@jbrowse/plugin-data-management 2.17.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (285) hide show
  1. package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts +1 -2
  2. package/dist/AddConnectionWidget/components/AddConnectionWidget.js +31 -62
  3. package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts +4 -5
  4. package/dist/AddConnectionWidget/components/ConfigureConnection.js +5 -28
  5. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +2 -3
  6. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +6 -32
  7. package/dist/AddConnectionWidget/index.d.ts +1 -1
  8. package/dist/AddConnectionWidget/index.js +18 -8
  9. package/dist/AddConnectionWidget/model.js +1 -1
  10. package/dist/AddTrackWidget/components/AddTrackStatusMessage.d.ts +9 -0
  11. package/dist/AddTrackWidget/components/AddTrackStatusMessage.js +16 -0
  12. package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts +4 -0
  13. package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js +19 -0
  14. package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +2 -3
  15. package/dist/AddTrackWidget/components/AddTrackWidget.js +7 -35
  16. package/dist/AddTrackWidget/components/ConfirmTrack.d.ts +2 -3
  17. package/dist/AddTrackWidget/components/ConfirmTrack.js +38 -97
  18. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +2 -3
  19. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +24 -107
  20. package/dist/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -3
  21. package/dist/AddTrackWidget/components/PasteConfigWorkflow.js +31 -51
  22. package/dist/AddTrackWidget/components/TextIndexingConfig.d.ts +2 -3
  23. package/dist/AddTrackWidget/components/TextIndexingConfig.js +38 -76
  24. package/dist/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -3
  25. package/dist/AddTrackWidget/components/TrackAdapterSelector.js +13 -40
  26. package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -3
  27. package/dist/AddTrackWidget/components/TrackSourceSelect.js +4 -10
  28. package/dist/AddTrackWidget/components/TrackTypeSelector.d.ts +3 -4
  29. package/dist/AddTrackWidget/components/TrackTypeSelector.js +8 -17
  30. package/dist/AddTrackWidget/components/Unsupported.d.ts +1 -0
  31. package/dist/AddTrackWidget/components/Unsupported.js +15 -0
  32. package/dist/AddTrackWidget/components/doSubmit.d.ts +4 -0
  33. package/dist/AddTrackWidget/components/doSubmit.js +50 -0
  34. package/dist/AddTrackWidget/components/util.d.ts +2 -0
  35. package/dist/AddTrackWidget/components/util.js +15 -0
  36. package/dist/AddTrackWidget/index.d.ts +1 -1
  37. package/dist/AddTrackWidget/index.js +18 -8
  38. package/dist/AddTrackWidget/model.d.ts +16 -84
  39. package/dist/AddTrackWidget/model.js +46 -94
  40. package/dist/AssemblyManager/AssemblyAddForm.d.ts +5 -6
  41. package/dist/AssemblyManager/AssemblyAddForm.js +82 -128
  42. package/dist/AssemblyManager/AssemblyEditor.d.ts +4 -4
  43. package/dist/AssemblyManager/AssemblyEditor.js +7 -7
  44. package/dist/AssemblyManager/AssemblyManager.d.ts +5 -5
  45. package/dist/AssemblyManager/AssemblyManager.js +19 -55
  46. package/dist/AssemblyManager/AssemblyTable.d.ts +8 -12
  47. package/dist/AssemblyManager/AssemblyTable.js +42 -35
  48. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +2 -3
  49. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +22 -50
  50. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +2 -3
  51. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +7 -35
  52. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +2 -3
  53. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +21 -11
  54. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +1 -2
  55. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +8 -19
  56. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +3 -4
  57. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +9 -17
  58. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +3 -4
  59. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +14 -27
  60. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +3 -4
  61. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +10 -19
  62. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +2 -3
  63. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +21 -58
  64. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +3 -4
  65. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +22 -26
  66. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.d.ts +9 -0
  67. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.js +71 -0
  68. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +2 -3
  69. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +3 -5
  70. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +2 -3
