@jbrowse/plugin-linear-genome-view 1.6.9 → 1.7.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (111) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +232 -0
  3. package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
  4. package/dist/BaseLinearDisplay/components/Block.js +86 -0
  5. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
  6. package/dist/BaseLinearDisplay/components/LinearBlocks.js +110 -0
  7. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  8. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +192 -0
  9. package/dist/BaseLinearDisplay/index.d.ts +5 -5
  10. package/dist/BaseLinearDisplay/index.js +41 -0
  11. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
  12. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +763 -0
  13. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
  14. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +24 -0
  15. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
  16. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +328 -0
  17. package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
  18. package/dist/LinearBareDisplay/configSchema.js +19 -0
  19. package/dist/LinearBareDisplay/index.d.ts +2 -2
  20. package/dist/LinearBareDisplay/index.js +21 -0
  21. package/dist/LinearBareDisplay/index.test.js +33 -0
  22. package/dist/LinearBareDisplay/model.d.ts +192 -192
  23. package/dist/LinearBareDisplay/model.js +44 -0
  24. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
  25. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +94 -0
  26. package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
  27. package/dist/LinearBasicDisplay/configSchema.js +25 -0
  28. package/dist/LinearBasicDisplay/index.d.ts +2 -2
  29. package/dist/LinearBasicDisplay/index.js +23 -0
  30. package/dist/LinearBasicDisplay/model.d.ts +213 -213
  31. package/dist/LinearBasicDisplay/model.js +162 -0
  32. package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
  33. package/dist/LinearGenomeView/components/CenterLine.js +80 -0
  34. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
  35. package/dist/LinearGenomeView/components/ExportSvgDialog.js +137 -0
  36. package/dist/LinearGenomeView/components/Header.d.ts +7 -7
  37. package/dist/LinearGenomeView/components/Header.js +144 -0
  38. package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
  39. package/dist/LinearGenomeView/components/HelpDialog.js +48 -0
  40. package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
  41. package/dist/LinearGenomeView/components/ImportForm.js +330 -0
  42. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
  43. package/dist/LinearGenomeView/components/LinearGenomeView.js +129 -0
  44. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +234 -0
  45. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
  46. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +349 -0
  47. package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
  48. package/dist/LinearGenomeView/components/MiniControls.js +83 -0
  49. package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
  50. package/dist/LinearGenomeView/components/OverviewRubberBand.js +310 -0
  51. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
  52. package/dist/LinearGenomeView/components/OverviewScaleBar.js +403 -0
  53. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
  54. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +331 -0
  55. package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
  56. package/dist/LinearGenomeView/components/RubberBand.js +309 -0
  57. package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
  58. package/dist/LinearGenomeView/components/Ruler.js +101 -0
  59. package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
  60. package/dist/LinearGenomeView/components/ScaleBar.js +184 -0
  61. package/dist/LinearGenomeView/components/ScaleBar.test.js +180 -0
  62. package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
  63. package/dist/LinearGenomeView/components/SearchBox.js +201 -0
  64. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
  65. package/dist/LinearGenomeView/components/SearchResultsDialog.js +159 -0
  66. package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
  67. package/dist/LinearGenomeView/components/SequenceDialog.js +304 -0
  68. package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
  69. package/dist/LinearGenomeView/components/TrackContainer.js +179 -0
  70. package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
  71. package/dist/LinearGenomeView/components/TrackLabel.js +165 -0
  72. package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
  73. package/dist/LinearGenomeView/components/TracksContainer.js +214 -0
  74. package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
  75. package/dist/LinearGenomeView/components/VerticalGuides.js +116 -0
  76. package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
  77. package/dist/LinearGenomeView/components/ZoomControls.js +92 -0
  78. package/dist/LinearGenomeView/components/util.d.ts +2 -2
  79. package/dist/LinearGenomeView/components/util.js +16 -0
  80. package/dist/LinearGenomeView/index.d.ts +292 -292
  81. package/dist/LinearGenomeView/index.js +1418 -0
  82. package/dist/LinearGenomeView/index.test.js +1170 -0
  83. package/dist/LinearGenomeView/util.d.ts +14 -14
  84. package/dist/LinearGenomeView/util.js +93 -0
  85. package/dist/LinearGenomeView/util.test.js +78 -0
  86. package/dist/index.d.ts +565 -565
  87. package/dist/index.js +293 -6
  88. package/package.json +6 -9
  89. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +2 -0
  90. package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +10 -8
  91. package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +1 -1
  92. package/src/LinearBasicDisplay/model.ts +17 -18
  93. package/src/LinearGenomeView/components/Header.tsx +1 -1
  94. package/src/LinearGenomeView/components/ImportForm.tsx +10 -4
  95. package/src/LinearGenomeView/components/LinearGenomeView.test.js +1 -0
  96. package/src/LinearGenomeView/components/OverviewScaleBar.tsx +2 -2
  97. package/src/LinearGenomeView/components/RubberBand.tsx +14 -24
  98. package/src/LinearGenomeView/components/ScaleBar.test.tsx +1 -0
  99. package/src/LinearGenomeView/components/ScaleBar.tsx +3 -6
  100. package/src/LinearGenomeView/components/SequenceDialog.tsx +1 -1
  101. package/src/LinearGenomeView/components/TrackLabel.tsx +1 -1
  102. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +0 -4
  103. package/src/LinearGenomeView/index.tsx +2 -3
  104. package/dist/LinearBareDisplay/index.test.d.ts +0 -1
  105. package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
  106. package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
  107. package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
  108. package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
  109. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
  110. package/dist/plugin-linear-genome-view.esm.js +0 -8105
  111. package/dist/plugin-linear-genome-view.esm.js.map +0 -1
package/dist/index.d.ts CHANGED
@@ -1,565 +1,565 @@
1
- /// <reference types="react" />
2
- import Plugin from '@jbrowse/core/Plugin';
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- import PluginManager from '@jbrowse/core/PluginManager';
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- import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigSchema, BlockModel } from './BaseLinearDisplay';
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- import { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
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- import { LinearGenomeViewModel, LinearGenomeViewStateModel, renderToSvg, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
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- import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory } from './LinearBasicDisplay';
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- export default class LinearGenomeViewPlugin extends Plugin {
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- name: string;
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- exports: {
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- BaseLinearDisplayComponent: (props: {
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- model: import("mobx-state-tree").ModelInstanceTypeProps<{
13
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- type: import("mobx-state-tree").ISimpleType<string>;
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- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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- } & {
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- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
18
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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- key: import("mobx-state-tree").ISimpleType<string>;
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- region: import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
23
- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
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- setRefName(newRefName: string): void;
29
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
30
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
31
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
32
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
33
- }, {
34
- renderInProgress: AbortController | undefined;
35
- filled: boolean;
36
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
37
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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- layout: any;
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- status: string;
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- error: unknown;
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- message: string | undefined;
42
- maxHeightReached: boolean;
43
- ReactComponent: ({ model, }: {
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- model: any;
45
- }) => any;
46
- renderProps: any;
47
- } & {
48
- doReload(): void;
49
- afterAttach(): void;
50
- setStatus(message: string): void;
51
- setLoading(abortController: AbortController): void;
52
- setMessage(messageText: string): void;
53
- setRendered(props: {
54
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
55
- features: Map<string, import("@jbrowse/core/util").Feature>;
56
- layout: any;
57
- maxHeightReached: boolean;
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- renderProps: any;
59
- } | undefined): void;
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- setError(error: unknown): void;
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- reload(): void;
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- beforeDestroy(): void;
63
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
64
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
65
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
66
- }> & {
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- rendererTypeName: string;
68
- error: unknown;
69
- } & {
70
- readonly RenderingComponent: import("react").FC<{
71
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
72
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
73
- type: import("mobx-state-tree").ISimpleType<string>;
74
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
75
- }> & {
76
- rendererTypeName: string;
77
- error: unknown;
78
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
79
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
80
- type: import("mobx-state-tree").ISimpleType<string>;
81
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
82
- }, {
83
- rendererTypeName: string;
84
- error: unknown;
85
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
86
- onHorizontalScroll?: Function | undefined;
87
- blockState?: Record<string, any> | undefined;
88
- }>;
89
- readonly DisplayBlurb: import("react").FC<{
90
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
91
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
92
- type: import("mobx-state-tree").ISimpleType<string>;
93
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
94
- }> & {
95
- rendererTypeName: string;
96
- error: unknown;
97
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
98
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
99
- type: import("mobx-state-tree").ISimpleType<string>;
100
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
101
- }, {
102
- rendererTypeName: string;
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- error: unknown;
104
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
105
- }> | null;
106
- readonly adapterConfig: any;
107
- readonly parentTrack: any;
108
- renderProps(): any;
109
- readonly rendererType: any;
110
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
111
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
112
- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
113
- regionCannotBeRendered(): undefined;
114
- } & {
115
- setError(error?: unknown): void;
116
- setRpcDriverName(rpcDriverName: string): void;
117
- reload(): void;
118
- } & {
119
- currBpPerPx: number;
120
- message: string;
121
- featureIdUnderMouse: string | undefined;
122
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
123
- scrollTop: number;
124
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
125
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
126
- } & {
127
- readonly blockType: "staticBlocks" | "dynamicBlocks";
128
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
129
- } & {
130
- readonly renderDelay: number;
131
- readonly TooltipComponent: import("react").FC<any>;
132
- readonly selectedFeatureId: string | undefined;
133
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
134
- } & {
135
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
136
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
137
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
138
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
139
- searchFeatureByID(id: string): [number, number, number, number] | undefined;
140
- readonly currentBytesRequested: number;
