@jbrowse/plugin-linear-genome-view 1.6.9 → 1.7.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +232 -0
- package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
- package/dist/BaseLinearDisplay/components/Block.js +86 -0
- package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
- package/dist/BaseLinearDisplay/components/LinearBlocks.js +110 -0
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +192 -0
- package/dist/BaseLinearDisplay/index.d.ts +5 -5
- package/dist/BaseLinearDisplay/index.js +41 -0
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +763 -0
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +24 -0
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +328 -0
- package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
- package/dist/LinearBareDisplay/configSchema.js +19 -0
- package/dist/LinearBareDisplay/index.d.ts +2 -2
- package/dist/LinearBareDisplay/index.js +21 -0
- package/dist/LinearBareDisplay/index.test.js +33 -0
- package/dist/LinearBareDisplay/model.d.ts +192 -192
- package/dist/LinearBareDisplay/model.js +44 -0
- package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js +94 -0
- package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
- package/dist/LinearBasicDisplay/configSchema.js +25 -0
- package/dist/LinearBasicDisplay/index.d.ts +2 -2
- package/dist/LinearBasicDisplay/index.js +23 -0
- package/dist/LinearBasicDisplay/model.d.ts +213 -213
- package/dist/LinearBasicDisplay/model.js +162 -0
- package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
- package/dist/LinearGenomeView/components/CenterLine.js +80 -0
- package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +137 -0
- package/dist/LinearGenomeView/components/Header.d.ts +7 -7
- package/dist/LinearGenomeView/components/Header.js +144 -0
- package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
- package/dist/LinearGenomeView/components/HelpDialog.js +48 -0
- package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
- package/dist/LinearGenomeView/components/ImportForm.js +330 -0
- package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
- package/dist/LinearGenomeView/components/LinearGenomeView.js +129 -0
- package/dist/LinearGenomeView/components/LinearGenomeView.test.js +234 -0
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +349 -0
- package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
- package/dist/LinearGenomeView/components/MiniControls.js +83 -0
- package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
- package/dist/LinearGenomeView/components/OverviewRubberBand.js +310 -0
- package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
- package/dist/LinearGenomeView/components/OverviewScaleBar.js +403 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +331 -0
- package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
- package/dist/LinearGenomeView/components/RubberBand.js +309 -0
- package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
- package/dist/LinearGenomeView/components/Ruler.js +101 -0
- package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
- package/dist/LinearGenomeView/components/ScaleBar.js +184 -0
- package/dist/LinearGenomeView/components/ScaleBar.test.js +180 -0
- package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
- package/dist/LinearGenomeView/components/SearchBox.js +201 -0
- package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +159 -0
- package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
- package/dist/LinearGenomeView/components/SequenceDialog.js +304 -0
- package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
- package/dist/LinearGenomeView/components/TrackContainer.js +179 -0
- package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
- package/dist/LinearGenomeView/components/TrackLabel.js +165 -0
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
- package/dist/LinearGenomeView/components/TracksContainer.js +214 -0
- package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
- package/dist/LinearGenomeView/components/VerticalGuides.js +116 -0
- package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
- package/dist/LinearGenomeView/components/ZoomControls.js +92 -0
- package/dist/LinearGenomeView/components/util.d.ts +2 -2
- package/dist/LinearGenomeView/components/util.js +16 -0
- package/dist/LinearGenomeView/index.d.ts +292 -292
- package/dist/LinearGenomeView/index.js +1418 -0
- package/dist/LinearGenomeView/index.test.js +1170 -0
- package/dist/LinearGenomeView/util.d.ts +14 -14
- package/dist/LinearGenomeView/util.js +93 -0
- package/dist/LinearGenomeView/util.test.js +78 -0
- package/dist/index.d.ts +565 -565
- package/dist/index.js +293 -6
- package/package.json +6 -9
- package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +2 -0
- package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +10 -8
- package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +1 -1
- package/src/LinearBasicDisplay/model.ts +17 -18
- package/src/LinearGenomeView/components/Header.tsx +1 -1
- package/src/LinearGenomeView/components/ImportForm.tsx +10 -4
- package/src/LinearGenomeView/components/LinearGenomeView.test.js +1 -0
- package/src/LinearGenomeView/components/OverviewScaleBar.tsx +2 -2
- package/src/LinearGenomeView/components/RubberBand.tsx +14 -24
- package/src/LinearGenomeView/components/ScaleBar.test.tsx +1 -0
- package/src/LinearGenomeView/components/ScaleBar.tsx +3 -6
- package/src/LinearGenomeView/components/SequenceDialog.tsx +1 -1
- package/src/LinearGenomeView/components/TrackLabel.tsx +1 -1
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +0 -4
- package/src/LinearGenomeView/index.tsx +2 -3
- package/dist/LinearBareDisplay/index.test.d.ts +0 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
- package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
- package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
- package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
- package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
- package/dist/plugin-linear-genome-view.esm.js +0 -8105
- package/dist/plugin-linear-genome-view.esm.js.map +0 -1
package/dist/index.d.ts
CHANGED
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/// <reference types="react" />
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import Plugin from '@jbrowse/core/Plugin';
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import PluginManager from '@jbrowse/core/PluginManager';
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import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigSchema, BlockModel } from './BaseLinearDisplay';
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import { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
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import { LinearGenomeViewModel, LinearGenomeViewStateModel, renderToSvg, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
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import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory } from './LinearBasicDisplay';
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export default class LinearGenomeViewPlugin extends Plugin {
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name: string;
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exports: {
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BaseLinearDisplayComponent: (props: {
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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key: import("mobx-state-tree").ISimpleType<string>;
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region: import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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renderInProgress: AbortController | undefined;
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filled: boolean;
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reactElement: import("react").ReactElement<any, string |