  71. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +47 -82
  72. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +3 -4
  73. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +17 -112
  74. package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +4 -5
  75. package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +7 -32
  76. package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +2 -3
  77. package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +5 -9
  78. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +2 -3
  79. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +124 -124
  80. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +2 -3
  81. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +8 -17
  82. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +3 -4
  83. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +5 -40
  84. package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +2 -3
  85. package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +6 -10
  86. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +2 -3
  87. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +46 -78
  88. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +3 -4
  89. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +19 -15
  90. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +3 -4
  91. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +6 -8
  92. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +2 -3
  93. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +6 -19
  94. package/dist/HierarchicalTrackSelectorWidget/components/util.d.ts +4 -4
  95. package/dist/HierarchicalTrackSelectorWidget/components/util.js +1 -4
  96. package/dist/HierarchicalTrackSelectorWidget/facetedModel.d.ts +2 -61
  97. package/dist/HierarchicalTrackSelectorWidget/facetedModel.js +14 -76
  98. package/dist/HierarchicalTrackSelectorWidget/filterTracks.d.ts +1 -1
  99. package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -2
  100. package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.js +0 -13
  101. package/dist/HierarchicalTrackSelectorWidget/index.d.ts +1 -1
  102. package/dist/HierarchicalTrackSelectorWidget/index.js +20 -10
  103. package/dist/HierarchicalTrackSelectorWidget/model.d.ts +3 -177
  104. package/dist/HierarchicalTrackSelectorWidget/model.js +3 -183
  105. package/dist/HierarchicalTrackSelectorWidget/util.d.ts +2 -2
  106. package/dist/HierarchicalTrackSelectorWidget/util.js +0 -3
  107. package/dist/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +2 -3
  108. package/dist/PluginStoreWidget/components/AddCustomPluginDialog.js +19 -59
  109. package/dist/PluginStoreWidget/components/DeletePluginDialog.d.ts +1 -2
  110. package/dist/PluginStoreWidget/components/DeletePluginDialog.js +10 -23
  111. package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts +3 -4
  112. package/dist/PluginStoreWidget/components/InstalledPlugin.js +45 -37
  113. package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts +3 -4
  114. package/dist/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
  115. package/dist/PluginStoreWidget/components/PluginCard.d.ts +4 -6
  116. package/dist/PluginStoreWidget/components/PluginCard.js +25 -55
  117. package/dist/PluginStoreWidget/components/PluginStoreWidget.d.ts +2 -3
  118. package/dist/PluginStoreWidget/components/PluginStoreWidget.js +53 -61
  119. package/dist/PluginStoreWidget/components/util.d.ts +1 -1
  120. package/dist/PluginStoreWidget/components/util.js +0 -1
  121. package/dist/PluginStoreWidget/index.d.ts +1 -1
  122. package/dist/PluginStoreWidget/index.js +18 -8
  123. package/dist/PluginStoreWidget/model.d.ts +2 -8
  124. package/dist/PluginStoreWidget/model.js +1 -19
  125. package/dist/{ucsc-trackhub → UCSCTrackHub}/configSchema.d.ts +0 -6
  126. package/dist/{ucsc-trackhub → UCSCTrackHub}/configSchema.js +2 -14
  127. package/{esm/ucsc-trackhub → dist/UCSCTrackHub}/doConnect.d.ts +1 -1
  128. package/dist/{ucsc-trackhub → UCSCTrackHub}/doConnect.js +19 -15
  129. package/dist/{ucsc-trackhub → UCSCTrackHub}/index.d.ts +1 -1
  130. package/dist/{ucsc-trackhub → UCSCTrackHub}/index.js +11 -9
  131. package/dist/{ucsc-trackhub → UCSCTrackHub}/model.d.ts +1 -14
  132. package/dist/{ucsc-trackhub → UCSCTrackHub}/model.js +18 -23
  133. package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.js +0 -3
  134. package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.d.ts +54 -37
  135. package/dist/UCSCTrackHub/ucscTrackHub.js +170 -0
  136. package/dist/UCSCTrackHub/util.d.ts +22 -0
  137. package/dist/UCSCTrackHub/util.js +41 -0
  138. package/dist/index.d.ts +11 -11
  139. package/dist/index.js +21 -11
