@jbrowse/plugin-linear-genome-view 1.6.9 → 1.7.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +232 -0
- package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
- package/dist/BaseLinearDisplay/components/Block.js +86 -0
- package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
- package/dist/BaseLinearDisplay/components/LinearBlocks.js +110 -0
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +192 -0
- package/dist/BaseLinearDisplay/index.d.ts +5 -5
- package/dist/BaseLinearDisplay/index.js +41 -0
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +763 -0
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +24 -0
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +328 -0
- package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
- package/dist/LinearBareDisplay/configSchema.js +19 -0
- package/dist/LinearBareDisplay/index.d.ts +2 -2
- package/dist/LinearBareDisplay/index.js +21 -0
- package/dist/LinearBareDisplay/index.test.js +33 -0
- package/dist/LinearBareDisplay/model.d.ts +192 -192
- package/dist/LinearBareDisplay/model.js +44 -0
- package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js +94 -0
- package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
- package/dist/LinearBasicDisplay/configSchema.js +25 -0
- package/dist/LinearBasicDisplay/index.d.ts +2 -2
- package/dist/LinearBasicDisplay/index.js +23 -0
- package/dist/LinearBasicDisplay/model.d.ts +213 -213
- package/dist/LinearBasicDisplay/model.js +162 -0
- package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
- package/dist/LinearGenomeView/components/CenterLine.js +80 -0
- package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +137 -0
- package/dist/LinearGenomeView/components/Header.d.ts +7 -7
- package/dist/LinearGenomeView/components/Header.js +144 -0
- package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
- package/dist/LinearGenomeView/components/HelpDialog.js +48 -0
- package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
- package/dist/LinearGenomeView/components/ImportForm.js +330 -0
- package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
- package/dist/LinearGenomeView/components/LinearGenomeView.js +129 -0
- package/dist/LinearGenomeView/components/LinearGenomeView.test.js +234 -0
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +349 -0
- package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
- package/dist/LinearGenomeView/components/MiniControls.js +83 -0
- package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
- package/dist/LinearGenomeView/components/OverviewRubberBand.js +310 -0
- package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
- package/dist/LinearGenomeView/components/OverviewScaleBar.js +403 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +331 -0
- package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
- package/dist/LinearGenomeView/components/RubberBand.js +309 -0
- package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
- package/dist/LinearGenomeView/components/Ruler.js +101 -0
- package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
- package/dist/LinearGenomeView/components/ScaleBar.js +184 -0
- package/dist/LinearGenomeView/components/ScaleBar.test.js +180 -0
- package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
- package/dist/LinearGenomeView/components/SearchBox.js +201 -0
- package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +159 -0
- package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
- package/dist/LinearGenomeView/components/SequenceDialog.js +304 -0
- package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
- package/dist/LinearGenomeView/components/TrackContainer.js +179 -0
- package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
- package/dist/LinearGenomeView/components/TrackLabel.js +165 -0
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
- package/dist/LinearGenomeView/components/TracksContainer.js +214 -0
- package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
- package/dist/LinearGenomeView/components/VerticalGuides.js +116 -0
- package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
- package/dist/LinearGenomeView/components/ZoomControls.js +92 -0
- package/dist/LinearGenomeView/components/util.d.ts +2 -2
- package/dist/LinearGenomeView/components/util.js +16 -0
- package/dist/LinearGenomeView/index.d.ts +292 -292
- package/dist/LinearGenomeView/index.js +1418 -0
- package/dist/LinearGenomeView/index.test.js +1170 -0
- package/dist/LinearGenomeView/util.d.ts +14 -14
- package/dist/LinearGenomeView/util.js +93 -0
- package/dist/LinearGenomeView/util.test.js +78 -0
- package/dist/index.d.ts +565 -565
- package/dist/index.js +293 -6
- package/package.json +6 -9
- package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +2 -0
- package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +10 -8
- package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +1 -1
- package/src/LinearBasicDisplay/model.ts +17 -18
- package/src/LinearGenomeView/components/Header.tsx +1 -1
- package/src/LinearGenomeView/components/ImportForm.tsx +10 -4
- package/src/LinearGenomeView/components/LinearGenomeView.test.js +1 -0
- package/src/LinearGenomeView/components/OverviewScaleBar.tsx +2 -2
- package/src/LinearGenomeView/components/RubberBand.tsx +14 -24
- package/src/LinearGenomeView/components/ScaleBar.test.tsx +1 -0
- package/src/LinearGenomeView/components/ScaleBar.tsx +3 -6
- package/src/LinearGenomeView/components/SequenceDialog.tsx +1 -1
- package/src/LinearGenomeView/components/TrackLabel.tsx +1 -1
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +0 -4
- package/src/LinearGenomeView/index.tsx +2 -3
- package/dist/LinearBareDisplay/index.test.d.ts +0 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
- package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
- package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
- package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
- package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
- package/dist/plugin-linear-genome-view.esm.js +0 -8105
- package/dist/plugin-linear-genome-view.esm.js.map +0 -1
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import React from 'react';
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declare const _default: React.ForwardRefExoticComponent<{
