@jbrowse/plugin-data-management 2.17.0 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts +1 -2
- package/dist/AddConnectionWidget/components/AddConnectionWidget.js +31 -62
- package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts +4 -5
- package/dist/AddConnectionWidget/components/ConfigureConnection.js +5 -28
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +2 -3
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +6 -32
- package/dist/AddConnectionWidget/index.d.ts +1 -1
- package/dist/AddConnectionWidget/index.js +18 -8
- package/dist/AddConnectionWidget/model.js +1 -1
- package/dist/AddTrackWidget/components/AddTrackStatusMessage.d.ts +9 -0
- package/dist/AddTrackWidget/components/AddTrackStatusMessage.js +16 -0
- package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts +4 -0
- package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js +19 -0
- package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +2 -3
- package/dist/AddTrackWidget/components/AddTrackWidget.js +7 -35
- package/dist/AddTrackWidget/components/ConfirmTrack.d.ts +2 -3
- package/dist/AddTrackWidget/components/ConfirmTrack.js +38 -97
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +2 -3
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +24 -107
- package/dist/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -3
- package/dist/AddTrackWidget/components/PasteConfigWorkflow.js +31 -51
- package/dist/AddTrackWidget/components/TextIndexingConfig.d.ts +2 -3
- package/dist/AddTrackWidget/components/TextIndexingConfig.js +38 -76
- package/dist/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -3
- package/dist/AddTrackWidget/components/TrackAdapterSelector.js +13 -40
- package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -3
- package/dist/AddTrackWidget/components/TrackSourceSelect.js +4 -10
- package/dist/AddTrackWidget/components/TrackTypeSelector.d.ts +3 -4
- package/dist/AddTrackWidget/components/TrackTypeSelector.js +8 -17
- package/dist/AddTrackWidget/components/Unsupported.d.ts +1 -0
- package/dist/AddTrackWidget/components/Unsupported.js +15 -0
- package/dist/AddTrackWidget/components/doSubmit.d.ts +4 -0
- package/dist/AddTrackWidget/components/doSubmit.js +50 -0
- package/dist/AddTrackWidget/components/util.d.ts +2 -0
- package/dist/AddTrackWidget/components/util.js +15 -0
- package/dist/AddTrackWidget/index.d.ts +1 -1
- package/dist/AddTrackWidget/index.js +18 -8
- package/dist/AddTrackWidget/model.d.ts +16 -84
- package/dist/AddTrackWidget/model.js +46 -94
- package/dist/AssemblyManager/AssemblyAddForm.d.ts +5 -6
- package/dist/AssemblyManager/AssemblyAddForm.js +82 -128
- package/dist/AssemblyManager/AssemblyEditor.d.ts +4 -4
- package/dist/AssemblyManager/AssemblyEditor.js +7 -7
- package/dist/AssemblyManager/AssemblyManager.d.ts +5 -5
- package/dist/AssemblyManager/AssemblyManager.js +19 -55
- package/dist/AssemblyManager/AssemblyTable.d.ts +8 -12
- package/dist/AssemblyManager/AssemblyTable.js +42 -35
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +22 -50
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +7 -35
- package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +21 -11
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +1 -2
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +8 -19
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +3 -4
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +9 -17
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +3 -4
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +14 -27
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +3 -4
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +10 -19
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +21 -58
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +3 -4
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +22 -26
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.d.ts +9 -0
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.js +71 -0
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +3 -5
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +47 -82
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +3 -4
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +17 -112
- package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +4 -5
- package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +7 -32
- package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +5 -9
