes.scaleBarContig, canDisplayCytobands
+            }, className: classes.scalebarRefName }, refName),
+        React.createElement("div", { className: cx(classes.scalebarContig, canDisplayCytobands
                 ? undefined
                 : reversed
-                    ? classes.scaleBarContigReverse
-                    : classes.scaleBarContigForward, !canDisplayCytobands ? classes.scaleBarBorder : undefined), style: {
+                    ? classes.scalebarContigReverse
+                    : classes.scalebarContigForward, !canDisplayCytobands ? classes.scalebarBorder : undefined), style: {
                 left: block.offsetPx + cytobandOffset,
                 width: block.widthPx,
                 borderColor: refNameColor,
             } },
             !canDisplayCytobands
-                ? tickLabels.map((tickLabel, labelIdx) => (React.createElement(Typography, { key: `${JSON.stringify(block)}-${tickLabel}-${labelIdx}`, className: classes.scaleBarLabel, variant: "body2", style: {
+                ? tickLabels.map((tickLabel, labelIdx) => (React.createElement(Typography, { key: `${JSON.stringify(block)}-${tickLabel}-${labelIdx}`, className: classes.scalebarLabel, variant: "body2", style: {
                         left: ((labelIdx + 1) * majorPitch) / scale,
                         pointerEvents: 'none',
                         color: refNameColor,
@@ -222,14 +223,14 @@ const OverviewBox = observer(({ scale, model, block, overview, }) => {
             canDisplayCytobands ? (React.createElement("svg", { style: { width: '100%' } },
                 React.createElement(Cytobands, { overview: overview, assembly: assembly, block: block }))) : null)));
 });
-const ScaleBar = observer(({ model, scale, overview, }) => {
+const Scalebar = observer(({ model, scale, overview, }) => {
     const { classes } = useStyles();
     const theme = useTheme();
     const { dynamicBlocks, showCytobands, cytobandOffset } = model;
     const visibleRegions = dynamicBlocks.contentBlocks;
     const overviewVisibleRegions = overview.dynamicBlocks;
     const { tertiary, primary } = theme.palette;
-    const scaleBarColor = tertiary ? tertiary.light : primary.light;
+    const scalebarColor = tertiary ? tertiary.light : primary.light;
     if (!visibleRegions.length) {
         return null;
     }
@@ -243,17 +244,17 @@ const ScaleBar = observer(({ model, scale, overview, }) => {
         ...last,
         coord: last.reversed ? last.start : last.end,
     }) || 0;
-    const color = showCytobands ? '#f00' : scaleBarColor;
+    const color = showCytobands ? '#f00' : scalebarColor;
     const transparency = showCytobands ? 0.1 : 0.3;
-    return (React.createElement("div", { className: classes.scaleBar },
-        React.createElement("div", { className: classes.scaleBarVisibleRegion, style: {
+    return (React.createElement("div", { className: classes.scalebar },
+        React.createElement("div", { className: classes.scalebarVisibleRegion, style: {
                 width: lastOverviewPx - firstOverviewPx,
                 left: firstOverviewPx + cytobandOffset,
                 background: alpha(color, transparency),
                 borderColor: color,
             } }),
         overviewVisibleRegions.map((block, idx) => {
-            return !(block instanceof ContentBlock) ? (React.createElement("div", { key: `${JSON.stringify(block)}-${idx}`, className: classes.scaleBarContig, style: {
+            return !(block instanceof ContentBlock) ? (React.createElement("div", { key: `${JSON.stringify(block)}-${idx}`, className: classes.scalebarContig, style: {
                     width: block.widthPx,
                     left: block.offsetPx,
                     backgroundColor: '#999',
@@ -261,7 +262,7 @@ const ScaleBar = observer(({ model, scale, overview, }) => {
                 } })) : (React.createElement(OverviewBox, { scale: scale, block: block, model: model, overview: overview, key: `${JSON.stringify(block)}-${idx}` }));
         })));
 });
-function OverviewScaleBar({ model, children, }) {
+function OverviewScalebar({ model, children, }) {
     const { classes } = useStyles();
     const { totalBp, width, cytobandOffset, displayedRegions } = model;
     const overview = Base1DView.create({
@@ -274,12 +275,12 @@ function OverviewScaleBar({ model, children, }) {
     overview.showAllRegions();
     const scale = totalBp / (modWidth - (displayedRegions.length - 1) * wholeSeqSpacer);
     return (React.createElement("div", null,
-        React.createElement(OverviewRubberBand, { model: model, overview: overview, ControlComponent: React.createElement(ScaleBar, { model: model, overview: overview, scale: scale }) }),
+        React.createElement(OverviewRubberband, { model: model, overview: overview, ControlComponent: React.createElement(Scalebar, { model: model, overview: overview, scale: scale }) }),
         React.createElement("div", { className: classes.overview },
             React.createElement("svg", { height: HEADER_BAR_HEIGHT, className: classes.overviewSvg },
                 React.createElement(Polygon, { model: model, overview: overview })),
             children)));
 }
-export default observer(OverviewScaleBar);
+export default observer(OverviewScalebar);
 export { Cytobands, Polygon };
-//# sourceMappingURL=OverviewScaleBar.js.map
+//# sourceMappingURL=OverviewScalebar.js.map