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
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offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
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hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
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trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}> & {
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width: number;
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} & {
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menuItems(): import("@jbrowse/core/ui").MenuItem[];
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} & {
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setDisplayName(name: string): void;
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setWidth(newWidth: number): void;
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} & {
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volatileWidth: number | undefined;
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minimumBlockWidth: number;
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draggingTrackId: string | undefined;
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volatileError: Error | undefined;
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afterDisplayedRegionsSetCallbacks: Function[];
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scaleFactor: number;
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trackRefs: {
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[key: string]: any;
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};
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coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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coarseTotalBp: number;
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leftOffset: import("..").BpOffset | undefined;
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rightOffset: import("..").BpOffset | undefined;
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searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
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searchQuery: string | undefined;
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seqDialogDisplayed: boolean;
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} & {
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readonly width: number;
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readonly interRegionPaddingWidth: number;
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} & {
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readonly assemblyErrors: string;
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readonly assembliesInitialized: boolean;
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readonly initialized: boolean;
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readonly hasDisplayedRegions: boolean;
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readonly isSearchDialogDisplayed: boolean;
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readonly scaleBarHeight: number;
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readonly headerHeight: number;
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readonly trackHeights: any;
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readonly trackHeightsWithResizeHandles: any;
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readonly height: any;
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readonly totalBp: number;
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readonly maxBpPerPx: number;
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readonly minBpPerPx: number;
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readonly error: string | Error;
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readonly maxOffset: number;
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readonly minOffset: number;
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readonly displayedRegionsTotalPx: number;
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renderProps(): any;
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readonly assemblyNames: string[];
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searchScope(assemblyName: string): {
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assemblyName: string;
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includeAggregateIndexes: boolean;
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tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
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};
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bpToPx({ refName, coord, regionNumber, }: {
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regionNumber?: number | undefined;
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}): {
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offsetPx: number;
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pxToBp(px: number): {
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coord: number;
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};
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getTrack(id: string): any;
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rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
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rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
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readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
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readonly centerLineInfo: {
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coord: number;
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} | undefined;
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} & {
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setShowCytobands(flag: boolean): void;
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setWidth(newWidth: number): void;
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setError(error: Error | undefined): void;
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toggleHeader(): void;
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toggleHeaderOverview(): void;
