npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.0.0 → 2.1.2 - Mend

@jbrowse/plugin-linear-genome-view 2.0.0 → 2.1.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (144) hide show

package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js CHANGED Viewed

@@ -79,6 +79,7 @@ const LoadingMessage = observer(({ model }) => {
         };
     }, []);
     const { status: blockStatus } = model;
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
     const { message: displayStatus } = getParent(model, 2);
     const status = displayStatus || blockStatus;
     return (React.createElement(React.Fragment, null, shown ? (React.createElement("div", { className: classes.loading },

package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"ServerSideRenderedBlockContent.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAClD,OAAO,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,eAAe,CAAA;AAClD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAC3C,OAAO,EAAE,oBAAoB,EAAE,MAAM,2BAA2B,CAAA;AAChE,OAAO,WAAW,MAAM,6BAA6B,CAAA;AAErD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,WAAW,EAAE,OAAO;QACpB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB;QACxD,eAAe,EACb,qHAAqH;QACvH,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;QACb,aAAa,EAAE,MAAM;QACrB,SAAS,EAAE,QAAQ;KACpB;IACD,YAAY,EAAE;QACZ,KAAK,EAAE,MAAM;QACb,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB;QACnD,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACzB,aAAa,EAAE,MAAM;QACrB,SAAS,EAAE,QAAQ;KACpB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACzB,KAAK,EAAE,MAAM;QACb,UAAU,EAAE,QAAQ;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI;QAC/B,SAAS,EAAE,MAAM;KAClB;IACD,qBAAqB,EAAE;QACrB,KAAK,EAAE,MAAM;QACb,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB;QACnD,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACzB,SAAS,EAAE,QAAQ;KACpB;IACD,IAAI,EAAE;QACJ,UAAU,EAAE;YACV,OAAO,EAAE,cAAc;YACvB,SAAS,EAAE,yBAAyB;YACpC,OAAO,EAAE,KAAK;YACd,KAAK,EAAE,KAAK;YACZ,SAAS,EAAE,MAAM;SAClB;KACF;IACD,qBAAqB,EAAE;QACrB,IAAI,EAAE;YACJ,OAAO,EAAE,KAAK;SACf;QACD,KAAK,EAAE;YACL,OAAO,EAAE,MAAM;SAChB;QACD,KAAK,EAAE;YACL,OAAO,EAAE,OAAO;SACjB;KACF;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,QAAQ,CAAC,EAAE,QAAQ,EAAiC;IAC3D,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE;QAC5B,QAAQ;QACR,QAAQ,CACL,CACP,CAAA;AACH,CAAC;AAED,8DAA8D;AAC9D,MAAM,cAAc,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC5D,4EAA4E;IAC5E,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACzC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,MAAM,GAAG,KAAK,CAAA;QAClB,MAAM,OAAO,GAAG,UAAU,CAAC,GAAG,EAAE;YAC9B,IAAI,CAAC,MAAM,EAAE;gBACX,QAAQ,CAAC,IAAI,CAAC,CAAA;aACf;QACH,CAAC,EAAE,GAAG,CAAC,CAAA;QACP,OAAO,GAAG,EAAE;YACV,YAAY,CAAC,OAAO,CAAC,CAAA;YACrB,MAAM,GAAG,IAAI,CAAA;QACf,CAAC,CAAA;IACH,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACrC,8DAA8D;IAC9D,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,GAAG,SAAS,CAAM,KAAK,EAAE,CAAC,CAAC,CAAA;IAC3D,MAAM,MAAM,GAAG,aAAa,IAAI,WAAW,CAAA;IAC3C,OAAO,CACL,0CACG,KAAK,CAAC,CAAC,CAAC,CACP,6BAAK,SAAS,EAAE,OAAO,CAAC,OAAO;QAC7B,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,EAAE,OAAO,EAAC,OAAO,IACjD,MAAM,CAAC,CAAC,CAAC,GAAG,MAAM,EAAE,CAAC,CAAC,CAAC,SAAS,CACtB,CACT,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,YAAY,CAAC,EACpB,cAAc,GAGf;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,OAAO,KAAK,CAAC,cAAc,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,CAC5C,6BAAK,SAAS,EAAE,OAAO,CAAC,qBAAqB,IAAG,cAAc,CAAO,CACtE,CAAC,CAAC,CAAC,CACF,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,SAAS,EAAE,OAAO,CAAC,YAAY,IACxD,cAAc,CACJ,CACd,CAAA;AACH,CAAC;AAED,SAAS,UAAU,CAAC,EAClB,KAAK,EACL,MAAM,EACN,aAAa,GAKd;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,UAAU,EAAE,KAAK,EAAE,EAAE,MAAM,EAAE,aAAa,EAAE;QACjE,MAAM,CAAC,CAAC,CAAC,CACR,oBAAC,MAAM,mBACO,eAAe,EAC3B,OAAO,EAAE,MAAM,EACf,SAAS,EAAE,oBAAC,WAAW,OAAG,aAGnB,CACV,CAAC,CAAC,CAAC,IAAI;QACR,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,EAAC,OAAO,EAAC,OAAO,EAAC,OAAO,EAAC,QAAQ,IACvD,GAAG,KAAK,EAAE,CACA,CACT,CACP,CAAA;AACH,CAAC;AAED,MAAM,8BAA8B,GAAG,QAAQ,CAC7C,CAAC,EACC,KAAK,GAIN,EAAE,EAAE;IACH,IAAI,KAAK,CAAC,KAAK,EAAE;QACf,OAAO,CACL,oBAAC,QAAQ;YACP,oBAAC,UAAU,IACT,KAAK,EAAE,KAAK,CAAC,KAAK,EAClB,MAAM,EAAE,KAAK,CAAC,MAAM,EACpB,aAAa,EAAE,oBAAoB,CAAC,KAAK,CAAC,CAAC,YAAY,CAAC,MAAM,GAC9D,CACO,CACZ,CAAA;KACF;IACD,IAAI,KAAK,CAAC,OAAO,EAAE;QACjB,OAAO,CACL,oBAAC,QAAQ;YACP,oBAAC,YAAY,IAAC,cAAc,EAAE,KAAK,CAAC,OAAO,GAAI,CACtC,CACZ,CAAA;KACF;IACD,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE;QACjB,OAAO,CACL,oBAAC,QAAQ;YACP,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CACvB,CACZ,CAAA;KACF;IACD,OAAO,KAAK,CAAC,YAAY,CAAA;AAC3B,CAAC,CACF,CAAA;AAED,eAAe,8BAA8B,CAAA"}

