@jbrowse/plugin-linear-genome-view 2.0.0 → 2.1.2

package/dist/LinearGenomeView/components/ImportForm.js

@@ -22,76 +22,24 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-var __generator = (this && this.__generator) || function (thisArg, body) {
-    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
-    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
-    function verb(n) { return function (v) { return step([n, v]); }; }
-    function step(op) {
-        if (f) throw new TypeError("Generator is already executing.");
-        while (_) try {
-            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
-            if (y = 0, t) op = [op[0] & 2, t.value];
-            switch (op[0]) {
-                case 0: case 1: t = op; break;
-                case 4: _.label++; return { value: op[1], done: false };
-                case 5: _.label++; y = op[1]; op = [0]; continue;
-                case 7: op = _.ops.pop(); _.trys.pop(); continue;
-                default:
-                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
-                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
-                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
-                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
-                    if (t[2]) _.ops.pop();
-                    _.trys.pop(); continue;
-            }
-            op = body.call(thisArg, _);
-        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
-        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
-    }
-};
-var __read = (this && this.__read) || function (o, n) {
-    var m = typeof Symbol === "function" && o[Symbol.iterator];
-    if (!m) return o;
-    var i = m.call(o), r, ar = [], e;
-    try {
-        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
-    }
-    catch (error) { e = { error: error }; }
-    finally {
-        try {
-            if (r && !r.done && (m = i["return"])) m.call(i);
-        }
-        finally { if (e) throw e.error; }
-    }
-    return ar;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importStar(require("react"));
-var mui_1 = require("tss-react/mui");
-var mobx_react_1 = require("mobx-react");
-var util_1 = require("@jbrowse/core/util");
-var material_1 = require("@mui/material");
-var ui_1 = require("@jbrowse/core/ui");
-var BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
-var Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const react_1 = __importStar(require("react"));
+const mui_1 = require("tss-react/mui");
+const mobx_react_1 = require("mobx-react");
+const util_1 = require("@jbrowse/core/util");
+const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
+const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
+const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 // locals
-var RefNameAutocomplete_1 = __importDefault(require("./RefNameAutocomplete"));
-var util_2 = require("./util");
-var __1 = require("..");
-var SearchResultsDialog = (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('./SearchResultsDialog')); }); });
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+const RefNameAutocomplete_1 = __importDefault(require("./RefNameAutocomplete"));
+const util_2 = require("./util");
+const __1 = require("..");
+const SearchResultsDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./SearchResultsDialog'))));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
     importFormContainer: {
         padding: theme.spacing(2),
     },
@@ -101,28 +49,27 @@ var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
     container: {
         padding: theme.spacing(4),
     },
-}); });
-var ImportForm = (0, mobx_react_1.observer)(function (_a) {
-    var _b;
-    var model = _a.model;
-    var classes = useStyles().classes;
-    var session = (0, util_1.getSession)(model);
-    var assemblyNames = session.assemblyNames, assemblyManager = session.assemblyManager, textSearchManager = session.textSearchManager;
-    var rankSearchResults = model.rankSearchResults, isSearchDialogDisplayed = model.isSearchDialogDisplayed, error = model.error;
-    var _c = __read((0, react_1.useState)(assemblyNames[0]), 2), selectedAsm = _c[0], setSelectedAsm = _c[1];
-    var _d = __read((0, react_1.useState)(error), 2), importError = _d[0], setImportError = _d[1];
-    var searchScope = model.searchScope(selectedAsm);
-    var assembly = assemblyManager.get(selectedAsm);