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scrollTo(offsetPx: number): number;
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zoomTo(bpPerPx: number): number;
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setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;
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setSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query: string | undefined): void;
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setSequenceDialogOpen(open: boolean): void;
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setNewView(bpPerPx: number, offsetPx: number): void;
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horizontallyFlip(): void;
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showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
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hideTrack(trackId: string): number;
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moveTrack(movingTrackId: string, targetTrackId: string): void;
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closeView(): void;
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toggleTrack(trackId: string): void;
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setTrackLabels(setting: "
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toggleCenterLine(): void;
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setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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activateTrackSelector(): import("@jbrowse/core/util").Widget;
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navToLocString(locString: string, optAssemblyName?: string | undefined): void;
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zoomToDisplayedRegions(leftPx: import("..").BpOffset, rightPx: import("..").BpOffset): void;
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getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
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regionNumber?: number | undefined;
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offsetPx: number;
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variant?: string | undefined;
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}[];
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afterDisplayedRegionsSet(cb: Function): void;
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moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
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horizontalScroll(distance: number): number;
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centerAt(bp: number, refName: string, regionIndex: number): void;
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center(): void;
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showAllRegions(): void;
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showAllRegionsInAssembly(assemblyName?: string | undefined): void;
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setDraggingTrackId(idx?: string | undefined): void;
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setScaleFactor(factor: number): void;
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slide: (viewWidths: number) => void;
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zoom: (targetBpPerPx: number) => void;
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} & {
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readonly canShowCytobands: boolean;
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readonly anyCytobandsExist: boolean;
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readonly cytobandOffset: number;
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} & {
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menuItems(): import("@jbrowse/core/ui").MenuItem[];
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} & {
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readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
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readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
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readonly roundedDynamicBlocks: {
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regionNumber?: number | undefined;
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reversed?: boolean | undefined;
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refName: string;
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assemblyName: string;
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key: string;
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offsetPx: number;
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widthPx: number;
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variant?: string | undefined;
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isLeftEndOfDisplayedRegion?: boolean | undefined;
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}[];
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readonly visibleLocStrings: string;
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readonly coarseVisibleLocStrings: string;
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} & {
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clearView(): void;
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setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
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afterAttach(): void;
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} & {
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exportSvg(opts?: import("..").ExportSvgOptions): Promise<void>;
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198
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} & {
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199
|
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rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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200
|
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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205
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type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
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206
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offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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207