package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts ADDED Viewed

@@ -0,0 +1,9 @@
+/// <reference types="react" />
+import { LinearGenomeViewModel } from '..';
+declare type LGV = LinearGenomeViewModel;
+declare function SequenceDialog({ model, handleClose, }: {
+    model: LGV;
+    handleClose: () => void;
+}): JSX.Element;
+declare const _default: typeof SequenceDialog;
+export default _default;

package/esm/LinearGenomeView/components/{SequenceDialog.js → GetSequenceDialog.js} RENAMED Viewed

@@ -12,9 +12,6 @@ import { ContentCopy as ContentCopyIcon } from '@jbrowse/core/ui/Icons';
 import CloseIcon from '@mui/icons-material/Close';
 import GetAppIcon from '@mui/icons-material/GetApp';
 const useStyles = makeStyles()(theme => ({
-    loadingMessage: {
-        padding: theme.spacing(5),
-    },
     closeButton: {
         position: 'absolute',
         right: theme.spacing(1),
@@ -106,10 +103,10 @@ function SequenceDialog({ model, handleClose, }) {
         };
     }, [model, session, regionsSelected, setSequence]);
     const sequenceTooLarge = sequence ? sequence.length > 1000000 : false;
-    return (React.createElement(Dialog, { "data-testid": "sequence-dialog", maxWidth: "xl", open: true, onClose: handleClose, "aria-labelledby": "alert-dialog-title", "aria-describedby": "alert-dialog-description" },
-        React.createElement(DialogTitle, { id: "alert-dialog-title" },
+    return (React.createElement(Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
+        React.createElement(DialogTitle, null,
             "Reference sequence",
-            handleClose ? (React.createElement(IconButton, { "data-testid": "close-seqDialog", className: classes.closeButton, onClick: () => {
+            handleClose ? (React.createElement(IconButton, { className: classes.closeButton, onClick: () => {
                     handleClose();
                     model.setOffsets(undefined, undefined);
                 }, size: "large" },
@@ -141,7 +138,7 @@ function SequenceDialog({ model, handleClose, }) {
                     });
                     saveAs(seqFastaFile, 'jbrowse_ref_seq.fa');
                 }, disabled: loading || !!error, color: "primary", startIcon: React.createElement(GetAppIcon, null) }, "Download FASTA"),
-            React.createElement(Button, { onClick: handleClose, color: "primary", autoFocus: true }, "Close"))));
+            React.createElement(Button, { onClick: handleClose, variant: "contained" }, "Close"))));
 }
 export default observer(SequenceDialog);
-//# sourceMappingURL=SequenceDialog.js.map
+//# sourceMappingURL=GetSequenceDialog.js.map

