@jbrowse/plugin-linear-genome-view 1.6.9 → 1.7.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (111) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +232 -0
  3. package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
  4. package/dist/BaseLinearDisplay/components/Block.js +86 -0
  5. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
  6. package/dist/BaseLinearDisplay/components/LinearBlocks.js +110 -0
  7. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  8. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +192 -0
  9. package/dist/BaseLinearDisplay/index.d.ts +5 -5
  10. package/dist/BaseLinearDisplay/index.js +41 -0
  11. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
  12. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +763 -0
  13. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
  14. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +24 -0
  15. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
  16. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +328 -0
  17. package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
  18. package/dist/LinearBareDisplay/configSchema.js +19 -0
  19. package/dist/LinearBareDisplay/index.d.ts +2 -2
  20. package/dist/LinearBareDisplay/index.js +21 -0
  21. package/dist/LinearBareDisplay/index.test.js +33 -0
  22. package/dist/LinearBareDisplay/model.d.ts +192 -192
  23. package/dist/LinearBareDisplay/model.js +44 -0
  24. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
  25. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +94 -0
  26. package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
  27. package/dist/LinearBasicDisplay/configSchema.js +25 -0
  28. package/dist/LinearBasicDisplay/index.d.ts +2 -2
  29. package/dist/LinearBasicDisplay/index.js +23 -0
  30. package/dist/LinearBasicDisplay/model.d.ts +213 -213
  31. package/dist/LinearBasicDisplay/model.js +162 -0
  32. package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
  33. package/dist/LinearGenomeView/components/CenterLine.js +80 -0
  34. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
  35. package/dist/LinearGenomeView/components/ExportSvgDialog.js +137 -0
  36. package/dist/LinearGenomeView/components/Header.d.ts +7 -7
  37. package/dist/LinearGenomeView/components/Header.js +144 -0
  38. package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
  39. package/dist/LinearGenomeView/components/HelpDialog.js +48 -0
  40. package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
  41. package/dist/LinearGenomeView/components/ImportForm.js +330 -0
  42. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
  43. package/dist/LinearGenomeView/components/LinearGenomeView.js +129 -0
  44. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +234 -0
  45. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
  46. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +349 -0
  47. package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
  48. package/dist/LinearGenomeView/components/MiniControls.js +83 -0
  49. package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
  50. package/dist/LinearGenomeView/components/OverviewRubberBand.js +310 -0
  51. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
  52. package/dist/LinearGenomeView/components/OverviewScaleBar.js +403 -0
  53. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
  54. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +331 -0
  55. package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
  56. package/dist/LinearGenomeView/components/RubberBand.js +309 -0
  57. package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
  58. package/dist/LinearGenomeView/components/Ruler.js +101 -0
  59. package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
  60. package/dist/LinearGenomeView/components/ScaleBar.js +184 -0
  61. package/dist/LinearGenomeView/components/ScaleBar.test.js +180 -0
  62. package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
  63. package/dist/LinearGenomeView/components/SearchBox.js +201 -0
  64. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
  65. package/dist/LinearGenomeView/components/SearchResultsDialog.js +159 -0
  66. package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
  67. package/dist/LinearGenomeView/components/SequenceDialog.js +304 -0
  68. package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
  69. package/dist/LinearGenomeView/components/TrackContainer.js +179 -0
  70. package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
  71. package/dist/LinearGenomeView/components/TrackLabel.js +165 -0
  72. package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
  73. package/dist/LinearGenomeView/components/TracksContainer.js +214 -0
  74. package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
  75. package/dist/LinearGenomeView/components/VerticalGuides.js +116 -0
  76. package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
  77. package/dist/LinearGenomeView/components/ZoomControls.js +92 -0
  78. package/dist/LinearGenomeView/components/util.d.ts +2 -2
  79. package/dist/LinearGenomeView/components/util.js +16 -0
