@jbrowse/plugin-linear-genome-view 1.6.9 → 1.7.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (111) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +232 -0
  3. package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
  4. package/dist/BaseLinearDisplay/components/Block.js +86 -0
  5. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
  6. package/dist/BaseLinearDisplay/components/LinearBlocks.js +110 -0
  7. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  8. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +192 -0
  9. package/dist/BaseLinearDisplay/index.d.ts +5 -5
  10. package/dist/BaseLinearDisplay/index.js +41 -0
  11. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
  12. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +763 -0
  13. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
  14. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +24 -0
  15. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
  16. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +328 -0
  17. package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
  18. package/dist/LinearBareDisplay/configSchema.js +19 -0
  19. package/dist/LinearBareDisplay/index.d.ts +2 -2
  20. package/dist/LinearBareDisplay/index.js +21 -0
  21. package/dist/LinearBareDisplay/index.test.js +33 -0
  22. package/dist/LinearBareDisplay/model.d.ts +192 -192
  23. package/dist/LinearBareDisplay/model.js +44 -0
  24. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
  25. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +94 -0
  26. package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
  27. package/dist/LinearBasicDisplay/configSchema.js +25 -0
  28. package/dist/LinearBasicDisplay/index.d.ts +2 -2
  29. package/dist/LinearBasicDisplay/index.js +23 -0
  30. package/dist/LinearBasicDisplay/model.d.ts +213 -213
  31. package/dist/LinearBasicDisplay/model.js +162 -0
  32. package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
  33. package/dist/LinearGenomeView/components/CenterLine.js +80 -0
  34. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
  35. package/dist/LinearGenomeView/components/ExportSvgDialog.js +137 -0
  36. package/dist/LinearGenomeView/components/Header.d.ts +7 -7
  37. package/dist/LinearGenomeView/components/Header.js +144 -0
  38. package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
  39. package/dist/LinearGenomeView/components/HelpDialog.js +48 -0
  40. package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
  41. package/dist/LinearGenomeView/components/ImportForm.js +330 -0
  42. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
  43. package/dist/LinearGenomeView/components/LinearGenomeView.js +129 -0
  44. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +234 -0
  45. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
  46. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +349 -0
  47. package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
  48. package/dist/LinearGenomeView/components/MiniControls.js +83 -0
  49. package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
  50. package/dist/LinearGenomeView/components/OverviewRubberBand.js +310 -0
  51. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
  52. package/dist/LinearGenomeView/components/OverviewScaleBar.js +403 -0
  53. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
  54. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +331 -0
  55. package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
  56. package/dist/LinearGenomeView/components/RubberBand.js +309 -0
  57. package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
  58. package/dist/LinearGenomeView/components/Ruler.js +101 -0
  59. package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
  60. package/dist/LinearGenomeView/components/ScaleBar.js +184 -0
  61. package/dist/LinearGenomeView/components/ScaleBar.test.js +180 -0
  62. package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
  63. package/dist/LinearGenomeView/components/SearchBox.js +201 -0
  64. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
  65. package/dist/LinearGenomeView/components/SearchResultsDialog.js +159 -0
  66. package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
  67. package/dist/LinearGenomeView/components/SequenceDialog.js +304 -0
  68. package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
  69. package/dist/LinearGenomeView/components/TrackContainer.js +179 -0
  70. package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
  71. package/dist/LinearGenomeView/components/TrackLabel.js +165 -0
  72. package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
  73. package/dist/LinearGenomeView/components/TracksContainer.js +214 -0
  74. package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
  75. package/dist/LinearGenomeView/components/VerticalGuides.js +116 -0
  76. package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
  77. package/dist/LinearGenomeView/components/ZoomControls.js +92 -0
  78. package/dist/LinearGenomeView/components/util.d.ts +2 -2
  79. package/dist/LinearGenomeView/components/util.js +16 -0
  80. package/dist/LinearGenomeView/index.d.ts +292 -292
  81. package/dist/LinearGenomeView/index.js +1418 -0
  82. package/dist/LinearGenomeView/index.test.js +1170 -0
  83. package/dist/LinearGenomeView/util.d.ts +14 -14
  84. package/dist/LinearGenomeView/util.js +93 -0
  85. package/dist/LinearGenomeView/util.test.js +78 -0
  86. package/dist/index.d.ts +565 -565
  87. package/dist/index.js +293 -6
  88. package/package.json +6 -9
  89. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +2 -0
  90. package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +10 -8
  91. package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +1 -1
  92. package/src/LinearBasicDisplay/model.ts +17 -18
  93. package/src/LinearGenomeView/components/Header.tsx +1 -1
  94. package/src/LinearGenomeView/components/ImportForm.tsx +10 -4
  95. package/src/LinearGenomeView/components/LinearGenomeView.test.js +1 -0
  96. package/src/LinearGenomeView/components/OverviewScaleBar.tsx +2 -2
  97. package/src/LinearGenomeView/components/RubberBand.tsx +14 -24