package/esm/LinearGenomeView/components/GetSequenceDialog.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"GetSequenceDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/GetSequenceDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAC3D,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EACL,MAAM,EACN,gBAAgB,EAChB,SAAS,EACT,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,OAAO,EACP,UAAU,EACV,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AACnC,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,IAAI,MAAM,mBAAmB,CAAA;AACpC,OAAO,EAAE,UAAU,EAAmB,MAAM,oBAAoB,CAAA;AAChE,OAAO,EAAE,cAAc,EAAE,MAAM,uCAAuC,CAAA;AAEtE,QAAQ;AACR,OAAO,EAAE,WAAW,IAAI,eAAe,EAAE,MAAM,wBAAwB,CAAA;AACvE,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,UAAU,MAAM,4BAA4B,CAAA;AAKnD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IACD,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,YAAY,EAAE;QACZ,UAAU,EAAE,aAAa;KAC1B;CACF,CAAC,CAAC,CAAA;AAIH;;GAEG;AACH,KAAK,UAAU,aAAa,CAC1B,KAAU,EACV,OAAiB,EACjB,MAAoB;IAEpB,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,UAAU,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAEzC,IAAI,CAAC,UAAU,IAAI,CAAC,WAAW,EAAE;QAC/B,MAAM,IAAI,KAAK,CAAC,sCAAsC,CAAC,CAAA;KACxD;IAED,IAAI,UAAU,CAAC,YAAY,KAAK,WAAW,CAAC,YAAY,EAAE;QACxD,MAAM,IAAI,KAAK,CAAC,sDAAsD,CAAC,CAAA;KACxE;IACD,MAAM,EAAE,UAAU,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IAC/C,MAAM,YAAY,GAAG,UAAU,CAAC,YAAY,IAAI,WAAW,CAAC,YAAY,IAAI,EAAE,CAAA;IAC9E,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,YAAY,CAAC,CAAA;KACtD;IACD,MAAM,aAAa,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC,CAAA;IAEhE,MAAM,SAAS,GAAG,aAAa,CAAA;IAC/B,OAAO,UAAU,CAAC,IAAI,CAAC,SAAS,EAAE,iBAAiB,EAAE;QACnD,aAAa;QACb,OAAO;QACP,SAAS;QACT,MAAM;KACP,CAAuB,CAAA;AAC1B,CAAC;AAED,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAU,CAAA;IAClD,MAAM,OAAO,GAAG,OAAO,CAAC,QAAQ,KAAK,SAAS,CAAC,CAAA;IAC/C,MAAM,EAAE,UAAU,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAEzC,sCAAsC;IACtC,0EAA0E;IAC1E,yEAAyE;IACzE,MAAM,eAAe,GAAG,OAAO,CAC7B,GAAG,EAAE,CAAC,KAAK,CAAC,kBAAkB,CAAC,UAAU,EAAE,WAAW,CAAC,EACvD,CAAC,KAAK,EAAE,UAAU,EAAE,WAAW,CAAC,CACjC,CAAA;IAED,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,MAAM,GAAG,IAAI,CAAA;QACjB,MAAM,UAAU,GAAG,IAAI,eAAe,EAAE,CAEvC;QAAA,CAAC,KAAK,IAAI,EAAE;YACX,IAAI;gBACF,IAAI,eAAe,CAAC,MAAM,GAAG,CAAC,EAAE;oBAC9B,MAAM,MAAM,GAAG,MAAM,aAAa,CAChC,KAAK,EACL,eAAe,EACf,UAAU,CAAC,MAAM,CAClB,CAAA;oBACD,IAAI,MAAM,EAAE;wBACV,WAAW,CACT,cAAc,CACZ,MAAM;6BACH,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;6BAChB,GAAG,CAAC,KAAK,CAAC,EAAE;4BACX,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;4BACjC,MAAM,YAAY,GAAG,KAAK,CAAC,GAAG,CAAC,SAAS,CAAC,CAAA;4BACzC,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAA;4BACzC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;4BACjC,MAAM,cAAc,GAAG,GAAG,YAAY,IAAI,UAAU,IAAI,QAAQ,EAAE,CAAA;4BAClE,IAAI,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,MAAM,MAAK,QAAQ,GAAG,UAAU,GAAG,CAAC,EAAE;gCAClD,MAAM,IAAI,KAAK,CACb,GAAG,cAAc,aAAa,QAAQ,CAAC,MAAM,CAAC,cAAc,EAAE,oCAAoC,CAChG,QAAQ,GAAG,UAAU,CACtB,CAAC,cAAc,EAAE,EAAE,CACrB,CAAA;6BACF;4BACD,OAAO,EAAE,MAAM,EAAE,cAAc,EAAE,GAAG,EAAE,QAAQ,EAAE,CAAA;wBAClD,CAAC,CAAC,CACL,CACF,CAAA;qBACF;iBACF;qBAAM;oBACL,MAAM,IAAI,KAAK,CAAC,kCAAkC,CAAC,CAAA;iBACpD;aACF;YAAC,OAAO,CAAC,EAAE;gBACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,IAAI,MAAM,EAAE;oBACV,QAAQ,CAAC,CAAC,CAAC,CAAA;iBACZ;aACF;QACH,CAAC,CAAC,EAAE,CAAA;QAEJ,OAAO,GAAG,EAAE;YACV,UAAU,CAAC,KAAK,EAAE,CAAA;YAClB,MAAM,GAAG,KAAK,CAAA;QAChB,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,WAAW,CAAC,CAAC,CAAA;IAElD,MAAM,gBAAgB,GAAG,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,GAAG,OAAS,CAAC,CAAC,CAAC,KAAK,CAAA;IAEvE,OAAO,CACL,oBAAC,MAAM,IAAC,QAAQ,EAAC,IAAI,EAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QAC7C,oBAAC,WAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;oBACb,KAAK,CAAC,UAAU,CAAC,SAAS,EAAE,SAAS,CAAC,CAAA;gBACxC,CAAC,EACD,IAAI,EAAC,OAAO;gBAEZ,oBAAC,SAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,oBAAC,OAAO,OAAG;QAEX,oBAAC,aAAa;YACX,KAAK,CAAC,CAAC,CAAC,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,IAAE,GAAG,KAAK,EAAE,CAAc,CAAC,CAAC,CAAC,IAAI;YAClE,OAAO,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CACnB,oBAAC,SAAS;;gBAER,oBAAC,gBAAgB,IACf,KAAK,EAAE;wBACL,UAAU,EAAE,EAAE;qBACf,EACD,IAAI,EAAE,EAAE,EACR,aAAa,SACb,CACQ,CACb,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,SAAS,mBACI,qBAAqB,EACjC,OAAO,EAAC,UAAU,EAClB,SAAS,QACT,OAAO,EAAE,CAAC,EACV,QAAQ,EAAE,gBAAgB,EAC1B,SAAS,EAAE,OAAO,CAAC,aAAa,EAChC,SAAS,QACT,KAAK,EACH,gBAAgB;oBACd,CAAC,CAAC,wEAAwE;oBAC1E,CAAC,CAAC,QAAQ,EAEd,UAAU,EAAE;oBACV,QAAQ,EAAE,IAAI;oBACd,OAAO,EAAE;wBACP,KAAK,EAAE,OAAO,CAAC,YAAY;qBAC5B;iBACF,GACD,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package/esm/LinearGenomeView/components/{VerticalGuides.d.ts → Gridlines.d.ts} RENAMED Viewed