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features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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layout: any;
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status: string;
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error: unknown;
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message: string | undefined;
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maxHeightReached: boolean;
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ReactComponent: ({ model, }: {
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model: any;
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}) => any;
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renderProps: any;
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} & {
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doReload(): void;
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afterAttach(): void;
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setStatus(message: string): void;
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setLoading(abortController: AbortController): void;
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setMessage(messageText: string): void;
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setRendered(props: {
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reactElement: import("react").ReactElement<any, string |
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features: Map<string, import("@jbrowse/core/util").Feature>;
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layout: any;
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maxHeightReached: boolean;
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renderProps: any;
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} | undefined): void;
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setError(error: unknown): void;
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reload(): void;
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beforeDestroy(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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}> & {
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rendererTypeName: string;
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error: unknown;
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} & {
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readonly RenderingComponent: import("react").FC<{
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}> & {
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rendererTypeName: string;
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error: unknown;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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onHorizontalScroll?: Function | undefined;
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blockState?: Record<string, any> | undefined;
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}>;
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readonly DisplayBlurb: import("react").FC<{
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}> & {
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rendererTypeName: string;
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error: unknown;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}> | null;
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readonly adapterConfig: any;
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readonly parentTrack: any;
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renderProps(): any;
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readonly rendererType: any;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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regionCannotBeRendered(): undefined;
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} & {
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setError(error?: unknown): void;
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setRpcDriverName(rpcDriverName: string): void;
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reload(): void;
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} & {
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currBpPerPx: number;
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message: string;
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featureIdUnderMouse: string | undefined;
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contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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scrollTop: number;
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estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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} & {
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readonly blockType: "staticBlocks" | "dynamicBlocks";
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readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
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} & {
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readonly renderDelay: number;
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readonly TooltipComponent: import("react").FC<any>;
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readonly selectedFeatureId: string | undefined;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
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getFeatureOverlapping(blockKey: string, x: number, y: number): any;
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getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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searchFeatureByID(id: string): [number, number, number, number] | undefined;
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readonly currentBytesRequested: number;
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readonly currentFeatureScreenDensity: number;
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readonly maxFeatureScreenDensity: any;
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readonly estimatedStatsReady: boolean;
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readonly maxAllowableBytes: number;
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} & {
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setMessage(message: string): void;
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afterAttach(): void;
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estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
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headers?: Record<string, string> | undefined;
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signal?: AbortSignal | undefined;
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filters?: string[] | undefined;
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}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
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setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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clearRegionStats(): void;
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setHeight(displayHeight: number): number;
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resizeHeight(distance: number): number;
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setScrollTop(scrollTop: number): void;
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updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
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addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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setCurrBpPerPx(n: number): void;
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deleteBlock(key: string): void;
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selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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clearFeatureSelection(): void;
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setFeatureIdUnderMouse(feature: string | undefined): void;