  98. package/src/LinearGenomeView/components/ScaleBar.test.tsx +1 -0
  99. package/src/LinearGenomeView/components/ScaleBar.tsx +3 -6
  100. package/src/LinearGenomeView/components/SequenceDialog.tsx +1 -1
  101. package/src/LinearGenomeView/components/TrackLabel.tsx +1 -1
  102. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +0 -4
  103. package/src/LinearGenomeView/index.tsx +2 -3
  104. package/dist/LinearBareDisplay/index.test.d.ts +0 -1
  105. package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
  106. package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
  107. package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
  108. package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
  109. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
  110. package/dist/plugin-linear-genome-view.esm.js +0 -8105
  111. package/dist/plugin-linear-genome-view.esm.js.map +0 -1
@@ -0,0 +1,192 @@
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+ "use strict";
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+
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+
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+ var _typeof = require("@babel/runtime/helpers/typeof");
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+ value: true
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+
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+ var _Typography = _interopRequireDefault(require("@material-ui/core/Typography"));
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+
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+ var _styles = require("@material-ui/core/styles");
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+
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+ var _mobxReact = require("mobx-react");
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+
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+ var _mobxStateTree = require("mobx-state-tree");
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+
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+ var _tracks = require("@jbrowse/core/util/tracks");
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+
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+ var _Button = _interopRequireDefault(require("@material-ui/core/Button"));
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+
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+ var _Refresh = _interopRequireDefault(require("@material-ui/icons/Refresh"));
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+
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+
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+
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+ var useStyles = (0, _styles.makeStyles)(function (theme) {
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+ return {
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+ loading: {
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+ paddingLeft: '0.6em',
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+ backgroundColor: theme.palette.action.disabledBackground,
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+ backgroundImage: 'repeating-linear-gradient(45deg, transparent, transparent 5px, rgba(255,255,255,.5) 5px, rgba(255,255,255,.5) 10px)',
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+ height: '100%',
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+ width: '100%',
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+ pointerEvents: 'none',
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+ textAlign: 'center'
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+ },
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+ blockMessage: {
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+ width: '100%',
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+ background: theme.palette.action.disabledBackground,
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+ padding: theme.spacing(2),
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+ pointerEvents: 'none',
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+ textAlign: 'center'
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+ },
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+ blockError: {
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+ padding: theme.spacing(2),
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+ width: '100%',
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+ whiteSpace: 'normal',
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+ color: theme.palette.error.main,
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+ width: '100%',
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+ background: theme.palette.action.disabledBackground,
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+ padding: theme.spacing(2),
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+ textAlign: 'center'
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+ },
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+ dots: {
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+ '&::after': {
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+ display: 'inline-block',
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+ animation: '$ellipsis 1.5s infinite',
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+ content: '"."',
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+ width: '1em',
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+ textAlign: 'left'
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+ }
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+ },
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+ '@keyframes ellipsis': {
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+ '0%': {
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+ content: '"."'
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+ },
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+ '33%': {
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+ content: '".."'
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+ },
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+ '66%': {
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+ content: '"..."'
