@jbrowse/plugin-linear-genome-view 2.0.0 → 2.1.2

package/esm/LinearGenomeView/components/TrackContainer.js

@@ -37,7 +37,7 @@ const useStyles = makeStyles()({
         height: '100%',
         width: '100%',
     },
-    trackLabelInline: {
+    trackLabelOffset: {
         position: 'relative',
         display: 'inline-block',
     },
@@ -55,18 +55,26 @@ const useStyles = makeStyles()({
 });
 const TrackContainerLabel = observer(({ model, view }) => {
     const { classes, cx } = useStyles();
-    const labelStyle = view.trackLabels === 'overlapping'
-        ? classes.trackLabelOverlap
-        : classes.trackLabelInline;
-    return view.trackLabels !== 'hidden' ? (React.createElement(TrackLabel, { track: model, className: cx(classes.trackLabel, labelStyle) })) : null;
+    const display = model.displays[0];
+    const { trackLabel, trackLabelOverlap, trackLabelOffset } = classes;
+    const labelStyle = view.trackLabels !== 'overlapping' || display.prefersOffset
+        ? trackLabelOffset
+        : trackLabelOverlap;
+    return view.trackLabels !== 'hidden' ? (React.createElement(TrackLabel, { track: model, className: cx(trackLabel, labelStyle) })) : null;
 });
 function TrackContainer({ model, track, }) {
     const { classes } = useStyles();
     const display = track.displays[0];
     const { horizontalScroll, draggingTrackId, moveTrack } = model;
-    const { height } = display;
+    const { height, RenderingComponent, DisplayBlurb } = display;
     const trackId = getConf(track, 'trackId');
     const ref = useRef(null);
+    const dimmed = draggingTrackId !== undefined && draggingTrackId !== display.id;
+    const debouncedOnDragEnter = useDebouncedCallback(() => {
+        if (isAlive(display) && dimmed) {
+            moveTrack(draggingTrackId, track.id);
+        }
+    }, 100);
     useEffect(() => {
         if (ref.current) {
             model.trackRefs[trackId] = ref.current;
@@ -75,22 +83,9 @@ function TrackContainer({ model, track, }) {
             delete model.trackRefs[trackId];
         };
     }, [model.trackRefs, trackId]);
-    function onDragEnter() {
-        if (draggingTrackId !== undefined &&
-            isAlive(display) &&
-            draggingTrackId !== display.id) {
-            moveTrack(draggingTrackId, track.id);
-        }
-    }
-    const debouncedOnDragEnter = useDebouncedCallback(onDragEnter, 100);
-    const { RenderingComponent, DisplayBlurb } = display;
-    const dimmed = draggingTrackId !== undefined && draggingTrackId !== display.id;
     return (React.createElement(Paper, { className: classes.root, variant: "outlined" },
         React.createElement(TrackContainerLabel, { model: track, view: model }),
-        React.createElement("div", { className: classes.trackRenderingContainer, style: { height }, onScroll: event => {
-                const target = event.target;
-                display.setScrollTop(target.scrollTop);
-            }, onDragEnter: debouncedOnDragEnter, "data-testid": `trackRenderingContainer-${model.id}-${trackId}`, role: "presentation" },
+        React.createElement("div", { className: classes.trackRenderingContainer, style: { height }, onScroll: event => display.setScrollTop(event.currentTarget.scrollTop), onDragEnter: debouncedOnDragEnter, "data-testid": `trackRenderingContainer-${model.id}-${trackId}` },
             React.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: { transform: `scaleX(${model.scaleFactor})` } },
                 React.createElement(RenderingComponent, { model: display, onHorizontalScroll: horizontalScroll })),
             DisplayBlurb ? (React.createElement("div", { style: {