-    var assemblyError = assemblyNames.length
+}));
+const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
+    var _a;
+    const { classes } = useStyles();
+    const session = (0, util_1.getSession)(model);
+    const { assemblyNames, assemblyManager, textSearchManager } = session;
+    const { rankSearchResults, isSearchDialogDisplayed, error } = model;
+    const [selectedAsm, setSelectedAsm] = (0, react_1.useState)(assemblyNames[0]);
+    const [importError, setImportError] = (0, react_1.useState)(error);
+    const searchScope = model.searchScope(selectedAsm);
+    const assembly = assemblyManager.get(selectedAsm);
+    const assemblyError = assemblyNames.length
         ? assembly === null || assembly === void 0 ? void 0 : assembly.error
         : 'No configured assemblies';
-    var regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
-    var err = assemblyError || importError;
-    var _e = __read((0, react_1.useState)(''), 2), myVal = _e[0], setValue = _e[1];
-    var value = myVal || ((_b = regions[0]) === null || _b === void 0 ? void 0 : _b.refName);
+    const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
+    const err = assemblyError || importError;
+    const [myVal, setValue] = (0, react_1.useState)('');
+    const value = myVal || ((_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName);
     // use this instead of useState initializer because the useState initializer
     // won't update in response to an observable
-    var option = new BaseResults_1.default({
+    const option = new BaseResults_1.default({
         label: value,
     });
     // gets a string as input, or use stored option results from previous query,
@@ -130,69 +77,60 @@ var ImportForm = (0, mobx_react_1.observer)(function (_a) {
     // 1) if it has multiple results: pop a dialog
     // 2) if it's a single result navigate to it
     // 3) else assume it's a locstring and navigate to it
-    function handleSelectedRegion(input) {
-        return __awaiter(this, void 0, void 0, function () {
-            var trackId, location, _a, ref, rest, allRefs, results, e_1;
-            return __generator(this, function (_b) {
-                switch (_b.label) {
-                    case 0:
-                        if (!option) {
-                            return [2 /*return*/];
-                        }
-                        trackId = option.getTrackId();
-                        location = input || option.getLocation() || '';
-                        _a = __read(location.split(':'), 2), ref = _a[0], rest = _a[1];
-                        allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) || [];
-                        _b.label = 1;
-                    case 1:
-                        _b.trys.push([1, 5, , 6]);
-                        if (!(allRefs.includes(location) ||
-                            (allRefs.includes(ref) &&
-                                rest !== undefined &&
-                                !Number.isNaN(parseInt(rest, 10))))) return [3 /*break*/, 2];
-                        model.navToLocString(location, selectedAsm);
-                        return [3 /*break*/, 4];
-                    case 2: return [4 /*yield*/, (0, util_2.fetchResults)({
-                            queryString: input,
-                            searchType: 'exact',
-                            searchScope: searchScope,
-                            rankSearchResults: rankSearchResults,
-                            textSearchManager: textSearchManager,
-                            assembly: assembly,
-                        })];
-                    case 3:
-                        results = _b.sent();
-                        if (results.length > 1) {
-                            model.setSearchResults(results, input.toLowerCase());
-                            return [2 /*return*/];
-                        }
-                        else if (results.length === 1) {
-                            location = results[0].getLocation();
-                            trackId = results[0].getTrackId();
-                        }
-                        model.navToLocString(location, selectedAsm);
-                        if (trackId) {
-                            model.showTrack(trackId);
-                        }
-                        _b.label = 4;
-                    case 4: return [3 /*break*/, 6];
-                    case 5:
-                        e_1 = _b.sent();