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reload(): void;
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setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
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} & {
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readonly regionTooLarge: boolean;
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readonly regionTooLargeReason: string;
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} & {
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reload(): Promise<void>;
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afterAttach(): void;
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} & {
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regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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contextMenuItems(): {
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label: string;
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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} | undefined): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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}, {
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} & {
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readonly RenderingComponent: import("react").FC<{
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}> & {
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rendererTypeName: string;
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error: unknown;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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onHorizontalScroll?: Function | undefined;
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}>;
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readonly DisplayBlurb: import("react").FC<{
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}> & {
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rendererTypeName: string;
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error: unknown;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}> | null;
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|
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readonly adapterConfig: any;
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283
|
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readonly parentTrack: any;
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renderProps(): any;
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|
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readonly rendererType: any;
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286
|
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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287
|
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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288
|
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readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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|
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regionCannotBeRendered(): undefined;
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290
|
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} & {
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291
|
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setError(error?: unknown): void;
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292
|
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setRpcDriverName(rpcDriverName: string): void;
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293
|
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reload(): void;
|
|
294
|
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} & {
|
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295
|
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currBpPerPx: number;
|
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296
|
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message: string;
|
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297
|
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featureIdUnderMouse: string | undefined;
|
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298
|
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contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
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299
|
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scrollTop: number;
|
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300
|
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estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
|
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301
|
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estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
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302
|
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} & {
|
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303
|
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readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
304
|
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readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
305
|
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} & {
|
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306
|
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readonly renderDelay: number;
|
|
307
|
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readonly TooltipComponent: import("react").FC<any>;
|
|
308
|
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readonly selectedFeatureId: string | undefined;
|
|
309
|
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
310
|
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} & {
|
|
311
|
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
312
|
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readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
313
|
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getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
|
314
|
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getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
315
|
-
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
316
|
-
readonly currentBytesRequested: number;
|
|
317
|
-
readonly currentFeatureScreenDensity: number;
|
|
318
|
-
readonly maxFeatureScreenDensity: any;
|
|
319
|
-
readonly estimatedStatsReady: boolean;
|
|
320
|
-
readonly maxAllowableBytes: number;
|
|
321
|
-
} & {
|
|
322
|
-
setMessage(message: string): void;
|
|
323
|
-
afterAttach(): void;
|
|
324
|
-
estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
|
|
325
|
-
headers?: Record<string, string> | undefined;
|
|
326
|
-
signal?: AbortSignal | undefined;
|
|
327
|
-
filters?: string[] | undefined;
|
|
328
|
-
}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
|
|
329
|
-
setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
|
|
330
|
-
setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
|
|
331
|
-
clearRegionStats(): void;
|
|
332
|
-
setHeight(displayHeight: number): number;
|
|
333
|
-
resizeHeight(distance: number): number;
|
|
334
|
-
setScrollTop(scrollTop: number): void;
|
|
335
|
-
updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
|
|
336
|
-
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
337
|
-
setCurrBpPerPx(n: number): void;
|
|
338
|
-
deleteBlock(key: string): void;
|
|
339
|
-
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
340
|
-
clearFeatureSelection(): void;
|
|
341
|
-
setFeatureIdUnderMouse(feature: string | undefined): void;
|
|
342
|
-
reload(): void;
|
|
343
|
-
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
344
|
-
} & {
|
|
345
|
-
readonly regionTooLarge: boolean;
|
|
346
|
-
readonly regionTooLargeReason: string;
|
|
347
|
-
} & {
|
|
348
|
-
reload(): Promise<void>;
|
|
349
|
-
afterAttach(): void;
|
|
350
|
-
} & {
|
|
351
|
-
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