package/esm/LinearGenomeView/components/TrackContainer.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TrackContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackContainer.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAChD,OAAO,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAEzC,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAA;AAIzD,OAAO,UAAU,MAAM,cAAc,CAAA;AAErC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,IAAI,EAAE;QACJ,SAAS,EAAE,CAAC;KACb;IACD,YAAY,EAAE;QACZ,MAAM,EAAE,CAAC;QACT,SAAS,EAAE,YAAY;QACvB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;IACD,OAAO,EAAE;QACP,aAAa,EAAE,MAAM;QACrB,QAAQ,EAAE,UAAU;QACpB,GAAG,EAAE,CAAC;QACN,IAAI,EAAE,CAAC;QACP,KAAK,EAAE,MAAM;QACb,MAAM,EAAE,CAAC;KACV;IACD,UAAU,EAAE;QACV,MAAM,EAAE,CAAC;KACV;IAED,4EAA4E;IAC5E,4DAA4D;IAC5D,2BAA2B,EAAE;QAC3B,QAAQ,EAAE,UAAU;QACpB,mDAAmD;QACnD,IAAI,EAAE,CAAC,CAAC;QACR,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;KACd;IACD,gBAAgB,EAAE;QAChB,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,cAAc;KACxB;IACD,iBAAiB,EAAE;QACjB,QAAQ,EAAE,UAAU;KACrB;IACD,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,QAAQ;QACnB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,UAAU;QACpB,UAAU,EAAE,MAAM;QAClB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAIF,MAAM,mBAAmB,GAAG,QAAQ,CAClC,CAAC,EAAE,KAAK,EAAE,IAAI,EAAwC,EAAE,EAAE;IACxD,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,UAAU,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,GAAG,OAAO,CAAA;IACnE,MAAM,UAAU,GACd,IAAI,CAAC,WAAW,KAAK,aAAa,IAAI,OAAO,CAAC,aAAa;QACzD,CAAC,CAAC,gBAAgB;QAClB,CAAC,CAAC,iBAAiB,CAAA;IAEvB,OAAO,IAAI,CAAC,WAAW,KAAK,QAAQ,CAAC,CAAC,CAAC,CACrC,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,CAAC,UAAU,EAAE,UAAU,CAAC,GAAI,CACpE,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AAED,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,gBAAgB,EAAE,eAAe,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAC9D,MAAM,EAAE,MAAM,EAAE,kBAAkB,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;IAC5D,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,GAAG,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;IACxB,MAAM,MAAM,GAAG,eAAe,KAAK,SAAS,IAAI,eAAe,KAAK,OAAO,CAAC,EAAE,CAAA;IAC9E,MAAM,oBAAoB,GAAG,oBAAoB,CAAC,GAAG,EAAE;QACrD,IAAI,OAAO,CAAC,OAAO,CAAC,IAAI,MAAM,EAAE;YAC9B,SAAS,CAAC,eAAe,EAAE,KAAK,CAAC,EAAE,CAAC,CAAA;SACrC;IACH,CAAC,EAAE,GAAG,CAAC,CAAA;IACP,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,GAAG,CAAC,OAAO,EAAE;YACf,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,OAAO,CAAA;SACvC;QACD,OAAO,GAAG,EAAE;YACV,OAAO,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;QACjC,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC,CAAA;IAE9B,OAAO,CACL,oBAAC,KAAK,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,EAAE,OAAO,EAAC,UAAU;QAChD,oBAAC,mBAAmB,IAAC,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,GAAI;QAClD,6BACE,SAAS,EAAE,OAAO,CAAC,uBAAuB,EAC1C,KAAK,EAAE,EAAE,MAAM,EAAE,EACjB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,OAAO,CAAC,YAAY,CAAC,KAAK,CAAC,aAAa,CAAC,SAAS,CAAC,EACtE,WAAW,EAAE,oBAAoB,iBACpB,2BAA2B,KAAK,CAAC,EAAE,IAAI,OAAO,EAAE;YAE7D,6BACE,GAAG,EAAE,GAAG,EACR,SAAS,EAAE,OAAO,CAAC,2BAA2B,EAC9C,KAAK,EAAE,EAAE,SAAS,EAAE,UAAU,KAAK,CAAC,WAAW,GAAG,EAAE;gBAEpD,oBAAC,kBAAkB,IACjB,KAAK,EAAE,OAAO,EACd,kBAAkB,EAAE,gBAAgB,GACpC,CACE;YAEL,YAAY,CAAC,CAAC,CAAC,CACd,6BACE,KAAK,EAAE;oBACL,QAAQ,EAAE,UAAU;oBACpB,IAAI,EAAE,CAAC;oBACP,GAAG,EAAE,OAAO,CAAC,MAAM,GAAG,EAAE;iBACzB;gBAED,oBAAC,YAAY,IAAC,KAAK,EAAE,OAAO,GAAI,CAC5B,CACP,CAAC,CAAC,CAAC,IAAI,CACJ;QACN,6BACE,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,KAAK,EAAE;gBACL,MAAM,EAAE,OAAO,CAAC,MAAM;gBACtB,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,SAAS;aACtD,EACD,WAAW,EAAE,oBAAoB,GACjC;QACF,oBAAC,YAAY,IACX,MAAM,EAAE,OAAO,CAAC,YAAY,EAC5B,SAAS,EAAE,OAAO,CAAC,YAAY,GAC/B,CACI,CACT,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,cAAc,CAAC,CAAA"}

package/esm/LinearGenomeView/components/TrackLabel.js

@@ -1,6 +1,6 @@
 import React from 'react';
 import { observer } from 'mobx-react';
-import { getConf, readConfObject } from '@jbrowse/core/configuration';