  140. package/esm/AddConnectionWidget/components/AddConnectionWidget.d.ts +1 -2
  141. package/esm/AddConnectionWidget/components/AddConnectionWidget.js +31 -39
  142. package/esm/AddConnectionWidget/components/ConfigureConnection.d.ts +4 -5
  143. package/esm/AddConnectionWidget/components/ConfigureConnection.js +5 -5
  144. package/esm/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +2 -3
  145. package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js +6 -9
  146. package/esm/AddConnectionWidget/index.d.ts +1 -1
  147. package/esm/AddConnectionWidget/index.js +1 -1
  148. package/esm/AddConnectionWidget/model.js +1 -1
  149. package/esm/AddTrackWidget/components/AddTrackStatusMessage.d.ts +9 -0
  150. package/esm/AddTrackWidget/components/AddTrackStatusMessage.js +13 -0
  151. package/esm/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts +4 -0
  152. package/esm/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js +13 -0
  153. package/esm/AddTrackWidget/components/AddTrackWidget.d.ts +2 -3
  154. package/esm/AddTrackWidget/components/AddTrackWidget.js +7 -12
  155. package/esm/AddTrackWidget/components/ConfirmTrack.d.ts +2 -3
  156. package/esm/AddTrackWidget/components/ConfirmTrack.js +39 -75
  157. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +2 -3
  158. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +25 -85
  159. package/esm/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -3
  160. package/esm/AddTrackWidget/components/PasteConfigWorkflow.js +31 -28
  161. package/esm/AddTrackWidget/components/TextIndexingConfig.d.ts +2 -3
  162. package/esm/AddTrackWidget/components/TextIndexingConfig.js +39 -54
  163. package/esm/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -3
  164. package/esm/AddTrackWidget/components/TrackAdapterSelector.js +13 -37
  165. package/esm/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -3
  166. package/esm/AddTrackWidget/components/TrackSourceSelect.js +4 -7
  167. package/esm/AddTrackWidget/components/TrackTypeSelector.d.ts +3 -4
  168. package/esm/AddTrackWidget/components/TrackTypeSelector.js +8 -14
  169. package/esm/AddTrackWidget/components/Unsupported.d.ts +1 -0
  170. package/esm/AddTrackWidget/components/Unsupported.js +12 -0
  171. package/esm/AddTrackWidget/components/doSubmit.d.ts +4 -0
  172. package/esm/AddTrackWidget/components/doSubmit.js +47 -0
  173. package/esm/AddTrackWidget/components/util.d.ts +2 -0
  174. package/esm/AddTrackWidget/components/util.js +12 -0
  175. package/esm/AddTrackWidget/index.d.ts +1 -1
  176. package/esm/AddTrackWidget/index.js +1 -1
  177. package/esm/AddTrackWidget/model.d.ts +16 -84
  178. package/esm/AddTrackWidget/model.js +43 -94
  179. package/esm/AssemblyManager/AssemblyAddForm.d.ts +5 -6
  180. package/esm/AssemblyManager/AssemblyAddForm.js +82 -102
  181. package/esm/AssemblyManager/AssemblyEditor.d.ts +4 -4
  182. package/esm/AssemblyManager/AssemblyEditor.js +7 -4
  183. package/esm/AssemblyManager/AssemblyManager.d.ts +5 -5
  184. package/esm/AssemblyManager/AssemblyManager.js +19 -32
  185. package/esm/AssemblyManager/AssemblyTable.d.ts +8 -12
  186. package/esm/AssemblyManager/AssemblyTable.js +43 -36
  187. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +2 -3
  188. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +22 -27
  189. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +2 -3
  190. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +7 -12
  191. package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +2 -3
  192. package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +21 -11
  193. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +1 -2
  194. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +8 -16
  195. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +3 -4
  196. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +9 -14
  197. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +3 -4
  198. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +14 -27
  199. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +3 -4
  200. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +10 -16
  201. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +2 -3
  202. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +21 -35
  203. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +3 -4
  204. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +22 -26
  205. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.d.ts +9 -0
  206. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.js +69 -0
  207. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +2 -3
  208. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +3 -5
  209. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +2 -3
