@jbrowse/plugin-linear-genome-view 2.2.1 → 2.3.0

package/dist/LinearGenomeView/model.js.map

@@ -0,0 +1 @@
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package/dist/index.d.ts

@@ -1,9 +1,9 @@
 /// <reference types="react" />
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
-import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigSchema, BlockModel } from './BaseLinearDisplay';
+import { BaseLinearDisplay, BaseLinearDisplayComponent, BlockModel, BlockMsg, baseLinearDisplayConfigSchema } from './BaseLinearDisplay';
 import { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
-import { LinearGenomeViewModel, LinearGenomeViewStateModel, renderToSvg, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
+import { renderToSvg, LinearGenomeViewModel, LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
 import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory } from './LinearBasicDisplay';
 export default class LinearGenomeViewPlugin extends Plugin {
     name: string;
@@ -161,10 +161,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 reload(): void;
             } & {
                 currBpPerPx: number;
+                scrollTop: number;
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                scrollTop: number;
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
@@ -339,10 +339,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 reload(): void;
             } & {
                 currBpPerPx: number;
+                scrollTop: number;
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                scrollTop: number;
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
@@ -527,10 +527,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
             reload(): void;
         } & {
             currBpPerPx: number;
+            scrollTop: number;
             message: string;
             featureIdUnderMouse: string | undefined;
             contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-            scrollTop: number;
             estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
             estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
         } & {
@@ -1793,6 +1793,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
     install(pluginManager: PluginManager): void;
     configure(pluginManager: PluginManager): void;
 }
-export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, };
+export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, BlockMsg, };
 export type { LinearGenomeViewModel, LinearGenomeViewStateModel, BlockModel };
 export type { BaseLinearDisplayModel } from './BaseLinearDisplay';