  80. package/dist/LinearGenomeView/index.d.ts +292 -292
  81. package/dist/LinearGenomeView/index.js +1418 -0
  82. package/dist/LinearGenomeView/index.test.js +1170 -0
  83. package/dist/LinearGenomeView/util.d.ts +14 -14
  84. package/dist/LinearGenomeView/util.js +93 -0
  85. package/dist/LinearGenomeView/util.test.js +78 -0
  86. package/dist/index.d.ts +565 -565
  87. package/dist/index.js +293 -6
  88. package/package.json +6 -9
  89. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +2 -0
  90. package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +10 -8
  91. package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +1 -1
  92. package/src/LinearBasicDisplay/model.ts +17 -18
  93. package/src/LinearGenomeView/components/Header.tsx +1 -1
  94. package/src/LinearGenomeView/components/ImportForm.tsx +10 -4
  95. package/src/LinearGenomeView/components/LinearGenomeView.test.js +1 -0
  96. package/src/LinearGenomeView/components/OverviewScaleBar.tsx +2 -2
  97. package/src/LinearGenomeView/components/RubberBand.tsx +14 -24
  98. package/src/LinearGenomeView/components/ScaleBar.test.tsx +1 -0
  99. package/src/LinearGenomeView/components/ScaleBar.tsx +3 -6
  100. package/src/LinearGenomeView/components/SequenceDialog.tsx +1 -1
  101. package/src/LinearGenomeView/components/TrackLabel.tsx +1 -1
  102. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +0 -4
  103. package/src/LinearGenomeView/index.tsx +2 -3
  104. package/dist/LinearBareDisplay/index.test.d.ts +0 -1
  105. package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
  106. package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
  107. package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
  108. package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
  109. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
  110. package/dist/plugin-linear-genome-view.esm.js +0 -8105
  111. package/dist/plugin-linear-genome-view.esm.js.map +0 -1
@@ -1,401 +1,401 @@
1
- import React from 'react';
2
- declare const _default: React.ForwardRefExoticComponent<{
3
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
4
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
- displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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- } & {
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- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
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- offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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- bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
11
- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
15
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
16
- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
19
- setRefName(newRefName: string): void;
20
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
21
- tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
22
- hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
24
- trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
25
- trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
26
- showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
27
- showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
28
- }> & {
29
- width: number;
30
- } & {
31
- menuItems(): import("@jbrowse/core/ui").MenuItem[];
32
- } & {
33
- setDisplayName(name: string): void;
34
- setWidth(newWidth: number): void;
35
- } & {
36
- volatileWidth: number | undefined;
37
- minimumBlockWidth: number;
38
- draggingTrackId: string | undefined;
39
- volatileError: Error | undefined;
40
- afterDisplayedRegionsSetCallbacks: Function[];
41
- scaleFactor: number;
42
- trackRefs: {
43
- [key: string]: any;
44
- };
45
- coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
46
- coarseTotalBp: number;
47
- leftOffset: import("..").BpOffset | undefined;
48
- rightOffset: import("..").BpOffset | undefined;
49
- searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
50
- searchQuery: string | undefined;
51
- seqDialogDisplayed: boolean;
52
- } & {
53
- readonly width: number;
54
- readonly interRegionPaddingWidth: number;
55
- } & {
56
- readonly assemblyErrors: string;
57
- readonly assembliesInitialized: boolean;
58
- readonly initialized: boolean;
59
- readonly hasDisplayedRegions: boolean;
60
- readonly isSearchDialogDisplayed: boolean;
61
- readonly scaleBarHeight: number;
62
- readonly headerHeight: number;
63
- readonly trackHeights: any;
64
- readonly trackHeightsWithResizeHandles: any;
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- readonly height: any;
66
- readonly totalBp: number;
67
- readonly maxBpPerPx: number;
68
- readonly minBpPerPx: number;
69
- readonly error: string | Error;
70
- readonly maxOffset: number;
71
- readonly minOffset: number;
72
- readonly displayedRegionsTotalPx: number;
73
- renderProps(): any;
74
- readonly assemblyNames: string[];
75
- searchScope(assemblyName: string): {
76
- assemblyName: string;
77
- includeAggregateIndexes: boolean;
78
- tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
79
- };