File without changes

package/esm/LinearGenomeView/components/{VerticalGuides.js → Gridlines.js} RENAMED Viewed

@@ -68,4 +68,4 @@ function VerticalGuides({ model }) {
             React.createElement(RenderedVerticalGuides, { model: model }))));
 }
 export default observer(VerticalGuides);
-//# sourceMappingURL=VerticalGuides.js.map
+//# sourceMappingURL=Gridlines.js.map

package/esm/LinearGenomeView/components/Gridlines.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"Gridlines.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Gridlines.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,YAAY,EACZ,WAAW,EACX,uBAAuB,GACxB,MAAM,+BAA+B,CAAA;AACtC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EACL,YAAY,IAAI,qBAAqB,EACrC,WAAW,IAAI,oBAAoB,EACnC,uBAAuB,IAAI,gCAAgC,GAC5D,MAAM,0CAA0C,CAAA;AAEjD,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AAInC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,2BAA2B,EAAE;QAC3B,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;QACb,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;KACtB;IACD,uBAAuB,EAAE;QACvB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;QACrB,OAAO,EAAE,MAAM;KAChB;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,CAAC;KACT;IACD,SAAS,EAAE;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,SAAS;KACzC;IACD,SAAS,EAAE;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,OAAO;KAClC;CACF,CAAC,CAAC,CAAA;AACH,MAAM,sBAAsB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACpE,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,OAAO,CACL,0CACG,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACvC,IAAI,KAAK,YAAY,YAAY,EAAE;YACjC,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,CAAC,KAAK,EAAE,KAAK,CAAC,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAA;YAC9D,OAAO,CACL,oBAAC,qBAAqB,IAAC,GAAG,EAAE,GAAG,KAAK,CAAC,GAAG,IAAI,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,IAC9D,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;gBAChB,MAAM,CAAC,GACL,CAAC,KAAK,CAAC,QAAQ;oBACb,CAAC,CAAC,KAAK,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI;oBACvB,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,GAAG,KAAK,CAAC,OAAO,CAAA;gBAC9C,OAAO,CACL,6BACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,SAAS,EAAE,EAAE,CACX,OAAO,CAAC,IAAI,EACZ,IAAI,CAAC,IAAI,KAAK,OAAO,IAAI,IAAI,CAAC,IAAI,KAAK,cAAc;wBACnD,CAAC,CAAC,OAAO,CAAC,SAAS;wBACnB,CAAC,CAAC,OAAO,CAAC,SAAS,CACtB,EACD,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,GAClB,CACH,CAAA;YACH,CAAC,CAAC,CACoB,CACzB,CAAA;SACF;QACD,IAAI,KAAK,YAAY,WAAW,EAAE;YAChC,OAAO,oBAAC,oBAAoB,IAAC,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,KAAK,EAAE,KAAK,CAAC,OAAO,GAAI,CAAA;SACtE;QACD,IAAI,KAAK,YAAY,uBAAuB,EAAE;YAC5C,OAAO,CACL,oBAAC,gCAAgC,IAC/B,GAAG,EAAE,KAAK,CAAC,GAAG,EACd,KAAK,EAAE,KAAK,CAAC,OAAO,EACpB,QAAQ,EAAE,KAAK,CAAC,OAAO,KAAK,UAAU,GACtC,CACH,CAAA;SACF;QACD,OAAO,IAAI,CAAA;IACb,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,SAAS,cAAc,CAAC,EAAE,KAAK,EAAkB;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,iEAAiE;IACjE,MAAM,UAAU,GAAG,KAAK,CAAC,YAAY,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAA;IAC/D,OAAO,CACL,6BACE,SAAS,EAAE,OAAO,CAAC,2BAA2B,EAC9C,KAAK,EAAE;YACL,SAAS,EACP,KAAK,CAAC,WAAW,KAAK,CAAC,CAAC,CAAC,CAAC,UAAU,KAAK,CAAC,WAAW,GAAG,CAAC,CAAC,CAAC,SAAS;SACvE;QAED,6BACE,SAAS,EAAE,OAAO,CAAC,uBAAuB,EAC1C,KAAK,EAAE;gBACL,IAAI,EAAE,UAAU;gBAChB,KAAK,EAAE,KAAK,CAAC,YAAY,CAAC,YAAY;aACvC;YAED,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC,CACF,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,cAAc,CAAC,CAAA"}