package/esm/LinearGenomeView/components/OverviewScalebar.js.map

@@ -0,0 +1 @@
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package/esm/LinearGenomeView/components/RefNameAutocomplete.js

@@ -89,7 +89,7 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
     }, [assemblyName, fetchResults, debouncedSearch, session, model]);
     const inputBoxVal = coarseVisibleLocStrings || value || '';
     // heuristic, text width + icon width
-    // + 45 accomodates help icon and search icon
+    // + 45 accommodates help icon and search icon
     const width = Math.min(Math.max(measureText(inputBoxVal, 16) + 45, minWidth), 550);
     // notes on implementation:
     // The selectOnFocus setting helps highlight the field when clicked

package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/{RubberBand.d.ts → Rubberband.d.ts}

@@ -1,9 +1,9 @@
 import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
-declare function RubberBand({ model, ControlComponent, }: {
+declare function Rubberband({ model, ControlComponent, }: {
     model: LGV;
     ControlComponent?: React.ReactElement;
 }): JSX.Element;
-declare const _default: typeof RubberBand;
+declare const _default: typeof Rubberband;
 export default _default;

package/esm/LinearGenomeView/components/Rubberband.js

@@ -0,0 +1,29 @@
+import React, { useRef } from 'react';
+import { observer } from 'mobx-react';
+import { makeStyles } from 'tss-react/mui';
+import { Menu } from '@jbrowse/core/ui';
+// locals
+import VerticalGuide from './VerticalGuide';
+import RubberbandSpan from './RubberbandSpan';
+import { useRangeSelect } from './hooks';
+const useStyles = makeStyles()({
+    rubberbandControl: {
+        cursor: 'crosshair',
+        width: '100%',
+        minHeight: 8,
+    },
+});
+function Rubberband({ model, ControlComponent = React.createElement("div", null), }) {
+    const ref = useRef(null);
+    const { classes } = useStyles();
+    const { guideX, rubberbandOn, leftBpOffset, rightBpOffset, numOfBpSelected, width, left, anchorPosition, handleMenuItemClick, open, handleClose, mouseMove, mouseDown, mouseOut, } = useRangeSelect(ref, model);
+    return (React.createElement(React.Fragment, null,
+        guideX !== undefined ? (React.createElement(VerticalGuide, { model: model, coordX: guideX })) : rubberbandOn ? (React.createElement(RubberbandSpan, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, numOfBpSelected: numOfBpSelected, width: width, left: left })) : null,
+        anchorPosition ? (React.createElement(Menu, { anchorReference: "anchorPosition", anchorPosition: {
+                left: anchorPosition.clientX,
+                top: anchorPosition.clientY,
+            }, onMenuItemClick: handleMenuItemClick, open: open, onClose: handleClose, menuItems: model.rubberBandMenuItems() })) : null,
+        React.createElement("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl, ref: ref, onMouseDown: mouseDown, onMouseMove: mouseMove, onMouseOut: mouseOut }, ControlComponent)));
+}
+export default observer(Rubberband);
+//# sourceMappingURL=Rubberband.js.map