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- readonly currentFeatureScreenDensity: number;
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- readonly maxFeatureScreenDensity: any;
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- readonly estimatedStatsReady: boolean;
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- readonly maxAllowableBytes: number;
145
- } & {
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- setMessage(message: string): void;
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- afterAttach(): void;
148
- estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
149
- headers?: Record<string, string> | undefined;
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- signal?: AbortSignal | undefined;
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- filters?: string[] | undefined;
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- }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
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- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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- clearRegionStats(): void;
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- setHeight(displayHeight: number): number;
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- resizeHeight(distance: number): number;
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- setScrollTop(scrollTop: number): void;
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- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
160
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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- setCurrBpPerPx(n: number): void;
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- deleteBlock(key: string): void;
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- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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- clearFeatureSelection(): void;
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- setFeatureIdUnderMouse(feature: string | undefined): void;
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- reload(): void;
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- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
168
- } & {
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- readonly regionTooLarge: boolean;
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- readonly regionTooLargeReason: string;
171
- } & {
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- reload(): Promise<void>;
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- afterAttach(): void;
174
- } & {
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- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
176
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
177
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
178
- contextMenuItems(): {
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- label: string;
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- icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
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- onClick: () => void;
182
- }[];
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- renderProps(): any;
184
- } & {
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- renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
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- overrideHeight: number;
187
- }): Promise<JSX.Element>;
188
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
190
- type: import("mobx-state-tree").ISimpleType<string>;
191
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
192
- } & {
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- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
194
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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- key: import("mobx-state-tree").ISimpleType<string>;
196
- region: import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
198
- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
201
- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
203
- }, {
204
- setRefName(newRefName: string): void;
205
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
206
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
207
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
208
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
209
- }, {
210
- renderInProgress: AbortController | undefined;
211
- filled: boolean;
212
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
213
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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- layout: any;
215
- status: string;
216
- error: unknown;
217
- message: string | undefined;
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- maxHeightReached: boolean;
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- ReactComponent: ({ model, }: {
220
- model: any;
221
- }) => any;
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- renderProps: any;
223
- } & {
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- doReload(): void;
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- afterAttach(): void;
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- setStatus(message: string): void;
227
- setLoading(abortController: AbortController): void;
228
- setMessage(messageText: string): void;
229
- setRendered(props: {
230
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
231
- features: Map<string, import("@jbrowse/core/util").Feature>;
232
- layout: any;
233
- maxHeightReached: boolean;
234
- renderProps: any;
235
- } | undefined): void;
236
- setError(error: unknown): void;
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- reload(): void;
238
- beforeDestroy(): void;
239
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
240
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
241
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
242
- }, {
243
- rendererTypeName: string;
244
- error: unknown;
245
- } & {
246
- readonly RenderingComponent: import("react").FC<{
247
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
248
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
249
- type: import("mobx-state-tree").ISimpleType<string>;
250
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
251
- }> & {
252
- rendererTypeName: string;
253
- error: unknown;
254
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
255
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
256
- type: import("mobx-state-tree").ISimpleType<string>;
257
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
258
- }, {
259
- rendererTypeName: string;
260
- error: unknown;
261
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
262
- onHorizontalScroll?: Function | undefined;
263
- blockState?: Record<string, any> | undefined;
264
- }>;
265
- readonly DisplayBlurb: import("react").FC<{
266
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
267
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
268
- type: import("mobx-state-tree").ISimpleType<string>;
269
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
270
- }> & {
271
- rendererTypeName: string;
272
- error: unknown;
273
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
274
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
275
- type: import("mobx-state-tree").ISimpleType<string>;
276
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
277
- }, {
278
- rendererTypeName: string;
279
- error: unknown;
280
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
281
- }> | null;
282
- readonly adapterConfig: any;
283
- readonly parentTrack: any;
284
- renderProps(): any;
285
- readonly rendererType: any;
286
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
287
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
288
- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
289
- regionCannotBeRendered(): undefined;
290
- } & {
291
- setError(error?: unknown): void;
292
- setRpcDriverName(rpcDriverName: string): void;
293
- reload(): void;
294
- } & {
295
- currBpPerPx: number;
296
- message: string;
297
- featureIdUnderMouse: string | undefined;
298
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
299
- scrollTop: number;
300
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
301
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
302
- } & {
303
- readonly blockType: "staticBlocks" | "dynamicBlocks";
304
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
305
- } & {
306
- readonly renderDelay: number;
307
- readonly TooltipComponent: import("react").FC<any>;
308
- readonly selectedFeatureId: string | undefined;
309
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
310
- } & {
311
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
312
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
313
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
314
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
315
- searchFeatureByID(id: string): [number, number, number, number] | undefined;
316
- readonly currentBytesRequested: number;
317
- readonly currentFeatureScreenDensity: number;
318
- readonly maxFeatureScreenDensity: any;
319
- readonly estimatedStatsReady: boolean;
320
- readonly maxAllowableBytes: number;
321
- } & {
322
- setMessage(message: string): void;
323
- afterAttach(): void;
324
- estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
325
- headers?: Record<string, string> | undefined;
326
- signal?: AbortSignal | undefined;
327
- filters?: string[] | undefined;
328
- }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
329
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
330
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
331
- clearRegionStats(): void;
332
- setHeight(displayHeight: number): number;
333
- resizeHeight(distance: number): number;
334
- setScrollTop(scrollTop: number): void;
335
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
336
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
337
- setCurrBpPerPx(n: number): void;
338
- deleteBlock(key: string): void;
339
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
340
- clearFeatureSelection(): void;
341
- setFeatureIdUnderMouse(feature: string | undefined): void;
342
- reload(): void;
343
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
344
- } & {
345
- readonly regionTooLarge: boolean;
346
- readonly regionTooLargeReason: string;
347
- } & {
348
- reload(): Promise<void>;
349
- afterAttach(): void;
350
- } & {
351
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
352
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
353
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
354
- contextMenuItems(): {
355
- label: string;
356
- icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
357
- onClick: () => void;
358
- }[];
359
- renderProps(): any;
360
- } & {
361
- renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
362
- overrideHeight: number;
363
- }): Promise<JSX.Element>;
364
- }, import("mobx-state-tree")._NotCustomized, {
365
- id: string;
366
- type: string;
367
- rpcDriverName: string | undefined;
368
- height: number;
369
- userBpPerPxLimit: number | undefined;
370
- userByteSizeLimit: number | undefined;
371
- }>>;
372
- children?: import("react").ReactNode;
373
- }) => JSX.Element;
374
- BaseLinearDisplay: import("mobx-state-tree").IModelType<{
375
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
376
- type: import("mobx-state-tree").ISimpleType<string>;
377
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
378
- } & {
379
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
380
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
381
- key: import("mobx-state-tree").ISimpleType<string>;
382
- region: import("mobx-state-tree").IModelType<{
383
- refName: import("mobx-state-tree").ISimpleType<string>;
384
- start: import("mobx-state-tree").ISimpleType<number>;
385
- end: import("mobx-state-tree").ISimpleType<number>;
386
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
387
- } & {
388
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
389
- }, {
390
- setRefName(newRefName: string): void;
391
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
392
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
393
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
394
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
395
- }, {
396
- renderInProgress: AbortController | undefined;
397
- filled: boolean;
398
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
399
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
400
- layout: any;
401
- status: string;
402
- error: unknown;
403
- message: string | undefined;
404
- maxHeightReached: boolean;
405
- ReactComponent: ({ model, }: {
406
- model: any;
407
- }) => any;
408
- renderProps: any;
409
- } & {
410
- doReload(): void;
411
- afterAttach(): void;
412
- setStatus(message: string): void;
413
- setLoading(abortController: AbortController): void;
414
- setMessage(messageText: string): void;
415
- setRendered(props: {
416
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
417
- features: Map<string, import("@jbrowse/core/util").Feature>;
418
- layout: any;
419
- maxHeightReached: boolean;
420
- renderProps: any;
421
- } | undefined): void;
422
- setError(error: unknown): void;
423
- reload(): void;
424
- beforeDestroy(): void;
425
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
426
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
427
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
428
- }, {
429
- rendererTypeName: string;
430
- error: unknown;
431
- } & {
432
- readonly RenderingComponent: import("react").FC<{
433
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
434
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
435
- type: import("mobx-state-tree").ISimpleType<string>;
436
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
437
- }> & {
438
- rendererTypeName: string;
439
- error: unknown;
440
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
441
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
442
- type: import("mobx-state-tree").ISimpleType<string>;
443
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
444
- }, {
445
- rendererTypeName: string;
446
- error: unknown;
447
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
448
- onHorizontalScroll?: Function | undefined;
449
- blockState?: Record<string, any> | undefined;
450
- }>;
451
- readonly DisplayBlurb: import("react").FC<{
452
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
453
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
454
- type: import("mobx-state-tree").ISimpleType<string>;
455
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
456
- }> & {
457
- rendererTypeName: string;
458
- error: unknown;
459
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
460
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
461
- type: import("mobx-state-tree").ISimpleType<string>;
462
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
463
- }, {
464
- rendererTypeName: string;
465
- error: unknown;
466
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
467
- }> | null;
468
- readonly adapterConfig: any;
469
- readonly parentTrack: any;
470
- renderProps(): any;
471
- readonly rendererType: any;
472
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
473
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
474
- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
475
- regionCannotBeRendered(): undefined;
476
- } & {
477
- setError(error?: unknown): void;
478
- setRpcDriverName(rpcDriverName: string): void;
479
- reload(): void;
480
- } & {
481
- currBpPerPx: number;
482
- message: string;
483
- featureIdUnderMouse: string | undefined;
484
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
485
- scrollTop: number;
486
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
487
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
488
- } & {
489
- readonly blockType: "staticBlocks" | "dynamicBlocks";
490
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
491
- } & {
492
- readonly renderDelay: number;
493
- readonly TooltipComponent: import("react").FC<any>;
494
- readonly selectedFeatureId: string | undefined;
495
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
496
- } & {
497
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
498
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
499
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
500
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
501
- searchFeatureByID(id: string): [number, number, number, number] | undefined;
502
- readonly currentBytesRequested: number;
503
- readonly currentFeatureScreenDensity: number;
504
- readonly maxFeatureScreenDensity: any;
505
- readonly estimatedStatsReady: boolean;
506
- readonly maxAllowableBytes: number;
507
- } & {
508
- setMessage(message: string): void;
509
- afterAttach(): void;
510
- estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
511
- headers?: Record<string, string> | undefined;
512
- signal?: AbortSignal | undefined;
513
- filters?: string[] | undefined;
514
- }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
515
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
516
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
517
- clearRegionStats(): void;
518
- setHeight(displayHeight: number): number;
519
- resizeHeight(distance: number): number;
520
- setScrollTop(scrollTop: number): void;
521
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
522
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
523
- setCurrBpPerPx(n: number): void;
524
- deleteBlock(key: string): void;
525
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
526
- clearFeatureSelection(): void;
527
- setFeatureIdUnderMouse(feature: string | undefined): void;
528
- reload(): void;
529
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
530
- } & {
531
- readonly regionTooLarge: boolean;
532
- readonly regionTooLargeReason: string;
533
- } & {
534
- reload(): Promise<void>;
535
- afterAttach(): void;
536
- } & {
537
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
538
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
539
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
540
- contextMenuItems(): {
541
- label: string;
542
- icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
543
- onClick: () => void;
544
- }[];
545
- renderProps(): any;
546
- } & {
547
- renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
548
- overrideHeight: number;
549
- }): Promise<JSX.Element>;
550
- }, import("mobx-state-tree")._NotCustomized, {
551
- id: string;
552
- type: string;
553
- rpcDriverName: string | undefined;
554
- height: number;
555
- userBpPerPxLimit: number | undefined;
556
- userByteSizeLimit: number | undefined;
557
- }>;
558
- baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
559
- };
560
- install(pluginManager: PluginManager): void;
561
- configure(pluginManager: PluginManager): void;
562
- }
563
- export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, };
564
- export type { LinearGenomeViewModel, LinearGenomeViewStateModel, BlockModel };
565
- export type { BaseLinearDisplayModel } from './BaseLinearDisplay';
1
+ /// <reference types="react" />
2
+ import Plugin from '@jbrowse/core/Plugin';
3
+ import PluginManager from '@jbrowse/core/PluginManager';
4
+ import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigSchema, BlockModel } from './BaseLinearDisplay';
5
+ import { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
6
+ import { LinearGenomeViewModel, LinearGenomeViewStateModel, renderToSvg, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
7
+ import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory } from './LinearBasicDisplay';
8
+ export default class LinearGenomeViewPlugin extends Plugin {
9
+ name: string;
10
+ exports: {
11
+ BaseLinearDisplayComponent: (props: {
12
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
13
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
14
+ type: import("mobx-state-tree").ISimpleType<string>;
15
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
16
+ } & {
17
+ height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
18
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
19
+ key: import("mobx-state-tree").ISimpleType<string>;
20
+ region: import("mobx-state-tree").IModelType<{
21
+ refName: import("mobx-state-tree").ISimpleType<string>;
22
+ start: import("mobx-state-tree").ISimpleType<number>;
23
+ end: import("mobx-state-tree").ISimpleType<number>;
24
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
25
+ } & {
26
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
27
+ }, {
28
+ setRefName(newRefName: string): void;
29
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
30
+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
31
+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
32
+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
33
+ }, {
34
+ renderInProgress: AbortController | undefined;
35
+ filled: boolean;
36
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
37
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
38
+ layout: any;
39
+ status: string;
40
+ error: unknown;
41
+ message: string | undefined;
42
+ maxHeightReached: boolean;
43
+ ReactComponent: ({ model, }: {
44
+ model: any;
45
+ }) => any;
46