80
- bpToPx({ refName, coord, regionNumber, }: {
81
- refName: string;
82
- coord: number;
83
- regionNumber?: number | undefined;
84
- }): {
85
- index: number;
86
- offsetPx: number;
87
- } | undefined;
88
- pxToBp(px: number): {
89
- oob: boolean;
90
- coord: number;
91
- offset: number;
92
- index: number;
93
- refName: string;
94
- start: number;
95
- end: number;
96
- reversed: boolean;
97
- assemblyName: string;
98
- };
99
- getTrack(id: string): any;
100
- rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
101
- rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
102
- readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
103
- readonly centerLineInfo: {
104
- oob: boolean;
105
- coord: number;
106
- offset: number;
107
- index: number;
108
- refName: string;
109
- start: number;
110
- end: number;
111
- reversed: boolean;
112
- assemblyName: string;
113
- } | undefined;
114
- } & {
115
- setShowCytobands(flag: boolean): void;
116
- setWidth(newWidth: number): void;
117
- setError(error: Error | undefined): void;
118
- toggleHeader(): void;
119
- toggleHeaderOverview(): void;
120
- scrollTo(offsetPx: number): number;
121
- zoomTo(bpPerPx: number): number;
122
- setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;
123
- setSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query: string | undefined): void;
124
- setSequenceDialogOpen(open: boolean): void;
125
- setNewView(bpPerPx: number, offsetPx: number): void;
126
- horizontallyFlip(): void;
127
- showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
128
- hideTrack(trackId: string): number;
129
- } & {
130
- moveTrack(movingTrackId: string, targetTrackId: string): void;
131
- closeView(): void;
132
- toggleTrack(trackId: string): void;
133
- setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
134
- toggleCenterLine(): void;
135
- setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
136
- activateTrackSelector(): import("@jbrowse/core/util").Widget;
137
- navToLocString(locString: string, optAssemblyName?: string | undefined): void;
138
- navTo(query: import("..").NavLocation): void;
139
- navToMultiple(locations: import("..").NavLocation[]): void;
140
- zoomToDisplayedRegions(leftPx: import("..").BpOffset, rightPx: import("..").BpOffset): void;
141
- getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
142
- start: number;
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- end: number;
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- regionNumber?: number | undefined;
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- reversed?: boolean | undefined;
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- refName: string;
147
- assemblyName: string;
148
- key: string;
149
- offsetPx: number;
150
- widthPx: number;
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- variant?: string | undefined;
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- isLeftEndOfDisplayedRegion?: boolean | undefined;
153
- }[];
154
- afterDisplayedRegionsSet(cb: Function): void;
155
- moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
156
- horizontalScroll(distance: number): number;
157
- centerAt(bp: number, refName: string, regionIndex: number): void;
158
- center(): void;
159
- showAllRegions(): void;
160
- showAllRegionsInAssembly(assemblyName?: string | undefined): void;
161
- setDraggingTrackId(idx?: string | undefined): void;
162
- setScaleFactor(factor: number): void;
163
- } & {
164
- slide: (viewWidths: number) => void;
165
- } & {
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- zoom: (targetBpPerPx: number) => void;
167
- } & {
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- readonly canShowCytobands: boolean;
169
- readonly showCytobands: boolean;
170
- readonly anyCytobandsExist: boolean;
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- readonly cytobandOffset: number;
172
- } & {
173
- menuItems(): import("@jbrowse/core/ui").MenuItem[];
174
- } & {
175
- readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
176
- readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
177
- readonly roundedDynamicBlocks: {
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- start: number;
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- end: number;
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- regionNumber?: number | undefined;
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- reversed?: boolean | undefined;
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- refName: string;
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- assemblyName: string;
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- key: string;
185
- offsetPx: number;
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- widthPx: number;
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- variant?: string | undefined;
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- isLeftEndOfDisplayedRegion?: boolean | undefined;
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- }[];
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- readonly visibleLocStrings: string;