-                        console.error(e_1);
-                        session.notify("".concat(e_1), 'warning');
-                        return [3 /*break*/, 6];
-                    case 6: return [2 /*return*/];
+    async function handleSelectedRegion(input) {
+        if (!option) {
+            return;
+        }
+        let trackId = option.getTrackId();
+        let location = input || option.getLocation() || '';
+        const [ref, rest] = location.split(':');
+        const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) || [];
+        try {
+            // instead of querying text-index, first:
+            // - check if input matches a refname directly
+            // - or looks like locstring
+            // then just navigate as if it were a locstring
+            if (allRefs.includes(location) ||
+                (allRefs.includes(ref) &&
+                    rest !== undefined &&
+                    !Number.isNaN(parseInt(rest, 10)))) {
+                model.navToLocString(location, selectedAsm);
+            }
+            else {
+                const results = await (0, util_2.fetchResults)({
+                    queryString: input,
+                    searchType: 'exact',
+                    searchScope,
+                    rankSearchResults,
+                    textSearchManager,
+                    assembly,
+                });
+                if (results.length > 1) {
+                    model.setSearchResults(results, input.toLowerCase());
+                    return;
+                }
+                else if (results.length === 1) {
+                    location = results[0].getLocation();
+                    trackId = results[0].getTrackId();
                 }
-            });
-        });
+                model.navToLocString(location, selectedAsm);
+                if (trackId) {
+                    model.showTrack(trackId);
+                }
+            }
+        }
+        catch (e) {
+            console.error(e);
+            session.notify(`${e}`, 'warning');
+        }
     }
-    var height = __1.WIDGET_HEIGHT + 5;
+    const height = __1.WIDGET_HEIGHT + 5;
     // implementation notes:
     // having this wrapped in a form allows intuitive use of enter key to submit
     return (react_1.default.createElement("div", { className: classes.container },
         err ? react_1.default.createElement(ui_1.ErrorMessage, { error: err }) : null,
         react_1.default.createElement(material_1.Container, { className: classes.importFormContainer },
-            react_1.default.createElement("form", { onSubmit: function (event) {
+            react_1.default.createElement("form", { onSubmit: event => {
                     event.preventDefault();
                     model.setError(undefined);
                     if (value) {
@@ -201,33 +139,32 @@ var ImportForm = (0, mobx_react_1.observer)(function (_a) {
                 } },
                 react_1.default.createElement(material_1.Grid, { container: true, spacing: 1, justifyContent: "center", alignItems: "center" },
                     react_1.default.createElement(material_1.Grid, { item: true },
-                        react_1.default.createElement(ui_1.AssemblySelector, { onChange: function (val) {
+                        react_1.default.createElement(ui_1.AssemblySelector, { onChange: val => {
                                 setImportError('');
                                 setSelectedAsm(val);
-                            }, session: session, selected: selectedAsm, InputProps: { style: { height: height } } })),
-                    react_1.default.createElement(material_1.Grid, { item: true }, selectedAsm ? (err ? (react_1.default.createElement(Close_1.default, { style: { color: 'red' } })) : value ? (react_1.default.createElement(RefNameAutocomplete_1.default, { fetchResults: function (queryString) {
-                            return (0, util_2.fetchResults)({
-                                queryString: queryString,
-                                assembly: assembly,
-                                textSearchManager: textSearchManager,
-                                rankSearchResults: rankSearchResults,
-                                searchScope: searchScope,
-                            });
-                        }, model: model, assemblyName: assemblyError ? undefined : selectedAsm, value: value, 
+                                setValue('');