package/dist/index.js

@@ -26,29 +26,29 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.SearchBox = exports.RefNameAutocomplete = exports.BaseLinearDisplay = exports.BaseLinearDisplayComponent = exports.renderToSvg = exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.linearBareDisplayConfigSchemaFactory = exports.baseLinearDisplayConfigSchema = void 0;
-const react_1 = require("react");
-const mobx_1 = require("mobx");
-const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
-const ViewType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/ViewType"));
+exports.BlockMsg = exports.SearchBox = exports.RefNameAutocomplete = exports.BaseLinearDisplay = exports.BaseLinearDisplayComponent = exports.renderToSvg = exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.linearBareDisplayConfigSchemaFactory = exports.baseLinearDisplayConfigSchema = void 0;
 const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
 const util_1 = require("@jbrowse/core/util");
+// icons
 const LineStyle_1 = __importDefault(require("@mui/icons-material/LineStyle"));
+// locals
 const BaseLinearDisplay_1 = require("./BaseLinearDisplay");
 Object.defineProperty(exports, "BaseLinearDisplay", { enumerable: true, get: function () { return BaseLinearDisplay_1.BaseLinearDisplay; } });
 Object.defineProperty(exports, "BaseLinearDisplayComponent", { enumerable: true, get: function () { return BaseLinearDisplay_1.BaseLinearDisplayComponent; } });
+Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return BaseLinearDisplay_1.BlockMsg; } });
 Object.defineProperty(exports, "baseLinearDisplayConfigSchema", { enumerable: true, get: function () { return BaseLinearDisplay_1.baseLinearDisplayConfigSchema; } });
-const LinearBareDisplay_1 = require("./LinearBareDisplay");
+const LinearBareDisplay_1 = __importStar(require("./LinearBareDisplay"));
 Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBareDisplay_1.configSchemaFactory; } });
-const LinearGenomeView_1 = require("./LinearGenomeView");
+const LinearGenomeView_1 = __importStar(require("./LinearGenomeView"));
 Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return LinearGenomeView_1.renderToSvg; } });
 Object.defineProperty(exports, "RefNameAutocomplete", { enumerable: true, get: function () { return LinearGenomeView_1.RefNameAutocomplete; } });
 Object.defineProperty(exports, "SearchBox", { enumerable: true, get: function () { return LinearGenomeView_1.SearchBox; } });
-const LinearBasicDisplay_1 = require("./LinearBasicDisplay");
+const LinearBasicDisplay_1 = __importStar(require("./LinearBasicDisplay"));
 Object.defineProperty(exports, "linearBasicDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBasicDisplay_1.configSchema; } });
 Object.defineProperty(exports, "linearBasicDisplayModelFactory", { enumerable: true, get: function () { return LinearBasicDisplay_1.modelFactory; } });
 const FeatureTrack_1 = __importDefault(require("./FeatureTrack"));
 const BasicTrack_1 = __importDefault(require("./BasicTrack"));
+const LaunchLinearGenomeView_1 = __importDefault(require("./LaunchLinearGenomeView"));
 class LinearGenomeViewPlugin extends Plugin_1.default {
     constructor() {
         super(...arguments);
@@ -65,71 +65,10 @@ class LinearGenomeViewPlugin extends Plugin_1.default {
     install(pluginManager) {
         (0, FeatureTrack_1.default)(pluginManager);
         (0, BasicTrack_1.default)(pluginManager);
-        pluginManager.addDisplayType(() => {
-            const configSchema = (0, LinearBareDisplay_1.configSchemaFactory)(pluginManager);
-            return new DisplayType_1.default({
-                name: 'LinearBareDisplay',
-                configSchema,
-                stateModel: (0, LinearBareDisplay_1.stateModelFactory)(configSchema),
-                trackType: 'BasicTrack',
-                viewType: 'LinearGenomeView',
-                ReactComponent: BaseLinearDisplay_1.BaseLinearDisplayComponent,
-            });
-        });
-        pluginManager.addDisplayType(() => {
-            const configSchema = (0, LinearBasicDisplay_1.configSchema)(pluginManager);
-            return new DisplayType_1.default({
-                name: 'LinearBasicDisplay',
-                configSchema,
-                stateModel: (0, LinearBasicDisplay_1.modelFactory)(configSchema),
-                trackType: 'FeatureTrack',
-                viewType: 'LinearGenomeView',
-                ReactComponent: BaseLinearDisplay_1.BaseLinearDisplayComponent,
-            });
-        });
-        pluginManager.addViewType(() => new ViewType_1.default({
-            name: 'LinearGenomeView',
-            stateModel: (0, LinearGenomeView_1.stateModelFactory)(pluginManager),
-            ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./LinearGenomeView/components/LinearGenomeView')))),
-        }));
-        pluginManager.addToExtensionPoint('LaunchView-LinearGenomeView', 
-        // @ts-ignore
-        async ({ session, assembly, loc, tracks = [], }) => {
-            try {
-                const { assemblyManager } = session;
-                const view = session.addView('LinearGenomeView', {});
-                await (0, mobx_1.when)(() => !!view.volatileWidth);
-                if (!assembly) {
-                    throw new Error('No assembly provided when launching linear genome view');
-                }
-                const asm = await assemblyManager.waitForAssembly(assembly);
-                if (!asm) {
-                    throw new Error(`Assembly "${assembly}" not found when launching linear genome view`);
-                }
-                view.navToLocString(loc, assembly);
-                const idsNotFound = [];
-                tracks.forEach(track => {
-                    try {
-                        view.showTrack(track);
-                    }
-                    catch (e) {
-                        if (`${e}`.match('Could not resolve identifier')) {
-                            idsNotFound.push(track);
-                        }
-                        else {
-                            throw e;
-                        }
-                    }
-                });
-                if (idsNotFound.length) {
-                    throw new Error(`Could not resolve identifiers: ${idsNotFound.join(',')}`);
-                }
-            }
-            catch (e) {
-                session.notify(`${e}`, 'error');
-                throw e;
-            }
-        });
+        (0, LinearBasicDisplay_1.default)(pluginManager);
+        (0, LinearGenomeView_1.default)(pluginManager);
+        (0, LinearBareDisplay_1.default)(pluginManager);
+        (0, LaunchLinearGenomeView_1.default)(pluginManager);
     }
     configure(pluginManager) {
         if ((0, util_1.isAbstractMenuManager)(pluginManager.rootModel)) {

package/dist/index.js.map

@@ -1 +1 @@
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package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts

@@ -1,9 +1,10 @@
 import React from 'react';
 import Tooltip from './Tooltip';
+import BlockMsg from './BlockMsg';
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
 declare const BaseLinearDisplay: (props: {
     model: BaseLinearDisplayModel;
     children?: React.ReactNode;
 }) => JSX.Element;
 export default BaseLinearDisplay;
-export { Tooltip };
+export { Tooltip, BlockMsg };

package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js

@@ -6,6 +6,7 @@ import { getConf } from '@jbrowse/core/configuration';
 import { Menu } from '@jbrowse/core/ui';
 // locals
 import Tooltip from './Tooltip';
+import BlockMsg from './BlockMsg';
 import LinearBlocks from './LinearBlocks';
 const useStyles = makeStyles()({
     display: {
@@ -16,7 +17,7 @@ const useStyles = makeStyles()({
         minHeight: '100%',
     },
 });
-const BaseLinearDisplay = observer((props) => {
+const BaseLinearDisplay = observer(function (props) {
     const { classes } = useStyles();
     const theme = useTheme();
     const ref = useRef(null);
@@ -64,5 +65,5 @@ const BaseLinearDisplay = observer((props) => {
                 : undefined, style: { zIndex: theme.zIndex.tooltip }, menuItems: contextMenuItems() })));
 });
 export default BaseLinearDisplay;
-export { Tooltip };
+export { Tooltip, BlockMsg };
 //# sourceMappingURL=BaseLinearDisplay.js.map

package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js.map

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package/esm/BaseLinearDisplay/components/Block.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
 import { BaseBlock } from '@jbrowse/core/util/blockTypes';
-declare const ContentBlock: ({ block, children }: {
+declare const ContentBlock: ({ block, children, }: {
     block: BaseBlock;
     children: React.ReactNode;
 }) => JSX.Element;

package/esm/BaseLinearDisplay/components/Block.js

@@ -24,7 +24,7 @@ const useStyles = makeStyles()(theme => ({
         backgroundColor: theme.palette.action.disabledBackground,
     },
 }));
-const ContentBlock = observer(({ block, children }) => {
+const ContentBlock = observer(function ({ block, children, }) {
     const { classes } = useStyles();
     const { widthPx } = block;
     return (React.createElement("div", { style: { width: widthPx }, className: classes.contentBlock }, children));

package/esm/BaseLinearDisplay/components/Block.js.map

@@ -1 +1 @@
-{"version":3,"file":"Block.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/Block.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,YAAY,EAAE;QACZ,QAAQ,EAAE,UAAU;QACpB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,YAAY;QACvB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,QAAQ;KACnB;IACD,WAAW,EAAE;QACX,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,YAAY;QACvB,eAAe,EAAE,MAAM;QACvB,eAAe,EACb,oHAAoH;KACvH;IACD,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO;KAC5C;IACD,oBAAoB,EAAE;QACpB,SAAS,EAAE,MAAM;QACjB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB;KACzD;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,YAAY,GAAG,QAAQ,CAC3B,CAAC,EAAE,KAAK,EAAE,QAAQ,EAAmD,EAAE,EAAE;IACvE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACzB,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE,SAAS,EAAE,OAAO,CAAC,YAAY,IAC5D,QAAQ,CACL,CACP,CAAA;AACH,CAAC,CACF,CAAA;AAED,SAAS,WAAW,CAAC,EAAE,KAAK,EAAqB;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,6BAAK,SAAS,EAAE,OAAO,CAAC,WAAW,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,GAAI,CAAA;AAClE,CAAC;AAED,SAAS,uBAAuB,CAAC,EAC/B,QAAQ,EACR,KAAK,EACL,KAAK,GAAG,EAAE,GAKX;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,6BACE,KAAK,EAAE;YACL,GAAG,KAAK;YACR,KAAK;SACN,EACD,SAAS,EACP,QAAQ;YACN,CAAC,CAAC,OAAO,CAAC,oBAAoB;YAC9B,CAAC,CAAC,OAAO,CAAC,uBAAuB,GAErC,CACH,CAAA;AACH,CAAC;AAED,OAAO,EAAE,YAAY,EAAE,WAAW,EAAE,uBAAuB,EAAE,CAAA"}
+{"version":3,"file":"Block.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/Block.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,YAAY,EAAE;QACZ,QAAQ,EAAE,UAAU;QACpB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,YAAY;QACvB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,QAAQ;KACnB;IACD,WAAW,EAAE;QACX,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,YAAY;QACvB,eAAe,EAAE,MAAM;QACvB,eAAe,EACb,oHAAoH;KACvH;IACD,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO;KAC5C;IACD,oBAAoB,EAAE;QACpB,SAAS,EAAE,MAAM;QACjB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB;KACzD;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,YAAY,GAAG,QAAQ,CAAC,UAAU,EACtC,KAAK,EACL,QAAQ,GAIT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACzB,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE,SAAS,EAAE,OAAO,CAAC,YAAY,IAC5D,QAAQ,CACL,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,WAAW,CAAC,EAAE,KAAK,EAAqB;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,6BAAK,SAAS,EAAE,OAAO,CAAC,WAAW,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,GAAI,CAAA;AAClE,CAAC;AAED,SAAS,uBAAuB,CAAC,EAC/B,QAAQ,EACR,KAAK,EACL,KAAK,GAAG,EAAE,GAKX;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,6BACE,KAAK,EAAE;YACL,GAAG,KAAK;YACR,KAAK;SACN,EACD,SAAS,EACP,QAAQ;YACN,CAAC,CAAC,OAAO,CAAC,oBAAoB;YAC9B,CAAC,CAAC,OAAO,CAAC,uBAAuB,GAErC,CACH,CAAA;AACH,CAAC;AAED,OAAO,EAAE,YAAY,EAAE,WAAW,EAAE,uBAAuB,EAAE,CAAA"}