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- readonly coarseVisibleLocStrings: string;
192
- } & {
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- clearView(): void;
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- setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
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- afterAttach(): void;
196
- } & {
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- exportSvg(opts?: import("..").ExportSvgOptions): Promise<void>;
198
- } & {
199
- rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
200
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
201
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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- } & {
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- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
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- offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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- bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
218
- tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
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- hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
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- trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
225
- }, {
226
- width: number;
227
- } & {
228
- menuItems(): import("@jbrowse/core/ui").MenuItem[];
229
- } & {
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- setDisplayName(name: string): void;
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- setWidth(newWidth: number): void;
232
- } & {
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- volatileWidth: number | undefined;
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- minimumBlockWidth: number;
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- draggingTrackId: string | undefined;
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- volatileError: Error | undefined;
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- afterDisplayedRegionsSetCallbacks: Function[];
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- scaleFactor: number;
239
- trackRefs: {
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- [key: string]: any;
241
- };
242
- coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
243
- coarseTotalBp: number;
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- leftOffset: import("..").BpOffset | undefined;
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- rightOffset: import("..").BpOffset | undefined;
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- searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
247
- searchQuery: string | undefined;
248
- seqDialogDisplayed: boolean;
249
- } & {
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- readonly width: number;
251
- readonly interRegionPaddingWidth: number;
252
- } & {
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- readonly assemblyErrors: string;
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- readonly assembliesInitialized: boolean;
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- readonly initialized: boolean;
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- readonly hasDisplayedRegions: boolean;
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- readonly isSearchDialogDisplayed: boolean;
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- readonly scaleBarHeight: number;
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- readonly headerHeight: number;
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- readonly trackHeights: any;
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- readonly trackHeightsWithResizeHandles: any;
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- readonly height: any;
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- readonly totalBp: number;
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- readonly maxBpPerPx: number;
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- readonly minBpPerPx: number;
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- readonly error: string | Error;
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- readonly maxOffset: number;
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- readonly minOffset: number;
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- readonly displayedRegionsTotalPx: number;
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- renderProps(): any;
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- readonly assemblyNames: string[];
272
- searchScope(assemblyName: string): {
273
- assemblyName: string;
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- includeAggregateIndexes: boolean;
275
- tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
276
- };
277
- bpToPx({ refName, coord, regionNumber, }: {
278
- refName: string;
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- coord: number;
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- regionNumber?: number | undefined;
281
- }): {
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- index: number;
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- offsetPx: number;