package/esm/LinearGenomeView/components/Rubberband.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"Rubberband.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Rubberband.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AACrC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AAEvC,SAAS;AACT,OAAO,aAAa,MAAM,iBAAiB,CAAA;AAC3C,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,EAAE,cAAc,EAAE,MAAM,SAAS,CAAA;AAKxC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,iBAAiB,EAAE;QACjB,MAAM,EAAE,WAAW;QACnB,KAAK,EAAE,MAAM;QACb,SAAS,EAAE,CAAC;KACb;CACF,CAAC,CAAA;AAEF,SAAS,UAAU,CAAC,EAClB,KAAK,EACL,gBAAgB,GAAG,gCAAO,GAI3B;IACC,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,MAAM,EACJ,MAAM,EACN,YAAY,EACZ,YAAY,EACZ,aAAa,EACb,eAAe,EACf,KAAK,EACL,IAAI,EACJ,cAAc,EACd,mBAAmB,EACnB,IAAI,EACJ,WAAW,EACX,SAAS,EACT,SAAS,EACT,QAAQ,GACT,GAAG,cAAc,CAAC,GAAG,EAAE,KAAK,CAAC,CAAA;IAE9B,OAAO,CACL;QACG,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,CACtB,oBAAC,aAAa,IAAC,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,GAAI,CAChD,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,CACjB,oBAAC,cAAc,IACb,YAAY,EAAE,YAAY,EAC1B,aAAa,EAAE,aAAa,EAC5B,eAAe,EAAE,eAAe,EAChC,KAAK,EAAE,KAAK,EACZ,IAAI,EAAE,IAAI,GACV,CACH,CAAC,CAAC,CAAC,IAAI;QACP,cAAc,CAAC,CAAC,CAAC,CAChB,oBAAC,IAAI,IACH,eAAe,EAAC,gBAAgB,EAChC,cAAc,EAAE;gBACd,IAAI,EAAE,cAAc,CAAC,OAAO;gBAC5B,GAAG,EAAE,cAAc,CAAC,OAAO;aAC5B,EACD,eAAe,EAAE,mBAAmB,EACpC,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,WAAW,EACpB,SAAS,EAAE,KAAK,CAAC,mBAAmB,EAAE,GACtC,CACH,CAAC,CAAC,CAAC,IAAI;QACR,4CACc,qBAAqB,EACjC,SAAS,EAAE,OAAO,CAAC,iBAAiB,EACpC,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,SAAS,EACtB,WAAW,EAAE,SAAS,EACtB,UAAU,EAAE,QAAQ,IAEnB,gBAAgB,CACb,CACL,CACJ,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,UAAU,CAAC,CAAA"}

package/esm/LinearGenomeView/components/RubberbandSpan.d.ts

@@ -0,0 +1,14 @@
+/// <reference types="react" />
+interface Offset {
+    coord: number;
+    refName?: string;
+    oob?: boolean;
+}
+declare function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, }: {
+    leftBpOffset: Offset;
+    rightBpOffset: Offset;
+    numOfBpSelected?: number;
+    left: number;
+    width: number;
+}): JSX.Element;
+export default RubberbandSpan;