package/esm/BaseLinearDisplay/components/BlockMsg.js

@@ -10,7 +10,8 @@ const useStyles = makeStyles()({
 export default function BlockMsg({ message, severity, buttonText, icon, action, }) {
     const { classes } = useStyles();
     const button = action ? (React.createElement(Button, { "data-testid": "reload_button", onClick: action, startIcon: icon }, buttonText)) : null;
-    return (React.createElement(Tooltip, { title: message },
-        React.createElement(Alert, { severity: severity, action: button, classes: { message: classes.ellipses } }, message)));
+    return (React.createElement(Alert, { severity: severity, action: button, classes: { message: classes.ellipses } },
+        React.createElement(Tooltip, { title: message },
+            React.createElement("div", null, message))));
 }
 //# sourceMappingURL=BlockMsg.js.map

package/esm/BaseLinearDisplay/components/BlockMsg.js.map

@@ -1 +1 @@
-{"version":3,"file":"BlockMsg.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/BlockMsg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,EAAc,MAAM,eAAe,CAAA;AAClE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,QAAQ,EAAE;QACR,YAAY,EAAE,UAAU;QACxB,QAAQ,EAAE,QAAQ;KACnB;CACF,CAAC,CAAA;AAEF,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,EAC/B,OAAO,EACP,QAAQ,EACR,UAAU,EACV,IAAI,EACJ,MAAM,GAOP;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CACtB,oBAAC,MAAM,mBAAa,eAAe,EAAC,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,IAAI,IACjE,UAAU,CACJ,CACV,CAAC,CAAC,CAAC,IAAI,CAAA;IACR,OAAO,CACL,oBAAC,OAAO,IAAC,KAAK,EAAE,OAAO;QACrB,oBAAC,KAAK,IACJ,QAAQ,EAAE,QAAQ,EAClB,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,EAAE,OAAO,EAAE,OAAO,CAAC,QAAQ,EAAE,IAErC,OAAO,CACF,CACA,CACX,CAAA;AACH,CAAC"}
+{"version":3,"file":"BlockMsg.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/BlockMsg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,EAAc,MAAM,eAAe,CAAA;AAClE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,QAAQ,EAAE;QACR,YAAY,EAAE,UAAU;QACxB,QAAQ,EAAE,QAAQ;KACnB;CACF,CAAC,CAAA;AAEF,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,EAC/B,OAAO,EACP,QAAQ,EACR,UAAU,EACV,IAAI,EACJ,MAAM,GAOP;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CACtB,oBAAC,MAAM,mBAAa,eAAe,EAAC,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,IAAI,IACjE,UAAU,CACJ,CACV,CAAC,CAAC,CAAC,IAAI,CAAA;IACR,OAAO,CACL,oBAAC,KAAK,IACJ,QAAQ,EAAE,QAAQ,EAClB,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,EAAE,OAAO,EAAE,OAAO,CAAC,QAAQ,EAAE;QAEtC,oBAAC,OAAO,IAAC,KAAK,EAAE,OAAO;YACrB,iCAAM,OAAO,CAAO,CACZ,CACJ,CACT,CAAA;AACH,CAAC"}