package/esm/LinearGenomeView/components/ImportForm.js CHANGED Viewed

@@ -114,6 +114,7 @@ const ImportForm = observer(({ model }) => {
                         React.createElement(AssemblySelector, { onChange: val => {
                                 setImportError('');
                                 setSelectedAsm(val);
+                                setValue('');
                             }, session: session, selected: selectedAsm, InputProps: { style: { height } } })),
                     React.createElement(Grid, { item: true }, selectedAsm ? (err ? (React.createElement(CloseIcon, { style: { color: 'red' } })) : value ? (React.createElement(RefNameAutocomplete, { fetchResults: queryString => fetchResults({
                             queryString,

package/esm/LinearGenomeView/components/ImportForm.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/LinearGenomeView/components/LinearGenomeView.js CHANGED Viewed

@@ -8,7 +8,7 @@ import TrackContainer from './TrackContainer';
 import TracksContainer from './TracksContainer';
 import ImportForm from './ImportForm';
 import MiniControls from './MiniControls';
-import SequenceDialog from './SequenceDialog';
+import GetSequenceDialog from './GetSequenceDialog';
 import SearchResultsDialog from './SearchResultsDialog';
 const useStyles = makeStyles()(theme => ({
     note: {
@@ -47,12 +47,8 @@ const LinearGenomeView = observer(({ model }) => {
         return React.createElement(ImportForm, { model: model });
     }
     return (React.createElement("div", { style: { position: 'relative' } },
-        model.seqDialogDisplayed ? (React.createElement(SequenceDialog, { model: model, handleClose: () => {
-                model.setSequenceDialogOpen(false);
-            } })) : null,
-        model.isSearchDialogDisplayed ? (React.createElement(SearchResultsDialog, { model: model, handleClose: () => {
-                model.setSearchResults(undefined, undefined);
-            } })) : null,
+        model.seqDialogDisplayed ? (React.createElement(GetSequenceDialog, { model: model, handleClose: () => model.setGetSequenceDialogOpen(false) })) : null,
+        model.isSearchDialogDisplayed ? (React.createElement(SearchResultsDialog, { model: model, handleClose: () => model.setSearchResults(undefined, undefined) })) : null,
         !hideHeader ? (React.createElement(Header, { model: model })) : (React.createElement("div", { style: {
                 position: 'absolute',
                 right: 0,

package/esm/LinearGenomeView/components/LinearGenomeView.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearGenomeView/components/OverviewRubberBand.d.ts CHANGED Viewed

@@ -1,5 +1,4 @@
 import React from 'react';
-import ReactPropTypes from 'prop-types';
 import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
 import { LinearGenomeViewModel } from '..';
 declare type LGV = LinearGenomeViewModel;
@@ -8,15 +7,5 @@ declare function OverviewRubberBand({ model, overview, ControlComponent, }: {
     overview: Base1DViewModel;
     ControlComponent?: React.ReactElement;
 }): JSX.Element;
-declare namespace OverviewRubberBand {
-    var propTypes: {
-        model: ReactPropTypes.Validator<any>;
-        overview: ReactPropTypes.Validator<any>;
-        ControlComponent: ReactPropTypes.Requireable<ReactPropTypes.ReactNodeLike>;
-    };
-    var defaultProps: {
-        ControlComponent: JSX.Element;
-    };
-}
 declare const _default: typeof OverviewRubberBand;
 export default _default;