+import { getConf, readConfObject, } from '@jbrowse/core/configuration';
 import CascadingMenu from '@jbrowse/core/ui/CascadingMenu';
 import { getSession, getContainingView } from '@jbrowse/core/util';
 import { IconButton, Paper, Typography, alpha } from '@mui/material';
@@ -39,6 +39,17 @@ const useStyles = makeStyles()(theme => ({
         padding: theme.spacing(1),
     },
 }));
+function getTrackName(track, session) {
+    const trackName = getConf(track, 'name');
+    if (getConf(track, 'type') === 'ReferenceSequenceTrack') {
+        const asm = session.assemblies.find(a => a.sequence === track.configuration);
+        return (trackName ||
+            (asm
+                ? `Reference Sequence (${readConfObject(asm, 'name')})`
+                : 'Reference Sequence'));
+    }
+    return trackName;
+}
 const TrackLabel = React.forwardRef(({ track, className }, ref) => {
     var _a;
     const { classes, cx } = useStyles();
@@ -46,43 +57,31 @@ const TrackLabel = React.forwardRef(({ track, className }, ref) => {
     const session = getSession(track);
     const trackConf = track.configuration;
     const trackId = getConf(track, 'trackId');
+    const trackName = getTrackName(track, session);
     const popupState = usePopupState({
         popupId: 'trackLabelMenu',
         variant: 'popover',
     });
     const onDragStart = (event) => {
-        const target = event.target;
+        const target = event.currentTarget;
         if (target.parentNode) {
             const parent = target.parentNode;
             event.dataTransfer.setDragImage(parent, 20, 20);
             view.setDraggingTrackId(track.id);
         }
     };
-    const onDragEnd = () => {
-        view.setDraggingTrackId(undefined);
-    };
-    let trackName = getConf(track, 'name');
-    if (getConf(track, 'type') === 'ReferenceSequenceTrack') {
-        const r = session.assemblies.find(a => a.sequence === trackConf);
-        trackName =
-            trackName ||
-                (r
-                    ? `Reference Sequence (${readConfObject(r, 'name')})`
-                    : 'Reference Sequence');
-    }
     const items = [
         ...(((_a = session.getTrackActionMenuItems) === null || _a === void 0 ? void 0 : _a.call(session, trackConf)) || []),
         ...track.trackMenuItems(),
     ].sort((a, b) => (b.priority || 0) - (a.priority || 0));
-    return (React.createElement(React.Fragment, null,
-        React.createElement(Paper, { ref: ref, className: cx(className, classes.root) },
-            React.createElement("span", { draggable: true, className: classes.dragHandle, onDragStart: onDragStart, onDragEnd: onDragEnd, "data-testid": `dragHandle-${view.id}-${trackId}` },
-                React.createElement(DragIcon, { className: classes.dragHandleIcon, fontSize: "small" })),
-            React.createElement(IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track", color: "secondary" },
-                React.createElement(CloseIcon, { fontSize: "small" })),
-            React.createElement(Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName),
-            React.createElement(IconButton, { ...bindTrigger(popupState), className: classes.iconButton, color: "secondary", "data-testid": "track_menu_icon", disabled: !items.length },
-                React.createElement(MoreVertIcon, { fontSize: "small" }))),
+    return (React.createElement(Paper, { ref: ref, className: cx(className, classes.root) },
+        React.createElement("span", { draggable: true, className: classes.dragHandle, onDragStart: onDragStart, onDragEnd: () => view.setDraggingTrackId(undefined), "data-testid": `dragHandle-${view.id}-${trackId}` },
+            React.createElement(DragIcon, { className: classes.dragHandleIcon, fontSize: "small" })),
+        React.createElement(IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track", color: "secondary" },
