@jbrowse/plugin-linear-genome-view 1.6.9 → 1.7.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (111) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +232 -0
  3. package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
  4. package/dist/BaseLinearDisplay/components/Block.js +86 -0
  5. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
  6. package/dist/BaseLinearDisplay/components/LinearBlocks.js +110 -0
  7. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  8. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +192 -0
  9. package/dist/BaseLinearDisplay/index.d.ts +5 -5
  10. package/dist/BaseLinearDisplay/index.js +41 -0
  11. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
  12. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +763 -0
  13. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
  14. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +24 -0
  15. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
  16. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +328 -0
  17. package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
  18. package/dist/LinearBareDisplay/configSchema.js +19 -0
  19. package/dist/LinearBareDisplay/index.d.ts +2 -2
  20. package/dist/LinearBareDisplay/index.js +21 -0
  21. package/dist/LinearBareDisplay/index.test.js +33 -0
  22. package/dist/LinearBareDisplay/model.d.ts +192 -192
  23. package/dist/LinearBareDisplay/model.js +44 -0
  24. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
  25. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +94 -0
  26. package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
  27. package/dist/LinearBasicDisplay/configSchema.js +25 -0
  28. package/dist/LinearBasicDisplay/index.d.ts +2 -2
  29. package/dist/LinearBasicDisplay/index.js +23 -0
  30. package/dist/LinearBasicDisplay/model.d.ts +213 -213
  31. package/dist/LinearBasicDisplay/model.js +162 -0
  32. package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
  33. package/dist/LinearGenomeView/components/CenterLine.js +80 -0
  34. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
  35. package/dist/LinearGenomeView/components/ExportSvgDialog.js +137 -0
  36. package/dist/LinearGenomeView/components/Header.d.ts +7 -7
  37. package/dist/LinearGenomeView/components/Header.js +144 -0
  38. package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
  39. package/dist/LinearGenomeView/components/HelpDialog.js +48 -0
  40. package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
  41. package/dist/LinearGenomeView/components/ImportForm.js +330 -0
  42. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
  43. package/dist/LinearGenomeView/components/LinearGenomeView.js +129 -0
  44. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +234 -0
  45. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
  46. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +349 -0
  47. package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
  48. package/dist/LinearGenomeView/components/MiniControls.js +83 -0
  49. package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
  50. package/dist/LinearGenomeView/components/OverviewRubberBand.js +310 -0
  51. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
  52. package/dist/LinearGenomeView/components/OverviewScaleBar.js +403 -0
  53. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
  54. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +331 -0
  55. package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
  56. package/dist/LinearGenomeView/components/RubberBand.js +309 -0
  57. package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
  58. package/dist/LinearGenomeView/components/Ruler.js +101 -0
  59. package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
  60. package/dist/LinearGenomeView/components/ScaleBar.js +184 -0
  61. package/dist/LinearGenomeView/components/ScaleBar.test.js +180 -0
  62. package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
  63. package/dist/LinearGenomeView/components/SearchBox.js +201 -0
  64. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
  65. package/dist/LinearGenomeView/components/SearchResultsDialog.js +159 -0
  66. package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
  67. package/dist/LinearGenomeView/components/SequenceDialog.js +304 -0
  68. package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
  69. package/dist/LinearGenomeView/components/TrackContainer.js +179 -0
  70. package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
  71. package/dist/LinearGenomeView/components/TrackLabel.js +165 -0
  72. package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
  73. package/dist/LinearGenomeView/components/TracksContainer.js +214 -0
  74. package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
  75. package/dist/LinearGenomeView/components/VerticalGuides.js +116 -0
  76. package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
  77. package/dist/LinearGenomeView/components/ZoomControls.js +92 -0
  78. package/dist/LinearGenomeView/components/util.d.ts +2 -2
  79. package/dist/LinearGenomeView/components/util.js +16 -0
  80. package/dist/LinearGenomeView/index.d.ts +292 -292
  81. package/dist/LinearGenomeView/index.js +1418 -0
  82. package/dist/LinearGenomeView/index.test.js +1170 -0
  83. package/dist/LinearGenomeView/util.d.ts +14 -14
  84. package/dist/LinearGenomeView/util.js +93 -0
  85. package/dist/LinearGenomeView/util.test.js +78 -0
  86. package/dist/index.d.ts +565 -565
  87. package/dist/index.js +293 -6
  88. package/package.json +6 -9
  89. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +2 -0
  90. package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +10 -8
  91. package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +1 -1
  92. package/src/LinearBasicDisplay/model.ts +17 -18
  93. package/src/LinearGenomeView/components/Header.tsx +1 -1
  94. package/src/LinearGenomeView/components/ImportForm.tsx +10 -4
  95. package/src/LinearGenomeView/components/LinearGenomeView.test.js +1 -0
  96. package/src/LinearGenomeView/components/OverviewScaleBar.tsx +2 -2
  97. package/src/LinearGenomeView/components/RubberBand.tsx +14 -24
  98. package/src/LinearGenomeView/components/ScaleBar.test.tsx +1 -0
  99. package/src/LinearGenomeView/components/ScaleBar.tsx +3 -6
  100. package/src/LinearGenomeView/components/SequenceDialog.tsx +1 -1
  101. package/src/LinearGenomeView/components/TrackLabel.tsx +1 -1
  102. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +0 -4
  103. package/src/LinearGenomeView/index.tsx +2 -3
  104. package/dist/LinearBareDisplay/index.test.d.ts +0 -1
  105. package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
  106. package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
  107. package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
  108. package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
  109. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
  110. package/dist/plugin-linear-genome-view.esm.js +0 -8105
  111. package/dist/plugin-linear-genome-view.esm.js.map +0 -1
@@ -1,27 +1,27 @@
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- /// <reference types="react" />
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- import ReactPropTypes from 'prop-types';
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- declare function Ruler({ start, end, bpPerPx, reversed, major, minor, }: {
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- start: number;
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- end: number;
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- bpPerPx: number;
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- reversed?: boolean;
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- major: boolean;
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- minor: boolean;
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- }): JSX.Element;
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- declare namespace Ruler {
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- var propTypes: {
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- start: ReactPropTypes.Validator<number>;
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- end: ReactPropTypes.Validator<number>;
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- bpPerPx: ReactPropTypes.Validator<number>;
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- reversed: ReactPropTypes.Requireable<boolean>;
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- major: ReactPropTypes.Requireable<boolean>;
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- minor: ReactPropTypes.Requireable<boolean>;
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- };
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- var defaultProps: {
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- reversed: boolean;
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- major: boolean;
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- minor: boolean;
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- };
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- }
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- declare const _default: typeof Ruler;
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- export default _default;
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+ /// <reference types="react" />
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+ import ReactPropTypes from 'prop-types';
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+ declare function Ruler({ start, end, bpPerPx, reversed, major, minor, }: {
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+ start: number;