package/esm/LinearGenomeView/components/OverviewRubberBand.js CHANGED Viewed

@@ -2,11 +2,9 @@ import React, { useRef, useEffect, useState } from 'react';
 import { Popover, Tooltip, Typography, alpha } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
 import { getSession, stringify } from '@jbrowse/core/util';
-import { observer, PropTypes as MobxPropTypes } from 'mobx-react';
-import ReactPropTypes from 'prop-types';
+import { observer } from 'mobx-react';
 import { HEADER_OVERVIEW_HEIGHT } from '..';
 const useStyles = makeStyles()(theme => {
-    // @ts-ignore
     const { tertiary, primary } = theme.palette;
     const background = tertiary
         ? alpha(tertiary.main, 0.7)
@@ -78,19 +76,24 @@ function OverviewRubberBand({ model, overview, ControlComponent = React.createEl
             }
         }
         function globalMouseUp() {
-            if (controlsRef.current &&
-                startX !== undefined &&
-                currentX !== undefined) {
+            // click and drag
+            if (startX !== undefined && currentX !== undefined) {
                 if (Math.abs(currentX - startX) > 3) {
-                    model.zoomToDisplayedRegions(overview.pxToBp(startX - cytobandOffset), overview.pxToBp(currentX - cytobandOffset));
+                    const left = Math.min(startX, currentX);
+                    const right = Math.max(startX, currentX);
+                    model.moveTo(overview.pxToBp(left - cytobandOffset), overview.pxToBp(right - cytobandOffset));
                 }
             }
-            /* handling clicking and centering at a specific Bp */
-            if (controlsRef.current &&
-                startX !== undefined &&
-                currentX === undefined) {
-                const clickedAt = overview.pxToBp(startX - cytobandOffset);
-                model.centerAt(Math.round(clickedAt.coord), clickedAt.refName, clickedAt.index);
+            // just a click
+            if (startX !== undefined && currentX === undefined) {
+                const click = overview.pxToBp(startX - cytobandOffset);
+                if (!click.refName) {
+                    getSession(model).notify('unknown position clicked');
+                    console.error('unknown position clicked', click);
+                }
+                else {
+                    model.centerAt(Math.round(click.coord), click.refName, click.index);
+                }
             }
             setStartX(undefined);
             setCurrentX(undefined);
@@ -182,13 +185,5 @@ function OverviewRubberBand({ model, overview, ControlComponent = React.createEl
             } }),
         React.createElement("div", { "data-testid": "rubberBand_controls", className: classes.rubberBandControl, role: "presentation", ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
 }
-OverviewRubberBand.propTypes = {
-    model: MobxPropTypes.objectOrObservableObject.isRequired,
-    overview: MobxPropTypes.objectOrObservableObject.isRequired,
-    ControlComponent: ReactPropTypes.node,
-};
-OverviewRubberBand.defaultProps = {
-    ControlComponent: React.createElement("div", null),
-};
 export default observer(OverviewRubberBand);
 //# sourceMappingURL=OverviewRubberBand.js.map