package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts

@@ -11,7 +11,7 @@ declare const useStyles: (params: void, styleOverrides?: {
     css: import("tss-react").Css;
     cx: import("tss-react").Cx;
 };
-declare const RenderedBlocks: ({ model }: {
+declare const RenderedBlocks: ({ model, }: {
     model: BaseLinearDisplayModel;
 }) => JSX.Element;
 declare function LinearBlocks({ model }: {

package/esm/BaseLinearDisplay/components/LinearBlocks.js

@@ -25,7 +25,7 @@ const useStyles = makeStyles()({
         boxSizing: 'border-box',
     },
 });
-const RenderedBlocks = observer(({ model }) => {
+const RenderedBlocks = observer(function ({ model, }) {
     const { classes } = useStyles();
     const { blockDefinitions, blockState } = model;
     return (React.createElement(React.Fragment, null, blockDefinitions.map(block => {
@@ -52,7 +52,7 @@ function LinearBlocks({ model }) {
     const { classes } = useStyles();
     const { blockDefinitions } = model;
     const viewModel = getContainingView(model);
-    return (React.createElement("div", { "data-testid": "Blockset", className: classes.linearBlocks, style: {
+    return (React.createElement("div", { className: classes.linearBlocks, style: {
             left: blockDefinitions.offsetPx - viewModel.offsetPx,
         } },
         React.createElement(RenderedBlocks, { model: model })));