+                            }, session: session, selected: selectedAsm, InputProps: { style: { height } } })),
+                    react_1.default.createElement(material_1.Grid, { item: true }, selectedAsm ? (err ? (react_1.default.createElement(Close_1.default, { style: { color: 'red' } })) : value ? (react_1.default.createElement(RefNameAutocomplete_1.default, { fetchResults: queryString => (0, util_2.fetchResults)({
+                            queryString,
+                            assembly,
+                            textSearchManager,
+                            rankSearchResults,
+                            searchScope,
+                        }), model: model, assemblyName: assemblyError ? undefined : selectedAsm, value: value, 
                         // note: minWidth 270 accomodates full width of helperText
-                        minWidth: 270, onChange: function (str) { return setValue(str); }, TextFieldProps: {
+                        minWidth: 270, onChange: str => setValue(str), TextFieldProps: {
                             variant: 'outlined',
                             helperText: 'Enter sequence name, feature name, or location',
                             style: { minWidth: '175px' },
-                            InputProps: { style: { height: height } },
+                            InputProps: { style: { height } },
                         } })) : (react_1.default.createElement(material_1.CircularProgress, { role: "progressbar", size: 20, disableShrink: true }))) : null),
                     react_1.default.createElement(material_1.Grid, { item: true },
                         react_1.default.createElement(material_1.Button, { type: "submit", disabled: !value, className: classes.button, variant: "contained", color: "primary" }, "Open"),
-                        react_1.default.createElement(material_1.Button, { disabled: !value, className: classes.button, onClick: function () {
+                        react_1.default.createElement(material_1.Button, { disabled: !value, className: classes.button, onClick: () => {
                                 model.setError(undefined);
                                 model.showAllRegionsInAssembly(selectedAsm);
                             }, variant: "contained", color: "secondary" }, "Show all regions in assembly"))))),
-        isSearchDialogDisplayed ? (react_1.default.createElement(SearchResultsDialog, { model: model, optAssemblyName: selectedAsm, handleClose: function () { return model.setSearchResults(undefined, undefined); } })) : null));
+        isSearchDialogDisplayed ? (react_1.default.createElement(SearchResultsDialog, { model: model, optAssemblyName: selectedAsm, handleClose: () => model.setSearchResults(undefined, undefined) })) : null));
 });
 exports.default = ImportForm;
 //# sourceMappingURL=ImportForm.js.map

package/dist/LinearGenomeView/components/ImportForm.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ImportForm.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAA6C;AAC7C,uCAA0C;AAC1C,2CAAqC;AACrC,6CAA+C;AAC/C,4CAAyE;AACzE,yCAAiE;AACjE,uFAA6D;AAC7D,sEAAiD;AAEjD,SAAS;AACT,gFAAuD;AACvD,iCAAqC;AACrC,0BAAyD;AACzD,MAAM,mBAAmB,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,uBAAuB,GAAC,CAAC,CAAA;AAEvE,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,mBAAmB,EAAE;QACnB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;IACD,MAAM,EAAE;QACN,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,SAAS,EAAE;QACT,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AAIH,MAAM,UAAU,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;;IACxD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,eAAe,EAAE,iBAAiB,EAAE,GAAG,OAAO,CAAA;IACrE,MAAM,EAAE,iBAAiB,EAAE,uBAAuB,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACnE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,aAAa,CAAC,CAAC,CAAC,CAAC,CAAA;IAChE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACrD,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;IAElD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,WAAW,CAAC,CAAA;IACjD,MAAM,aAAa,GAAG,aAAa,CAAC,MAAM;QACxC,CAAC,CAAC,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,KAAK;QACjB,CAAC,CAAC,0BAA0B,CAAA;IAC9B,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,OAAO,KAAI,EAAE,CAAA;IACvC,MAAM,GAAG,GAAG,aAAa,IAAI,WAAW,CAAA;IACxC,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACtC,MAAM,KAAK,GAAG,KAAK,KAAI,MAAA