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bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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208
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displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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213
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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216
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setRefName(newRefName: string): void;
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217
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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218
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tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
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219
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hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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220
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hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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221
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trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
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trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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}, {
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width: number;
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} & {
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menuItems(): import("@jbrowse/core/ui").MenuItem[];
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} & {
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setDisplayName(name: string): void;
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setWidth(newWidth: number): void;
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} & {
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volatileWidth: number | undefined;
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234
|
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minimumBlockWidth: number;
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draggingTrackId: string | undefined;
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236
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volatileError: Error | undefined;
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237
|
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afterDisplayedRegionsSetCallbacks: Function[];
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scaleFactor: number;
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trackRefs: {
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[key: string]: any;
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241
|
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};
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|
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coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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243
|
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coarseTotalBp: number;
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244
|
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leftOffset: import("..").BpOffset | undefined;
|
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245
|
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rightOffset: import("..").BpOffset | undefined;
|
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246
|
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searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
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|
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searchQuery: string | undefined;
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|
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seqDialogDisplayed: boolean;
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|
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} & {
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250
|
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readonly width: number;
|
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251
|
-
readonly interRegionPaddingWidth: number;
|
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252
|
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} & {
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253
|
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readonly assemblyErrors: string;
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254
|
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readonly assembliesInitialized: boolean;
|
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255
|
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readonly initialized: boolean;
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256
|
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readonly hasDisplayedRegions: boolean;
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257
|
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readonly isSearchDialogDisplayed: boolean;
|
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258
|
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readonly scaleBarHeight: number;
|
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259
|
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readonly headerHeight: number;
|
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260
|
-
readonly trackHeights: any;
|
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261
|
-
readonly trackHeightsWithResizeHandles: any;
|
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262
|
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readonly height: any;
|
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263
|
-
readonly totalBp: number;
|
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264
|
-
readonly maxBpPerPx: number;
|
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265
|
-
readonly minBpPerPx: number;
|
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266
|
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readonly error: string | Error;