352
|
-
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
|
|
353
|
-
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
354
|
-
contextMenuItems(): {
|
|
355
|
-
label: string;
|
|
356
|
-
icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
|
|
357
|
-
onClick: () => void;
|
|
358
|
-
}[];
|
|
359
|
-
renderProps(): any;
|
|
360
|
-
} & {
|
|
361
|
-
renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
|
|
362
|
-
overrideHeight: number;
|
|
363
|
-
}): Promise<JSX.Element>;
|
|
364
|
-
}, import("mobx-state-tree")._NotCustomized, {
|
|
365
|
-
id: string;
|
|
366
|
-
type: string;
|
|
367
|
-
rpcDriverName: string | undefined;
|
|
368
|
-
height: number;
|
|
369
|
-
userBpPerPxLimit: number | undefined;
|
|
370
|
-
userByteSizeLimit: number | undefined;
|
|
371
|
-
}>>;
|
|
372
|
-
children?: import("react").ReactNode;
|
|
373
|
-
}) => JSX.Element;
|
|
374
|
-
BaseLinearDisplay: import("mobx-state-tree").IModelType<{
|
|
375
|
-
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
376
|
-
type: import("mobx-state-tree").ISimpleType<string>;
|
|
377
|
-
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
378
|
-
} & {
|
|
379
|
-
height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
380
|
-
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
381
|
-
key: import("mobx-state-tree").ISimpleType<string>;
|
|
382
|
-
region: import("mobx-state-tree").IModelType<{
|
|
383
|
-
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
384
|
-
start: import("mobx-state-tree").ISimpleType<number>;
|
|
385
|
-
end: import("mobx-state-tree").ISimpleType<number>;
|
|
386
|
-
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
387
|
-
} & {
|
|
388
|
-
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
|
389
|
-
}, {
|
|
390
|
-
setRefName(newRefName: string): void;
|
|
391
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
392
|
-
reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
393
|
-
isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
394
|
-
isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
395
|
-
}, {
|
|
396
|
-
renderInProgress: AbortController | undefined;
|
|
397
|
-
filled: boolean;
|
|
398
|
-
reactElement: import("react").ReactElement<any, string |
|
|
399
|
-
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
400
|
-
layout: any;
|
|
401
|
-
status: string;
|
|
402
|
-
error: unknown;
|
|
403
|
-
message: string | undefined;
|
|
404
|
-
maxHeightReached: boolean;
|
|
405
|
-
ReactComponent: ({ model, }: {
|
|
406
|
-
model: any;
|
|
407
|
-
}) => any;
|
|
408
|
-
renderProps: any;
|
|
409
|
-
} & {
|
|
410
|
-
doReload(): void;
|
|
411
|
-
afterAttach(): void;
|
|
412
|
-
setStatus(message: string): void;
|
|
413
|
-
setLoading(abortController: AbortController): void;
|
|
414
|
-
setMessage(messageText: string): void;
|
|
415
|
-
setRendered(props: {
|
|
416
|
-
reactElement: import("react").ReactElement<any, string |
|
|
417
|
-
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
418
|
-
layout: any;
|
|
419
|
-
maxHeightReached: boolean;
|
|
420
|
-
renderProps: any;
|
|
421
|
-
} | undefined): void;
|
|
422
|
-
setError(error: unknown): void;
|
|
423
|
-
reload(): void;
|
|
424
|
-
beforeDestroy(): void;
|
|
425
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
426
|
-
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
427
|
-
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
428
|
-
}, {
|
|
429
|
-
rendererTypeName: string;
|
|
430
|
-
error: unknown;
|
|
431
|
-
} & {
|
|
432
|
-
readonly RenderingComponent: import("react").FC<{
|
|
433
|
-
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
434
|
-
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
435
|
-
type: import("mobx-state-tree").ISimpleType<string>;
|
|
436
|
-
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
437
|
-
}> & {
|
|
438
|
-
rendererTypeName: string;
|
|
439
|
-
error: unknown;
|
|
440
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
441
|
-
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
442
|
-
type: import("mobx-state-tree").ISimpleType<string>;
|
|
443
|
-
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
444
|
-
}, {
|
|
445
|
-
rendererTypeName: string;
|
|
446
|
-
error: unknown;
|
|
447
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
448
|
-
onHorizontalScroll?: Function | undefined;
|
|
449
|
-
blockState?: Record<string, any> | undefined;
|
|
450
|
-
}>;
|
|
451
|
-
readonly DisplayBlurb: import("react").FC<{
|
|
452
|
-
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
453
|
-
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
454
|
-
type: import("mobx-state-tree").ISimpleType<string>;
|
|
455
|
-
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
456
|
-
}> & {
|
|
457
|
-
rendererTypeName: string;
|
|
458
|
-
error: unknown;
|
|
459
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
460
|
-
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
461
|
-
type: import("mobx-state-tree").ISimpleType<string>;
|
|
462
|
-
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
463
|
-
}, {
|
|
464
|
-
rendererTypeName: string;
|
|
465
|
-
error: unknown;
|
|
466
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
467
|
-
}> | null;
|
|
468
|
-
readonly adapterConfig: any;
|
|
469
|
-
readonly parentTrack: any;
|
|
470
|
-
renderProps(): any;
|
|
471
|
-
readonly rendererType: any;
|
|
472
|
-
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
473
|
-
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
474
|
-
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
475
|
-
regionCannotBeRendered(): undefined;
|
|
476
|
-
} & {
|
|
477
|
-
setError(error?: unknown): void;
|
|
478
|
-
setRpcDriverName(rpcDriverName: string): void;
|
|
479
|
-
reload(): void;
|
|
480
|
-
} & {
|
|
481
|
-
currBpPerPx: number;
|
|
482
|
-
message: string;
|
|
483
|
-
featureIdUnderMouse: string | undefined;
|
|
484
|
-
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
485
|
-
scrollTop: number;
|
|
486
|
-
estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
|
|
487
|
-
estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
|
488
|
-
} & {
|
|
489
|
-
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
490
|
-
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
491
|
-
} & {
|
|
492
|
-
readonly renderDelay: number;
|
|
493
|
-
readonly TooltipComponent: import("react").FC<any>;
|
|
494
|
-
readonly selectedFeatureId: string | undefined;
|
|
495
|
-
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
496
|
-
} & {
|
|
497
|
-
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
498
|
-
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
499
|
-
getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
|
500
|
-
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
501
|
-
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
502
|
-
readonly currentBytesRequested: number;
|
|
503
|
-
readonly currentFeatureScreenDensity: number;
|
|
504
|
-
readonly maxFeatureScreenDensity: any;
|
|
505
|
-
readonly estimatedStatsReady: boolean;
|
|
506
|
-
readonly maxAllowableBytes: number;
|
|
507
|
-
} & {
|
|
508
|
-
setMessage(message: string): void;
|
|
509
|
-
afterAttach(): void;
|
|
510
|
-
estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
|
|
511
|
-
headers?: Record<string, string> | undefined;
|
|
512
|
-
signal?: AbortSignal | undefined;
|
|
513
|
-
filters?: string[] | undefined;
|
|
514
|
-
}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
|
|
515
|
-
setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
|
|
516
|
-
setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
|
|
517
|
-
clearRegionStats(): void;
|
|
518
|
-
setHeight(displayHeight: number): number;
|
|
519
|
-
resizeHeight(distance: number): number;
|
|
520
|
-
setScrollTop(scrollTop: number): void;
|
|
521
|
-
updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
|
|
522
|
-
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
523
|
-
setCurrBpPerPx(n: number): void;
|
|
524
|
-
deleteBlock(key: string): void;