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +124 -124
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +8 -17
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +3 -4
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +5 -40
- package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +6 -10
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +46 -78
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +3 -4
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +19 -15
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +3 -4
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +6 -8
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +2 -3
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +6 -19
- package/dist/HierarchicalTrackSelectorWidget/components/util.d.ts +4 -4
- package/dist/HierarchicalTrackSelectorWidget/components/util.js +1 -4
- package/dist/HierarchicalTrackSelectorWidget/facetedModel.d.ts +2 -61
- package/dist/HierarchicalTrackSelectorWidget/facetedModel.js +14 -76
- package/dist/HierarchicalTrackSelectorWidget/filterTracks.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.js +0 -13
- package/dist/HierarchicalTrackSelectorWidget/index.d.ts +1 -1
- package/dist/HierarchicalTrackSelectorWidget/index.js +20 -10
- package/dist/HierarchicalTrackSelectorWidget/model.d.ts +3 -177
- package/dist/HierarchicalTrackSelectorWidget/model.js +3 -183
- package/dist/HierarchicalTrackSelectorWidget/util.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/util.js +0 -3
- package/dist/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +2 -3
- package/dist/PluginStoreWidget/components/AddCustomPluginDialog.js +19 -59
- package/dist/PluginStoreWidget/components/DeletePluginDialog.d.ts +1 -2
- package/dist/PluginStoreWidget/components/DeletePluginDialog.js +10 -23
- package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts +3 -4
- package/dist/PluginStoreWidget/components/InstalledPlugin.js +45 -37
- package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts +3 -4
- package/dist/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
- package/dist/PluginStoreWidget/components/PluginCard.d.ts +4 -6
- package/dist/PluginStoreWidget/components/PluginCard.js +25 -55
- package/dist/PluginStoreWidget/components/PluginStoreWidget.d.ts +2 -3
- package/dist/PluginStoreWidget/components/PluginStoreWidget.js +53 -61
- package/dist/PluginStoreWidget/components/util.d.ts +1 -1
- package/dist/PluginStoreWidget/components/util.js +0 -1
- package/dist/PluginStoreWidget/index.d.ts +1 -1
- package/dist/PluginStoreWidget/index.js +18 -8
- package/dist/PluginStoreWidget/model.d.ts +2 -8
- package/dist/PluginStoreWidget/model.js +1 -19
- package/dist/{ucsc-trackhub → UCSCTrackHub}/configSchema.d.ts +0 -6
- package/dist/{ucsc-trackhub → UCSCTrackHub}/configSchema.js +2 -14
- package/{esm/ucsc-trackhub → dist/UCSCTrackHub}/doConnect.d.ts +1 -1
- package/dist/{ucsc-trackhub → UCSCTrackHub}/doConnect.js +19 -15
- package/dist/{ucsc-trackhub → UCSCTrackHub}/index.d.ts +1 -1
- package/dist/{ucsc-trackhub → UCSCTrackHub}/index.js +11 -9
- package/dist/{ucsc-trackhub → UCSCTrackHub}/model.d.ts +1 -14
- package/dist/{ucsc-trackhub → UCSCTrackHub}/model.js +18 -23
- package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.js +0 -3
- package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.d.ts +54 -37
- package/dist/UCSCTrackHub/ucscTrackHub.js +170 -0
- package/dist/UCSCTrackHub/util.d.ts +22 -0
- package/dist/UCSCTrackHub/util.js +41 -0
- package/dist/index.d.ts +11 -11
- package/dist/index.js +21 -11
- package/esm/AddConnectionWidget/components/AddConnectionWidget.d.ts +1 -2
- package/esm/AddConnectionWidget/components/AddConnectionWidget.js +31 -39
- package/esm/AddConnectionWidget/components/ConfigureConnection.d.ts +4 -5
- package/esm/AddConnectionWidget/components/ConfigureConnection.js +5 -5
- package/esm/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +2 -3
- package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js +6 -9
- package/esm/AddConnectionWidget/index.d.ts +1 -1
- package/esm/AddConnectionWidget/index.js +1 -1
- package/esm/AddConnectionWidget/model.js +1 -1
- package/esm/AddTrackWidget/components/AddTrackStatusMessage.d.ts +9 -0
- package/esm/AddTrackWidget/components/AddTrackStatusMessage.js +13 -0