,OAAO,CAAC,CAAC,CAAC,0CAAE,OAAO,CAAA,CAAA;IAE1C,4EAA4E;IAC5E,4CAA4C;IAC5C,MAAM,MAAM,GAAG,IAAI,qBAAU,CAAC;QAC5B,KAAK,EAAE,KAAK;KACb,CAAC,CAAA;IAEF,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,KAAK,UAAU,oBAAoB,CAAC,KAAa;QAC/C,IAAI,CAAC,MAAM,EAAE;YACX,OAAM;SACP;QACD,IAAI,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;QACjC,IAAI,QAAQ,GAAG,KAAK,IAAI,MAAM,CAAC,WAAW,EAAE,IAAI,EAAE,CAAA;QAClD,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;QACvC,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,WAAW,KAAI,EAAE,CAAA;QAC3C,IAAI;YACF,yCAAyC;YACzC,8CAA8C;YAC9C,4BAA4B;YAC5B,+CAA+C;YAC/C,IACE,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAC;gBAC1B,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC;oBACpB,IAAI,KAAK,SAAS;oBAClB,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,EACpC;gBACA,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAA;aAC5C;iBAAM;gBACL,MAAM,OAAO,GAAG,MAAM,IAAA,mBAAY,EAAC;oBACjC,WAAW,EAAE,KAAK;oBAClB,UAAU,EAAE,OAAO;oBACnB,WAAW;oBACX,iBAAiB;oBACjB,iBAAiB;oBACjB,QAAQ;iBACT,CAAC,CAAA;gBACF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE;oBACtB,KAAK,CAAC,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,WAAW,EAAE,CAAC,CAAA;oBACpD,OAAM;iBACP;qBAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;oBAC/B,QAAQ,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,CAAA;oBACnC,OAAO,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,UAAU,EAAE,CAAA;iBAClC;gBAED,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAA;gBAC3C,IAAI,OAAO,EAAE;oBACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;iBACzB;aACF;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IAED,MAAM,MAAM,GAAG,iBAAa,GAAG,CAAC,CAAA;IAEhC,wBAAwB;IACxB,4EAA4E;IAC5E,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,SAAS;QAC9B,GAAG,CAAC,CAAC,CAAC,8BAAC,iBAAY,IAAC,KAAK,EAAE,GAAG,GAAI,CAAC,CAAC,CAAC,IAAI;QAC1C,8BAAC,oBAAS,IAAC,SAAS,EAAE,OAAO,CAAC,mBAAmB;YAC/C,wCACE,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,KAAK,CAAC,cAAc,EAAE,CAAA;oBACtB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oBACzB,IAAI,KAAK,EAAE;wBACT,oBAAoB,CAAC,KAAK,CAAC,CAAA;qBAC5B;gBACH,CAAC;gBAED,8BAAC,eAAI,IACH,SAAS,QACT,OAAO,EAAE,CAAC,EACV,cAAc,EAAC,QAAQ,EACvB,UAAU,EAAC,QAAQ;oBAEnB,8BAAC,eAAI,IAAC,IAAI;wBACR,8BAAC,qBAAgB,IACf,QAAQ,EAAE,GAAG,CAAC,EAAE;gCACd,cAAc,CAAC,EAAE,CAAC,CAAA;gCAClB,cAAc,CAAC,GAAG,CAAC,CAAA;gCACnB,QAAQ,CAAC,EAAE,CAAC,CAAA;4BACd,CAAC,EACD,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,WAAW,EACrB,UAAU,EAAE,EAAE,KAAK,EAAE,EAAE,MAAM,EAAE,EAAE,GACjC,CACG;oBACP,8BAAC,eAAI,IAAC,IAAI,UACP,WAAW,CAAC,CAAC,CAAC,CACb,GAAG,CAAC,CAAC,CAAC,CACJ,8BAAC,eAAS,IAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,GAAI,CACvC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CACV,8BAAC,6BAAmB,IAClB,YAAY,EAAE,WAAW,CAAC,EAAE,CAC1B,IAAA,mBAAY,EAAC;4BACX,WAAW;4BACX,QAAQ;4BACR,iBAAiB;4BACjB,iBAAiB;4BACjB,WAAW;yBACZ,CAAC,EAEJ,KAAK,EAAE,KAAK,EACZ,YAAY,EAAE,aAAa,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,WAAW,EACrD,KAAK,EAAE,KAAK;wBACZ,0DAA0D;wBAC1D,QAAQ,EAAE,GAAG,EACb,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,EAC9B,cAAc,EAAE;4BACd,OAAO,EAAE,UAAU;4BACnB,UAAU,EACR,gDAAgD;4BAClD,KAAK,EAAE,EAAE,QAAQ,EAAE,OAAO,EAAE;4BAC5B,UAAU,EAAE,EAAE,KAAK,EAAE,EAAE,MAAM,EAAE,EAAE;yBAClC,GACD,CACH,CAAC,CAAC,CAAC,CACF,8BAAC,2BAAgB,IACf,IAAI,EAAC,aAAa,EAClB,IAAI,EAAE,EAAE,EACR,aAAa,SACb,CACH,CACF,CAAC,CAAC,CAAC,IAAI,CACH;oBACP,8BAAC,eAAI,IAAC,IAAI;wBACR,8BAAC,iBAAM,IACL,IAAI,EAAC,QAAQ,EACb,QAAQ,EAAE,CAAC,KAAK,EAChB,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,WAGR;wBACT,8BAAC,iBAAM,IACL,QAAQ,EAAE,CAAC,KAAK,EAChB,SAAS,EAAE,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package/dist/LinearGenomeView/components/LinearGenomeView.js

@@ -3,19 +3,19 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importDefault(require("react"));
-var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
-var Icons_1 = require("@jbrowse/core/ui/Icons");
-var mobx_react_1 = require("mobx-react");
-var Header_1 = __importDefault(require("./Header"));
-var TrackContainer_1 = __importDefault(require("./TrackContainer"));
-var TracksContainer_1 = __importDefault(require("./TracksContainer"));
-var ImportForm_1 = __importDefault(require("./ImportForm"));
-var MiniControls_1 = __importDefault(require("./MiniControls"));
-var SequenceDialog_1 = __importDefault(require("./SequenceDialog"));
-var SearchResultsDialog_1 = __importDefault(require("./SearchResultsDialog"));