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+ }
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+ return /*#__PURE__*/_react["default"].createElement("div", {
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+
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+ var LoadingMessage = (0, _mobxReact.observer)(function (_ref2) {
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+ var model = _ref2.model;
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+ // only show the loading message after 300ms to prevent excessive flickering
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+ _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
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+ shown = _useState2[0],
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+ setShown = _useState2[1];
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+
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+ var classes = useStyles();
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+ (0, _react.useEffect)(function () {
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+ var killed = false;
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+ var timeout = setTimeout(function () {
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+ if (!killed) {
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+ setShown(true);
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+ }, 300);
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+ return function () {
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+ clearTimeout(timeout);
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+ });
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+
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+ function BlockMessage(_ref3) {
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+ var messageContent = _ref3.messageContent;
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+ }, messageContent);
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+ }
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+ function BlockError(_ref4) {
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+ var error = _ref4.error,
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+ reload = _ref4.reload,
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+ displayHeight = _ref4.displayHeight;
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+ var classes = useStyles();
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+ return /*#__PURE__*/_react["default"].createElement("div", {
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+ className: classes.blockError,
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+ color: "error",
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+ variant: "body2",
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+ display: "inline"
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+ }, "".concat(error)));
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+ }
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+
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+ var ServerSideRenderedBlockContent = (0, _mobxReact.observer)(function (_ref5) {
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+ var model = _ref5.model;
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+
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+ if (model.error) {
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+ return /*#__PURE__*/_react["default"].createElement(Repeater, null, /*#__PURE__*/_react["default"].createElement(BlockError, {
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+ error: model.error,
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+ reload: model.reload,
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+ displayHeight: (0, _tracks.getParentRenderProps)(model).displayModel.height
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+ }));
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+ }
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+
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+ if (model.message) {
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+ return /*#__PURE__*/_react["default"].createElement(Repeater, null, /*#__PURE__*/_react["default"].createElement(BlockMessage, {
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+ var _default = ServerSideRenderedBlockContent;
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+ exports["default"] = _default;
@@ -1,5 +1,5 @@
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- export { baseLinearDisplayConfigSchema } from './models/baseLinearDisplayConfigSchema';
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- export { BaseLinearDisplay } from './models/BaseLinearDisplayModel';
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- export type { BlockModel } from './models/serverSideRenderedBlock';
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- export type { BaseLinearDisplayModel, BaseLinearDisplayStateModel, } from './models/BaseLinearDisplayModel';
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- export { default as BaseLinearDisplayComponent, Tooltip, } from './components/BaseLinearDisplay';
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+ export { baseLinearDisplayConfigSchema } from './models/baseLinearDisplayConfigSchema';
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+ export { BaseLinearDisplay } from './models/BaseLinearDisplayModel';
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+ export type { BlockModel } from './models/serverSideRenderedBlock';
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+ export type { BaseLinearDisplayModel, BaseLinearDisplayStateModel, } from './models/BaseLinearDisplayModel';
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+ export { default as BaseLinearDisplayComponent, Tooltip, } from './components/BaseLinearDisplay';
@@ -0,0 +1,41 @@
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+ "use strict";
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+
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+ var _typeof = require("@babel/runtime/helpers/typeof");
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+
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+ Object.defineProperty(exports, "__esModule", {
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+ value: true
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+ });
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+ Object.defineProperty(exports, "BaseLinearDisplay", {
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+ enumerable: true,
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+ get: function get() {
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+ return _BaseLinearDisplayModel.BaseLinearDisplay;
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+ }
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+ });
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+ Object.defineProperty(exports, "BaseLinearDisplayComponent", {
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+ enumerable: true,
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+ get: function get() {
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+ return _BaseLinearDisplay["default"];
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+ }
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+ });
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+ Object.defineProperty(exports, "Tooltip", {
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+ enumerable: true,
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+ get: function get() {
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+ return _BaseLinearDisplay.Tooltip;
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+ }
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+ });
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+ Object.defineProperty(exports, "baseLinearDisplayConfigSchema", {
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+ enumerable: true,
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+ get: function get() {
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+ return _baseLinearDisplayConfigSchema.baseLinearDisplayConfigSchema;
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+ }
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+ });
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+
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+ var _baseLinearDisplayConfigSchema = require("./models/baseLinearDisplayConfigSchema");
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+
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+ var _BaseLinearDisplayModel = require("./models/BaseLinearDisplayModel");
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+
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+ var _BaseLinearDisplay = _interopRequireWildcard(require("./components/BaseLinearDisplay"));
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+
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+ function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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+
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+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }