@jbrowse/plugin-linear-genome-view 2.0.0 → 2.1.2

package/dist/LinearGenomeView/components/OverviewScaleBar.js.map

@@ -1 +1 @@
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package/dist/LinearGenomeView/components/RefNameAutocomplete.js

@@ -1,15 +1,4 @@
 "use strict";
-var __assign = (this && this.__assign) || function () {
-    __assign = Object.assign || function(t) {
-        for (var s, i = 1, n = arguments.length; i < n; i++) {
-            s = arguments[i];
-            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
-                t[p] = s[p];
-        }
-        return t;
-    };
-    return __assign.apply(this, arguments);
-};
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);
@@ -33,172 +22,97 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-var __generator = (this && this.__generator) || function (thisArg, body) {
-    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
-    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
-    function verb(n) { return function (v) { return step([n, v]); }; }
-    function step(op) {
-        if (f) throw new TypeError("Generator is already executing.");
-        while (_) try {
-            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
-            if (y = 0, t) op = [op[0] & 2, t.value];
-            switch (op[0]) {
-                case 0: case 1: t = op; break;
-                case 4: _.label++; return { value: op[1], done: false };
-                case 5: _.label++; y = op[1]; op = [0]; continue;
-                case 7: op = _.ops.pop(); _.trys.pop(); continue;
-                default:
-                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
-                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
-                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
-                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
-                    if (t[2]) _.ops.pop();
-                    _.trys.pop(); continue;
-            }
-            op = body.call(thisArg, _);
-        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
-        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
-    }
-};
-var __read = (this && this.__read) || function (o, n) {
-    var m = typeof Symbol === "function" && o[Symbol.iterator];
-    if (!m) return o;
-    var i = m.call(o), r, ar = [], e;
-    try {
-        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
-    }
-    catch (error) { e = { error: error }; }
-    finally {
-        try {
-            if (r && !r.done && (m = i["return"])) m.call(i);
-        }
-        finally { if (e) throw e.error; }
-    }
-    return ar;
-};
-var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
-    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
-        if (ar || !(i in from)) {
-            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
-            ar[i] = from[i];
-        }
-    }
-    return to.concat(ar || Array.prototype.slice.call(from));
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importStar(require("react"));
-var mobx_react_1 = require("mobx-react");
-var util_1 = require("@jbrowse/core/util");
-var BaseResults_1 = __importStar(require("@jbrowse/core/TextSearch/BaseResults"));
-var material_1 = require("@mui/material");
+const react_1 = __importStar(require("react"));
+const mobx_react_1 = require("mobx-react");
+const util_1 = require("@jbrowse/core/util");
+const BaseResults_1 = __importStar(require("@jbrowse/core/TextSearch/BaseResults"));
+const material_1 = require("@mui/material");
 // icons
-var Search_1 = __importDefault(require("@mui/icons-material/Search"));
-var Help_1 = __importDefault(require("@mui/icons-material/Help"));
-var util_2 = require("./util");
+const Search_1 = __importDefault(require("@mui/icons-material/Search"));
+const Help_1 = __importDefault(require("@mui/icons-material/Help"));
+const util_2 = require("./util");
 // lazy
-var HelpDialog = (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('./HelpDialog')); }); });
+const HelpDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./HelpDialog'))));
 // the logic of this method is to only apply a filter to RefSequenceResults
 // because they do not have a matchedObject. the trix search results already
 // filter so don't need re-filtering
 function filterOptions(options, searchQuery) {
-    return options.filter(function (option) {
-        var result = option.result;
+    return options.filter(option => {