|
|
525
|
-
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
526
|
-
clearFeatureSelection(): void;
|
|
527
|
-
setFeatureIdUnderMouse(feature: string | undefined): void;
|
|
528
|
-
reload(): void;
|
|
529
|
-
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
530
|
-
} & {
|
|
531
|
-
readonly regionTooLarge: boolean;
|
|
532
|
-
readonly regionTooLargeReason: string;
|
|
533
|
-
} & {
|
|
534
|
-
reload(): Promise<void>;
|
|
535
|
-
afterAttach(): void;
|
|
536
|
-
} & {
|
|
537
|
-
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
538
|
-
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
|
|
539
|
-
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
540
|
-
contextMenuItems(): {
|
|
541
|
-
label: string;
|
|
542
|
-
icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
|
|
543
|
-
onClick: () => void;
|
|
544
|
-
}[];
|
|
545
|
-
renderProps(): any;
|
|
546
|
-
} & {
|
|
547
|
-
renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
|
|
548
|
-
overrideHeight: number;
|
|
549
|
-
}): Promise<JSX.Element>;
|
|
550
|
-
}, import("mobx-state-tree")._NotCustomized, {
|
|
551
|
-
id: string;
|
|
552
|
-
type: string;
|
|
553
|
-
rpcDriverName: string | undefined;
|
|
554
|
-
height: number;
|
|
555
|
-
userBpPerPxLimit: number | undefined;
|
|
556
|
-
userByteSizeLimit: number | undefined;
|
|
557
|
-
}>;
|
|
558
|
-
baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
559
|
-
};
|
|
560
|
-
install(pluginManager: PluginManager): void;
|
|
561
|
-
configure(pluginManager: PluginManager): void;
|
|
562
|
-
}
|
|
563
|
-
export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, };
|
|
564
|
-
export type { LinearGenomeViewModel, LinearGenomeViewStateModel, BlockModel };
|
|
565
|
-
export type { BaseLinearDisplayModel } from './BaseLinearDisplay';
|
|
1
|
+
/// <reference types="react" />
|
|
2
|
+
import Plugin from '@jbrowse/core/Plugin';
|
|
3
|
+
import PluginManager from '@jbrowse/core/PluginManager';
|
|
4
|
+
import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigSchema, BlockModel } from './BaseLinearDisplay';
|
|
5
|
+
import { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
|
|
6
|
+
import { LinearGenomeViewModel, LinearGenomeViewStateModel, renderToSvg, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
|
|
7
|
+
import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory } from './LinearBasicDisplay';
|
|
8
|
+
export default class LinearGenomeViewPlugin extends Plugin {
|
|
9
|
+
name: string;
|
|
10
|
+
exports: {
|
|
11
|
+
BaseLinearDisplayComponent: (props: {
|
|
12
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
13
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
14
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
15
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
16
|
+
} & {
|
|
17
|
+
height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
18
|
+
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
19
|
+
key: import("mobx-state-tree").ISimpleType<string>;
|
|
20
|
+
region: import("mobx-state-tree").IModelType<{
|
|
21
|
+
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
22
|
+
start: import("mobx-state-tree").ISimpleType<number>;
|
|
23
|
+
end: import("mobx-state-tree").ISimpleType<number>;
|
|
24
|
+
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
25
|
+
} & {
|
|
26
|
+
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
|
27
|
+
}, {
|
|
28
|
+
setRefName(newRefName: string): void;
|
|
29
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
30
|
+
reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
31
|
+
isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
32
|
+
isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
33
|
+
}, {
|
|
34
|
+
renderInProgress: AbortController | undefined;
|
|
35
|
+
filled: boolean;
|
|
36
|
+
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
|
37
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
38
|
+
layout: any;
|
|
39
|
+
status: string;
|
|
40
|
+
error: unknown;
|
|
41
|
+
message: string | undefined;
|
|
42
|
+
maxHeightReached: boolean;
|
|
43
|
+
ReactComponent: ({ model, }: {
|
|
44
|
+
model: any;
|
|
45
|
+
}) => any;
|
|
46
|
+
renderProps: any;
|
|
47
|
+
} & {
|
|
48
|
+
doReload(): void;
|
|
49
|
+
afterAttach(): void;
|
|
50
|
+
setStatus(message: string): void;
|
|
51
|
+
setLoading(abortController: AbortController): void;
|
|
52
|
+
setMessage(messageText: string): void;
|
|
53
|
+
setRendered(props: {
|
|
54
|
+
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
|
|
55
|
+
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
56
|
+
layout: any;
|
|
57
|
+
maxHeightReached: boolean;
|
|
58
|
+
renderProps: any;
|
|
59
|
+
} | undefined): void;
|
|
60
|
+
setError(error: unknown): void;
|
|
61
|
+
reload(): void;
|
|
62
|
+
beforeDestroy(): void;
|
|
63
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
64
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
65
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
66
|
+
}> & {
|
|
67
|
+
rendererTypeName: string;
|
|
68
|
+
error: unknown;
|
|
69
|
+
} & {
|
|
70
|
+
readonly RenderingComponent: import("react").FC<{
|
|
71
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
72
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
73
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
74
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
75
|
+
}> & {
|
|
76
|
+
rendererTypeName: string;
|
|
77
|
+
error: unknown;
|
|
78
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
79
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
80
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
81
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
82
|
+
}, {
|
|
83
|
+
rendererTypeName: string;
|
|
84
|
+
error: unknown;
|
|
85
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
86
|
+
onHorizontalScroll?: Function | undefined;
|
|
87
|
+
blockState?: Record<string, any> | undefined;
|
|
88
|
+
}>;
|
|
89
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
90
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
91
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
92
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
93
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
94
|
+
}> & {
|
|
95
|
+
rendererTypeName: string;
|
|
96
|
+
error: unknown;
|
|
97
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
98
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
99
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
100
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
101
|
+
}, {
|
|
102
|
+
rendererTypeName: string;
|
|
103
|
+
error: unknown;
|
|
104
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
105
|
+
}> | null;
|
|
106
|
+
readonly adapterConfig: any;
|
|
107
|
+
readonly parentTrack: any;
|
|
108
|
+
renderProps(): any;
|
|
109
|
+
readonly rendererType: any;
|
|
110
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
111
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
112
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
113
|
+
regionCannotBeRendered(): undefined;
|
|
114
|
+
} & {
|
|
115
|
+
setError(error?: unknown): void;
|
|
116
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
117
|
+
reload(): void;
|
|
118
|
+
} & {
|
|
119
|
+
currBpPerPx: number;
|
|
120
|
+
message: string;
|
|
121
|
+
featureIdUnderMouse: string | undefined;
|
|
122
|
+
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
123
|
+
scrollTop: number;
|
|
124
|
+
estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
|
|
125
|
+
estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
|
126
|
+
} & {
|
|
127
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
128
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
129
|
+
} & {
|
|
130
|
+
readonly renderDelay: number;
|
|
131
|
+
readonly TooltipComponent: import("react").FC<any>;
|
|
132
|
+
readonly selectedFeatureId: string | undefined;
|
|
133
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
134
|
+
} & {
|
|
135