package/esm/LinearGenomeView/components/RubberbandSpan.js

@@ -0,0 +1,65 @@
+import React, { useRef } from 'react';
+import { makeStyles } from 'tss-react/mui';
+import { Popover, Typography, alpha } from '@mui/material';
+import { stringify, toLocale } from '@jbrowse/core/util';
+const useStyles = makeStyles()(theme => {
+    const { primary, tertiary } = theme.palette;
+    const background = tertiary
+        ? alpha(tertiary.main, 0.7)
+        : alpha(primary.main, 0.7);
+    return {
+        rubberband: {
+            height: '100%',
+            background,
+            position: 'absolute',
+            zIndex: 10,
+            textAlign: 'center',
+            overflow: 'hidden',
+        },
+        rubberbandControl: {
+            cursor: 'crosshair',
+            width: '100%',
+            minHeight: 8,
+        },
+        rubberbandText: {
+            color: tertiary ? tertiary.contrastText : primary.contrastText,
+        },
+        popover: {
+            mouseEvents: 'none',
+            cursor: 'crosshair',
+        },
+        paper: {
+            paddingLeft: theme.spacing(1),
+            paddingRight: theme.spacing(1),
+        },
+    };
+});
+function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, }) {
+    const ref = useRef(null);
+    const { classes } = useStyles();
+    return (React.createElement(React.Fragment, null,
+        ref.current ? (React.createElement(React.Fragment, null,
+            React.createElement(Popover, { className: classes.popover, classes: { paper: classes.paper }, open: true, anchorEl: ref.current, anchorOrigin: {
+                    vertical: 'top',
+                    horizontal: 'left',
+                }, transformOrigin: {
+                    vertical: 'bottom',
+                    horizontal: 'right',
+                }, keepMounted: true, disableRestoreFocus: true },
+                React.createElement(Typography, null, stringify(leftBpOffset))),
+            React.createElement(Popover, { className: classes.popover, classes: {
+                    paper: classes.paper,
+                }, open: true, anchorEl: ref.current, anchorOrigin: {
+                    vertical: 'top',
+                    horizontal: 'right',
+                }, transformOrigin: {
+                    vertical: 'bottom',
+                    horizontal: 'left',
+                }, keepMounted: true, disableRestoreFocus: true },
+                React.createElement(Typography, null, stringify(rightBpOffset))))) : null,
+        React.createElement("div", { ref: ref, className: classes.rubberband, style: { left, width } }, numOfBpSelected ? (React.createElement(Typography, { variant: "h6", className: classes.rubberbandText },
+            toLocale(numOfBpSelected),
+            " bp")) : null)));
+}
+export default RubberbandSpan;
+//# sourceMappingURL=RubberbandSpan.js.map

package/esm/LinearGenomeView/components/RubberbandSpan.js.map

@@ -0,0 +1 @@
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package/esm/LinearGenomeView/components/Ruler.d.ts

@@ -1,27 +1,11 @@
 /// <reference types="react" />
-import ReactPropTypes from 'prop-types';
 declare function Ruler({ start, end, bpPerPx, reversed, major, minor, }: {
     start: number;
     end: number;
     bpPerPx: number;
     reversed?: boolean;
-    major: boolean;
-    minor: boolean;
+    major?: boolean;
+    minor?: boolean;
 }): JSX.Element;
-declare namespace Ruler {
-    var propTypes: {
-        start: ReactPropTypes.Validator<number>;
-        end: ReactPropTypes.Validator<number>;
-        bpPerPx: ReactPropTypes.Validator<number>;
-        reversed: ReactPropTypes.Requireable<boolean>;
-        major: ReactPropTypes.Requireable<boolean>;
-        minor: ReactPropTypes.Requireable<boolean>;
-    };
-    var defaultProps: {
-        reversed: boolean;
-        major: boolean;
-        minor: boolean;
-    };
-}
 declare const _default: typeof Ruler;
 export default _default;