- package/esm/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts +4 -0
- package/esm/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js +13 -0
- package/esm/AddTrackWidget/components/AddTrackWidget.d.ts +2 -3
- package/esm/AddTrackWidget/components/AddTrackWidget.js +7 -12
- package/esm/AddTrackWidget/components/ConfirmTrack.d.ts +2 -3
- package/esm/AddTrackWidget/components/ConfirmTrack.js +39 -75
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +2 -3
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +25 -85
- package/esm/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -3
- package/esm/AddTrackWidget/components/PasteConfigWorkflow.js +31 -28
- package/esm/AddTrackWidget/components/TextIndexingConfig.d.ts +2 -3
- package/esm/AddTrackWidget/components/TextIndexingConfig.js +39 -54
- package/esm/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -3
- package/esm/AddTrackWidget/components/TrackAdapterSelector.js +13 -37
- package/esm/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -3
- package/esm/AddTrackWidget/components/TrackSourceSelect.js +4 -7
- package/esm/AddTrackWidget/components/TrackTypeSelector.d.ts +3 -4
- package/esm/AddTrackWidget/components/TrackTypeSelector.js +8 -14
- package/esm/AddTrackWidget/components/Unsupported.d.ts +1 -0
- package/esm/AddTrackWidget/components/Unsupported.js +12 -0
- package/esm/AddTrackWidget/components/doSubmit.d.ts +4 -0
- package/esm/AddTrackWidget/components/doSubmit.js +47 -0
- package/esm/AddTrackWidget/components/util.d.ts +2 -0
- package/esm/AddTrackWidget/components/util.js +12 -0
- package/esm/AddTrackWidget/index.d.ts +1 -1
- package/esm/AddTrackWidget/index.js +1 -1
- package/esm/AddTrackWidget/model.d.ts +16 -84
- package/esm/AddTrackWidget/model.js +43 -94
- package/esm/AssemblyManager/AssemblyAddForm.d.ts +5 -6
- package/esm/AssemblyManager/AssemblyAddForm.js +82 -102
- package/esm/AssemblyManager/AssemblyEditor.d.ts +4 -4
- package/esm/AssemblyManager/AssemblyEditor.js +7 -4
- package/esm/AssemblyManager/AssemblyManager.d.ts +5 -5
- package/esm/AssemblyManager/AssemblyManager.js +19 -32
- package/esm/AssemblyManager/AssemblyTable.d.ts +8 -12
- package/esm/AssemblyManager/AssemblyTable.js +43 -36
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +22 -27
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +7 -12
- package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +21 -11
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +1 -2
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +8 -16
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +3 -4
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +9 -14
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +3 -4
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +14 -27
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +3 -4
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +10 -16
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +21 -35
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +3 -4
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +22 -26
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.d.ts +9 -0
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.js +69 -0
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +3 -5
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +47 -59
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +3 -4
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +17 -89
- package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +4 -5
- package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +7 -9
- package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +5 -9
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +108 -118
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +8 -17
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +3 -4
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +5 -17
- package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +6 -10
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +46 -55
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +3 -4
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +19 -15
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +3 -4
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +6 -8
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +2 -3
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +6 -19
- package/esm/HierarchicalTrackSelectorWidget/components/util.d.ts +4 -4
- package/esm/HierarchicalTrackSelectorWidget/components/util.js +1 -4
- package/esm/HierarchicalTrackSelectorWidget/facetedModel.d.ts +2 -61
- package/esm/HierarchicalTrackSelectorWidget/facetedModel.js +12 -74
- package/esm/HierarchicalTrackSelectorWidget/filterTracks.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/filterTracks.js +1 -1
- package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.js +1 -14
- package/esm/HierarchicalTrackSelectorWidget/index.d.ts +1 -1
- package/esm/HierarchicalTrackSelectorWidget/index.js +3 -3
- package/esm/HierarchicalTrackSelectorWidget/model.d.ts +3 -177
- package/esm/HierarchicalTrackSelectorWidget/model.js +4 -184
- package/esm/HierarchicalTrackSelectorWidget/util.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/util.js +1 -4
- package/esm/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +2 -3
- package/esm/PluginStoreWidget/components/AddCustomPluginDialog.js +19 -36
- package/esm/PluginStoreWidget/components/DeletePluginDialog.d.ts +1 -2
- package/esm/PluginStoreWidget/components/DeletePluginDialog.js +10 -20
- package/esm/PluginStoreWidget/components/InstalledPlugin.d.ts +3 -4
- package/esm/PluginStoreWidget/components/InstalledPlugin.js +28 -30
- package/esm/PluginStoreWidget/components/InstalledPluginsList.d.ts +3 -4
- package/esm/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
- package/esm/PluginStoreWidget/components/PluginCard.d.ts +4 -6
- package/esm/PluginStoreWidget/components/PluginCard.js +27 -34
- package/esm/PluginStoreWidget/components/PluginStoreWidget.d.ts +2 -3
- package/esm/PluginStoreWidget/components/PluginStoreWidget.js +36 -54
- package/esm/PluginStoreWidget/components/util.d.ts +1 -1
- package/esm/PluginStoreWidget/components/util.js +1 -2
- package/esm/PluginStoreWidget/index.d.ts +1 -1
- package/esm/PluginStoreWidget/index.js +1 -1
- package/esm/PluginStoreWidget/model.d.ts +2 -8
- package/esm/PluginStoreWidget/model.js +1 -19
- package/esm/{ucsc-trackhub → UCSCTrackHub}/configSchema.d.ts +0 -6
- package/esm/{ucsc-trackhub → UCSCTrackHub}/configSchema.js +2 -14
- package/{dist/ucsc-trackhub → esm/UCSCTrackHub}/doConnect.d.ts +1 -1
- package/esm/{ucsc-trackhub → UCSCTrackHub}/doConnect.js +12 -8
- package/esm/{ucsc-trackhub → UCSCTrackHub}/index.d.ts +1 -1
- package/esm/UCSCTrackHub/index.js +15 -0
- package/esm/{ucsc-trackhub → UCSCTrackHub}/model.d.ts +1 -14
- package/esm/{ucsc-trackhub → UCSCTrackHub}/model.js +1 -16
- package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.js +0 -3
- package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.d.ts +54 -37
- package/esm/UCSCTrackHub/ucscTrackHub.js +162 -0
- package/esm/UCSCTrackHub/util.d.ts +22 -0
- package/esm/UCSCTrackHub/util.js +33 -0
- package/esm/index.d.ts +11 -11
- package/esm/index.js +3 -3
- package/package.json +4 -3
- package/dist/ucsc-trackhub/ucscTrackHub.js +0 -208
- package/esm/ucsc-trackhub/index.js +0 -13
- package/esm/ucsc-trackhub/ucscTrackHub.js +0 -195
- /package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.d.ts +0 -0
- /package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.d.ts +0 -0
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}, children: [(0, jsx_runtime_1.jsxs)(material_1.Typography, { "data-testid": `htsCategory-${name}`, children: [isOpen ? (0, jsx_runtime_1.jsx)(ArrowDropDown_1.default, {}) : (0, jsx_runtime_1.jsx)(ArrowRight_1.default, {}), name, (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: event => {
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...menuItems,
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], onMenuItemClick: (_event, callback) => {
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callback();
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}, open: Boolean(menuEl), onClose: () => {
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setMenuEl(null);
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} })) : null] }));
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@@ -1,6 +1,5 @@
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import
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import { AnyConfigurationModel } from '@jbrowse/core/configuration';
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import { NodeData } from '../util';
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import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
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export interface InfoArgs {
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target: HTMLElement;
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id: string;
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@@ -8,4 +7,4 @@ export interface InfoArgs {
|
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|
}
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export default function TrackLabel({ data }: {
|
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data: NodeData;
|
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}):
|
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+
}): import("react/jsx-runtime").JSX.Element;
|
|
@@ -4,12 +4,11 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
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|
};
|
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|
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|
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|
exports.default = TrackLabel;
|
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|
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const
|
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|
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const jsx_runtime_1 = require("react/jsx-runtime");
|
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const configuration_1 = require("@jbrowse/core/configuration");
|
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|
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const SanitizedHTML_1 = __importDefault(require("@jbrowse/core/ui/SanitizedHTML"));
|
|
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const material_1 = require("@mui/material");
|
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const mui_1 = require("tss-react/mui");
|
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|
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const SanitizedHTML_1 = __importDefault(require("@jbrowse/core/ui/SanitizedHTML"));
|
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|
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const configuration_1 = require("@jbrowse/core/configuration");
|
|
12
|
-
// locals
|
|
13
12
|
const util_1 = require("../util");
|
|
14
13
|
const TrackLabelMenu_1 = __importDefault(require("./TrackLabelMenu"));
|
|
15
14
|
const useStyles = (0, mui_1.makeStyles)()(theme => ({
|
|
@@ -28,16 +27,21 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
|
|
|
28
27
|
}));
|
|
29
28
|
function TrackLabel({ data }) {
|
|
30
29
|
const { classes } = useStyles();
|
|
31
|
-
const { checked, conf, model, drawerPosition, id, trackId, name,
|
|
30
|
+
const { checked, conf, model, drawerPosition, id, trackId, name, selected, onChange, } = data;
|
|
32
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|
const description = (0, configuration_1.readConfObject)(conf, 'description');
|
|
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|
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return (
|
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|
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|
|
32
|
+
return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: description + (selected ? ' (in selection)' : ''), placement: drawerPosition === 'left' ? 'right' : 'left', children: (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { className: classes.checkboxLabel, onClick: event => {
|
|
33
|
+
if (event.ctrlKey || event.metaKey) {
|
|
34
|
+
if (selected) {
|
|
35
|
+
model.removeFromSelection([conf]);
|
|
36
|
+
}
|
|
37
|
+
else {
|
|
38
|
+
model.addToSelection([conf]);
|
|
39
|
+
}
|
|
40
|
+
event.preventDefault();
|
|
41
|
+
}
|
|
42
|
+
}, control: (0, jsx_runtime_1.jsx)(material_1.Checkbox, { className: classes.compactCheckbox, checked: checked, onChange: () => {
|
|
43
|
+
onChange(trackId);
|
|
44
|
+
}, disabled: (0, util_1.isUnsupported)(name), inputProps: {
|
|
45
|
+
'data-testid': `htsTrackEntry-${id}`,
|
|
46
|
+
} }), label: (0, jsx_runtime_1.jsx)("div", { "data-testid": `htsTrackLabel-${id}`, className: selected ? classes.selected : undefined, children: (0, jsx_runtime_1.jsx)(SanitizedHTML_1.default, { html: name }) }) }) }), (0, jsx_runtime_1.jsx)(TrackLabelMenu_1.default, { model: model, trackId: trackId, id: id, conf: conf })] }));
|
|
43
47
|
}
|
|
@@ -1,6 +1,5 @@
|
|
|
1
|
-
import
|
|
2
|
-
import { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
3
|
-
import { HierarchicalTrackSelectorModel } from '../../model';
|
|
1
|
+
import type { HierarchicalTrackSelectorModel } from '../../model';
|
|
2
|
+
import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
4
3
|
declare const TrackLabelMenu: ({ id, trackId, stopPropagation, model, setOpen, conf, }: {
|
|
5
4
|
id: string;
|
|
6
5
|
trackId: string;
|
|
@@ -8,5 +7,5 @@ declare const TrackLabelMenu: ({ id, trackId, stopPropagation, model, setOpen, c
|
|
|
8
7
|
conf: AnyConfigurationModel;
|
|
9
8
|
setOpen?: (arg: boolean) => void;
|
|
10
9
|
model: HierarchicalTrackSelectorModel;
|
|
11
|
-
}) =>
|
|
10
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
12
11
|
export default TrackLabelMenu;
|
|
@@ -3,14 +3,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
const
|
|
7
|
-
const mui_1 = require("tss-react/mui");
|
|
8
|
-
const util_1 = require("@jbrowse/core/util");
|
|
6
|
+
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
9
7
|
const CascadingMenuButton_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenuButton"));
|
|
10
|
-
|
|
8
|
+
const util_1 = require("@jbrowse/core/util");
|
|
11
9
|
const MoreHoriz_1 = __importDefault(require("@mui/icons-material/MoreHoriz"));
|
|
12
|
-
const StarBorderOutlined_1 = __importDefault(require("@mui/icons-material/StarBorderOutlined"));
|
|
13
10
|
const Star_1 = __importDefault(require("@mui/icons-material/Star"));
|
|
11
|
+
const StarBorderOutlined_1 = __importDefault(require("@mui/icons-material/StarBorderOutlined"));
|
|
12
|
+
const mui_1 = require("tss-react/mui");
|
|
14
13
|
const useStyles = (0, mui_1.makeStyles)()({
|
|
15
14
|
cascadingStyle: {
|
|
16
15
|
padding: 0,
|
|
@@ -19,7 +18,7 @@ const useStyles = (0, mui_1.makeStyles)()({
|
|
|
19
18
|
const TrackLabelMenu = function ({ id, trackId, stopPropagation, model, setOpen, conf, }) {
|
|
20
19
|
var _a, _b;
|
|
21
20
|
const { classes } = useStyles();
|
|
22
|
-
return (
|
|
21
|
+
return ((0, jsx_runtime_1.jsx)(CascadingMenuButton_1.default, { className: classes.cascadingStyle, stopPropagation: stopPropagation, setOpen: setOpen, "data-testid": `htsTrackEntryMenu-${id}`, menuItems: [
|
|
23
22
|
...(((_b = (_a = (0, util_1.getSession)(model)).getTrackActionMenuItems) === null || _b === void 0 ? void 0 : _b.call(_a, conf)) || []),
|
|
24
23
|
model.isFavorite(trackId)
|
|
25
24
|
? {
|
|
@@ -52,7 +51,6 @@ const TrackLabelMenu = function ({ id, trackId, stopPropagation, model, setOpen,
|
|
|
52
51
|
},
|
|
53
52
|
]
|
|
54
53
|
: []),
|
|
55
|
-
] }
|
|
56
|
-
react_1.default.createElement(MoreHoriz_1.default, null)));
|
|
54
|
+
], children: (0, jsx_runtime_1.jsx)(MoreHoriz_1.default, {}) }));
|
|
57
55
|
};
|
|
58
56
|
exports.default = TrackLabelMenu;
|
|
@@ -1,5 +1,4 @@
|
|
|
1
|
-
import
|
|
2
|
-
import { NodeData } from '../util';
|
|
1
|
+
import type { NodeData } from '../util';
|
|
3
2
|
export default function Node({ data, isOpen, style, setOpen, }: {
|
|
4
3
|
data: NodeData;
|
|
5
4
|
isOpen: boolean;
|
|
@@ -7,4 +6,4 @@ export default function Node({ data, isOpen, style, setOpen, }: {
|
|
|
7
6
|
height: number;
|
|
8
7
|
};
|
|
9
8
|
setOpen: (arg: boolean) => void;
|
|
10
|
-
}):
|
|
9
|
+
}): import("react/jsx-runtime").JSX.Element;
|
|
@@ -4,15 +4,11 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
6
|
exports.default = Node;
|
|
7
|
-
const
|
|
7
|
+
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
8
8
|
const mui_1 = require("tss-react/mui");
|
|
9
|
-
// locals
|
|
10
9
|
const TrackCategory_1 = __importDefault(require("./TrackCategory"));
|
|
11
10
|
const TrackLabel_1 = __importDefault(require("./TrackLabel"));
|
|
12
11
|
const useStyles = (0, mui_1.makeStyles)()(theme => ({
|
|
13
|
-
// this accordionBase element's small padding is used to give a margin to
|
|
14
|
-
// accordionColor it a "margin" because the virtualized elements can't really
|
|
15
|
-
// use margin in a conventional way (it doesn't affect layout)
|
|
16
12
|
accordionBase: {
|
|
17
13
|
display: 'flex',
|
|
18
14
|
},
|
|
@@ -25,8 +21,6 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
|
|
|
25
21
|
position: 'absolute',
|
|
26
22
|
borderLeft: '1.5px solid #555',
|
|
27
23
|
},
|
|
28
|
-