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- } | undefined;
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- pxToBp(px: number): {
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- oob: boolean;
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- coord: number;
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- offset: number;
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- index: number;
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- refName: string;
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- start: number;
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- end: number;
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- reversed: boolean;
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- assemblyName: string;
295
- };
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- getTrack(id: string): any;
297
- rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
298
- rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
299
- readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
300
- readonly centerLineInfo: {
301
- oob: boolean;
302
- coord: number;
303
- offset: number;
304
- index: number;
305
- refName: string;
306
- start: number;
307
- end: number;
308
- reversed: boolean;
309
- assemblyName: string;
310
- } | undefined;
311
- } & {
312
- setShowCytobands(flag: boolean): void;
313
- setWidth(newWidth: number): void;
314
- setError(error: Error | undefined): void;
315
- toggleHeader(): void;
316
- toggleHeaderOverview(): void;
317
- scrollTo(offsetPx: number): number;
318
- zoomTo(bpPerPx: number): number;
319
- setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;
320
- setSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query: string | undefined): void;
321
- setSequenceDialogOpen(open: boolean): void;
322
- setNewView(bpPerPx: number, offsetPx: number): void;
323
- horizontallyFlip(): void;
324
- showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
325
- hideTrack(trackId: string): number;
326
- } & {
327
- moveTrack(movingTrackId: string, targetTrackId: string): void;
328
- closeView(): void;
329
- toggleTrack(trackId: string): void;
330
- setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
331
- toggleCenterLine(): void;
332
- setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
333
- activateTrackSelector(): import("@jbrowse/core/util").Widget;
334
- navToLocString(locString: string, optAssemblyName?: string | undefined): void;
335
- navTo(query: import("..").NavLocation): void;
336
- navToMultiple(locations: import("..").NavLocation[]): void;
337
- zoomToDisplayedRegions(leftPx: import("..").BpOffset, rightPx: import("..").BpOffset): void;
338
- getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
339
- start: number;
340
- end: number;
341
- regionNumber?: number | undefined;
342
- reversed?: boolean | undefined;
343
- refName: string;
344
- assemblyName: string;
345
- key: string;
346
- offsetPx: number;
347
- widthPx: number;
348
- variant?: string | undefined;
349
- isLeftEndOfDisplayedRegion?: boolean | undefined;
350
- }[];
351
- afterDisplayedRegionsSet(cb: Function): void;
352
- moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
353
- horizontalScroll(distance: number): number;
354
- centerAt(bp: number, refName: string, regionIndex: number): void;
355
- center(): void;
356
- showAllRegions(): void;
357
- showAllRegionsInAssembly(assemblyName?: string | undefined): void;
358
- setDraggingTrackId(idx?: string | undefined): void;
359
- setScaleFactor(factor: number): void;
360
- } & {
361
- slide: (viewWidths: number) => void;
362
- } & {
363
- zoom: (targetBpPerPx: number) => void;
364
- } & {
365
- readonly canShowCytobands: boolean;
366
- readonly showCytobands: boolean;
367
- readonly anyCytobandsExist: boolean;
368
- readonly cytobandOffset: number;
369
- } & {
370
- menuItems(): import("@jbrowse/core/ui").MenuItem[];
371
- } & {
372
- readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
373
- readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
374
- readonly roundedDynamicBlocks: {
375
- start: number;
376
- end: number;
377
- regionNumber?: number | undefined;
378
- reversed?: boolean | undefined;
379
- refName: string;
380
- assemblyName: string;
381
- key: string;
382
- offsetPx: number;
383
- widthPx: number;
384
- variant?: string | undefined;
385
- isLeftEndOfDisplayedRegion?: boolean | undefined;
386
- }[];
387
- readonly visibleLocStrings: string;
388
- readonly coarseVisibleLocStrings: string;
389
- } & {
390
- clearView(): void;
391
- setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
392
- afterAttach(): void;
393
- } & {
394
- exportSvg(opts?: import("..").ExportSvgOptions): Promise<void>;
395
- } & {
396
- rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
397
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
398
- style?: React.CSSProperties | undefined;
399
- className?: string | undefined;
400
- } & React.RefAttributes<unknown>>;
401
- export default _default;
1
+ import React from 'react';
2
+ declare const _default: React.ForwardRefExoticComponent<{