|
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267
|
-
readonly maxOffset: number;
|
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268
|
-
readonly minOffset: number;
|
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269
|
-
readonly displayedRegionsTotalPx: number;
|
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270
|
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renderProps(): any;
|
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271
|
-
readonly assemblyNames: string[];
|
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272
|
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searchScope(assemblyName: string): {
|
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273
|
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assemblyName: string;
|
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274
|
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includeAggregateIndexes: boolean;
|
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275
|
-
tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
|
|
276
|
-
};
|
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277
|
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bpToPx({ refName, coord, regionNumber, }: {
|
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278
|
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refName: string;
|
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279
|
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coord: number;
|
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280
|
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regionNumber?: number | undefined;
|
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281
|
-
}): {
|
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282
|
-
index: number;
|
|
283
|
-
offsetPx: number;
|
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284
|
-
} | undefined;
|
|
285
|
-
pxToBp(px: number): {
|
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286
|
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oob: boolean;
|
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287
|
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coord: number;
|
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288
|
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offset: number;
|
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289
|
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index: number;
|
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290
|
-
refName: string;
|
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291
|
-
start: number;
|
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292
|
-
end: number;
|
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293
|
-
reversed: boolean;
|
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294
|
-
assemblyName: string;
|
|
295
|
-
};
|
|
296
|
-
getTrack(id: string): any;
|
|
297
|
-
rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
|
|
298
|
-
rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
|
|
299
|
-
readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
|
|
300
|
-
readonly centerLineInfo: {
|
|
301
|
-
oob: boolean;
|
|
302
|
-
coord: number;
|
|
303
|
-
offset: number;
|
|
304
|
-
index: number;
|
|
305
|
-
refName: string;
|
|
306
|
-
start: number;
|
|
307
|
-
end: number;
|
|
308
|
-
reversed: boolean;
|
|
309
|
-
assemblyName: string;
|
|
310
|
-
} | undefined;
|
|
311
|
-
} & {
|
|
312
|
-
setShowCytobands(flag: boolean): void;
|
|
313
|
-
setWidth(newWidth: number): void;
|
|
314
|
-
setError(error: Error | undefined): void;
|
|
315
|
-
toggleHeader(): void;
|
|
316
|
-
toggleHeaderOverview(): void;
|
|
317
|
-
scrollTo(offsetPx: number): number;
|
|
318
|
-
zoomTo(bpPerPx: number): number;
|
|
319
|
-
setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;
|
|
320
|
-
setSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query: string | undefined): void;
|
|
321
|
-
setSequenceDialogOpen(open: boolean): void;
|
|
322
|
-
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
323
|
-
horizontallyFlip(): void;
|
|
324
|
-
showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
|
|
325
|
-
hideTrack(trackId: string): number;
|
|
326
|
-
} & {
|
|
327
|
-
moveTrack(movingTrackId: string, targetTrackId: string): void;
|
|
328
|
-
closeView(): void;
|
|
329
|
-
toggleTrack(trackId: string): void;
|
|
330
|
-
setTrackLabels(setting: "
|
|
331
|
-
toggleCenterLine(): void;
|
|
332
|
-
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
333
|
-
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
334
|
-
navToLocString(locString: string, optAssemblyName?: string | undefined): void;
|
|
335
|
-
navTo(query: import("..").NavLocation): void;
|
|
336
|
-
navToMultiple(locations: import("..").NavLocation[]): void;
|
|
337
|
-
zoomToDisplayedRegions(leftPx: import("..").BpOffset, rightPx: import("..").BpOffset): void;
|
|
338
|
-
getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
|
|
339
|
-
start: number;
|
|
340
|
-
end: number;
|
|
341
|
-
regionNumber?: number | undefined;
|
|
342
|
-
reversed?: boolean | undefined;
|
|
343
|
-
refName: string;
|
|
344
|
-
assemblyName: string;
|
|
345
|
-
key: string;
|
|
346
|
-
offsetPx: number;
|
|
347
|
-
widthPx: number;
|
|
348
|
-
variant?: string | undefined;
|
|
349
|
-
isLeftEndOfDisplayedRegion?: boolean | undefined;
|
|
350
|
-
}[];
|
|
351
|
-
afterDisplayedRegionsSet(cb: Function): void;
|
|
352
|
-
moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
|
|
353
|
-
horizontalScroll(distance: number): number;
|
|
354
|
-
centerAt(bp: number, refName: string, regionIndex: number): void;
|
|
355
|
-
center(): void;
|
|
356
|
-
showAllRegions(): void;
|
|
357
|
-
showAllRegionsInAssembly(assemblyName?: string | undefined): void;
|
|
358
|
-
setDraggingTrackId(idx?: string | undefined): void;
|
|
359
|
-
setScaleFactor(factor: number): void;
|
|
360
|
-
} & {
|
|
361
|
-
slide: (viewWidths: number) => void;
|
|
362
|
-
} & {
|
|
363
|
-
zoom: (targetBpPerPx: number) => void;
|
|
364
|
-
} & {
|
|
365
|
-
readonly canShowCytobands: boolean;
|
|
366
|
-
readonly showCytobands: boolean;
|
|
367
|
-
readonly anyCytobandsExist: boolean;
|
|
368
|
-
readonly cytobandOffset: number;
|
|
369
|
-
} & {
|
|
370
|