// accordionColor set's display:flex so that the child accordionText use
|
|
29
|
-
// vertically centered text
|
|
30
24
|
accordionColor: {
|
|
31
25
|
background: theme.palette.tertiary.main,
|
|
32
26
|
color: theme.palette.tertiary.contrastText,
|
|
@@ -35,21 +29,14 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
|
|
|
35
29
|
paddingLeft: 5,
|
|
36
30
|
},
|
|
37
31
|
}));
|
|
38
|
-
// An individual node in the track selector. Note: manually sets cursor:
|
|
39
|
-
// pointer improves usability for what can be clicked
|
|
40
32
|
function Node({ data, isOpen, style, setOpen, }) {
|
|
41
33
|
const { isLeaf, nestingLevel } = data;
|
|
42
34
|
const { classes } = useStyles();
|
|
43
35
|
const width = 10;
|
|
44
36
|
const marginLeft = nestingLevel * width + (isLeaf ? width : 0);
|
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45
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-
return (
|
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46
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-
|
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47
|
-
|
|
48
|
-
|
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49
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-
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50
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marginLeft,
|
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51
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whiteSpace: 'nowrap',
|
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52
|
-
width: '100%',
|
|
53
|
-
} },
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54
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-
react_1.default.createElement("div", { className: !isLeaf ? classes.accordionColor : undefined }, !isLeaf ? (react_1.default.createElement(TrackCategory_1.default, { isOpen: isOpen, data: data, setOpen: setOpen })) : (react_1.default.createElement(TrackLabel_1.default, { data: data }))))));
|
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37
|
+
return ((0, jsx_runtime_1.jsxs)("div", { style: style, className: !isLeaf ? classes.accordionBase : undefined, children: [new Array(nestingLevel).fill(0).map((_, idx) => ((0, jsx_runtime_1.jsx)("div", { style: { left: idx * width + 4, height: style === null || style === void 0 ? void 0 : style.height }, className: classes.nestingLevelMarker }, `mark-${idx}`))), (0, jsx_runtime_1.jsx)("div", { className: !isLeaf ? classes.accordionCard : undefined, style: {
|
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38
|
+
marginLeft,
|
|
39
|
+
whiteSpace: 'nowrap',
|
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40
|
+
width: '100%',
|
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41
|
+
}, children: (0, jsx_runtime_1.jsx)("div", { className: !isLeaf ? classes.accordionColor : undefined, children: !isLeaf ? ((0, jsx_runtime_1.jsx)(TrackCategory_1.default, { isOpen: isOpen, data: data, setOpen: setOpen })) : ((0, jsx_runtime_1.jsx)(TrackLabel_1.default, { data: data })) }) })] }));
|
|
55
42
|
}
|
|
@@ -1,7 +1,7 @@
|
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1
|
-
import {
|
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2
|
-
import { HierarchicalTrackSelectorModel } from '../model';
|
|
3
|
-
import {
|
|
4
|
-
import { MenuItem } from '@jbrowse/core/ui';
|
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1
|
+
import type { TreeNode } from '../generateHierarchy';
|
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2
|
+
import type { HierarchicalTrackSelectorModel } from '../model';
|
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3
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+
import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
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4
|
+
import type { MenuItem } from '@jbrowse/core/ui';
|
|
5
5
|
export interface NodeData {
|
|
6
6
|
nestingLevel: number;
|
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7
7
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checked: boolean;
|
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@@ -4,11 +4,8 @@ exports.getAllChildren = getAllChildren;
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4
4
|
exports.treeToMap = treeToMap;
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5
5
|
exports.isUnsupported = isUnsupported;
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6