package/esm/LinearGenomeView/components/Ruler.js

@@ -1,24 +1,21 @@
+import React from 'react';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
-import ReactPropTypes from 'prop-types';
-import React from 'react';
-import { makeTicks } from '../util';
 import { getTickDisplayStr } from '@jbrowse/core/util';
-const useStyles = makeStyles()(( /* theme */) => ({
+// locals
+import { makeTicks } from '../util';
+const useStyles = makeStyles()({
     majorTickLabel: {
         fontSize: '11px',
-        // fill: theme.palette.text.primary,
     },
     majorTick: {
         stroke: '#555',
-        // stroke: theme.palette.text.secondary,
     },
     minorTick: {
         stroke: '#999',
-        // stroke: theme.palette.text.hint,
     },
-}));
-function Ruler({ start, end, bpPerPx, reversed, major, minor, }) {
+});
+function Ruler({ start, end, bpPerPx, reversed = false, major = true, minor = true, }) {
     const { classes } = useStyles();
     const ticks = makeTicks(start, end, bpPerPx, major, minor);
     return (React.createElement(React.Fragment, null,
@@ -33,18 +30,5 @@ function Ruler({ start, end, bpPerPx, reversed, major, minor, }) {
             return (React.createElement("text", { x: x - 3, y: 7 + 11, key: `label-${tick.base}`, style: { fontSize: '11px' }, className: classes.majorTickLabel }, getTickDisplayStr(tick.base + 1, bpPerPx)));
         })));
 }
-Ruler.propTypes = {
-    start: ReactPropTypes.number.isRequired,
-    end: ReactPropTypes.number.isRequired,
-    bpPerPx: ReactPropTypes.number.isRequired,
-    reversed: ReactPropTypes.bool,
-    major: ReactPropTypes.bool,
-    minor: ReactPropTypes.bool,
-};
-Ruler.defaultProps = {
-    reversed: false,
-    major: true,
-    minor: true,
-};
 export default observer(Ruler);
 //# sourceMappingURL=Ruler.js.map

package/esm/LinearGenomeView/components/Ruler.js.map

@@ -1 +1 @@
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+{"version":3,"file":"Ruler.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Ruler.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAEtD,SAAS;AACT,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AAEnC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,cAAc,EAAE;QACd,QAAQ,EAAE,MAAM;KACjB;IACD,SAAS,EAAE;QACT,MAAM,EAAE,MAAM;KACf;IACD,SAAS,EAAE;QACT,MAAM,EAAE,MAAM;KACf;CACF,CAAC,CAAA;AAEF,SAAS,KAAK,CAAC,EACb,KAAK,EACL,GAAG,EACH,OAAO,EACP,QAAQ,GAAG,KAAK,EAChB,KAAK,GAAG,IAAI,EACZ,KAAK,GAAG,IAAI,GAQb;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,CAAA;IAC1D,OAAO,CACL;QACG,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;YAChB,MAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;YACpE,OAAO,CACL,8BACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EACjC,WAAW,EAAE,CAAC,EACd,MAAM,EAAE,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,EAC/C,SAAS,EACP,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,SAAS,aAEtD,IAAI,CAAC,IAAI,GAClB,CACH,CAAA;QACH,CAAC,CAAC;QACD,KAAK;aACH,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC;aACrC,GAAG,CAAC,IAAI,CAAC,EAAE;YACV,MAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;YACpE,OAAO,CACL,8BACE,CAAC,EAAE,CAAC,GAAG,CAAC,EACR,CAAC,EAAE,CAAC,GAAG,EAAE,EACT,GAAG,EAAE,SAAS,IAAI,CAAC,IAAI,EAAE,EACzB,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,EAC3B,SAAS,EAAE,OAAO,CAAC,cAAc,IAEhC,iBAAiB,CAAC,IAAI,CAAC,IAAI,GAAG,CAAC,EAAE,OAAO,CAAC,CACrC,CACR,CAAA;QACH,CAAC,CAAC,CACH,CACJ,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,KAAK,CAAC,CAAA"}