+            React.createElement(CloseIcon, { fontSize: "small" })),
+        React.createElement(Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName),
+        React.createElement(IconButton, { ...bindTrigger(popupState), className: classes.iconButton, color: "secondary", "data-testid": "track_menu_icon", disabled: !items.length },
+            React.createElement(MoreVertIcon, { fontSize: "small" })),
         React.createElement(CascadingMenu, { ...bindPopover(popupState), onMenuItemClick: (_, callback) => callback(), menuItems: items, popupState: popupState })));
 });
 export default observer(TrackLabel);

package/esm/LinearGenomeView/components/TrackLabel.js.map

@@ -1 +1 @@
-{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AACrE,OAAO,aAAa,MAAM,gCAAgC,CAAA;AAC1D,OAAO,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAElE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EACL,WAAW,EACX,WAAW,EACX,aAAa,GACd,MAAM,+BAA+B,CAAA;AAEtC,QAAQ;AACR,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,QAAQ,MAAM,mCAAmC,CAAA;AACxD,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAIjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AAOH,MAAM,UAAU,GAAG,KAAK,CAAC,UAAU,CACjC,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,GAAG,EAAE,EAAE;;IAC5B,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IAEzC,MAAM,UAAU,GAAG,aAAa,CAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,WAAW,GAAG,CAAC,KAAuC,EAAE,EAAE;QAC9D,MAAM,MAAM,GAAG,KAAK,CAAC,MAAqB,CAAA;QAC1C,IAAI,MAAM,CAAC,UAAU,EAAE;YACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;YAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;YAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;SAClC;IACH,CAAC,CAAA;IAED,MAAM,SAAS,GAAG,GAAG,EAAE;QACrB,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,CAAA;IACpC,CAAC,CAAA;IAED,IAAI,SAAS,GAAG,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;IACtC,IAAI,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,KAAK,wBAAwB,EAAE;QACvD,MAAM,CAAC,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,SAAS,CAAC,CAAA;QAChE,SAAS;YACP,SAAS;gBACT,CAAC,CAAC;oBACA,CAAC,CAAC,uBAAuB,cAAc,CAAC,CAAC,EAAE,MAAM,CAAC,GAAG;oBACrD,CAAC,CAAC,oBAAoB,CAAC,CAAA;KAC5B;IAED,MAAM,KAAK,GAAG;QACZ,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL;QACE,oBAAC,KAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;YACrD,8BACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,SAAS,iBACP,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;gBAE/C,oBAAC,QAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;YACP,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB,EACxB,KAAK,EAAC,WAAW;gBAEjB,oBAAC,SAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;YACb,oBAAC,UAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS,IAE3B,SAAS,CACC;YACb,oBAAC,UAAU,OACL,WAAW,CAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,WAAW,iBACL,iBAAiB,EAC7B,QAAQ,EAAE,CAAC,KAAK,CAAC,MAAM;gBAEvB,oBAAC,YAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB,CACP;QACR,oBAAC,aAAa,OACR,WAAW,CAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACD,CACJ,CAAA;AACH,CAAC,CACF,CAAA;AAED,eAAe,QAAQ,CAAC,UAAU,CAAC,CAAA"}
+{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAEL,OAAO,EACP,cAAc,GACf,MAAM,6BAA6B,CAAA;AACpC,OAAO,aAAa,MAAM,gCAAgC,CAAA;AAC1D,OAAO,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAElE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EACL,WAAW,EACX,WAAW,EACX,aAAa,GACd,MAAM,+BAA+B,CAAA;AAEtC,QAAQ;AACR,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,QAAQ,MAAM,mCAAmC,CAAA;AACxD,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAIjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,SAAS,YAAY,CACnB,KAAqB,EACrB,OAAgD;IAEhD,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;IACxC,IAAI,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,KAAK,wBAAwB,EAAE;QACvD,MAAM,GAAG,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