6
|
function getAllChildren(subtree) {
|
|
7
|
-
// @ts-expect-error
|
|
8
7
|
return (subtree === null || subtree === void 0 ? void 0 : subtree.type) === 'category'
|
|
9
|
-
? subtree.children
|
|
10
|
-
.map(t => (t.type === 'category' ? getAllChildren(t) : t.conf))
|
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11
|
-
.flat(Number.POSITIVE_INFINITY)
|
|
8
|
+
? subtree.children.flatMap(t => t.type === 'category' ? getAllChildren(t) : t.conf)
|
|
12
9
|
: [];
|
|
13
10
|
}
|
|
14
11
|
function treeToMap(tree, map = new Map()) {
|
|
@@ -1,65 +1,23 @@
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1
|
-
import { Instance } from 'mobx-state-tree';
|
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2
|
-
/**
|
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3
|
-
* #stateModel FacetedModel
|
|
4
|
-
*/
|
|
1
|
+
import type { Instance } from 'mobx-state-tree';
|
|
5
2
|
export declare function facetedStateTreeF(): import("mobx-state-tree").IModelType<{
|
|
6
|
-
/**
|
|
7
|
-
* #property
|
|
8
|
-
*/
|
|
9
3
|
filterText: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
10
|
-
/**
|
|
11
|
-
* #property
|
|
12
|
-
*/
|
|
13
4
|
showSparse: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
14
|
-
/**
|
|
15
|
-
* #property
|
|
16
|
-
*/
|
|
17
5
|
showFilters: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
18
|
-
/**
|
|
19
|
-
* #property
|
|
20
|
-
*/
|
|
21
6
|
showOptions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
22
|
-
/**
|
|
23
|
-
* #property
|
|
24
|
-
*/
|
|
25
7
|
panelWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
26
8
|
}, {
|
|
27
9
|
visible: Record<string, boolean>;
|
|
28
10
|
useShoppingCart: boolean;
|
|
29
11
|
filters: import("mobx").ObservableMap<string, string[]>;
|
|
30
12
|
} & {
|
|
31
|
-
/**
|
|
32
|
-
* #action
|
|
33
|
-
*/
|
|
34
13
|
setFilter(key: string, value: string[]): void;
|
|
35
|
-
/**
|
|
36
|
-
* #action
|
|
37
|
-
*/
|
|
38
14
|
setPanelWidth(width: number): number;
|
|
39
|
-
/**
|
|
40
|
-
* #action
|
|
41
|
-
*/
|
|
42
15
|
setUseShoppingCart(f: boolean): void;
|
|
43
|
-
/**
|
|
44
|
-
* #action
|
|
45
|
-
*/
|
|
46
16
|
setFilterText(str: string): void;
|
|
47
|
-
/**
|
|
48
|
-
* #action
|
|
49
|
-
*/
|
|
50
17
|
setShowSparse(f: boolean): void;
|
|
51
|
-
/**
|
|
52
|
-
* #action
|
|
53
|
-
*/
|
|
54
18
|
setShowOptions(f: boolean): void;
|
|
55
|
-
/**
|
|
56
|
-
* #action
|
|
57
|
-
*/
|
|
58
19
|
setShowFilters(f: boolean): void;
|
|
59
20
|
} & {
|
|
60
|
-
/**
|
|
61
|
-
* #getter
|
|
62
|
-
*/
|
|
63
21
|
readonly allTrackConfigurations: ({
|
|
64
22
|
[x: string]: any;
|
|
65
23
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
@@ -72,9 +30,6 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
|
|
|
72
30
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
73
31
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
74
32
|
} & {
|
|
75
|
-
/**
|
|
76
|
-
* #getter
|
|
77
|
-
*/
|
|
78
33
|
readonly rows: {
|
|
79
34
|
readonly id: string;
|
|
80
35
|
readonly conf: {
|
|
@@ -95,22 +50,10 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
|
|
|
95
50
|
readonly metadata: Record<string, unknown>;
|
|
96
51
|
}[];
|
|
97
52
|
} & {
|
|
98
|
-
/**
|
|
99
|
-
* #getter
|
|
100
|
-
*/
|
|
101
53
|
readonly filteredNonMetadataKeys: string[] | readonly ["category", "adapter", "description"];
|
|
102
|
-
/**
|
|
103
|
-
* #getter
|
|
104
|
-
*/
|
|
105
54
|
readonly metadataKeys: string[];
|
|
106
55
|
readonly filteredMetadataKeys: string[];
|
|
107
|
-
/**
|
|
108
|
-
* #getter
|
|
109
|
-
*/
|
|
110
56
|
readonly fields: string[];
|
|
111
|
-
/**
|
|
112
|
-
* #getter
|
|
113
|
-
*/
|
|
114
57
|
readonly filteredRows: {
|
|
115
58
|
readonly id: string;
|
|
116
59
|
readonly conf: {
|
|
@@ -131,11 +74,9 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
|
|
|
131
74
|
readonly metadata: Record<string, unknown>;
|
|
132
75
|
}[];
|
|
133
76
|
} & {
|
|
134
|
-
/**
|
|
135
|
-
* #action
|
|
136
|
-
*/
|
|
137
77
|
setVisible(args: Record<string, boolean>): void;
|
|
138
78
|
afterAttach(): void;
|
|
139
79
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
140
80
|
export type FacetedStateModel = ReturnType<typeof facetedStateTreeF>;
|
|
141
81
|
export type FacetedModel = Instance<FacetedStateModel>;
|
|
82
|
+
export type FacetedRow = FacetedModel['filteredRows'][0];
|