  210. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +47 -59
  211. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +3 -4
  212. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +17 -89
  213. package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +4 -5
  214. package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +7 -9
  215. package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +2 -3
  216. package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +5 -9
  217. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +2 -3
  218. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +108 -118
  219. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +2 -3
  220. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +8 -17
  221. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +3 -4
  222. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +5 -17
  223. package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +2 -3
  224. package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +6 -10
  225. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +2 -3
  226. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +46 -55
  227. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +3 -4
  228. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +19 -15
  229. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +3 -4
  230. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +6 -8
  231. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +2 -3
  232. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +6 -19
  233. package/esm/HierarchicalTrackSelectorWidget/components/util.d.ts +4 -4
  234. package/esm/HierarchicalTrackSelectorWidget/components/util.js +1 -4
  235. package/esm/HierarchicalTrackSelectorWidget/facetedModel.d.ts +2 -61
  236. package/esm/HierarchicalTrackSelectorWidget/facetedModel.js +12 -74
  237. package/esm/HierarchicalTrackSelectorWidget/filterTracks.d.ts +1 -1
  238. package/esm/HierarchicalTrackSelectorWidget/filterTracks.js +1 -1
  239. package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -2
  240. package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.js +1 -14
  241. package/esm/HierarchicalTrackSelectorWidget/index.d.ts +1 -1
  242. package/esm/HierarchicalTrackSelectorWidget/index.js +3 -3
  243. package/esm/HierarchicalTrackSelectorWidget/model.d.ts +3 -177
  244. package/esm/HierarchicalTrackSelectorWidget/model.js +4 -184
  245. package/esm/HierarchicalTrackSelectorWidget/util.d.ts +2 -2
  246. package/esm/HierarchicalTrackSelectorWidget/util.js +1 -4
  247. package/esm/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +2 -3
  248. package/esm/PluginStoreWidget/components/AddCustomPluginDialog.js +19 -36
  249. package/esm/PluginStoreWidget/components/DeletePluginDialog.d.ts +1 -2
  250. package/esm/PluginStoreWidget/components/DeletePluginDialog.js +10 -20
  251. package/esm/PluginStoreWidget/components/InstalledPlugin.d.ts +3 -4
  252. package/esm/PluginStoreWidget/components/InstalledPlugin.js +28 -30
  253. package/esm/PluginStoreWidget/components/InstalledPluginsList.d.ts +3 -4
  254. package/esm/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
  255. package/esm/PluginStoreWidget/components/PluginCard.d.ts +4 -6
  256. package/esm/PluginStoreWidget/components/PluginCard.js +27 -34
  257. package/esm/PluginStoreWidget/components/PluginStoreWidget.d.ts +2 -3
  258. package/esm/PluginStoreWidget/components/PluginStoreWidget.js +36 -54
  259. package/esm/PluginStoreWidget/components/util.d.ts +1 -1
  260. package/esm/PluginStoreWidget/components/util.js +1 -2
  261. package/esm/PluginStoreWidget/index.d.ts +1 -1
  262. package/esm/PluginStoreWidget/index.js +1 -1
  263. package/esm/PluginStoreWidget/model.d.ts +2 -8
  264. package/esm/PluginStoreWidget/model.js +1 -19
  265. package/esm/{ucsc-trackhub → UCSCTrackHub}/configSchema.d.ts +0 -6
  266. package/esm/{ucsc-trackhub → UCSCTrackHub}/configSchema.js +2 -14
  267. package/{dist/ucsc-trackhub → esm/UCSCTrackHub}/doConnect.d.ts +1 -1
  268. package/esm/{ucsc-trackhub → UCSCTrackHub}/doConnect.js +12 -8
  269. package/esm/{ucsc-trackhub → UCSCTrackHub}/index.d.ts +1 -1
  270. package/esm/UCSCTrackHub/index.js +15 -0
  271. package/esm/{ucsc-trackhub → UCSCTrackHub}/model.d.ts +1 -14
  272. package/esm/{ucsc-trackhub → UCSCTrackHub}/model.js +1 -16
  273. package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.js +0 -3
  274. package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.d.ts +54 -37
  275. package/esm/UCSCTrackHub/ucscTrackHub.js +162 -0
  276. package/esm/UCSCTrackHub/util.d.ts +22 -0
  277. package/esm/UCSCTrackHub/util.js +33 -0
  278. package/esm/index.d.ts +11 -11
  279. package/esm/index.js +3 -3