,KAAK,CAAC,aAAa,CAAC,CAAA;QAC5E,OAAO,CACL,SAAS;YACT,CAAC,GAAG;gBACF,CAAC,CAAC,uBAAuB,cAAc,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG;gBACvD,CAAC,CAAC,oBAAoB,CAAC,CAC1B,CAAA;KACF;IACD,OAAO,SAAS,CAAA;AAClB,CAAC;AACD,MAAM,UAAU,GAAG,KAAK,CAAC,UAAU,CACjC,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,GAAG,EAAE,EAAE;;IAC5B,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,SAAS,GAAG,YAAY,CAAC,KAAK,EAAE,OAAO,CAAC,CAAA;IAE9C,MAAM,UAAU,GAAG,aAAa,CAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,WAAW,GAAG,CAAC,KAAuC,EAAE,EAAE;QAC9D,MAAM,MAAM,GAAG,KAAK,CAAC,aAAa,CAAA;QAClC,IAAI,MAAM,CAAC,UAAU,EAAE;YACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;YAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;YAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;SAClC;IACH,CAAC,CAAA;IAED,MAAM,KAAK,GAAG;QACZ,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL,oBAAC,KAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;QACrD,8BACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,iBACtC,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;YAE/C,oBAAC,QAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;QACP,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB,EACxB,KAAK,EAAC,WAAW;YAEjB,oBAAC,SAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;QACb,oBAAC,UAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS,IAE3B,SAAS,CACC;QACb,oBAAC,UAAU,OACL,WAAW,CAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,WAAW,iBACL,iBAAiB,EAC7B,QAAQ,EAAE,CAAC,KAAK,CAAC,MAAM;YAEvB,oBAAC,YAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB;QACb,oBAAC,aAAa,OACR,WAAW,CAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACI,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,eAAe,QAAQ,CAAC,UAAU,CAAC,CAAA"}

package/esm/LinearGenomeView/components/TracksContainer.js

@@ -5,7 +5,7 @@ import normalizeWheel from 'normalize-wheel';
 import { SCALE_BAR_HEIGHT } from '..';
 import RubberBand from './RubberBand';
 import ScaleBar from './ScaleBar';
-import VerticalGuides from './VerticalGuides';
+import Gridlines from './Gridlines';
 import CenterLine from './CenterLine';
 const useStyles = makeStyles()({
     tracksContainer: {
@@ -133,7 +133,7 @@ function TracksContainer({ children, model, }) {
         return () => { };
     }, [model]);
     return (React.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: mouseDown, onMouseUp: mouseUp, onMouseLeave: mouseLeave },
-        React.createElement(VerticalGuides, { model: model }),
+        model.showGridlines ? React.createElement(Gridlines, { model: model }) : null,
         model.showCenterLine ? React.createElement(CenterLine, { model: model }) : null,
         React.createElement(RubberBand, { model: model, ControlComponent: React.createElement(ScaleBar, { model: model, style: { height: SCALE_BAR_HEIGHT, boxSizing: 'border-box' } }) }),
         children));

package/esm/LinearGenomeView/components/TracksContainer.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TracksContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TracksContainer.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAC1D,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,cAAc,MAAM,iBAAiB,CAAA;AAE5C,OAAO,EAA8B,gBAAgB,EAAE,MAAM,IAAI,CAAA;AACjE,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,QAAQ,MAAM,YAAY,CAAA;AACjC,OAAO,SAAS,MAAM,aAAa,CAAA;AACnC,OAAO,UAAU,MAAM,cAAc,CAAA;AAErC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,eAAe,EAAE;QACf,QAAQ,EAAE,UAAU;QACpB,QAAQ,EAAE,QAAQ;KACnB;IACD,MAAM,EAAE;QACN,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAKF,SAAS,eAAe,CAAC,EACvB,QAAQ,EACR,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,2EAA2E;IAC3E,yBAAyB;IACzB,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACvB,MAAM,SAAS,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IAC/B,MAAM,OAAO,GAAG,MAAM,EAAS,CAAA;IAC/B,