+        const { result } = option;
         return (result.getLabel().toLowerCase().includes(searchQuery) ||
             result.matchedObject);
     });
 }
-function RefNameAutocomplete(_a) {
-    var _this = this;
-    var model = _a.model, onSelect = _a.onSelect, assemblyName = _a.assemblyName, style = _a.style, fetchResults = _a.fetchResults, onChange = _a.onChange, value = _a.value, _b = _a.showHelp, showHelp = _b === void 0 ? true : _b, _c = _a.minWidth, minWidth = _c === void 0 ? 200 : _c, _d = _a.TextFieldProps, TextFieldProps = _d === void 0 ? {} : _d;
-    var session = (0, util_1.getSession)(model);
-    var assemblyManager = session.assemblyManager;
-    var _e = __read((0, react_1.useState)(false), 2), open = _e[0], setOpen = _e[1];
-    var _f = __read((0, react_1.useState)(true), 2), loaded = _f[0], setLoaded = _f[1];
-    var _g = __read((0, react_1.useState)(false), 2), isHelpDialogDisplayed = _g[0], setHelpDialogDisplayed = _g[1];
-    var _h = __read((0, react_1.useState)(''), 2), currentSearch = _h[0], setCurrentSearch = _h[1];
-    var _j = __read((0, react_1.useState)(''), 2), inputValue = _j[0], setInputValue = _j[1];
-    var _k = __read((0, react_1.useState)(), 2), searchOptions = _k[0], setSearchOptions = _k[1];
-    var debouncedSearch = (0, util_1.useDebounce)(currentSearch, 300);
-    var coarseVisibleLocStrings = model.coarseVisibleLocStrings, hasDisplayedRegions = model.hasDisplayedRegions;
-    var assembly = assemblyName ? assemblyManager.get(assemblyName) : undefined;
+function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp = true, minWidth = 200, TextFieldProps = {}, }) {
+    const session = (0, util_1.getSession)(model);
+    const { assemblyManager } = session;
+    const [open, setOpen] = (0, react_1.useState)(false);
+    const [loaded, setLoaded] = (0, react_1.useState)(true);
+    const [isHelpDialogDisplayed, setHelpDialogDisplayed] = (0, react_1.useState)(false);
+    const [currentSearch, setCurrentSearch] = (0, react_1.useState)('');
+    const [inputValue, setInputValue] = (0, react_1.useState)('');
+    const [searchOptions, setSearchOptions] = (0, react_1.useState)();
+    const debouncedSearch = (0, util_1.useDebounce)(currentSearch, 300);
+    const { coarseVisibleLocStrings, hasDisplayedRegions } = model;
+    const assembly = assemblyName ? assemblyManager.get(assemblyName) : undefined;
     // eslint-disable-next-line react-hooks/exhaustive-deps
-    var regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
-    var options = (0, react_1.useMemo)(function () {
-        return regions.map(function (option) { return ({
-            result: new BaseResults_1.RefSequenceResult({
-                refName: option.refName,
-                label: option.refName,
-                matchedAttribute: 'refName',
-            }),
-        }); });
-    }, [regions]);
-    (0, react_1.useEffect)(function () {
-        var active = true;
-        (function () { return __awaiter(_this, void 0, void 0, function () {
-            var results, e_1;
-            return __generator(this, function (_a) {
-                switch (_a.label) {
-                    case 0:
-                        _a.trys.push([0, 2, , 3]);
-                        if (debouncedSearch === '' || !assemblyName) {
-                            return [2 /*return*/];
-                        }
-                        setLoaded(false);
-                        return [4 /*yield*/, fetchResults(debouncedSearch)];
-                    case 1:
-                        results = _a.sent();
-                        if (active) {
-                            setSearchOptions((0, util_2.dedupe)(results, function (r) { return r.getDisplayString(); }).map(function (result) { return ({
-                                result: result,
-                            }); }));
-                            setLoaded(true);
-                        }
-                        return [3 /*break*/, 3];
-                    case 2:
-                        e_1 = _a.sent();
-                        console.error(e_1);
-                        if (active) {
-                            session.notify("".concat(e_1), 'error');
-                        }
-                        return [3 /*break*/, 3];
-                    case 3: return [2 /*return*/];
+    const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
+    const options = (0, react_1.useMemo)(() => regions.map(option => ({
+        result: new BaseResults_1.RefSequenceResult({