package/esm/LinearGenomeView/components/OverviewRubberBand.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"OverviewRubberBand.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/OverviewRubberBand.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAC1D,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACnE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAA;AAC1D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAyB,sBAAsB,EAAE,MAAM,IAAI,CAAA;AAIlE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;IAC3C,MAAM,UAAU,GAAG,QAAQ;QACzB,CAAC,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC;QAC3B,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAA;IAC5B,OAAO;QACL,UAAU,EAAE;YACV,MAAM,EAAE,MAAM;YACd,UAAU;YACV,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,EAAE;YACV,SAAS,EAAE,QAAQ;YACnB,QAAQ,EAAE,QAAQ;SACnB;QACD,iBAAiB,EAAE;YACjB,MAAM,EAAE,WAAW;YACnB,KAAK,EAAE,MAAM;YACb,SAAS,EAAE,CAAC;SACb;QACD,cAAc,EAAE;YACd,KAAK,EAAE,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,YAAY;SAC/D;QACD,OAAO,EAAE;YACP,WAAW,EAAE,MAAM;YACnB,MAAM,EAAE,WAAW;SACpB;QACD,KAAK,EAAE;YACL,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;YAC7B,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC/B;QACD,KAAK,EAAE;YACL,aAAa,EAAE,MAAM;YACrB,MAAM,EAAE,MAAM;YACd,KAAK,EAAE,CAAC;YACR,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,EAAE;SACX;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,YAAY,GAAG,QAAQ,CAC3B,CAAC,EACC,KAAK,EACL,IAAI,EACJ,MAAM,EACN,QAAQ,GAMT,EAAE,EAAE;;IACH,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAChC,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IAE7C,MAAM,EAAE,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,GAAG,cAAc,CAAC,CAAA;IACnD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,EAAE,CAAC,YAAY,CAAC,CAAA;IACrD,MAAM,QAAQ,GAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,SAAS,0CAAE,IAAI,CACxC,CAAC,CAAC,EAAE,CACF,EAAE,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC;QACzB,EAAE,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC;QACvB,EAAE,CAAC,OAAO,KAAK,QAAQ,CAAC,mBAAmB,CAAC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAChE,CAAA;IAED,OAAO,CACL,oBAAC,OAAO,IACN,IAAI,EAAE,IAAI,EACV,SAAS,EAAC,KAAK,EACf,KAAK,EAAE,CAAC,SAAS,CAAC,EAAE,CAAC,EAAE,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,EACvD,KAAK;QAEL,6BACE,SAAS,EAAE,OAAO,CAAC,KAAK,EACxB,KAAK,EAAE;gBACL,IAAI,EAAE,MAAM;aACb,GACD,CACM,CACX,CAAA;AACH,CAAC,CACF,CAAA;AAED,SAAS,kBAAkB,CAAC,EAC1B,KAAK,EACL,QAAQ,EACR,gBAAgB,GAAG,gCAAO,GAK3B;IACC,MAAM,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAChC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAU,CAAA;IAClD,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,WAAW,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IAChD,MAAM,aAAa,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IAClD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,aAAa,GAAG,MAAM,KAAK,SAAS,CAAA;IAE1C,SAAS,CAAC,GAAG,EAAE;QACb,SAAS,eAAe,CAAC,KAAiB;YACxC,MAAM,GAAG,GAAG,WAAW,CAAC,OAAO,CAAA;YAC/B,IAAI,GAAG,IAAI,aAAa,EAAE;gBACxB,MAAM,SAAS,GAAG,KAAK,CAAC,OAAO,GAAG,GAAG,CAAC,qBAAqB,EAAE,CAAC,IAAI,CAAA;gBAClE,WAAW,CAAC,SAAS,CAAC,CAAA;aACvB;QACH,CAAC;QAED,SAAS,aAAa;YACpB,iBAAiB;YACjB,IAAI,MAAM,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;gBAClD,IAAI,IAAI,CAAC,GAAG,CAAC,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,EAAE;oBACnC,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAA;oBACvC,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAA;oBACxC,KAAK,CAAC,MAAM,CACV,QAAQ,CAAC,MAAM,CAAC,IAAI,GAAG,cAAc,CAAC,EACtC,QAAQ,CAAC,MAAM,CAAC,KAAK,GAAG,cAAc,CAAC,CACxC,CAAA;iBACF;aACF;YAED,eAAe;YACf,IAAI,MAAM,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;gBAClD,MAAM,KAAK,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,GAAG,cAAc,CAAC,CAAA;gBACtD,IAAI,CAAC,KAAK,CAAC,OAAO,EAAE;oBAClB,UAAU,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,0BAA0B,CAAC,CAAA;oBACpD,OAAO,CAAC,KAAK,CAAC,0BAA0B,EAAE,KAAK,CAAC,CAAA;iBACjD;qBAAM;oBACL,KAAK,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,KAAK,CAAC,KAAK,CAAC,CAAA;iBACpE;aACF;YACD,SAAS,CAAC,SAAS,CAAC,CAAA;YACpB,WAAW,CAAC,SAAS,CAAC,CAAA;YAEtB,IAAI,MAAM,KAAK,SAAS,EAAE;gBACxB,SAAS,CAAC,SAAS,CAAC,CAAA;aACrB;QACH,CAAC;QAED,SAAS,aAAa,CAAC,KAAoB;YACzC,IAAI,KAAK,CAAC,GAAG,KAAK,QAAQ,EAAE;gBAC1B,SAAS,CAAC,SAAS,CAAC,CAAA;gBACpB,WAAW,CAAC,SAAS,CAAC,CAAA;aACvB;QACH,CAAC;QAED,IAAI,aAAa,EAAE;YACjB,MAAM,CAAC,gBAAgB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;YAC3D,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YACvD,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YACvD,OAAO,GAAG,EAAE;gBACV,MAAM,CAAC,mBAAmB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;gBAC9D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;gBAC1D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YAC5D,CAAC,CAAA;SACF;QACD,OAAO,GAAG,EAAE,GAAE,CAAC,CAAA;IACjB,CAAC,EAAE,CAAC,aAAa,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,cAAc,CAAC,CAAC,CAAA;IAEtE,SAAS,SAAS,CAAC,KAAuC;QACxD,KAAK,CAAC,cAAc,EAAE,CAAA;QACtB,KAAK,CAAC,eAAe,EAAE,CAAA;QACvB,IAAI,WAAW,CAAC,OAAO,EAAE;YACvB,SAAS,CACP,KAAK,CAAC,OAAO,GAAG,WAAW,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAC,IAAI,CACjE,CAAA;SACF;IACH,CAAC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package/esm/LinearGenomeView/components/OverviewScaleBar.js CHANGED Viewed

@@ -65,7 +65,6 @@ const Polygon = observer(({ model, overview, useOffset = true, }) => {
     const multiplier = Number(useOffset);
     const { interRegionPaddingWidth, offsetPx, dynamicBlocks, cytobandOffset } = model;
     const { contentBlocks, totalWidthPxWithoutBorders } = dynamicBlocks;
-    // @ts-ignore
     const { tertiary, primary } = theme.palette;
     const polygonColor = tertiary ? tertiary.light : primary.light;
     if (!contentBlocks.length) {
@@ -229,7 +228,6 @@ const ScaleBar = observer(({ model, scale, overview, }) => {
     const { dynamicBlocks, showCytobands, cytobandOffset } = model;
     const visibleRegions = dynamicBlocks.contentBlocks;
     const overviewVisibleRegions = overview.dynamicBlocks;
-    // @ts-ignore
     const { tertiary, primary } = theme.palette;
     const scaleBarColor = tertiary ? tertiary.light : primary.light;
     if (!visibleRegions.length) {

package/esm/LinearGenomeView/components/OverviewScaleBar.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/LinearGenomeView/components/RubberBand.js CHANGED Viewed