package/esm/LinearGenomeView/components/{ScaleBar.d.ts → Scalebar.d.ts}

@@ -1,10 +1,10 @@
 import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
-interface ScaleBarProps {
+interface ScalebarProps {
     model: LGV;
     style?: React.CSSProperties;
     className?: string;
 }
-declare const _default: React.ForwardRefExoticComponent<ScaleBarProps & React.RefAttributes<HTMLDivElement>>;
+declare const _default: React.ForwardRefExoticComponent<ScalebarProps & React.RefAttributes<HTMLDivElement>>;
 export default _default;

package/esm/LinearGenomeView/components/{ScaleBar.js → Scalebar.js}

@@ -7,15 +7,15 @@ import { ContentBlock as ContentBlockComponent, ElidedBlock as ElidedBlockCompon
 import { makeTicks } from '../util';
 import { getTickDisplayStr } from '@jbrowse/core/util';
 const useStyles = makeStyles()(theme => ({
-    scaleBarContainer: {
+    scalebarContainer: {
         overflow: 'hidden',
         position: 'relative',
     },
-    scaleBarZoomContainer: {
+    scalebarZoomContainer: {
         position: 'relative',
         zIndex: 1,
     },
-    scaleBar: {
+    scalebar: {
         position: 'absolute',
         display: 'flex',
         pointerEvents: 'none',
@@ -65,7 +65,7 @@ const RenderedRefNameLabels = observer(({ model }) => {
             }, className: classes.refLabel, "data-testid": `refLabel-${block.refName}` }, block.refName)) : null;
     })));
 });
-const RenderedScaleBarLabels = observer(({ model }) => {
+const RenderedScalebarLabels = observer(({ model }) => {
     const { classes } = useStyles();
     const { bpPerPx, staticBlocks } = model;
     return (React.createElement(React.Fragment, null, staticBlocks.map((block, index) => {
@@ -90,23 +90,23 @@ const RenderedScaleBarLabels = observer(({ model }) => {
         return null;
     })));
 });
-const ScaleBar = React.forwardRef(({ model, style, className, ...other }, ref) => {
+const Scalebar = React.forwardRef(({ model, style, className, ...other }, ref) => {
     const { classes, cx } = useStyles();
     const offsetLeft = model.staticBlocks.offsetPx - model.offsetPx;
     return (React.createElement(Paper, { "data-resizer": "true" // used to avoid click-and-drag scrolls on trackscontainer
-        , className: cx(classes.scaleBarContainer, className), variant: "outlined", ref: ref, style: style, ...other },
-        React.createElement("div", { className: classes.scaleBarZoomContainer, style: {
+        , className: cx(classes.scalebarContainer, className), variant: "outlined", ref: ref, style: style, ...other },
+        React.createElement("div", { className: classes.scalebarZoomContainer, style: {
                 transform: model.scaleFactor !== 1
                     ? `scaleX(${model.scaleFactor})`
                     : undefined,
             } },
-            React.createElement("div", { className: classes.scaleBar, style: {
+            React.createElement("div", { className: classes.scalebar, style: {
                     left: offsetLeft - 1,
                     width: model.staticBlocks.totalWidthPx,
                     ...style,
                 } },
-                React.createElement(RenderedScaleBarLabels, { model: model }))),
+                React.createElement(RenderedScalebarLabels, { model: model }))),
         React.createElement(RenderedRefNameLabels, { model: model })));
 });
-export default observer(ScaleBar);
-//# sourceMappingURL=ScaleBar.js.map
+export default observer(Scalebar);
+//# sourceMappingURL=Scalebar.js.map