package/esm/BaseLinearDisplay/components/LinearBlocks.js.map

@@ -1 +1 @@
-{"version":3,"file":"LinearBlocks.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/LinearBlocks.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,YAAY,EACZ,WAAW,EACX,uBAAuB,GACxB,MAAM,+BAA+B,CAAA;AAGtC,OAAO,EACL,YAAY,IAAI,qBAAqB,EACrC,WAAW,IAAI,oBAAoB,EACnC,uBAAuB,IAAI,gCAAgC,GAC5D,MAAM,SAAS,CAAA;AAGhB,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,YAAY,EAAE;QACZ,UAAU,EAAE,QAAQ;QACpB,SAAS,EAAE,MAAM;QACjB,QAAQ,EAAE,UAAU;QACpB,SAAS,EAAE,MAAM;QACjB,OAAO,EAAE,MAAM;KAChB;IACD,gBAAgB,EAAE;QAChB,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,eAAe;QACtB,YAAY,EAAE,yBAAyB;QACvC,UAAU,EAAE,mBAAmB;QAC/B,UAAU,EAAE,QAAQ;QACpB,KAAK,EAAE,MAAM;QACb,UAAU,EAAE,MAAM;QAClB,SAAS,EAAE,QAAQ;QACnB,MAAM,EAAE,IAAI;QACZ,SAAS,EAAE,YAAY;KACxB;CACF,CAAC,CAAA;AACF,MAAM,cAAc,GAAG,QAAQ,CAC7B,CAAC,EAAE,KAAK,EAAqC,EAAE,EAAE;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,gBAAgB,EAAE,UAAU,EAAE,GAAG,KAAK,CAAA;IAC9C,OAAO,CACL,0CACG,gBAAgB,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE;QAC5B,IAAI,KAAK,YAAY,YAAY,EAAE;YACjC,MAAM,KAAK,GAAG,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;YAEvC,OAAO,CACL,oBAAC,qBAAqB,IACpB,KAAK,EAAE,KAAK,EACZ,GAAG,EAAE,GAAG,KAAK,CAAC,EAAE,IAAI,KAAK,CAAC,GAAG,EAAE;gBAE9B,KAAK,IAAI,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,CAC/B,oBAAC,KAAK,CAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CACvC,CAAC,CAAC,CAAC,IAAI;gBACP,KAAK,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC,CACjC,6BACE,SAAS,EAAE,OAAO,CAAC,gBAAgB,EACnC,KAAK,EAAE;wBACL,GAAG,EAAE,KAAK,CAAC,MAAM,CAAC,cAAc,EAAE,GAAG,EAAE;wBACvC,aAAa,EAAE,MAAM;wBACrB,MAAM,EAAE,EAAE;qBACX,yBAGG,CACP,CAAC,CAAC,CAAC,IAAI,CACc,CACzB,CAAA;SACF;QACD,IAAI,KAAK,YAAY,WAAW,EAAE;YAChC,OAAO,CACL,oBAAC,oBAAoB,IACnB,GAAG,EAAE,GAAG,KAAK,CAAC,EAAE,IAAI,KAAK,CAAC,GAAG,EAAE,EAC/B,KAAK,EAAE,KAAK,CAAC,OAAO,GACpB,CACH,CAAA;SACF;QACD,IAAI,KAAK,YAAY,uBAAuB,EAAE;YAC5C,OAAO,CACL,oBAAC,gCAAgC,IAC/B,GAAG,EAAE,KAAK,CAAC,GAAG,EACd,KAAK,EAAE,KAAK,CAAC,OAAO,EACpB,KAAK,EAAE,EAAE,UAAU,EAAE,MAAM,EAAE,EAC7B,QAAQ,EAAE,KAAK,CAAC,OAAO,KAAK,UAAU,GACtC,CACH,CAAA;SACF;QACD,MAAM,IAAI,KAAK,CAAC,sBAAsB,OAAO,KAAK,EAAE,CAAC,CAAA;IACvD,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CACF,CAAA;AACD,SAAS,YAAY,CAAC,EAAE,KAAK,EAAqC;IAChE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAClC,MAAM,SAAS,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IACnE,OAAO,CACL,4CACc,UAAU,EACtB,SAAS,EAAE,OAAO,CAAC,YAAY,EAC/B,KAAK,EAAE;YACL,IAAI,EAAE,gBAAgB,CAAC,QAAQ,GAAG,SAAS,CAAC,QAAQ;SACrD;QAED,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CAC5B,CACP,CAAA;AACH,CAAC;AAED,OAAO,EAAE,cAAc,EAAE,SAAS,EAAE,CAAA;AACpC,eAAe,QAAQ,CAAC,YAAY,CAAC,CAAA"}
+{"version":3,"file":"LinearBlocks.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/LinearBlocks.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,YAAY,EACZ,WAAW,EACX,uBAAuB,GACxB,MAAM,+BAA+B,CAAA;AAGtC,OAAO,EACL,YAAY,IAAI,qBAAqB,EACrC,WAAW,IAAI,oBAAoB,EACnC,uBAAuB,IAAI,gCAAgC,GAC5D,MAAM,SAAS,CAAA;AAKhB,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,YAAY,EAAE;QACZ,UAAU,EAAE,QAAQ;QACpB,SAAS,EAAE,MAAM;QACjB,QAAQ,EAAE,UAAU;QACpB,SAAS,EAAE,MAAM;QACjB,OAAO,EAAE,MAAM;KAChB;IACD,gBAAgB,EAAE;QAChB,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,eAAe;QACtB,YAAY,EAAE,yBAAyB;QACvC,UAAU,EAAE,mBAAmB;QAC/B,UAAU,EAAE,QAAQ;QACpB,KAAK,EAAE,MAAM;QACb,UAAU,EAAE,MAAM;QAClB,SAAS,EAAE,QAAQ;QACnB,MAAM,EAAE,IAAI;QACZ,SAAS,EAAE,YAAY;KACxB;CACF,CAAC,CAAA;AAEF,MAAM,cAAc,GAAG,QAAQ,CAAC,UAAU,EACxC,KAAK,GAGN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,gBAAgB,EAAE,UAAU,EAAE,GAAG,KAAK,CAAA;IAC9C,OAAO,CACL,0CACG,gBAAgB,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE;QAC5B,IAAI,KAAK,YAAY,YAAY,EAAE;YACjC,MAAM,KAAK,GAAG,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;YAEvC,OAAO,CACL,oBAAC,qBAAqB,IACpB,KAAK,EAAE,KAAK,EACZ,GAAG,EAAE,GAAG,KAAK,CAAC,EAAE,IAAI,KAAK,CAAC,GAAG,EAAE;gBAE9B,KAAK,IAAI,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,CAC/B,oBAAC,KAAK,CAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CACvC,CAAC,CAAC,CAAC,IAAI;gBACP,KAAK,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC,CACjC,6BACE,SAAS,EAAE,OAAO,CAAC,gBAAgB,EACnC,KAAK,EAAE;wBACL,GAAG,EAAE,KAAK,CAAC,MAAM,CAAC,cAAc,EAAE,GAAG,EAAE;wBACvC,aAAa,EAAE,MAAM;wBACrB,MAAM,EAAE,EAAE;qBACX,yBAGG,CACP,CAAC,CAAC,CAAC,IAAI,CACc,CACzB,CAAA;SACF;QACD,IAAI,KAAK,YAAY,WAAW,EAAE;YAChC,OAAO,CACL,oBAAC,oBAAoB,IACnB,GAAG,EAAE,GAAG,KAAK,CAAC,EAAE,IAAI,KAAK,CAAC,GAAG,EAAE,EAC/B,KAAK,EAAE,KAAK,CAAC,OAAO,GACpB,CACH,CAAA;SACF;QACD,IAAI,KAAK,YAAY,uBAAuB,EAAE;YAC5C,OAAO,CACL,oBAAC,gCAAgC,IAC/B,GAAG,EAAE,KAAK,CAAC,GAAG,EACd,KAAK,EAAE,KAAK,CAAC,OAAO,EACpB,KAAK,EAAE,EAAE,UAAU,EAAE,MAAM,EAAE,EAC7B,QAAQ,EAAE,KAAK,CAAC,OAAO,KAAK,UAAU,GACtC,CACH,CAAA;SACF;QACD,MAAM,IAAI,KAAK,CAAC,sBAAsB,OAAO,KAAK,EAAE,CAAC,CAAA;IACvD,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,SAAS,YAAY,CAAC,EAAE,KAAK,EAAqC;IAChE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAClC,MAAM,SAAS,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IACjD,OAAO,CACL,6BACE,SAAS,EAAE,OAAO,CAAC,YAAY,EAC/B,KAAK,EAAE;YACL,IAAI,EAAE,gBAAgB,CAAC,QAAQ,GAAG,SAAS,CAAC,QAAQ;SACrD;QAED,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CAC5B,CACP,CAAA;AACH,CAAC;AAED,OAAO,EAAE,cAAc,EAAE,SAAS,EAAE,CAAA;AACpC,eAAe,QAAQ,CAAC,YAAY,CAAC,CAAA"}