@@ -5,7 +5,6 @@ import { makeStyles } from 'tss-react/mui';
 import { stringify } from '@jbrowse/core/util';
 import { Menu } from '@jbrowse/core/ui';
 const useStyles = makeStyles()(theme => {
-    // @ts-ignore
     const { primary, tertiary } = theme.palette;
     const background = tertiary
         ? alpha(tertiary.main, 0.7)
@@ -71,7 +70,6 @@ function RubberBand({ model, ControlComponent = React.createElement("div", null)
             }
             let leftPx = startX;
             let rightPx = offsetX;
-            // handles clicking and draging to the left
             if (rightPx < leftPx) {
                 ;
                 [leftPx, rightPx] = [rightPx, leftPx];

package/esm/LinearGenomeView/components/RubberBand.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/LinearGenomeView/components/SearchBox.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearGenomeView/components/{SequenceDialog.d.ts → SequenceSearchDialog.d.ts} RENAMED Viewed

File without changes

package/esm/LinearGenomeView/components/SequenceSearchDialog.js ADDED Viewed

@@ -0,0 +1,76 @@
+import React, { useState } from 'react';
+import { Button, Checkbox, Dialog, DialogActions, DialogContent, DialogTitle, Divider, FormGroup, FormControlLabel, IconButton, TextField, Typography, } from '@mui/material';
+import { getSnapshot } from 'mobx-state-tree';
+import { makeStyles } from 'tss-react/mui';
+import { observer } from 'mobx-react';
+import { getSession } from '@jbrowse/core/util';
+// icons
+import CloseIcon from '@mui/icons-material/Close';
+const useStyles = makeStyles()(theme => ({
+    closeButton: {
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+    dialogContent: {
+        width: '40em',
+    },
+}));
+function SequenceDialog({ model, handleClose, }) {
+    const { classes } = useStyles();
+    const [value, setValue] = useState('');
+    const [searchForward, setSearchForward] = useState(true);
+    const [searchReverse, setSearchReverse] = useState(true);
+    const [caseInsensitive, setCaseInsensitive] = useState(true);
+    let error;
+    try {
+        new RegExp(value);
+    }
+    catch (e) {
+        error = e;
+    }
+    return (React.createElement(Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
+        React.createElement(DialogTitle, null,
+            "Sequence search",
+            handleClose ? (React.createElement(IconButton, { className: classes.closeButton, onClick: () => handleClose(), size: "large" },
+                React.createElement(CloseIcon, null))) : null),
+        React.createElement(Divider, null),
+        React.createElement(DialogContent, { className: classes.dialogContent },
+            React.createElement(Typography, null, "Supply a sequence to search for. A track will be created with the resulting matches once submitted. You can also supply regex style expressions e.g. AACT(C|T)."),
+            React.createElement(TextField, { value: value, onChange: e => setValue(e.target.value), helperText: "Sequence search pattern" }),
+            React.createElement(FormGroup, null,
+                React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: searchForward, onChange: event => setSearchForward(event.target.checked) }), label: "Search forward strand" }),
+                React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: searchReverse, onChange: event => setSearchReverse(event.target.checked) }), label: "Search reverse strand" }),
+                React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: caseInsensitive, onChange: event => setCaseInsensitive(event.target.checked) }), label: "Case insensitive" })),
+            error ? React.createElement(Typography, { color: "error" }, `${error}`) : null),
+        React.createElement(DialogActions, null,
+            React.createElement(Button, { onClick: () => {
+                    var _a;
+                    if (value) {
+                        const trackId = `sequence_search_${+Date.now()}`;
+                        const session = getSession(model);
+                        const { assemblyManager } = session;
+                        const assemblyName = model.assemblyNames[0];
+                        session.addTrackConf({
+                            trackId,
+                            name: `Sequence search ${value}`,
+                            assemblyNames: [assemblyName],
+                            type: 'FeatureTrack',
+                            adapter: {
+                                type: 'SequenceSearchAdapter',
+                                search: value,
+                                searchForward,
+                                searchReverse,
+                                caseInsensitive,
+                                sequenceAdapter: getSnapshot((_a = assemblyManager.get(assemblyName)) === null || _a === void 0 ? void 0 : _a.configuration.sequence.adapter),
+                            },
+                        });
+                        model.toggleTrack(trackId);
+                    }
+                    handleClose();
+                }, variant: "contained", color: "primary" }, "Submit"),
+            React.createElement(Button, { onClick: () => handleClose(), variant: "contained", color: "secondary" }, "Close"))));
+}
+export default observer(SequenceDialog);
+//# sourceMappingURL=SequenceSearchDialog.js.map

package/esm/LinearGenomeView/components/SequenceSearchDialog.js.map ADDED Viewed

@@ -0,0 +1 @@

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package/esm/LinearGenomeView/components/TrackContainer.d.ts CHANGED Viewed

@@ -1,8 +1,9 @@
 /// <reference types="react" />
 import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
 import { LinearGenomeViewModel } from '..';
+declare type LGV = LinearGenomeViewModel;
 declare function TrackContainer({ model, track, }: {
-    model: LinearGenomeViewModel;
+    model: LGV;
     track: BaseTrackModel;
 }): JSX.Element;
 declare const _default: typeof TrackContainer;