-
menuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
371
|
-
} & {
|
|
372
|
-
readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
373
|
-
readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
374
|
-
readonly roundedDynamicBlocks: {
|
|
375
|
-
start: number;
|
|
376
|
-
end: number;
|
|
377
|
-
regionNumber?: number | undefined;
|
|
378
|
-
reversed?: boolean | undefined;
|
|
379
|
-
refName: string;
|
|
380
|
-
assemblyName: string;
|
|
381
|
-
key: string;
|
|
382
|
-
offsetPx: number;
|
|
383
|
-
widthPx: number;
|
|
384
|
-
variant?: string | undefined;
|
|
385
|
-
isLeftEndOfDisplayedRegion?: boolean | undefined;
|
|
386
|
-
}[];
|
|
387
|
-
readonly visibleLocStrings: string;
|
|
388
|
-
readonly coarseVisibleLocStrings: string;
|
|
389
|
-
} & {
|
|
390
|
-
clearView(): void;
|
|
391
|
-
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
392
|
-
afterAttach(): void;
|
|
393
|
-
} & {
|
|
394
|
-
exportSvg(opts?: import("..").ExportSvgOptions): Promise<void>;
|
|
395
|
-
} & {
|
|
396
|
-
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
397
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
398
|
-
style?: React.CSSProperties | undefined;
|
|
399
|
-
className?: string | undefined;
|
|
400
|
-
} & React.RefAttributes<unknown>>;
|
|
401
|
-
export default _default;
|
|
1
|
+
import React from 'react';
|
|
2
|
+
declare const _default: React.ForwardRefExoticComponent<{
|
|
3
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
4
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
5
|
+
displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
6
|
+
} & {
|
|
7
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
8
|
+
type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
|
|
9
|
+
offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
10
|
+
bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
11
|
+
displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
12
|
+
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
13
|
+
start: import("mobx-state-tree").ISimpleType<number>;
|
|
14
|
+
end: import("mobx-state-tree").ISimpleType<number>;
|
|
15
|
+
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
16
|
+
} & {
|
|
17
|
+
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
|
18
|
+
}, {
|
|
19
|
+
setRefName(newRefName: string): void;
|
|
20
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
21
|
+
tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
|
|
22
|
+
hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
23
|
+
hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
24
|
+
trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
|
|
25
|
+
trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
26
|
+
showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
27
|
+
showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
28
|
+
}> & {
|
|
29
|
+
width: number;
|
|
30
|
+
} & {
|
|
31
|
+
menuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
32
|
+
} & {
|
|
33
|
+
setDisplayName(name: string): void;
|
|
34
|
+
setWidth(newWidth: number): void;
|
|
35
|
+
} & {
|
|
36
|
+
volatileWidth: number | undefined;
|
|
37
|
+
minimumBlockWidth: number;
|
|
38
|
+
draggingTrackId: string | undefined;
|
|
39
|
+
volatileError: Error | undefined;
|
|
40
|
+
afterDisplayedRegionsSetCallbacks: Function[];
|
|
41
|
+
scaleFactor: number;
|
|
42
|
+
trackRefs: {
|
|
43
|
+
[key: string]: any;
|
|
44
|
+
};
|
|
45
|
+
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
46
|
+
coarseTotalBp: number;
|
|
47
|
+
leftOffset: import("..").BpOffset | undefined;
|
|
48
|
+
rightOffset: import("..").BpOffset | undefined;
|
|
49
|
+
searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
|
|
50
|
+
searchQuery: string | undefined;
|
|
51
|
+
seqDialogDisplayed: boolean;
|
|
52
|
+
} & {
|
|
53
|
+
readonly width: number;
|
|
54
|
+
readonly interRegionPaddingWidth: number;
|
|
55
|
+
} & {
|
|
56
|
+
readonly assemblyErrors: string;
|
|
57
|
+
readonly assembliesInitialized: boolean;
|
|
58
|
+
readonly initialized: boolean;
|
|
59
|
+
readonly hasDisplayedRegions: boolean;
|
|
60
|
+
readonly isSearchDialogDisplayed: boolean;
|
|
61
|
+
readonly scaleBarHeight: number;
|
|
62
|
+
readonly headerHeight: number;
|
|
63
|
+
readonly trackHeights: any;
|
|
64
|
+
readonly trackHeightsWithResizeHandles: any;
|
|
65
|
+
readonly height: any;
|
|
66
|
+
readonly totalBp: number;
|
|
67
|
+
readonly maxBpPerPx: number;
|
|
68
|
+
readonly minBpPerPx: number;
|
|
69
|
+
readonly error: string | Error;
|
|
70
|
+
readonly maxOffset: number;
|
|
71
|
+
readonly minOffset: number;
|
|
72
|
+
readonly displayedRegionsTotalPx: number;
|
|
73
|
+
renderProps(): any;
|
|
74
|
+
readonly assemblyNames: string[];
|
|
75
|
+
searchScope(assemblyName: string): {
|
|
76
|
+
assemblyName: string;
|
|
77
|
+
includeAggregateIndexes: boolean;
|
|
78
|
+
tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
|
|
79
|
+
};
|
|
80
|
+
bpToPx({ refName, coord, regionNumber, }: {
|
|
81
|
+
refName: string;
|
|
82
|
+
coord: number;
|
|
83
|
+
regionNumber?: number | undefined;
|
|
84
|
+
}): {
|
|
85
|
+
index: number;
|
|
86
|
+
offsetPx: number;
|
|
87
|
+
} | undefined;
|
|
88
|
+
pxToBp(px: number): {
|
|
89
|
+
oob: boolean;
|
|
90
|
+
coord: number;
|
|
91
|
+
offset: number;
|
|
92
|
+
index: number;
|
|
93
|
+
refName: string;
|
|
94
|
+
start: number;
|
|
95
|
+
end: number;
|
|
96
|
+
reversed: boolean;
|
|
97
|
+
assemblyName: string;
|
|
98
|
+
};
|
|
99
|
+
getTrack(id: string): any;
|
|
100
|
+
rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
|
|
101
|
+
rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
|
|
102
|
+
readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
|
|
103
|
+
readonly centerLineInfo: {
|
|
104
|
+
oob: boolean;
|
|
105
|
+
coord: number;
|
|
106
|
+
offset: number;
|
|
107
|
+
index: number;
|
|
108
|
+
refName: string;
|
|
109
|
+
start: number;
|
|
110
|
+
end: number;
|
|
111
|
+
reversed: boolean;
|
|
112
|
+
assemblyName: string;
|
|
113
|
+
} | undefined;
|
|
114
|
+
} & {
|
|
115
|
+
setShowCytobands(flag: boolean): void;
|
|
116
|
+
setWidth(newWidth: number): void;
|
|
117
|
+
setError(error: Error | undefined): void;
|
|
118
|
+
toggleHeader(): void;
|
|
119
|
+
toggleHeaderOverview(): void;
|
|
120
|
+