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,KAAK,GAAG,MAAM,CAAS,CAAC,CAAC,CAAA;IAE/B,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAEzD,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,OAAO,GAAG,GAAG,EAAE,GAAE,CAAC,CAAA;QAEtB,SAAS,eAAe,CAAC,KAAiB;YACxC,KAAK,CAAC,cAAc,EAAE,CAAA;YACtB,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YAC3B,MAAM,QAAQ,GAAG,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YACtC,IAAI,QAAQ,EAAE;gBACZ,uEAAuE;gBACvE,8EAA8E;gBAC9E,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE;oBACtB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;oBACxB,MAAM,CAAC,qBAAqB,CAAC,GAAG,EAAE;wBAChC,KAAK,CAAC,gBAAgB,CAAC,CAAC,QAAQ,CAAC,CAAA;wBACjC,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;wBACzB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;oBAC/B,CAAC,CAAC,CAAA;iBACH;aACF;QACH,CAAC;QAED,SAAS,aAAa;YACpB,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;YACjB,IAAI,aAAa,EAAE;gBACjB,gBAAgB,CAAC,KAAK,CAAC,CAAA;aACxB;QACH,CAAC;QAED,IAAI,aAAa,EAAE;YACjB,MAAM,CAAC,gBAAgB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;YAC3D,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YACvD,OAAO,GAAG,GAAG,EAAE;gBACb,MAAM,CAAC,mBAAmB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;gBAC9D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YAC5D,CAAC,CAAA;SACF;QACD,OAAO,OAAO,CAAA;IAChB,CAAC,EAAE,CAAC,KAAK,EAAE,aAAa,EAAE,KAAK,CAAC,CAAC,CAAA;IAEjC,SAAS,SAAS,CAAC,KAAuB;QACxC,2DAA2D;QAC3D,MAAM,MAAM,GAAG,KAAK,CAAC,MAAqB,CAAA;QAC1C,IAAI,MAAM,CAAC,SAAS,IAAI,MAAM,CAAC,OAAO,CAAC,OAAO,EAAE;YAC9C,OAAM;SACP;QAED,qCAAqC;QACrC,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE;YACtB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;YAC7B,gBAAgB,CAAC,IAAI,CAAC,CAAA;SACvB;IACH,CAAC;IAED,yEAAyE;IACzE,wEAAwE;IACxE,SAAS,OAAO,CAAC,KAAuB;QACtC,KAAK,CAAC,cAAc,EAAE,CAAA;QACtB,gBAAgB,CAAC,KAAK,CAAC,CAAA;IACzB,CAAC;IAED,SAAS,UAAU,CAAC,KAAuB;QACzC,KAAK,CAAC,cAAc,EAAE,CAAA;IACxB,CAAC;IAED,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,CAAA;QACxB,8CAA8C;QAC9C,yCAAyC;QACzC,SAAS,OAAO,CAAC,SAAqB;YACpC,MAAM,KAAK,GAAG,cAAc,CAAC,SAAS,CAAC,CAAA;YACvC,IAAI,SAAS,CAAC,OAAO,KAAK,IAAI,EAAE;gBAC9B,SAAS,CAAC,cAAc,EAAE,CAAA;gBAC1B,KAAK,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,GAAG,GAAG,CAAA;gBACnC,KAAK,CAAC,cAAc,CAClB,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC,CAChE,CAAA;gBACD,IAAI,OAAO,CAAC,OAAO,EAAE;oBACnB,YAAY,CAAC,OAAO,CAAC,OAAO,CAAC,CAAA;iBAC9B;gBACD,OAAO,CAAC,OAAO,GAAG,UAAU,CAAC,GAAG,EAAE;oBAChC,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,CAAA;oBACvB,KAAK,CAAC,MAAM,CACV,KAAK,CAAC,OAAO,GAAG,CAAC;wBACf,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC;wBACrC,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC,CACxC,CAAA;oBACD,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;gBACnB,CAAC,EAAE,GAAG,CAAC,CAAA;aACR;iBAAM;gBACL,gEAAgE;gBAChE,qEAAqE;gBACrE,8BAA8B;gBAC9B,IAAI,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,CAAC,EAAE;oBACvD,SAAS,CAAC,cAAc,EAAE,CAAA;iBAC3B;gBACD,KAAK,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;gBAC7B,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE;oBACtB,uEAAuE;oBACvE,8EAA8E;oBAC9E,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;oBACxB,MAAM,CAAC,qBAAqB,CAAC,GAAG,EAAE;wBAChC,KAAK,CAAC,gBAAgB,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;wBACrC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;wBACjB,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;oBAC3B,CAAC,CAAC,CAAA;iBACH;aACF;QACH,CAAC;QACD,IAAI,IAAI,EAAE;YACR,IAAI,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;YACvC,OAAO,GAAG,EAAE;gBACV,IAAI,CAAC,mBAAmB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;YAC5C,CAAC,CAAA;SACF;QACD,OAAO,GAAG,EAAE,GAAE,CAAC,CAAA;IACjB,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAEX,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,iBACI,gBAAgB,EAC5B,SAAS,EAAE,OAAO,CAAC,eAAe,EAClC,WAAW,EAAE,SAAS,EACtB,SAAS,EAAE,OAAO,EAClB,YAAY,EAAE,UAAU;QAEvB,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QACxD,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QAE3D,oBAAC,UAAU,IACT,KAAK,EAAE,KAAK,EACZ,gBAAgB,EACd,oBAAC,QAAQ,IACP,KAAK,EAAE,KAAK,EACZ,KAAK,EAAE,EAAE,MAAM,EAAE,gBAAgB,EAAE,SAAS,EAAE,YAAY,EAAE,GAC5D,GAEJ;QACD,QAAQ,CACL,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,eAAe,CAAC,CAAA"}