3
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
4
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
+ displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
6
+ } & {
7
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
8
+ type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
9
+ offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
10
+ bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
11
+ displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
12
+ refName: import("mobx-state-tree").ISimpleType<string>;
13
+ start: import("mobx-state-tree").ISimpleType<number>;
14
+ end: import("mobx-state-tree").ISimpleType<number>;
15
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
16
+ } & {
17
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
18
+ }, {
19
+ setRefName(newRefName: string): void;
20
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
21
+ tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
22
+ hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
23
+ hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
24
+ trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
25
+ trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
26
+ showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
27
+ showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
28
+ }> & {
29
+ width: number;
30
+ } & {
31
+ menuItems(): import("@jbrowse/core/ui").MenuItem[];
32
+ } & {
33
+ setDisplayName(name: string): void;
34
+ setWidth(newWidth: number): void;
35
+ } & {
36
+ volatileWidth: number | undefined;
37
+ minimumBlockWidth: number;
38
+ draggingTrackId: string | undefined;
39
+ volatileError: Error | undefined;
40
+ afterDisplayedRegionsSetCallbacks: Function[];
41
+ scaleFactor: number;
42
+ trackRefs: {
43
+ [key: string]: any;
44
+ };
45
+ coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
46
+ coarseTotalBp: number;
47
+ leftOffset: import("..").BpOffset | undefined;
48
+ rightOffset: import("..").BpOffset | undefined;
49
+ searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
50
+ searchQuery: string | undefined;
51
+ seqDialogDisplayed: boolean;
52
+ } & {
53
+ readonly width: number;
54
+ readonly interRegionPaddingWidth: number;
55
+ } & {
56
+ readonly assemblyErrors: string;
57
+ readonly assembliesInitialized: boolean;
58
+ readonly initialized: boolean;
59
+ readonly hasDisplayedRegions: boolean;
60
+ readonly isSearchDialogDisplayed: boolean;
61
+ readonly scaleBarHeight: number;
62
+ readonly headerHeight: number;
63
+ readonly trackHeights: any;
64
+ readonly trackHeightsWithResizeHandles: any;
65
+ readonly height: any;
66
+ readonly totalBp: number;
67
+ readonly maxBpPerPx: number;
68
+ readonly minBpPerPx: number;
69
+ readonly error: string | Error;
70
+ readonly maxOffset: number;
71
+ readonly minOffset: number;
72
+ readonly displayedRegionsTotalPx: number;
73
+ renderProps(): any;
74
+ readonly assemblyNames: string[];
75
+ searchScope(assemblyName: string): {
76
+ assemblyName: string;
77
+ includeAggregateIndexes: boolean;
78
+ tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
79
+ };
80
+ bpToPx({ refName, coord, regionNumber, }: {
81
+ refName: string;
82
+ coord: number;
83
+ regionNumber?: number | undefined;
84
+ }): {
85
+ index: number;
86
+ offsetPx: number;
87
+ } | undefined;
88
+ pxToBp(px: number): {
89
+ oob: boolean;
90
+ coord: number;
91
+ offset: number;
92
+ index: number;
93
+ refName: string;
94
+ start: number;
95
+ end: number;
96
+ reversed: boolean;
97
+ assemblyName: string;
98
+ };
99
+ getTrack(id: string): any;
100
+ rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
101
+ rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
102
+ readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
103
+ readonly centerLineInfo: {
104
+ oob: boolean;
105
+ coord: number;
106
+ offset: number;
107
+ index: number;
108
+ refName: string;
109
+ start: number;
110
+ end: number;
111
+ reversed: boolean;
112
+ assemblyName: string;
113
+ } | undefined;
114
+ } & {
115
+ setShowCytobands(flag: boolean): void;
116
+ setWidth(newWidth: number): void;
117
+ setError(error: Error | undefined): void;
118
+ toggleHeader(): void;
119
+ toggleHeaderOverview(): void;
120
+ scrollTo(offsetPx: number): number;
121
+ zoomTo(bpPerPx: number): number;
122
+ setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;
123
+ setSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query: string | undefined): void;
124
+ setSequenceDialogOpen(open: boolean): void;
125
+ setNewView(bpPerPx: number, offsetPx: number): void;
126
+ horizontallyFlip(): void;
127
+ showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
128
+ hideTrack(trackId: string): number;
129
+ } & {
130
+ moveTrack(movingTrackId: string, targetTrackId: string): void;
131
+ closeView(): void;
132
+ toggleTrack(trackId: string): void;
133
+ setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
134
+ toggleCenterLine(): void;
135
+ setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
136
+ activateTrackSelector(): import("@jbrowse/core/util").Widget;
137