scrollTo(offsetPx: number): number;
|
|
121
|
+
zoomTo(bpPerPx: number): number;
|
|
122
|
+
setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;
|
|
123
|
+
setSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query: string | undefined): void;
|
|
124
|
+
setSequenceDialogOpen(open: boolean): void;
|
|
125
|
+
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
126
|
+
horizontallyFlip(): void;
|
|
127
|
+
showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
|
|
128
|
+
hideTrack(trackId: string): number;
|
|
129
|
+
} & {
|
|
130
|
+
moveTrack(movingTrackId: string, targetTrackId: string): void;
|
|
131
|
+
closeView(): void;
|
|
132
|
+
toggleTrack(trackId: string): void;
|
|
133
|
+
setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
|
|
134
|
+
toggleCenterLine(): void;
|
|
135
|
+
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
136
|
+
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
137
|
+
navToLocString(locString: string, optAssemblyName?: string | undefined): void;
|
|
138
|
+
navTo(query: import("..").NavLocation): void;
|
|
139
|
+
navToMultiple(locations: import("..").NavLocation[]): void;
|
|
140
|
+
zoomToDisplayedRegions(leftPx: import("..").BpOffset, rightPx: import("..").BpOffset): void;
|
|
141
|
+
getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
|
|
142
|
+
start: number;
|
|
143
|
+
end: number;
|
|
144
|
+
regionNumber?: number | undefined;
|
|
145
|
+
reversed?: boolean | undefined;
|
|
146
|
+
refName: string;
|
|
147
|
+
assemblyName: string;
|
|
148
|
+
key: string;
|
|
149
|
+
offsetPx: number;
|
|
150
|
+
widthPx: number;
|
|
151
|
+
variant?: string | undefined;
|
|
152
|
+
isLeftEndOfDisplayedRegion?: boolean | undefined;
|
|
153
|
+
}[];
|
|
154
|
+
afterDisplayedRegionsSet(cb: Function): void;
|
|
155
|
+
moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
|
|
156
|
+
horizontalScroll(distance: number): number;
|
|
157
|
+
centerAt(bp: number, refName: string, regionIndex: number): void;
|
|
158
|
+
center(): void;
|
|
159
|
+
showAllRegions(): void;
|
|
160
|
+
showAllRegionsInAssembly(assemblyName?: string | undefined): void;
|
|
161
|
+
setDraggingTrackId(idx?: string | undefined): void;
|
|
162
|
+
setScaleFactor(factor: number): void;
|
|
163
|
+
} & {
|
|
164
|
+
slide: (viewWidths: number) => void;
|
|
165
|
+
} & {
|
|
166
|
+
zoom: (targetBpPerPx: number) => void;
|
|
167
|
+
} & {
|
|
168
|
+
readonly canShowCytobands: boolean;
|
|
169
|
+
readonly showCytobands: boolean;
|
|
170
|
+
readonly anyCytobandsExist: boolean;
|
|
171
|
+
readonly cytobandOffset: number;
|
|
172
|
+
} & {
|
|
173
|
+
menuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
174
|
+
} & {
|
|
175
|
+
readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
176
|
+
readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
177
|
+
readonly roundedDynamicBlocks: {
|
|
178
|
+
start: number;
|
|
179
|
+
end: number;
|
|
180
|
+
regionNumber?: number | undefined;
|
|
181
|
+
reversed?: boolean | undefined;
|
|
182
|
+
refName: string;
|
|
183
|
+
assemblyName: string;
|
|
184
|
+
key: string;
|
|
185
|
+
offsetPx: number;
|
|
186
|
+
widthPx: number;
|
|
187
|
+
variant?: string | undefined;
|
|
188
|
+
isLeftEndOfDisplayedRegion?: boolean | undefined;
|
|
189
|
+
}[];
|
|
190
|
+
readonly visibleLocStrings: string;
|
|
191
|
+
readonly coarseVisibleLocStrings: string;
|
|
192
|
+
} & {
|
|
193
|
+
clearView(): void;
|
|
194
|
+
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
195
|
+
afterAttach(): void;
|
|
196
|
+
} & {
|
|
197
|
+
exportSvg(opts?: import("..").ExportSvgOptions): Promise<void>;
|
|
198
|
+
} & {
|
|
199
|
+
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
200
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
201
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
202
|
+
displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
203
|
+
} & {
|
|
204
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
205
|
+
type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
|
|
206
|
+
offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
207
|
+
bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
208
|
+
displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
209
|
+
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
210
|
+
start: import("mobx-state-tree").ISimpleType<number>;
|
|
211
|
+
end: import("mobx-state-tree").ISimpleType<number>;
|
|
212
|
+
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
213
|
+
} & {
|
|
214
|
+
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
|
215
|
+
}, {
|
|
216
|
+
setRefName(newRefName: string): void;
|
|
217
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
218
|
+
tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
|
|
219
|
+
hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
220
|
+
hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
221
|
+
trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
|
|
222
|
+
trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
223
|
+
showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
224
|
+
showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
225
|
+
}, {
|
|
226
|
+
width: number;
|
|
227
|
+
} & {
|
|
228
|
+
menuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
229
|
+
} & {
|
|
230
|
+
setDisplayName(name: string): void;
|
|
231
|
+
setWidth(newWidth: number): void;
|
|
232
|
+
} & {
|
|
233
|
+
volatileWidth: number | undefined;
|
|
234
|
+
minimumBlockWidth: number;
|
|
235
|
+
draggingTrackId: string | undefined;
|
|
236
|
+
volatileError: Error | undefined;
|
|
237
|
+
afterDisplayedRegionsSetCallbacks: Function[];
|
|
238
|
+
scaleFactor: number;
|
|
239
|
+
trackRefs: {
|
|
240
|
+
[key: string]: any;
|
|
241
|
+
};
|
|
242
|
+
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
243
|
+
coarseTotalBp: number;
|
|
244
|
+
leftOffset: import("..").BpOffset | undefined;
|
|
245
|
+
rightOffset: import("..").BpOffset | undefined;
|
|
246
|
+
searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
|
|
247
|
+
searchQuery: string | undefined;
|
|
248
|
+
seqDialogDisplayed: boolean;
|
|
249
|
+
} & {
|
|
250
|
+
readonly width: number;
|
|
251
|
+
readonly interRegionPaddingWidth: number;
|
|
252
|
+
} & {
|
|
253
|
+
readonly assemblyErrors: string;
|
|
254
|
+