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+ end: number;
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+ bpPerPx: number;
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+ reversed?: boolean;
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+ major: boolean;
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+ minor: boolean;
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+ }): JSX.Element;
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+ declare namespace Ruler {
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+ var propTypes: {
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+ start: ReactPropTypes.Validator<number>;
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+ end: ReactPropTypes.Validator<number>;
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+ bpPerPx: ReactPropTypes.Validator<number>;
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+ reversed: ReactPropTypes.Requireable<boolean>;
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+ major: ReactPropTypes.Requireable<boolean>;
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+ minor: ReactPropTypes.Requireable<boolean>;
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+ };
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+ var defaultProps: {
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+ reversed: boolean;
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+ major: boolean;
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+ minor: boolean;
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+ };
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+ }
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+ declare const _default: typeof Ruler;
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+ export default _default;
@@ -0,0 +1,101 @@
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+ "use strict";
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+
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+
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+ Object.defineProperty(exports, "__esModule", {
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+ value: true
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+ });
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+ exports["default"] = void 0;
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+
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+ var _styles = require("@material-ui/core/styles");
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+
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+ var _mobxReact = require("mobx-react");
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+
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+ var _propTypes = _interopRequireDefault(require("prop-types"));
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+
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+ var _react = _interopRequireDefault(require("react"));
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+
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+ var _util = require("../util");
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+
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+ function mathPower(num) {
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+ if (num < 999) {
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+ return String(num);
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+ }
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+
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+ return "".concat(mathPower(~~(num / 1000)), ",").concat("00".concat(~~(num % 1000)).substr(-3, 3));
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+ }
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+
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+ var useStyles = (0, _styles.makeStyles)(function
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+ /* theme */
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+ () {
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+ return {
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+ majorTickLabel: {
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+ fontSize: '11px' // fill: theme.palette.text.primary,
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+
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+ },
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+ majorTick: {
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+ stroke: '#555' // stroke: theme.palette.text.secondary,
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+
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+ },
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+ minorTick: {
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+ stroke: '#999' // stroke: theme.palette.text.hint,
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+
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+ }
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+ };
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+ });
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+
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+ function Ruler(_ref) {
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+ var start = _ref.start,
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+ end = _ref.end,
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+ bpPerPx = _ref.bpPerPx,
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+ reversed = _ref.reversed,
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+ major = _ref.major,
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+ minor = _ref.minor;
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+ var classes = useStyles();
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+ var ticks = (0, _util.makeTicks)(start, end, bpPerPx, major, minor);
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+ return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, ticks.map(function (tick) {
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+ var x = (reversed ? end - tick.base : tick.base - start) / bpPerPx;
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+ return /*#__PURE__*/_react["default"].createElement("line", {
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+ key: tick.base,
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+ x1: x,
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+ x2: x,
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+ y1: 0,
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+ y2: tick.type === 'major' ? 6 : 4,
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+ strokeWidth: 1,
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+ stroke: tick.type === 'major' ? '#555' : '#999',
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+ className: tick.type === 'major' ? classes.majorTick : classes.minorTick,
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+ "data-bp": tick.base
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+ });
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+ }), ticks.filter(function (tick) {
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+ return tick.type === 'major';
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+ }).map(function (tick) {
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+ var x = (reversed ? end - tick.base : tick.base - start) / bpPerPx;
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+ return /*#__PURE__*/_react["default"].createElement("text", {
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+ x: x - 3,
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+ y: 7 + 11,
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+ key: "label-".concat(tick.base),
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+ style: {
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+ fontSize: '11px'
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+ },
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+ className: classes.majorTickLabel
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+ }, mathPower(tick.base + 1));
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+ }));
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+ }
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+
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+ Ruler.propTypes = {
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+ start: _propTypes["default"].number.isRequired,
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+ end: _propTypes["default"].number.isRequired,
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+ bpPerPx: _propTypes["default"].number.isRequired,
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+ reversed: _propTypes["default"].bool,
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+ major: _propTypes["default"].bool,
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+ minor: _propTypes["default"].bool
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+ };
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+ Ruler.defaultProps = {
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+ reversed: false,
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+ major: true,
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+ minor: true
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+ };
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+
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+ var _default = (0, _mobxReact.observer)(Ruler);
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+
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+ exports["default"] = _default;