+            refName: option.refName,
+            label: option.refName,
+            matchedAttribute: 'refName',
+        }),
+    })), [regions]);
+    (0, react_1.useEffect)(() => {
+        let active = true;
+        (async () => {
+            try {
+                if (debouncedSearch === '' || !assemblyName) {
+                    return;
                 }
-            });
-        }); })();
-        return function () {
+                setLoaded(false);
+                const results = await fetchResults(debouncedSearch);
+                if (active) {
+                    setSearchOptions((0, util_2.dedupe)(results, r => r.getDisplayString()).map(result => ({
+                        result,
+                    })));
+                    setLoaded(true);
+                }
+            }
+            catch (e) {
+                console.error(e);
+                if (active) {
+                    session.notify(`${e}`, 'error');
+                }
+            }
+        })();
+        return () => {
             active = false;
         };
     }, [assemblyName, fetchResults, debouncedSearch, session, model]);
-    var inputBoxVal = coarseVisibleLocStrings || value || '';
+    const inputBoxVal = coarseVisibleLocStrings || value || '';
     // heuristic, text width + icon width
     // + 45 accomodates help icon and search icon
-    var width = Math.min(Math.max((0, util_1.measureText)(inputBoxVal, 16) + 45, minWidth), 550);
+    const width = Math.min(Math.max((0, util_1.measureText)(inputBoxVal, 16) + 45, minWidth), 550);
     // notes on implementation:
     // The selectOnFocus setting helps highlight the field when clicked
     return (react_1.default.createElement(react_1.default.Fragment, null,
-        react_1.default.createElement(material_1.Autocomplete, { id: "refNameAutocomplete-".concat(model.id), "data-testid": "autocomplete", disableListWrap: true, disableClearable: true, disabled: !assemblyName, freeSolo: true, includeInputInList: true, selectOnFocus: true, style: __assign(__assign({}, style), { width: width }), value: inputBoxVal, loading: !loaded, inputValue: inputValue, onInputChange: function (event, newInputValue) {
+        react_1.default.createElement(material_1.Autocomplete, { id: `refNameAutocomplete-${model.id}`, "data-testid": "autocomplete", disableListWrap: true, disableClearable: true, disabled: !assemblyName, freeSolo: true, includeInputInList: true, selectOnFocus: true, style: { ...style, width }, value: inputBoxVal, loading: !loaded, inputValue: inputValue, onInputChange: (event, newInputValue) => {
                 setInputValue(newInputValue);
                 onChange === null || onChange === void 0 ? void 0 : onChange(newInputValue);
-            }, loadingText: "loading results", open: open, onOpen: function () { return setOpen(true); }, onClose: function () {
+            }, loadingText: "loading results", open: open, onOpen: () => setOpen(true), onClose: () => {
                 setOpen(false);
                 setLoaded(true);
                 if (hasDisplayedRegions) {
                     setCurrentSearch('');
                     setSearchOptions(undefined);
                 }
-            }, onChange: function (_event, selectedOption) {
+            }, onChange: (_event, selectedOption) => {
                 if (!selectedOption || !assemblyName) {
                     return;
                 }
@@ -210,37 +124,41 @@ function RefNameAutocomplete(_a) {
                     onSelect === null || onSelect === void 0 ? void 0 : onSelect(selectedOption.result);
                 }
                 setInputValue(inputBoxVal);
-            }, options: !(searchOptions === null || searchOptions === void 0 ? void 0 : searchOptions.length) ? options : searchOptions, getOptionDisabled: function (option) { return (option === null || option === void 0 ? void 0 : option.group) === 'limitOption'; }, filterOptions: function (options, params) {
-                var filtered = filterOptions(options, params.inputValue.toLocaleLowerCase());
-                return __spreadArray(__spreadArray([], __read(filtered.slice(0, 100)), false), __read((filtered.length > 100
-                    ? [
-                        {
-                            group: 'limitOption',
-                            result: new BaseResults_1.default({
-                                label: 'keep typing for more results',
-                            }),
-                        },
-                    ]
-                    : [])), false);
-            }, renderInput: function (params) {
-                var helperText = TextFieldProps.helperText, _a = TextFieldProps.InputProps, InputProps = _a === void 0 ? {} : _a;
-                return (react_1.default.createElement(material_1.TextField, __assign({ onBlur: function () {
-                        // this is used to restore a refName or the non-user-typed input
-                        // to the box on blurring
-                        return setInputValue(inputBoxVal);
-                    } }, params, TextFieldProps, { helperText: helperText, InputProps: __assign(__assign(__assign({}, params.InputProps), InputProps), { endAdornment: (react_1.default.createElement(react_1.default.Fragment, null,
+            }, options: !(searchOptions === null || searchOptions === void 0 ? void 0 : searchOptions.length) ? options : searchOptions, getOptionDisabled: option => (option === null || option === void 0 ? void 0 : option.group) === 'limitOption', filterOptions: (options, params) => {
+                const filtered = filterOptions(options, params.inputValue.toLocaleLowerCase());
+                return [
+                    ...filtered.slice(0, 100),
+                    ...(filtered.length > 100
+                        ? [
+                            {
+                                group: 'limitOption',
+                                result: new BaseResults_1.default({
+                                    label: 'keep typing for more results',
+                                }),
+                            },
+                        ]
+                        : []),
+                ];
+            }, renderInput: params => {
+                const { helperText, InputProps = {} } = TextFieldProps;
+                return (react_1.default.createElement(material_1.TextField, { onBlur: () => 
+                    // this is used to restore a refName or the non-user-typed input
+                    // to the box on blurring
+                    setInputValue(inputBoxVal), ...params, ...TextFieldProps, helperText: helperText, InputProps: {
+                        ...params.InputProps,
+                        ...InputProps,
+                        endAdornment: (react_1.default.createElement(react_1.default.Fragment, null,
                             regions.length === 0 ? (react_1.default.createElement(material_1.CircularProgress, { color: "inherit", size: 20 })) : (react_1.default.createElement(material_1.InputAdornment, { position: "end", style: { marginRight: 7 } },
                                 react_1.default.createElement(Search_1.default, { fontSize: "small" }),
-                                showHelp ? (react_1.default.createElement(material_1.IconButton, { onClick: function () { return setHelpDialogDisplayed(true); }, size: "small" },
+                                showHelp ? (react_1.default.createElement(material_1.IconButton, { onClick: () => setHelpDialogDisplayed(true), size: "small" },
                                     react_1.default.createElement(Help_1.default, { fontSize: "small" }))) : null)),
-                            params.InputProps.endAdornment)) }), placeholder: "Search for location", onChange: function (e) { return setCurrentSearch(e.target.value); } })));
-            }, getOptionLabel: function (option) {
-                return (typeof option === 'string'
-                    ? option
-                    : option.result.getDisplayString()) || '';
-            } }),
+                            params.InputProps.endAdornment)),
+                    }, placeholder: "Search for location", onChange: e => setCurrentSearch(e.target.value) }));
+            }, getOptionLabel: option => (typeof option === 'string'
+                ? option
+                : option.result.getDisplayString()) || '' }),
         isHelpDialogDisplayed ? (react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement("div", null) },
-            react_1.default.createElement(HelpDialog, { handleClose: function () { return setHelpDialogDisplayed(false); } }))) : null));
+            react_1.default.createElement(HelpDialog, { handleClose: () => setHelpDialogDisplayed(false) }))) : null));
 }
 exports.default = (0, mobx_react_1.observer)(RefNameAutocomplete);
 //# sourceMappingURL=RefNameAutocomplete.js.map

package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map

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