package/esm/LinearGenomeView/index.d.ts

@@ -61,6 +61,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+    showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
 }, {
     width: number;
 } & {
@@ -113,45 +114,10 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
         includeAggregateIndexes: boolean;
         tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
     };
-    bpToPx({ refName, coord, regionNumber, }: {
-        refName: string;
-        coord: number;
-        regionNumber?: number | undefined;
-    }): {
-        index: number;
-        offsetPx: number;
-    } | undefined;
-    /**
-     *
-     * @param px - px in the view area, return value is the displayed regions
-     * @returns BpOffset of the displayed region that it lands in
-     */
-    pxToBp(px: number): {
-        oob: boolean;
-        coord: number;
-        offset: number;
-        index: number;
-        start: number;
-        end: number;
-        reversed: boolean;
-        refName: string;
-        assemblyName: string;
-    };
     getTrack(id: string): any;
     rankSearchResults(results: BaseResult[]): BaseResult[];
     rewriteOnClicks(trackType: string, viewMenuActions: MenuItem[]): void;
     readonly trackTypeActions: Map<string, MenuItem[]>;
-    readonly centerLineInfo: {
-        oob: boolean;
-        coord: number;
-        offset: number;
-        index: number;
-        start: number;
-        end: number;
-        reversed: boolean;
-        refName: string;
-        assemblyName: string;
-    } | undefined;
 } & {
     setShowCytobands(flag: boolean): void;
     setWidth(newWidth: number): void;
@@ -159,11 +125,12 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     toggleHeader(): void;
     toggleHeaderOverview(): void;
     toggleNoTracksActive(): void;
+    toggleShowGridlines(): void;
     scrollTo(offsetPx: number): number;
     zoomTo(bpPerPx: number): number;
-    setOffsets(left: undefined | BpOffset, right: undefined | BpOffset): void;
-    setSearchResults(results: BaseResult[] | undefined, query: string | undefined): void;
-    setSequenceDialogOpen(open: boolean): void;
+    setOffsets(left?: BpOffset, right?: BpOffset): void;
+    setSearchResults(results?: BaseResult[], query?: string): void;
+    setGetSequenceDialogOpen(open: boolean): void;
     setNewView(bpPerPx: number, offsetPx: number): void;
     horizontallyFlip(): void;
     showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
@@ -176,30 +143,6 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     toggleCenterLine(): void;
     setDisplayedRegions(regions: Region[]): void;
     activateTrackSelector(): import("@jbrowse/core/util").Widget;
-    navToLocString(locString: string, optAssemblyName?: string): void;
-    /**
-     * Navigate to a location based on its refName and optionally start, end,
-     * and assemblyName. Can handle if there are multiple displayedRegions
-     * from same refName. Only navigates to a location if it is entirely
-     * within a displayedRegion. Navigates to the first matching location
-     * encountered.
-     *
-     * Throws an error if navigation was unsuccessful
-     *
-     * @param location - a proposed location to navigate to
-     */
-    navTo(query: NavLocation): void;
-    navToMultiple(locations: NavLocation[]): void;
-    /**
-     * Navigate to a location based on user clicking and dragging on the
-     * overview scale bar to select a region to zoom into.