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+const react_1 = __importDefault(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const Icons_1 = require("@jbrowse/core/ui/Icons");
+const mobx_react_1 = require("mobx-react");
+const Header_1 = __importDefault(require("./Header"));
+const TrackContainer_1 = __importDefault(require("./TrackContainer"));
+const TracksContainer_1 = __importDefault(require("./TracksContainer"));
+const ImportForm_1 = __importDefault(require("./ImportForm"));
+const MiniControls_1 = __importDefault(require("./MiniControls"));
+const GetSequenceDialog_1 = __importDefault(require("./GetSequenceDialog"));
+const SearchResultsDialog_1 = __importDefault(require("./SearchResultsDialog"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
     note: {
         textAlign: 'center',
         paddingTop: theme.spacing(1),
@@ -41,11 +41,10 @@ var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
             content: '"..."',
         },
     },
-}); });
-var LinearGenomeView = (0, mobx_react_1.observer)(function (_a) {
-    var model = _a.model;
-    var tracks = model.tracks, error = model.error, hideHeader = model.hideHeader, initialized = model.initialized, hasDisplayedRegions = model.hasDisplayedRegions;
-    var classes = useStyles().classes;
+}));
+const LinearGenomeView = (0, mobx_react_1.observer)(({ model }) => {
+    const { tracks, error, hideHeader, initialized, hasDisplayedRegions } = model;
+    const { classes } = useStyles();
     if (!initialized && !error) {
         return (react_1.default.createElement(material_1.Typography, { className: classes.dots, variant: "h5" }, "Loading"));
     }
@@ -53,12 +52,8 @@ var LinearGenomeView = (0, mobx_react_1.observer)(function (_a) {
         return react_1.default.createElement(ImportForm_1.default, { model: model });
     }
     return (react_1.default.createElement("div", { style: { position: 'relative' } },
-        model.seqDialogDisplayed ? (react_1.default.createElement(SequenceDialog_1.default, { model: model, handleClose: function () {
-                model.setSequenceDialogOpen(false);
-            } })) : null,
-        model.isSearchDialogDisplayed ? (react_1.default.createElement(SearchResultsDialog_1.default, { model: model, handleClose: function () {
-                model.setSearchResults(undefined, undefined);
-            } })) : null,
+        model.seqDialogDisplayed ? (react_1.default.createElement(GetSequenceDialog_1.default, { model: model, handleClose: () => model.setGetSequenceDialogOpen(false) })) : null,
+        model.isSearchDialogDisplayed ? (react_1.default.createElement(SearchResultsDialog_1.default, { model: model, handleClose: () => model.setSearchResults(undefined, undefined) })) : null,
         !hideHeader ? (react_1.default.createElement(Header_1.default, { model: model })) : (react_1.default.createElement("div", { style: {
                 position: 'absolute',
                 right: 0,
@@ -67,7 +62,7 @@ var LinearGenomeView = (0, mobx_react_1.observer)(function (_a) {
             react_1.default.createElement(MiniControls_1.default, { model: model }))),
         react_1.default.createElement(TracksContainer_1.default, { model: model }, !tracks.length ? (react_1.default.createElement(material_1.Paper, { variant: "outlined", className: classes.note }, !model.hideNoTracksActive ? (react_1.default.createElement(react_1.default.Fragment, null,
             react_1.default.createElement(material_1.Typography, null, "No tracks active."),
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: react_1.default.createElement(Icons_1.TrackSelector, null) }, "Open track selector"))) : (react_1.default.createElement("div", { style: { height: '48px' } })))) : (tracks.map(function (track) { return (react_1.default.createElement(TrackContainer_1.default, { key: track.id, model: model, track: track })); })))));
+            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: react_1.default.createElement(Icons_1.TrackSelector, null) }, "Open track selector"))) : (react_1.default.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (react_1.default.createElement(TrackContainer_1.default, { key: track.id, model: model, track: track })))))));
 });
 exports.default = LinearGenomeView;
 //# sourceMappingURL=LinearGenomeView.js.map

package/dist/LinearGenomeView/components/LinearGenomeView.js.map

@@ -1 +1 @@
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