+ renderProps: any;
47
+ } & {
48
+ doReload(): void;
49
+ afterAttach(): void;
50
+ setStatus(message: string): void;
51
+ setLoading(abortController: AbortController): void;
52
+ setMessage(messageText: string): void;
53
+ setRendered(props: {
54
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
55
+ features: Map<string, import("@jbrowse/core/util").Feature>;
56
+ layout: any;
57
+ maxHeightReached: boolean;
58
+ renderProps: any;
59
+ } | undefined): void;
60
+ setError(error: unknown): void;
61
+ reload(): void;
62
+ beforeDestroy(): void;
63
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
64
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
65
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
66
+ }> & {
67
+ rendererTypeName: string;
68
+ error: unknown;
69
+ } & {
70
+ readonly RenderingComponent: import("react").FC<{
71
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
72
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
73
+ type: import("mobx-state-tree").ISimpleType<string>;
74
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
75
+ }> & {
76
+ rendererTypeName: string;
77
+ error: unknown;
78
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
79
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
80
+ type: import("mobx-state-tree").ISimpleType<string>;
81
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
82
+ }, {
83
+ rendererTypeName: string;
84
+ error: unknown;
85
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
86
+ onHorizontalScroll?: Function | undefined;
87
+ blockState?: Record<string, any> | undefined;
88
+ }>;
89
+ readonly DisplayBlurb: import("react").FC<{
90
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
91
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
92
+ type: import("mobx-state-tree").ISimpleType<string>;
93
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
94
+ }> & {
95
+ rendererTypeName: string;
96
+ error: unknown;
97
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
98
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
99
+ type: import("mobx-state-tree").ISimpleType<string>;
100
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
101
+ }, {
102
+ rendererTypeName: string;
103
+ error: unknown;
104
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
105
+ }> | null;
106
+ readonly adapterConfig: any;
107
+ readonly parentTrack: any;
108
+ renderProps(): any;
109
+ readonly rendererType: any;
110
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
111
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
112
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
113
+ regionCannotBeRendered(): undefined;
114
+ } & {
115
+ setError(error?: unknown): void;
116
+ setRpcDriverName(rpcDriverName: string): void;
117
+ reload(): void;
118
+ } & {
119
+ currBpPerPx: number;
120
+ message: string;
121
+ featureIdUnderMouse: string | undefined;
122
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
123
+ scrollTop: number;
124
+ estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
125
+ estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
126
+ } & {
127
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
128
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
129
+ } & {
130
+ readonly renderDelay: number;
131
+ readonly TooltipComponent: import("react").FC<any>;
132
+ readonly selectedFeatureId: string | undefined;
133
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
134
+ } & {
135
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
136
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
137
+ getFeatureOverlapping(blockKey: string, x: number, y: number): any;
138
+ getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
139
+ searchFeatureByID(id: string): [number, number, number, number] | undefined;
140
+ readonly currentBytesRequested: number;
141
+ readonly currentFeatureScreenDensity: number;
142
+ readonly maxFeatureScreenDensity: any;
143
+ readonly estimatedStatsReady: boolean;
144
+ readonly maxAllowableBytes: number;
145
+ } & {
146
+ setMessage(message: string): void;
147
+ afterAttach(): void;
148
+ estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
149
+ headers?: Record<string, string> | undefined;
150
+ signal?: AbortSignal | undefined;
151
+ filters?: string[] | undefined;
152
+ }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
153
+ setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
154
+ setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
155
+ clearRegionStats(): void;
156
+ setHeight(displayHeight: number): number;
157
+ resizeHeight(distance: number): number;
158
+ setScrollTop(scrollTop: number): void;
159
+ updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
160
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
161
+ setCurrBpPerPx(n: number): void;
162
+ deleteBlock(key: string): void;
163
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
164
+ clearFeatureSelection(): void;
165
+ setFeatureIdUnderMouse(feature: string | undefined): void;
166
+ reload(): void;
167
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
168
+ } & {
169
+ readonly regionTooLarge: boolean;
170
+ readonly regionTooLargeReason: string;
171
+ } & {
172
+ reload(): Promise<void>;
173
+ afterAttach(): void;
174
+ } & {
175
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
176
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
177
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
178
+ contextMenuItems(): {
179
+ label: string;
180
+ icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
181
+ onClick: () => void;
182
+ }[];
183
+ renderProps(): any;
184
+ } & {
185
+ renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
186
+ overrideHeight: number;
187
+ }): Promise<JSX.Element>;
188
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
189
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
190
+ type: import("mobx-state-tree").ISimpleType<string>;
191
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
192
+ } & {
193
+ height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
194
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
195
+ key: import("mobx-state-tree").ISimpleType<string>;
196
+ region: import("mobx-state-tree").IModelType<{
197
+ refName: import("mobx-state-tree").ISimpleType<string>;
198
+ start: import("mobx-state-tree").ISimpleType<number>;
199
+ end: import("mobx-state-tree").ISimpleType<number>;
200
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
201
+ } & {
202
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
203
+ }, {
204
+ setRefName(newRefName: string): void;
205
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
206
+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
207
+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
208
+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
209
+ }, {
210
+ renderInProgress: AbortController | undefined;
211
+ filled: boolean;
212
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
213
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
214
+ layout: any;
215
+ status: string;
216
+ error: unknown;
217
+ message: string | undefined;
218
+ maxHeightReached: boolean;
219
+ ReactComponent: ({ model, }: {
220
+ model: any;
221
+ }) => any;
222
+ renderProps: any;
223
+ } & {
224
+ doReload(): void;
225
+ afterAttach(): void;
226
+ setStatus(message: string): void;
227
+ setLoading(abortController: AbortController): void;
228
+ setMessage(messageText: string): void;
229
+ setRendered(props: {
230
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
231
+ features: Map<string, import("@jbrowse/core/util").Feature>;
232
+ layout: any;
233
+ maxHeightReached: boolean;
234
+ renderProps: any;
235
+ } | undefined): void;
236
+ setError(error: unknown): void;
237
+ reload(): void;
238
+ beforeDestroy(): void;
239
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
240
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
241
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
242
+ }, {
243
+ rendererTypeName: string;
244
+ error: unknown;
245
+ } & {
246
+ readonly RenderingComponent: import("react").FC<{
247
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
248
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
249
+ type: import("mobx-state-tree").ISimpleType<string>;
250
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
251
+ }> & {
252
+ rendererTypeName: string;
253
+ error: unknown;
254
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
255
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
256
+ type: import("mobx-state-tree").ISimpleType<string>;
257
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
258
+ }, {
259
+ rendererTypeName: string;
260
+ error: unknown;
261
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
262
+ onHorizontalScroll?: Function | undefined;
263
+ blockState?: Record<string, any> | undefined;
264
+ }>;
265
+ readonly DisplayBlurb: import("react").FC<{
266
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
267
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
268
+ type: import("mobx-state-tree").ISimpleType<string>;
269
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
270
+ }> & {
271
+ rendererTypeName: string;
272
+ error: unknown;
273
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
274
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
275
+ type: import("mobx-state-tree").ISimpleType<string>;
276
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
277
+ }, {
278
+ rendererTypeName: string;
279
+ error: unknown;
280
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
281
+ }> | null;
282
+ readonly adapterConfig: any;
283
+ readonly parentTrack: any;
284
+ renderProps(): any;
285
+ readonly rendererType: any;
286
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
287
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
288
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
289
+ regionCannotBeRendered(): undefined;
290
+ } & {
291
+ setError(error?: unknown): void;
292
+ setRpcDriverName(rpcDriverName: string): void;
293
+ reload(): void;
294
+ } & {
295
+ currBpPerPx: number;
296
+ message: string;
297
+ featureIdUnderMouse: string | undefined;
298
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
299
+ scrollTop: number;
300
+ estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
301
+ estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
302
+ } & {
303
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
304
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
305
+ } & {
306
+ readonly renderDelay: number;
307
+ readonly TooltipComponent: import("react").FC<any>;
308
+ readonly selectedFeatureId: string | undefined;
309
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
310
+ } & {
311
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
312
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
313
+ getFeatureOverlapping(blockKey: string, x: number, y: number): any;
314
+ getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
315
+ searchFeatureByID(id: string): [number, number, number, number] | undefined;
316
+ readonly currentBytesRequested: number;
317
+ readonly currentFeatureScreenDensity: number;
318
+ readonly maxFeatureScreenDensity: any;
319
+ readonly estimatedStatsReady: boolean;
320
+ readonly maxAllowableBytes: number;
321
+ } & {
322
+ setMessage(message: string): void;
323
+ afterAttach(): void;
324
+ estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
325
+ headers?: Record<string, string> | undefined;
326
+ signal?: AbortSignal | undefined;
327
+ filters?: string[] | undefined;
328
+ }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
329
+ setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
330
+ setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
331
+ clearRegionStats(): void;
332
+ setHeight(displayHeight: number): number;
333
+ resizeHeight(distance: number): number;
334
+ setScrollTop(scrollTop: number): void;
335
+ updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
336
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
337
+ setCurrBpPerPx(n: number): void;
338
+ deleteBlock(key: string): void;
339
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
340
+ clearFeatureSelection(): void;
341
+ setFeatureIdUnderMouse(feature: string | undefined): void;
342
+ reload(): void;
343
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
344
+ } & {
345
+ readonly regionTooLarge: boolean;
346
+ readonly regionTooLargeReason: string;
347
+ } & {
348
+ reload(): Promise<void>;
349
+ afterAttach(): void;
350
+ } & {
351
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
352
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
353
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
354
+ contextMenuItems(): {
355
+ label: string;
356
+ icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
357
+ onClick: () => void;
358
+ }[];
359
+ renderProps(): any;
360
+ } & {
361
+ renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
362
+ overrideHeight: number;
363
+ }): Promise<JSX.Element>;
364
+ }, import("mobx-state-tree")._NotCustomized, {
365
+ id: string;
366
+ type: string;
367
+ rpcDriverName: string | undefined;
368
+ height: number;
369
+ userBpPerPxLimit: number | undefined;
370
+ userByteSizeLimit: number | undefined;
371
+ }>>;
372
+ children?: import("react").ReactNode;
373
+ }) => JSX.Element;
374
+ BaseLinearDisplay: import("mobx-state-tree").IModelType<{
375
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
376
+ type: import("mobx-state-tree").ISimpleType<string>;
377
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
378
+ } & {
379
+ height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
380
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
381
+ key: import("mobx-state-tree").ISimpleType<string>;
382
+ region: import("mobx-state-tree").IModelType<{
383
+ refName: import("mobx-state-tree").ISimpleType<string>;
384
+ start: import("mobx-state-tree").ISimpleType<number>;
385
+ end: import("mobx-state-tree").ISimpleType<number>;
386
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
387
+ } & {
388
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
389
+ }, {
390
+ setRefName(newRefName: string): void;
391