package/esm/BaseLinearDisplay/components/TooLargeMessage.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"TooLargeMessage.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/TooLargeMessage.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,QAAQ,MAAM,wBAAwB,CAAA;AAG7C,SAAS,eAAe,CAAC,EACvB,KAAK,GAQN;IACC,MAAM,EAAE,oBAAoB,EAAE,GAAG,KAAK,CAAA;IACtC,OAAO,CACL,oBAAC,QAAQ,IACP,QAAQ,EAAC,SAAS,EAClB,MAAM,EAAE,GAAG,EAAE;YACX,IAAI,CAAC,KAAK,CAAC,oBAAoB,EAAE;gBAC/B,OAAO,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAA;aAClC;iBAAM;gBACL,KAAK,CAAC,gBAAgB,CAAC,KAAK,CAAC,oBAAoB,CAAC,CAAA;gBAClD,KAAK,CAAC,MAAM,EAAE,CAAA;aACf;QACH,CAAC,EACD,UAAU,EAAC,YAAY,EACvB,OAAO,EAAE,GAAG,oBAAoB,CAAC,CAAC,CAAC,oBAAoB,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE;2DACd,GACrD,CACH,CAAA;AACH,CAAC;AAED,eAAe,eAAe,CAAA"}

package/esm/BaseLinearDisplay/index.d.ts

@@ -1,5 +1,5 @@
-export { baseLinearDisplayConfigSchema } from './models/baseLinearDisplayConfigSchema';
+export { default as baseLinearDisplayConfigSchema } from './models/configSchema';
 export { BaseLinearDisplay } from './models/BaseLinearDisplayModel';
 export type { BlockModel } from './models/serverSideRenderedBlock';
 export type { BaseLinearDisplayModel, BaseLinearDisplayStateModel, } from './models/BaseLinearDisplayModel';
-export { default as BaseLinearDisplayComponent, Tooltip, } from './components/BaseLinearDisplay';
+export { default as BaseLinearDisplayComponent, Tooltip, BlockMsg, } from './components/BaseLinearDisplay';

package/esm/BaseLinearDisplay/index.js

@@ -1,4 +1,4 @@
-export { baseLinearDisplayConfigSchema } from './models/baseLinearDisplayConfigSchema';
+export { default as baseLinearDisplayConfigSchema } from './models/configSchema';
 export { BaseLinearDisplay } from './models/BaseLinearDisplayModel';
-export { default as BaseLinearDisplayComponent, Tooltip, } from './components/BaseLinearDisplay';
+export { default as BaseLinearDisplayComponent, Tooltip, BlockMsg, } from './components/BaseLinearDisplay';
 //# sourceMappingURL=index.js.map