readonly assembliesInitialized: boolean;
|
|
255
|
+
readonly initialized: boolean;
|
|
256
|
+
readonly hasDisplayedRegions: boolean;
|
|
257
|
+
readonly isSearchDialogDisplayed: boolean;
|
|
258
|
+
readonly scaleBarHeight: number;
|
|
259
|
+
readonly headerHeight: number;
|
|
260
|
+
readonly trackHeights: any;
|
|
261
|
+
readonly trackHeightsWithResizeHandles: any;
|
|
262
|
+
readonly height: any;
|
|
263
|
+
readonly totalBp: number;
|
|
264
|
+
readonly maxBpPerPx: number;
|
|
265
|
+
readonly minBpPerPx: number;
|
|
266
|
+
readonly error: string | Error;
|
|
267
|
+
readonly maxOffset: number;
|
|
268
|
+
readonly minOffset: number;
|
|
269
|
+
readonly displayedRegionsTotalPx: number;
|
|
270
|
+
renderProps(): any;
|
|
271
|
+
readonly assemblyNames: string[];
|
|
272
|
+
searchScope(assemblyName: string): {
|
|
273
|
+
assemblyName: string;
|
|
274
|
+
includeAggregateIndexes: boolean;
|
|
275
|
+
tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
|
|
276
|
+
};
|
|
277
|
+
bpToPx({ refName, coord, regionNumber, }: {
|
|
278
|
+
refName: string;
|
|
279
|
+
coord: number;
|
|
280
|
+
regionNumber?: number | undefined;
|
|
281
|
+
}): {
|
|
282
|
+
index: number;
|
|
283
|
+
offsetPx: number;
|
|
284
|
+
} | undefined;
|
|
285
|
+
pxToBp(px: number): {
|
|
286
|
+
oob: boolean;
|
|
287
|
+
coord: number;
|
|
288
|
+
offset: number;
|
|
289
|
+
index: number;
|
|
290
|
+
refName: string;
|
|
291
|
+
start: number;
|
|
292
|
+
end: number;
|
|
293
|
+
reversed: boolean;
|
|
294
|
+
assemblyName: string;
|
|
295
|
+
};
|
|
296
|
+
getTrack(id: string): any;
|
|
297
|
+
rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
|
|
298
|
+
rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
|
|
299
|
+
readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
|
|
300
|
+
readonly centerLineInfo: {
|
|
301
|
+
oob: boolean;
|
|
302
|
+
coord: number;
|
|
303
|
+
offset: number;
|
|
304
|
+
index: number;
|
|
305
|
+
refName: string;
|
|
306
|
+
start: number;
|
|
307
|
+
end: number;
|
|
308
|
+
reversed: boolean;
|
|
309
|
+
assemblyName: string;
|
|
310
|
+
} | undefined;
|
|
311
|
+
} & {
|
|
312
|
+
setShowCytobands(flag: boolean): void;
|
|
313
|
+
setWidth(newWidth: number): void;
|
|
314
|
+
setError(error: Error | undefined): void;
|
|
315
|
+
toggleHeader(): void;
|
|
316
|
+
toggleHeaderOverview(): void;
|
|
317
|
+
scrollTo(offsetPx: number): number;
|
|
318
|
+
zoomTo(bpPerPx: number): number;
|
|
319
|
+
setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;
|
|
320
|
+
setSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query: string | undefined): void;
|
|
321
|
+
setSequenceDialogOpen(open: boolean): void;
|
|
322
|
+
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
323
|
+
horizontallyFlip(): void;
|
|
324
|
+
showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
|
|
325
|
+
hideTrack(trackId: string): number;
|
|
326
|
+
} & {
|
|
327
|
+
moveTrack(movingTrackId: string, targetTrackId: string): void;
|
|
328
|
+
closeView(): void;
|
|
329
|
+
toggleTrack(trackId: string): void;
|
|
330
|
+
setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
|
|
331
|
+
toggleCenterLine(): void;
|
|
332
|
+
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
333
|
+
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
334
|
+
navToLocString(locString: string, optAssemblyName?: string | undefined): void;
|
|
335
|
+
navTo(query: import("..").NavLocation): void;
|
|
336
|
+
navToMultiple(locations: import("..").NavLocation[]): void;
|
|
337
|
+
zoomToDisplayedRegions(leftPx: import("..").BpOffset, rightPx: import("..").BpOffset): void;
|
|
338
|
+
getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
|
|
339
|
+
start: number;
|
|
340
|
+
end: number;
|
|
341
|
+
regionNumber?: number | undefined;
|
|
342
|
+
reversed?: boolean | undefined;
|
|
343
|
+
refName: string;
|
|
344
|
+
assemblyName: string;
|
|
345
|
+
key: string;
|
|
346
|
+
offsetPx: number;
|
|
347
|
+
widthPx: number;
|
|
348
|
+
variant?: string | undefined;
|
|
349
|
+
isLeftEndOfDisplayedRegion?: boolean | undefined;
|
|
350
|
+
}[];
|
|
351
|
+
afterDisplayedRegionsSet(cb: Function): void;
|
|
352
|
+
moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
|
|
353
|
+
horizontalScroll(distance: number): number;
|
|
354
|
+
centerAt(bp: number, refName: string, regionIndex: number): void;
|
|
355
|
+
center(): void;
|
|
356
|
+
showAllRegions(): void;
|
|
357
|
+
showAllRegionsInAssembly(assemblyName?: string | undefined): void;
|
|
358
|
+
setDraggingTrackId(idx?: string | undefined): void;
|
|
359
|
+
setScaleFactor(factor: number): void;
|
|
360
|
+
} & {
|
|
361
|
+
slide: (viewWidths: number) => void;
|
|
362
|
+
} & {
|
|
363
|
+
zoom: (targetBpPerPx: number) => void;
|
|
364
|
+
} & {
|
|
365
|
+
readonly canShowCytobands: boolean;
|
|
366
|
+
readonly showCytobands: boolean;
|
|
367
|
+
readonly anyCytobandsExist: boolean;
|
|
368
|
+
readonly cytobandOffset: number;
|
|
369
|
+
} & {
|
|
370
|
+
menuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
371
|
+
} & {
|
|
372
|
+
readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
373
|
+
readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
374
|
+
readonly roundedDynamicBlocks: {
|
|
375
|
+
start: number;
|
|
376
|
+
end: number;
|
|
377
|
+
regionNumber?: number | undefined;
|
|
378
|
+
reversed?: boolean | undefined;
|
|
379
|
+
refName: string;
|
|
380
|
+
assemblyName: string;
|
|
381
|
+
key: string;
|
|
382
|
+
offsetPx: number;
|
|
383
|
+
widthPx: number;
|
|
384
|
+
variant?: string | undefined;
|
|
385
|
+
isLeftEndOfDisplayedRegion?: boolean | undefined;
|
|
386
|
+
}[];
|
|
387
|
+
readonly visibleLocStrings: string;
|
|
388
|
+
readonly coarseVisibleLocStrings: string;
|
|
389
|
+
} & {
|
|
390
|
+
clearView(): void;
|
|
391
|
+
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
392
|
+
afterAttach(): void;
|
|
393
|
+
} & {
|
|
394
|
+
exportSvg(opts?: import("..").ExportSvgOptions): Promise<void>;
|
|
395
|
+
} & {
|
|
396
|
+
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
397
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
398
|
+
style?: React.CSSProperties | undefined;
|
|
399
|
+
className?: string | undefined;
|
|
400
|
+
} & React.RefAttributes<unknown>>;
|
|
401
|
+
export default _default;
|