package/esm/LinearGenomeView/components/{ScaleBar.js.map → Scalebar.js.map}

@@ -1 +1 @@
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+{"version":3,"file":"Scalebar.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Scalebar.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACjD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EACL,YAAY,EACZ,WAAW,EACX,uBAAuB,GACxB,MAAM,+BAA+B,CAAA;AACtC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EACL,YAAY,IAAI,qBAAqB,EACrC,WAAW,IAAI,oBAAoB,EACnC,uBAAuB,IAAI,gCAAgC,GAC5D,MAAM,0CAA0C,CAAA;AACjD,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AACnC,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAItD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,iBAAiB,EAAE;QACjB,QAAQ,EAAE,QAAQ;QAClB,QAAQ,EAAE,UAAU;KACrB;IACD,qBAAqB,EAAE;QACrB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;IACD,QAAQ,EAAE;QACR,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,MAAM;KACtB;IACD,cAAc,EAAE;QACd,QAAQ,EAAE,MAAM;QAChB,MAAM,EAAE,CAAC;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;QAC1C,UAAU,EAAE,QAAQ;QACpB,aAAa,EAAE,MAAM;KACtB;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,CAAC;QACR,OAAO,EAAE,MAAM;QACf,cAAc,EAAE,QAAQ;QACxB,aAAa,EAAE,MAAM;KACtB;IACD,QAAQ,EAAE;QACR,QAAQ,EAAE,MAAM;QAChB,QAAQ,EAAE,UAAU;QACpB,IAAI,EAAE,KAAK;QACX,GAAG,EAAE,MAAM;QACX,UAAU,EAAE,MAAM;QAClB,UAAU,EAAE,QAAQ;QACpB,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;QACrB,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;KAC3C;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,qBAAqB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACnE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,iEAAiE;IACjE,IAAI,aAAa,GAAG,CAAC,CAAA;IACrB,KAAK,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,CAAC,EAAE,EAAE;QACtC,IAAI,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,GAAG,CAAC,EAAE;YACvC,aAAa,GAAG,CAAC,CAAA;SAClB;IACH,CAAC,CAAC,CAAA;IACF,OAAO,CACL,0CACG,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACvC,OAAO,KAAK,YAAY,YAAY;YAClC,CAAC,KAAK,CAAC,0BAA0B,IAAI,KAAK,KAAK,aAAa,CAAC,CAAC,CAAC,CAAC,CAChE,oBAAC,UAAU,IACT,GAAG,EAAE,YAAY,KAAK,CAAC,GAAG,IAAI,KAAK,EAAE,EACrC,KAAK,EAAE;gBACL,IAAI,EACF,KAAK,KAAK,aAAa;oBACrB,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC;oBAC9B,CAAC,CAAC,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,GAAG,CAAC;gBACzC,WAAW,EAAE,KAAK,KAAK,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;aAC7C,EACD,SAAS,EAAE,OAAO,CAAC,QAAQ,iBACd,YAAY,KAAK,CAAC,OAAO,EAAE,IAEvC,KAAK,CAAC,OAAO,CACH,CACd,CAAC,CAAC,CAAC,IAAI,CAAA;IACV,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,sBAAsB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACpE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;IAEvC,OAAO,CACL,0CACG,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACjC,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;QACpD,IAAI,KAAK,YAAY,YAAY,EAAE;YACjC,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,IAAI,EAAE,KAAK,CAAC,CAAA;YAEzD,OAAO,CACL,oBAAC,qBAAqB,IAAC,GAAG,EAAE,GAAG,GAAG,IAAI,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,IACxD,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;gBAChB,IAAI,IAAI,CAAC,IAAI,KAAK,OAAO,EAAE;oBACzB,MAAM,CAAC,GACL,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;oBAC5D,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,GAAG,CAAC,CAAA;oBAChC,OAAO,CACL,6BACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,IAEjB,UAAU,CAAC,CAAC,CAAC,CACZ,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,IAC1C,iBAAiB,CAAC,UAAU,EAAE,OAAO,CAAC,CAC5B,CACd,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;iBACF;gBACD,OAAO,IAAI,CAAA;YACb,CAAC,CAAC,CACoB,CACzB,CAAA;SACF;QACD,IAAI,KAAK,YAAY,WAAW,EAAE;YAChC,OAAO,oBAAC,oBAAoB,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,OAAO,GAAI,CAAA;SAC1D;QACD,IAAI,KAAK,YAAY,uBAAuB,EAAE;YAC5C,OAAO,CACL,oBAAC,gCAAgC,IAC/B,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,OAAO,EACd,KAAK,EAAE,EAAE,UAAU,EAAE,MAAM,EAAE,EAC7B,QAAQ,EAAE,KAAK,CAAC,OAAO,KAAK,UAAU,GACtC,CACH,CAAA;SACF;QACD,OAAO,IAAI,CAAA;IACb,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAQF,MAAM,QAAQ,GAAG,KAAK,CAAC,UAAU,CAC/B,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,KAAK,EAAE,EAAE,GAAG,EAAE,EAAE;IAC7C,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IAEnC,MAAM,UAAU,GAAG,KAAK,CAAC,YAAY,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAA;IAC/D,OAAO,CACL,oBAAC,KAAK,oBACS,MAAM,CAAC,0DAA0D;UAC9E,SAAS,EAAE,EAAE,CAAC,OAAO,CAAC,iBAAiB,EAAE,SAAS,CAAC,EACnD,OAAO,EAAC,UAAU,EAClB,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,KAAK,KACR,KAAK;QAET,6BACE,SAAS,EAAE,OAAO,CAAC,qBAAqB,EACxC,KAAK,EAAE;gBACL,SAAS,EACP,KAAK,CAAC,WAAW,KAAK,CAAC;oBACrB,CAAC,CAAC,UAAU,KAAK,CAAC,WAAW,GAAG;oBAChC,CAAC,CAAC,SAAS;aAChB;YAED,6BACE,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,KAAK,EAAE;oBACL,IAAI,EAAE,UAAU,GAAG,CAAC;oBACpB,KAAK,EAAE,KAAK,CAAC,YAAY,CAAC,YAAY;oBACtC,GAAG,KAAK;iBACT;gBAED,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC,CACF;QACN,oBAAC,qBAAqB,IAAC,KAAK,EAAE,KAAK,GAAI,CACjC,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,eAAe,QAAQ,CAAC,QAAQ,CAAC,CAAA"}

package/esm/LinearGenomeView/components/SearchBox.js

@@ -21,11 +21,11 @@ function SearchBox({ model, showHelp, }) {
     const assemblyName = assemblyNames[0];
     const assembly = assemblyManager.get(assemblyName);
     const searchScope = model.searchScope(assemblyName);
-    function navToOption(option) {
+    async function navToOption(option) {
         const location = option.getLocation();
         const trackId = option.getTrackId();
         if (location) {
-            model.navToLocString(location, assemblyName);
+            await model.navToLocString(location, assemblyName);
             if (trackId) {
                 model.showTrack(trackId);
             }
@@ -37,9 +37,13 @@ function SearchBox({ model, showHelp, }) {
     // 2) if it's a single result navigate to it
     // 3) else assume it's a locstring and navigate to it
     async function handleSelectedRegion(option) {
+        var _a;
         try {
             if (option.hasLocation()) {
-                navToOption(option);
+                await navToOption(option);
+            }
+            else if ((_a = option.results) === null || _a === void 0 ? void 0 : _a.length) {
+                model.setSearchResults(option.results, option.getLabel());
             }
             else {
                 const input = option.getLabel();
@@ -47,7 +51,7 @@ function SearchBox({ model, showHelp, }) {
                 const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
                 if (allRefs.includes(input) ||
                     (allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
-                    model.navToLocString(input, assemblyName);
+                    await model.navToLocString(input, assemblyName);
                 }
                 else {
                     const results = await fetchResults({
@@ -62,10 +66,10 @@ function SearchBox({ model, showHelp, }) {
                         model.setSearchResults(results, input.toLowerCase());
                     }
                     else if (results.length === 1) {
-                        navToOption(results[0]);
+                        await navToOption(results[0]);
                     }
                     else {
-                        model.navToLocString(input, assemblyName);
+                        await model.navToLocString(input, assemblyName);
                     }
                 }
             }

package/esm/LinearGenomeView/components/SearchBox.js.map

@@ -1 +1 @@
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