package/esm/BaseLinearDisplay/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BaseLinearDisplay/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,6BAA6B,EAAE,MAAM,wCAAwC,CAAA;AACtF,OAAO,EAAE,iBAAiB,EAAE,MAAM,iCAAiC,CAAA;AAMnE,OAAO,EACL,OAAO,IAAI,0BAA0B,EACrC,OAAO,GACR,MAAM,gCAAgC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BaseLinearDisplay/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,6BAA6B,EAAE,MAAM,uBAAuB,CAAA;AAChF,OAAO,EAAE,iBAAiB,EAAE,MAAM,iCAAiC,CAAA;AAMnE,OAAO,EACL,OAAO,IAAI,0BAA0B,EACrC,OAAO,EACP,QAAQ,GACT,MAAM,gCAAgC,CAAA"}

package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts

@@ -1,10 +1,10 @@
 import React from 'react';
 import { MenuItem } from '@jbrowse/core/ui';
+import { Feature } from '@jbrowse/core/util';
 import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { BaseBlock } from '@jbrowse/core/util/blockTypes';
 import { Region } from '@jbrowse/core/util/types';
 import CompositeMap from '@jbrowse/core/util/compositeMap';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
 import { Instance } from 'mobx-state-tree';
 import { ExportSvgOptions } from '../../LinearGenomeView';
 export interface Layout {
@@ -61,9 +61,6 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         doReload(): void;
         afterAttach(): void;
         setStatus(message: string): void;
-        /**
-         * #property
-         */
         setLoading(abortController: AbortController): void;
         setMessage(messageText: string): void;
         setRendered(props: {
@@ -75,9 +72,6 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         } | undefined): void;
         setError(error: unknown): void;
         reload(): void;
-        /**
-         * #getter
-         */
         beforeDestroy(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     /**
@@ -125,7 +119,9 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
-            error: unknown;
+            error: unknown; /**
+             * #property
+             */
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
     readonly adapterConfig: any;
@@ -137,19 +133,15 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     readonly viewMenuActions: MenuItem[];
     regionCannotBeRendered(): undefined;
 } & {
-    setError(error?: unknown): void; /**
-     * #getter
-     * returns a string feature ID if the globally-selected object
-     * is probably a feature
-     */
+    setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
 } & {
     currBpPerPx: number;
+    scrollTop: number;
     message: string;
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: Feature | undefined;
-    scrollTop: number;
     estimatedRegionStatsP: Promise<Stats> | undefined;
     estimatedRegionStats: Stats | undefined;
 } & {

package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js

@@ -2,17 +2,15 @@
 import React from 'react';
 import { BaseDisplay } from '@jbrowse/core/pluggableElementTypes/models';
 import { getConf } from '@jbrowse/core/configuration';
-import { isAbortException, getContainingView, getContainingTrack, getSession, getViewParams, isSelectionContainer, isSessionModelWithWidgets, } from '@jbrowse/core/util';
+import { isAbortException, getContainingView, getContainingTrack, getSession, getViewParams, isSelectionContainer, isSessionModelWithWidgets, isFeature, } from '@jbrowse/core/util';
 import CompositeMap from '@jbrowse/core/util/compositeMap';
-import { isFeature } from '@jbrowse/core/util/simpleFeature';
 import { getParentRenderProps, getRpcSessionId, } from '@jbrowse/core/util/tracks';
 import { autorun } from 'mobx';
 import { addDisposer, isAlive, types } from 'mobx-state-tree';
 // icons
 import MenuOpenIcon from '@mui/icons-material/MenuOpen';
-// locals
-import TooLargeMessage from './TooLargeMessage';
 import { Tooltip } from '../components/BaseLinearDisplay';
+import TooLargeMessage from '../components/TooLargeMessage';
 import BlockState, { renderBlockData } from './serverSideRenderedBlock';
 // stabilize clipid under test for snapshot
 function getId(id, index) {
@@ -61,10 +59,10 @@ function stateModelFactory() {
     }))
         .volatile(() => ({
         currBpPerPx: 0,
+        scrollTop: 0,
         message: '',
         featureIdUnderMouse: undefined,
         contextMenuFeature: undefined,
-        scrollTop: 0,
         estimatedRegionStatsP: undefined,
         estimatedRegionStats: undefined,
     }))