+ navToLocString(locString: string, optAssemblyName?: string | undefined): void;
138
+ navTo(query: import("..").NavLocation): void;
139
+ navToMultiple(locations: import("..").NavLocation[]): void;
140
+ zoomToDisplayedRegions(leftPx: import("..").BpOffset, rightPx: import("..").BpOffset): void;
141
+ getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
142
+ start: number;
143
+ end: number;
144
+ regionNumber?: number | undefined;
145
+ reversed?: boolean | undefined;
146
+ refName: string;
147
+ assemblyName: string;
148
+ key: string;
149
+ offsetPx: number;
150
+ widthPx: number;
151
+ variant?: string | undefined;
152
+ isLeftEndOfDisplayedRegion?: boolean | undefined;
153
+ }[];
154
+ afterDisplayedRegionsSet(cb: Function): void;
155
+ moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
156
+ horizontalScroll(distance: number): number;
157
+ centerAt(bp: number, refName: string, regionIndex: number): void;
158
+ center(): void;
159
+ showAllRegions(): void;
160
+ showAllRegionsInAssembly(assemblyName?: string | undefined): void;
161
+ setDraggingTrackId(idx?: string | undefined): void;
162
+ setScaleFactor(factor: number): void;
163
+ } & {
164
+ slide: (viewWidths: number) => void;
165
+ } & {
166
+ zoom: (targetBpPerPx: number) => void;
167
+ } & {
168
+ readonly canShowCytobands: boolean;
169
+ readonly showCytobands: boolean;
170
+ readonly anyCytobandsExist: boolean;
171
+ readonly cytobandOffset: number;
172
+ } & {
173
+ menuItems(): import("@jbrowse/core/ui").MenuItem[];
174
+ } & {
175
+ readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
176
+ readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
177
+ readonly roundedDynamicBlocks: {
178
+ start: number;
179
+ end: number;
180
+ regionNumber?: number | undefined;
181
+ reversed?: boolean | undefined;
182
+ refName: string;
183
+ assemblyName: string;
184
+ key: string;
185
+ offsetPx: number;
186
+ widthPx: number;
187
+ variant?: string | undefined;
188
+ isLeftEndOfDisplayedRegion?: boolean | undefined;
189
+ }[];
190
+ readonly visibleLocStrings: string;
191
+ readonly coarseVisibleLocStrings: string;
192
+ } & {
193
+ clearView(): void;
194
+ setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
195
+ afterAttach(): void;
196
+ } & {
197
+ exportSvg(opts?: import("..").ExportSvgOptions): Promise<void>;
198
+ } & {
199
+ rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
200
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
201
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
202
+ displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
203
+ } & {
204
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
205
+ type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
206
+ offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
207
+ bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
208
+ displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
209
+ refName: import("mobx-state-tree").ISimpleType<string>;
210
+ start: import("mobx-state-tree").ISimpleType<number>;
211
+ end: import("mobx-state-tree").ISimpleType<number>;
212
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
213
+ } & {
214
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
215
+ }, {
216
+ setRefName(newRefName: string): void;
217
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
218
+ tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
219
+ hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
220
+ hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
221
+ trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
222
+ trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
223
+ showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
224
+ showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
225
+ }, {
226
+ width: number;
227
+ } & {
228
+ menuItems(): import("@jbrowse/core/ui").MenuItem[];
229
+ } & {
230
+ setDisplayName(name: string): void;
231
+ setWidth(newWidth: number): void;
232
+ } & {
233
+ volatileWidth: number | undefined;
234
+ minimumBlockWidth: number;
235
+ draggingTrackId: string | undefined;
236
+ volatileError: Error | undefined;
237
+ afterDisplayedRegionsSetCallbacks: Function[];
238
+ scaleFactor: number;
239
+ trackRefs: {
240
+ [key: string]: any;
241
+ };
242
+ coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
243
+ coarseTotalBp: number;
244
+ leftOffset: import("..").BpOffset | undefined;
245
+ rightOffset: import("..").BpOffset | undefined;
246
+ searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
247
+ searchQuery: string | undefined;
248
+ seqDialogDisplayed: boolean;
249
+ } & {
250
+ readonly width: number;
251
+ readonly interRegionPaddingWidth: number;
252
+ } & {
253
+ readonly assemblyErrors: string;
254
+ readonly assembliesInitialized: boolean;
255
+ readonly initialized: boolean;
256
+ readonly hasDisplayedRegions: boolean;
257
+ readonly isSearchDialogDisplayed: boolean;
258
+ readonly scaleBarHeight: number;
259
+ readonly headerHeight: number;
260
+ readonly trackHeights: any;
261
+ readonly trackHeightsWithResizeHandles: any;
262
+ readonly height: any;
263
+ readonly totalBp: number;
264