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
136
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
137
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
|
138
|
+
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
139
|
+
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
140
|
+
readonly currentBytesRequested: number;
|
|
141
|
+
readonly currentFeatureScreenDensity: number;
|
|
142
|
+
readonly maxFeatureScreenDensity: any;
|
|
143
|
+
readonly estimatedStatsReady: boolean;
|
|
144
|
+
readonly maxAllowableBytes: number;
|
|
145
|
+
} & {
|
|
146
|
+
setMessage(message: string): void;
|
|
147
|
+
afterAttach(): void;
|
|
148
|
+
estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
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headers?: Record<string, string> | undefined;
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150
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signal?: AbortSignal | undefined;
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151
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filters?: string[] | undefined;
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}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
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setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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154
|
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setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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155
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clearRegionStats(): void;
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156
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+
setHeight(displayHeight: number): number;
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157
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+
resizeHeight(distance: number): number;
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158
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+
setScrollTop(scrollTop: number): void;
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159
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+
updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
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160
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addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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161
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+
setCurrBpPerPx(n: number): void;
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162
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+
deleteBlock(key: string): void;
|
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163
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+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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164
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+
clearFeatureSelection(): void;
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165
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setFeatureIdUnderMouse(feature: string | undefined): void;
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166
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reload(): void;
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167
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+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
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168
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} & {
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169
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readonly regionTooLarge: boolean;
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readonly regionTooLargeReason: string;
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} & {
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172
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reload(): Promise<void>;
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afterAttach(): void;
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174
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} & {
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175
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regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
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177
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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contextMenuItems(): {
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label: string;
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icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
|
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181
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onClick: () => void;
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182
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+
}[];
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renderProps(): any;
|
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184
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+
} & {
|
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185
|
+
renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
|
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186
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+
overrideHeight: number;
|
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187
|
+
}): Promise<JSX.Element>;
|
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188
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
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189
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
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190
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type: import("mobx-state-tree").ISimpleType<string>;
|
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191
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
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192
|
+
} & {
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193
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height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
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194
|
+
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
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195
|
+
key: import("mobx-state-tree").ISimpleType<string>;
|
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196
|
+
region: import("mobx-state-tree").IModelType<{
|
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197
|
+
refName: import("mobx-state-tree").ISimpleType<string>;
|
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198
|
+
start: import("mobx-state-tree").ISimpleType<number>;
|
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199
|
+
end: import("mobx-state-tree").ISimpleType<number>;
|
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200
|
+
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
201
|
+
} & {
|
|
202
|
+
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
|
203
|
+
}, {
|
|
204
|
+
setRefName(newRefName: string): void;
|
|
205
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
206
|
+
reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
|
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207
|
+
isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
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208
|
+
isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
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209
|
+
}, {
|
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210
|
+
renderInProgress: AbortController | undefined;
|
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211
|
+
filled: boolean;
|
|
212
|
+
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
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213
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
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214