-     * Can handle if there are multiple displayedRegions from same refName.
-     * Only navigates to a location if it is entirely within a displayedRegion.
-     *
-     * @param leftPx- `object as {start, end, index, offset}`, offset = start of user drag
-     * @param rightPx- `object as {start, end, index, offset}`, offset = end of user drag
-     */
-    zoomToDisplayedRegions(leftPx: BpOffset, rightPx: BpOffset): void;
     /**
      * Helper method for the fetchSequence.
      * Retrieves the corresponding regions that were selected by the rubberband
@@ -208,7 +151,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
      * @param rightOffset - `object as {start, end, index, offset}`, offset = end of user drag
      * @returns array of Region[]
      */
-    getSelectedRegions(leftOffset: BpOffset | undefined, rightOffset: BpOffset | undefined): {
+    getSelectedRegions(leftOffset?: BpOffset, rightOffset?: BpOffset): {
         start: number;
         end: number;
         regionNumber?: number | undefined;
@@ -222,23 +165,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
         isLeftEndOfDisplayedRegion?: boolean | undefined;
     }[];
     afterDisplayedRegionsSet(cb: Function): void;
-    /**
-     * offset is the base-pair-offset in the displayed region, index is the index of the
-     * displayed region in the linear genome view
-     *
-     * @param start - object as `{start, end, offset, index}`
-     * @param end - object as `{start, end, offset, index}`
-     */
-    moveTo(start: BpOffset, end: BpOffset): void;
     horizontalScroll(distance: number): number;
-    /**
-     * scrolls the view to center on the given bp. if that is not in any
-     * of the displayed regions, does nothing
-     * @param bp - basepair at which you want to center the view
-     * @param refName - refName of the displayedRegion you are centering at
-     * @param regionIndex - index of the displayedRegion
-     */
-    centerAt(bp: number, refName: string, regionIndex: number): void;
     center(): void;
     showAllRegions(): void;
     showAllRegionsInAssembly(assemblyName?: string): void;
@@ -279,8 +206,68 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     afterAttach(): void;
 } & {
     exportSvg(opts?: ExportSvgOptions): Promise<void>;
+    /**
+     * offset is the base-pair-offset in the displayed region, index is the index of the
+     * displayed region in the linear genome view
+     *
+     * @param start - object as `{start, end, offset, index}`
+     * @param end - object as `{start, end, offset, index}`
+     */
+    moveTo(start?: BpOffset, end?: BpOffset): void;
+    navToLocString(locString: string, optAssemblyName?: string): void;
+    /**
+     * Navigate to a location based on its refName and optionally start, end,
+     * and assemblyName. Can handle if there are multiple displayedRegions
+     * from same refName. Only navigates to a location if it is entirely
+     * within a displayedRegion. Navigates to the first matching location
+     * encountered.
+     *
+     * Throws an error if navigation was unsuccessful
+     *
+     * @param location - a proposed location to navigate to
+     */
+    navTo(query: NavLocation): void;
+    navToMultiple(locations: NavLocation[]): void;
 } & {
     rubberBandMenuItems(): MenuItem[];
+    bpToPx({ refName, coord, regionNumber, }: {
+        refName: string;
+        coord: number;
+        regionNumber?: number | undefined;
+    }): {
+        index: number;
+        offsetPx: number;
+    } | undefined;
+    /**
+     * scrolls the view to center on the given bp. if that is not in any
+     * of the displayed regions, does nothing
+     * @param coord - basepair at which you want to center the view
+     * @param refName - refName of the displayedRegion you are centering at
+     * @param regionNumber - index of the displayedRegion
+     */
+    centerAt(coord: number, refName: string, regionNumber: number): void;
+    pxToBp(px: number): {
+        coord: number;
+        index: number;
+        refName: string;
+        oob: boolean;
+        assemblyName: string;
+        offset: number;
+        start: number;
+        end: number;
+        reversed: boolean;
+    };
+    readonly centerLineInfo: {
+        coord: number;
+        index: number;
+        refName: string;
+        oob: boolean;
+        assemblyName: string;
+        offset: number;
+        start: number;
+        end: number;
+        reversed: boolean;
+    } | undefined;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export { renderToSvg, RefNameAutocomplete, SearchBox };
 export declare type LinearGenomeViewStateModel = ReturnType<typeof stateModelFactory>;