+ readonly maxBpPerPx: number;
265
+ readonly minBpPerPx: number;
266
+ readonly error: string | Error;
267
+ readonly maxOffset: number;
268
+ readonly minOffset: number;
269
+ readonly displayedRegionsTotalPx: number;
270
+ renderProps(): any;
271
+ readonly assemblyNames: string[];
272
+ searchScope(assemblyName: string): {
273
+ assemblyName: string;
274
+ includeAggregateIndexes: boolean;
275
+ tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
276
+ };
277
+ bpToPx({ refName, coord, regionNumber, }: {
278
+ refName: string;
279
+ coord: number;
280
+ regionNumber?: number | undefined;
281
+ }): {
282
+ index: number;
283
+ offsetPx: number;
284
+ } | undefined;
285
+ pxToBp(px: number): {
286
+ oob: boolean;
287
+ coord: number;
288
+ offset: number;
289
+ index: number;
290
+ refName: string;
291
+ start: number;
292
+ end: number;
293
+ reversed: boolean;
294
+ assemblyName: string;
295
+ };
296
+ getTrack(id: string): any;
297
+ rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
298
+ rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
299
+ readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
300
+ readonly centerLineInfo: {
301
+ oob: boolean;
302
+ coord: number;
303
+ offset: number;
304
+ index: number;
305
+ refName: string;
306
+ start: number;
307
+ end: number;
308
+ reversed: boolean;
309
+ assemblyName: string;
310
+ } | undefined;
311
+ } & {
312
+ setShowCytobands(flag: boolean): void;
313
+ setWidth(newWidth: number): void;
314
+ setError(error: Error | undefined): void;
315
+ toggleHeader(): void;
316
+ toggleHeaderOverview(): void;
317
+ scrollTo(offsetPx: number): number;
318
+ zoomTo(bpPerPx: number): number;
319
+ setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;
320
+ setSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query: string | undefined): void;
321
+ setSequenceDialogOpen(open: boolean): void;
322
+ setNewView(bpPerPx: number, offsetPx: number): void;
323
+ horizontallyFlip(): void;
324
+ showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
325
+ hideTrack(trackId: string): number;
326
+ } & {
327
+ moveTrack(movingTrackId: string, targetTrackId: string): void;
328
+ closeView(): void;
329
+ toggleTrack(trackId: string): void;
330
+ setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
331
+ toggleCenterLine(): void;
332
+ setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
333
+ activateTrackSelector(): import("@jbrowse/core/util").Widget;
334
+ navToLocString(locString: string, optAssemblyName?: string | undefined): void;
335
+ navTo(query: import("..").NavLocation): void;
336
+ navToMultiple(locations: import("..").NavLocation[]): void;
337
+ zoomToDisplayedRegions(leftPx: import("..").BpOffset, rightPx: import("..").BpOffset): void;
338
+ getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
339
+ start: number;
340
+ end: number;
341
+ regionNumber?: number | undefined;
342
+ reversed?: boolean | undefined;
343
+ refName: string;
344
+ assemblyName: string;
345
+ key: string;
346
+ offsetPx: number;
347
+ widthPx: number;
348
+ variant?: string | undefined;
349
+ isLeftEndOfDisplayedRegion?: boolean | undefined;
350
+ }[];
351
+ afterDisplayedRegionsSet(cb: Function): void;
352
+ moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
353
+ horizontalScroll(distance: number): number;
354
+ centerAt(bp: number, refName: string, regionIndex: number): void;
355
+ center(): void;
356
+ showAllRegions(): void;
357
+ showAllRegionsInAssembly(assemblyName?: string | undefined): void;
358
+ setDraggingTrackId(idx?: string | undefined): void;
359
+ setScaleFactor(factor: number): void;
360
+ } & {
361
+ slide: (viewWidths: number) => void;
362
+ } & {
363
+ zoom: (targetBpPerPx: number) => void;
364
+ } & {
365
+ readonly canShowCytobands: boolean;
366
+ readonly showCytobands: boolean;
367
+ readonly anyCytobandsExist: boolean;
368
+ readonly cytobandOffset: number;
369
+ } & {
370
+ menuItems(): import("@jbrowse/core/ui").MenuItem[];
371
+ } & {
372
+ readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
373
+ readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
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+ readonly roundedDynamicBlocks: {
375
+ start: number;
376
+ end: number;
377
+ regionNumber?: number | undefined;
378
+ reversed?: boolean | undefined;
379
+ refName: string;
380
+ assemblyName: string;
381
+ key: string;
382
+ offsetPx: number;
383
+ widthPx: number;
384
+ variant?: string | undefined;
385
+ isLeftEndOfDisplayedRegion?: boolean | undefined;
386
+ }[];
387
+ readonly visibleLocStrings: string;
388
+ readonly coarseVisibleLocStrings: string;
389
+ } & {
390
+ clearView(): void;
391
+ setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
392
+ afterAttach(): void;
393
+ } & {
394
+ exportSvg(opts?: import("..").ExportSvgOptions): Promise<void>;
395
+ } & {
396
+ rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
397
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
398
+ style?: React.CSSProperties | undefined;
399
+ className?: string | undefined;
400
+ } & React.RefAttributes<unknown>>;
401
+ export default _default;