|
+
layout: any;
|
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215
|
+
status: string;
|
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216
|
+
error: unknown;
|
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217
|
+
message: string | undefined;
|
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218
|
+
maxHeightReached: boolean;
|
|
219
|
+
ReactComponent: ({ model, }: {
|
|
220
|
+
model: any;
|
|
221
|
+
}) => any;
|
|
222
|
+
renderProps: any;
|
|
223
|
+
} & {
|
|
224
|
+
doReload(): void;
|
|
225
|
+
afterAttach(): void;
|
|
226
|
+
setStatus(message: string): void;
|
|
227
|
+
setLoading(abortController: AbortController): void;
|
|
228
|
+
setMessage(messageText: string): void;
|
|
229
|
+
setRendered(props: {
|
|
230
|
+
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
|
|
231
|
+
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
232
|
+
layout: any;
|
|
233
|
+
maxHeightReached: boolean;
|
|
234
|
+
renderProps: any;
|
|
235
|
+
} | undefined): void;
|
|
236
|
+
setError(error: unknown): void;
|
|
237
|
+
reload(): void;
|
|
238
|
+
beforeDestroy(): void;
|
|
239
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
240
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
241
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
242
|
+
}, {
|
|
243
|
+
rendererTypeName: string;
|
|
244
|
+
error: unknown;
|
|
245
|
+
} & {
|
|
246
|
+
readonly RenderingComponent: import("react").FC<{
|
|
247
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
248
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
249
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
250
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
251
|
+
}> & {
|
|
252
|
+
rendererTypeName: string;
|
|
253
|
+
error: unknown;
|
|
254
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
255
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
256
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
257
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
258
|
+
}, {
|
|
259
|
+
rendererTypeName: string;
|
|
260
|
+
error: unknown;
|
|
261
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
262
|
+
onHorizontalScroll?: Function | undefined;
|
|
263
|
+
blockState?: Record<string, any> | undefined;
|
|
264
|
+
}>;
|
|
265
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
266
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
267
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
268
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
269
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
270
|
+
}> & {
|
|
271
|
+
rendererTypeName: string;
|
|
272
|
+
error: unknown;
|
|
273
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
274
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
275
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
276
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
277
|
+
}, {
|
|
278
|
+
rendererTypeName: string;
|
|
279
|
+
error: unknown;
|
|
280
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
281
|
+
}> | null;
|
|
282
|
+
readonly adapterConfig: any;
|
|
283
|
+
readonly parentTrack: any;
|
|
284
|
+
renderProps(): any;
|
|
285
|
+
readonly rendererType: any;
|
|
286
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
287
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
288
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
289
|
+
regionCannotBeRendered(): undefined;
|
|
290
|
+
} & {
|
|
291
|
+
setError(error?: unknown): void;
|
|
292
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
293
|
+
reload(): void;
|
|
294
|
+
} & {
|
|
295
|
+
currBpPerPx: number;
|
|
296
|
+
message: string;
|
|
297
|
+
featureIdUnderMouse: string | undefined;
|
|
298
|
+
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
299
|
+
scrollTop: number;
|
|
300
|
+
estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
|
|
301
|
+
estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
|
302
|
+
} & {
|
|
303
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
304
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
305
|
+
} & {
|
|
306
|
+
readonly renderDelay: number;
|
|
307
|
+
readonly TooltipComponent: import("react").FC<any>;
|
|
308
|
+
readonly selectedFeatureId: string | undefined;
|
|
309
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
310
|
+
} & {
|
|
311
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
312
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
313
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
|
314
|
+
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
315
|
+
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
316
|
+
readonly currentBytesRequested: number;
|
|
317
|
+
readonly currentFeatureScreenDensity: number;
|
|
318
|
+
readonly maxFeatureScreenDensity: any;
|
|
319
|
+
readonly estimatedStatsReady: boolean;
|
|
320
|
+
readonly maxAllowableBytes: number;
|
|
321
|
+
} & {
|
|
322
|
+
setMessage(message: string): void;
|
|
323
|
+
afterAttach(): void;
|
|
324
|
+
estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
|
|
325
|
+
headers?: Record<string, string> | undefined;
|
|
326
|
+
signal?: AbortSignal | undefined;
|
|
327
|
+
filters?: string[] | undefined;
|
|
328
|
+
}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
|
|
329
|
+
setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
|
|
330
|
+
setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
|
|
331
|
+
clearRegionStats(): void;
|
|
332
|
+
setHeight(displayHeight: number): number;
|
|
333
|
+
resizeHeight(distance: number): number;
|
|
334
|
+
setScrollTop(scrollTop: number): void;
|
|
335
|
+
updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
|
|
336
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
337
|
+
setCurrBpPerPx(n: number): void;
|
|
338
|
+
deleteBlock(key: string): void;
|
|
339
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
340
|
+
clearFeatureSelection(): void;
|
|
341
|
+
setFeatureIdUnderMouse(feature: string | undefined): void;
|
|
342
|
+
reload(): void;
|
|
343
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
344
|
+
} & {
|
|
345
|
+
readonly regionTooLarge: boolean;
|
|
346
|
+
readonly regionTooLargeReason: string;
|
|
347
|
+
} & {
|
|
348
|
+
reload(): Promise<void>;
|
|
349
|
+
afterAttach(): void;
|
|
350
|
+
} & {
|
|
351
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
352
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
|
|
353
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
354
|
+
contextMenuItems(): {
|
|
355
|
+
label: string;
|
|
356
|
+
icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
|
|
357
|
+
onClick: () => void;
|
|
358
|
+
}[];
|
|
359
|
+
renderProps(): any;
|
|
360
|
+
} & {
|
|
361
|
+
renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
|
|
362
|
+
overrideHeight: number;
|
|
363
|
+
}): Promise<JSX.Element>;
|
|
364
|
+
}, import("mobx-state-tree")._NotCustomized, {
|
|
365
|
+
id: string;
|
|
366
|
+
type: string;
|
|
367
|
+
rpcDriverName: string | undefined;
|
|
368
|
+
height: number;
|
|
369
|
+
userBpPerPxLimit: number | undefined;
|
|
370
|
+
userByteSizeLimit: number | undefined;
|
|
371
|
+
}>>;
|
|
372
|
+
children?: import("react").ReactNode;
|
|
373
|
+
}) => JSX.Element;
|
|
374
|
+
BaseLinearDisplay: import("mobx-state-tree").IModelType<{
|
|
375
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
376
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
377
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
378
|
+
} & {
|
|
379
|
+
height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
380
|
+
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
381
|
+
key: import("mobx-state-tree").ISimpleType<string>;
|
|
382
|
+
region: import("mobx-state-tree").IModelType<{
|
|
383
|
+
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
384
|
+
start: import("mobx-state-tree").ISimpleType<number>;
|
|
385
|
+
end: import("mobx-state-tree").ISimpleType<number>;
|
|
386
|
+
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