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
392
+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
393
+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
394
+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
395
+ }, {
396
+ renderInProgress: AbortController | undefined;
397
+ filled: boolean;
398
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
399
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
400
+ layout: any;
401
+ status: string;
402
+ error: unknown;
403
+ message: string | undefined;
404
+ maxHeightReached: boolean;
405
+ ReactComponent: ({ model, }: {
406
+ model: any;
407
+ }) => any;
408
+ renderProps: any;
409
+ } & {
410
+ doReload(): void;
411
+ afterAttach(): void;
412
+ setStatus(message: string): void;
413
+ setLoading(abortController: AbortController): void;
414
+ setMessage(messageText: string): void;
415
+ setRendered(props: {
416
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
417
+ features: Map<string, import("@jbrowse/core/util").Feature>;
418
+ layout: any;
419
+ maxHeightReached: boolean;
420
+ renderProps: any;
421
+ } | undefined): void;
422
+ setError(error: unknown): void;
423
+ reload(): void;
424
+ beforeDestroy(): void;
425
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
426
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
427
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
428
+ }, {
429
+ rendererTypeName: string;
430
+ error: unknown;
431
+ } & {
432
+ readonly RenderingComponent: import("react").FC<{
433
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
434
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
435
+ type: import("mobx-state-tree").ISimpleType<string>;
436
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
437
+ }> & {
438
+ rendererTypeName: string;
439
+ error: unknown;
440
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
441
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
442
+ type: import("mobx-state-tree").ISimpleType<string>;
443
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
444
+ }, {
445
+ rendererTypeName: string;
446
+ error: unknown;
447
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
448
+ onHorizontalScroll?: Function | undefined;
449
+ blockState?: Record<string, any> | undefined;
450
+ }>;
451
+ readonly DisplayBlurb: import("react").FC<{
452
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
453
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
454
+ type: import("mobx-state-tree").ISimpleType<string>;
455
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
456
+ }> & {
457
+ rendererTypeName: string;
458
+ error: unknown;
459
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
460
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
461
+ type: import("mobx-state-tree").ISimpleType<string>;
462
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
463
+ }, {
464
+ rendererTypeName: string;
465
+ error: unknown;
466
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
467
+ }> | null;
468
+ readonly adapterConfig: any;
469
+ readonly parentTrack: any;
470
+ renderProps(): any;
471
+ readonly rendererType: any;
472
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
473
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
474
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
475
+ regionCannotBeRendered(): undefined;
476
+ } & {
477
+ setError(error?: unknown): void;
478
+ setRpcDriverName(rpcDriverName: string): void;
479
+ reload(): void;
480
+ } & {
481
+ currBpPerPx: number;
482
+ message: string;
483
+ featureIdUnderMouse: string | undefined;
484
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
485
+ scrollTop: number;
486
+ estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
487
+ estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
488
+ } & {
489
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
490
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
491
+ } & {
492
+ readonly renderDelay: number;
493
+ readonly TooltipComponent: import("react").FC<any>;
494
+ readonly selectedFeatureId: string | undefined;
495
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
496
+ } & {
497
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
498
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
499
+ getFeatureOverlapping(blockKey: string, x: number, y: number): any;
500
+ getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
501
+ searchFeatureByID(id: string): [number, number, number, number] | undefined;
502
+ readonly currentBytesRequested: number;
503
+ readonly currentFeatureScreenDensity: number;
504
+ readonly maxFeatureScreenDensity: any;
505
+ readonly estimatedStatsReady: boolean;
506
+ readonly maxAllowableBytes: number;
507
+ } & {
508
+ setMessage(message: string): void;
509
+ afterAttach(): void;
510
+ estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
511
+ headers?: Record<string, string> | undefined;
512
+ signal?: AbortSignal | undefined;
513
+ filters?: string[] | undefined;
514
+ }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
515
+ setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
516
+ setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
517
+ clearRegionStats(): void;
518
+ setHeight(displayHeight: number): number;
519
+ resizeHeight(distance: number): number;
520
+ setScrollTop(scrollTop: number): void;
521
+ updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
522
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
523
+ setCurrBpPerPx(n: number): void;
524
+ deleteBlock(key: string): void;
525
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
526
+ clearFeatureSelection(): void;
527
+ setFeatureIdUnderMouse(feature: string | undefined): void;
528
+ reload(): void;
529
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
530
+ } & {
531
+ readonly regionTooLarge: boolean;
532
+ readonly regionTooLargeReason: string;
533
+ } & {
534
+ reload(): Promise<void>;
535
+ afterAttach(): void;
536
+ } & {
537
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
538
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
539
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
540
+ contextMenuItems(): {
541
+ label: string;
542
+ icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
543
+ onClick: () => void;
544
+ }[];
545
+ renderProps(): any;
546
+ } & {
547
+ renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
548
+ overrideHeight: number;
549
+ }): Promise<JSX.Element>;
550
+ }, import("mobx-state-tree")._NotCustomized, {
551
+ id: string;
552
+ type: string;
553
+ rpcDriverName: string | undefined;
554
+ height: number;
555
+ userBpPerPxLimit: number | undefined;
556
+ userByteSizeLimit: number | undefined;
557
+ }>;
558
+ baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
559
+ };
560
+ install(pluginManager: PluginManager): void;
561
+ configure(pluginManager: PluginManager): void;
562
+ }
563
+ export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, };
564
+ export type { LinearGenomeViewModel, LinearGenomeViewStateModel, BlockModel };
565
+ export type { BaseLinearDisplayModel } from './BaseLinearDisplay';