387
|
+
} & {
|
|
388
|
+
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
|
389
|
+
}, {
|
|
390
|
+
setRefName(newRefName: string): void;
|
|
391
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
392
|
+
reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
393
|
+
isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
394
|
+
isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
395
|
+
}, {
|
|
396
|
+
renderInProgress: AbortController | undefined;
|
|
397
|
+
filled: boolean;
|
|
398
|
+
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
|
399
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
400
|
+
layout: any;
|
|
401
|
+
status: string;
|
|
402
|
+
error: unknown;
|
|
403
|
+
message: string | undefined;
|
|
404
|
+
maxHeightReached: boolean;
|
|
405
|
+
ReactComponent: ({ model, }: {
|
|
406
|
+
model: any;
|
|
407
|
+
}) => any;
|
|
408
|
+
renderProps: any;
|
|
409
|
+
} & {
|
|
410
|
+
doReload(): void;
|
|
411
|
+
afterAttach(): void;
|
|
412
|
+
setStatus(message: string): void;
|
|
413
|
+
setLoading(abortController: AbortController): void;
|
|
414
|
+
setMessage(messageText: string): void;
|
|
415
|
+
setRendered(props: {
|
|
416
|
+
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
|
|
417
|
+
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
418
|
+
layout: any;
|
|
419
|
+
maxHeightReached: boolean;
|
|
420
|
+
renderProps: any;
|
|
421
|
+
} | undefined): void;
|
|
422
|
+
setError(error: unknown): void;
|
|
423
|
+
reload(): void;
|
|
424
|
+
beforeDestroy(): void;
|
|
425
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
426
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
427
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
428
|
+
}, {
|
|
429
|
+
rendererTypeName: string;
|
|
430
|
+
error: unknown;
|
|
431
|
+
} & {
|
|
432
|
+
readonly RenderingComponent: import("react").FC<{
|
|
433
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
434
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
435
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
436
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
437
|
+
}> & {
|
|
438
|
+
rendererTypeName: string;
|
|
439
|
+
error: unknown;
|
|
440
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
441
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
442
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
443
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
444
|
+
}, {
|
|
445
|
+
rendererTypeName: string;
|
|
446
|
+
error: unknown;
|
|
447
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
448
|
+
onHorizontalScroll?: Function | undefined;
|
|
449
|
+
blockState?: Record<string, any> | undefined;
|
|
450
|
+
}>;
|
|
451
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
452
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
453
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
454
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
455
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
456
|
+
}> & {
|
|
457
|
+
rendererTypeName: string;
|
|
458
|
+
error: unknown;
|
|
459
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
460
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
461
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
462
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
463
|
+
}, {
|
|
464
|
+
rendererTypeName: string;
|
|
465
|
+
error: unknown;
|
|
466
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
467
|
+
}> | null;
|
|
468
|
+
readonly adapterConfig: any;
|
|
469
|
+
readonly parentTrack: any;
|
|
470
|
+
renderProps(): any;
|
|
471
|
+
readonly rendererType: any;
|
|
472
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
473
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
474
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
475
|
+
regionCannotBeRendered(): undefined;
|
|
476
|
+
} & {
|
|
477
|
+
setError(error?: unknown): void;
|
|
478
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
479
|
+
reload(): void;
|
|
480
|
+
} & {
|
|
481
|
+
currBpPerPx: number;
|
|
482
|
+
message: string;
|
|
483
|
+
featureIdUnderMouse: string | undefined;
|
|
484
|
+
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
485
|
+
scrollTop: number;
|
|
486
|
+
estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
|
|
487
|
+
estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
|
488
|
+
} & {
|
|
489
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
490
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
491
|
+
} & {
|
|
492
|
+
readonly renderDelay: number;
|
|
493
|
+
readonly TooltipComponent: import("react").FC<any>;
|
|
494
|
+
readonly selectedFeatureId: string | undefined;
|
|
495
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
496
|
+
} & {
|
|
497
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
498
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
499
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
|
500
|
+
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
501
|
+
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
502
|
+
readonly currentBytesRequested: number;
|
|
503
|
+
readonly currentFeatureScreenDensity: number;
|
|
504
|
+
readonly maxFeatureScreenDensity: any;
|
|
505
|
+
readonly estimatedStatsReady: boolean;
|
|
506
|
+
readonly maxAllowableBytes: number;
|
|
507
|
+
} & {
|
|
508
|
+
setMessage(message: string): void;
|
|
509
|
+
afterAttach(): void;
|
|
510
|
+
estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
|
|
511
|
+
headers?: Record<string, string> | undefined;
|
|
512
|
+
signal?: AbortSignal | undefined;
|
|
513
|
+
filters?: string[] | undefined;
|
|
514
|
+
}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
|
|
515
|
+
setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
|
|
516
|
+
setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
|
|
517
|
+
clearRegionStats(): void;
|
|
518
|
+
setHeight(displayHeight: number): number;
|
|
519
|
+
resizeHeight(distance: number): number;
|
|
520
|
+
setScrollTop(scrollTop: number): void;
|
|
521
|
+
updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
|
|
522
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
523
|
+
setCurrBpPerPx(n: number): void;
|
|
524
|
+
deleteBlock(key: string): void;
|
|
525
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
526
|
+
clearFeatureSelection(): void;
|
|
527
|
+
setFeatureIdUnderMouse(feature: string | undefined): void;
|
|
528
|
+
reload(): void;
|
|
529
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
530
|
+
} & {
|
|
531
|
+
readonly regionTooLarge: boolean;
|
|
532
|
+
readonly regionTooLargeReason: string;
|
|
533
|
+
} & {
|
|
534
|
+
reload(): Promise<void>;
|
|
535
|
+
afterAttach(): void;
|
|
536
|
+
} & {
|
|
537
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
538
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
|
|
539
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
540
|
+
contextMenuItems(): {
|
|
541
|
+
label: string;
|
|
542
|
+
icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
|
|
543
|
+
onClick: () => void;
|
|
544
|
+
}[];
|
|
545
|
+
renderProps(): any;
|
|
546
|
+
} & {
|
|
547
|
+
renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
|
|
548
|
+
overrideHeight: number;
|
|
549
|
+
}): Promise<JSX.Element>;
|
|
550
|
+
}, import("mobx-state-tree")._NotCustomized, {
|
|
551
|
+
id: string;
|
|
552
|
+
type: string;
|
|
553
|
+
rpcDriverName: string | undefined;
|
|
554
|
+
height: number;
|
|
555
|
+
userBpPerPxLimit: number | undefined;
|
|
556
|
+
userByteSizeLimit: number | undefined;
|
|
557
|
+
}>;
|
|
558
|
+
baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
559
|
+
};
|
|
560
|
+
install(pluginManager: PluginManager): void;
|
|
561
|
+
configure(pluginManager: PluginManager): void;
|
|
562
|
+
}
|
|
563
|
+
export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, };
|
|
564
|
+
export type { LinearGenomeViewModel, LinearGenomeViewStateModel, BlockModel };
|
|
565
|
+
export type { BaseLinearDisplayModel } from './BaseLinearDisplay';
|