  280. package/package.json +4 -3
  281. package/dist/ucsc-trackhub/ucscTrackHub.js +0 -208
  282. package/esm/ucsc-trackhub/index.js +0 -13
  283. package/esm/ucsc-trackhub/ucscTrackHub.js +0 -195
  284. /package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.d.ts +0 -0
  285. /package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.d.ts +0 -0
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- var desc = Object.getOwnPropertyDescriptor(m, k);
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- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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- desc = { enumerable: true, get: function() { return m[k]; } };
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- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
4
  };
28
5
  Object.defineProperty(exports, "__esModule", { value: true });
29
6
  exports.default = Category;
30
- const react_1 = __importStar(require("react"));
31
- const material_1 = require("@mui/material");
32
- const mui_1 = require("tss-react/mui");
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
+ const react_1 = require("react");
33
9
  const Menu_1 = __importDefault(require("@jbrowse/core/ui/Menu"));
34
- // icons
35
10
  const ArrowDropDown_1 = __importDefault(require("@mui/icons-material/ArrowDropDown"));
36
11
  const ArrowRight_1 = __importDefault(require("@mui/icons-material/ArrowRight"));
37
12
  const MoreHoriz_1 = __importDefault(require("@mui/icons-material/MoreHoriz"));
38
- // locals
13
+ const material_1 = require("@mui/material");
14
+ const mui_1 = require("tss-react/mui");
39
15
  const util_1 = require("../util");
40
16
  const useStyles = (0, mui_1.makeStyles)()(theme => ({
41
17
  contrastColor: {
42
18
  color: theme.palette.tertiary.contrastText,
43
19
  },
44
- // margin:auto 0 to center text vertically
45
20
  accordionText: {
46
21
  margin: 'auto 0',
47
- // width 100 so you can click anywhere on the category bar
48
22
  width: '100%',
49
23
  },
50
24
  }));
@@ -52,62 +26,56 @@ function Category({ isOpen, setOpen, data, }) {
52
26
  const { classes } = useStyles();
53
27
  const [menuEl, setMenuEl] = (0, react_1.useState)(null);
54
28
  const { menuItems = [], name, model, id, tree } = data;
55
- return (react_1.default.createElement("div", { className: classes.accordionText, onClick: () => {
29
+ return ((0, jsx_runtime_1.jsxs)("div", { className: classes.accordionText, onClick: () => {
56
30
  if (!menuEl) {
57
31
  data.toggleCollapse(id);
58
32
  setOpen(!isOpen);
59
33
  }
60
- } },
61
- react_1.default.createElement(material_1.Typography, { "data-testid": `htsCategory-${name}` },
62
- isOpen ? react_1.default.createElement(ArrowDropDown_1.default, null) : react_1.default.createElement(ArrowRight_1.default, null),
63
- name,
64
- react_1.default.createElement(material_1.IconButton, { onClick: event => {
65
- setMenuEl(event.currentTarget);
66
- event.stopPropagation();
67
- }, className: classes.contrastColor },
68
- react_1.default.createElement(MoreHoriz_1.default, null))),
69
- menuEl ? (react_1.default.createElement(Menu_1.default, { anchorEl: menuEl, menuItems: [
70
- {
71
- label: 'Add to selection',
72
- onClick: () => {
73
- const r = (0, util_1.treeToMap)(tree).get(id);
74
- model.addToSelection((0, util_1.getAllChildren)(r));
34
+ }, children: [(0, jsx_runtime_1.jsxs)(material_1.Typography, { "data-testid": `htsCategory-${name}`, children: [isOpen ? (0, jsx_runtime_1.jsx)(ArrowDropDown_1.default, {}) : (0, jsx_runtime_1.jsx)(ArrowRight_1.default, {}), name, (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: event => {
35
+ setMenuEl(event.currentTarget);
36
+ event.stopPropagation();
37
+ }, className: classes.contrastColor, children: (0, jsx_runtime_1.jsx)(MoreHoriz_1.default, {}) })] }), menuEl ? ((0, jsx_runtime_1.jsx)(Menu_1.default, { anchorEl: menuEl, menuItems: [
38
+ {
39
+ label: 'Add to selection',
40
+ onClick: () => {
41
+ const r = (0, util_1.treeToMap)(tree).get(id);
42
+ model.addToSelection((0, util_1.getAllChildren)(r));
43
+ },
75
44
  },
76
- },
77
- {
78
- label: 'Remove from selection',
79
- onClick: () => {
80
- const r = (0, util_1.treeToMap)(tree).get(id);
81
- model.removeFromSelection((0, util_1.getAllChildren)(r));
45
+ {
46
+ label: 'Remove from selection',
47
+ onClick: () => {
48
+ const r = (0, util_1.treeToMap)(tree).get(id);
49
+ model.removeFromSelection((0, util_1.getAllChildren)(r));
50
+ },
82
51
  },
83
- },
84
- {
85
- label: 'Show all tracks',
86
- onClick: () => {
87
- var _a;
88
- for (const entry of ((_a = (0, util_1.treeToMap)(tree).get(id)) === null || _a === void 0 ? void 0 : _a.children) || []) {
89
- if (entry.type === 'track') {
90
- model.view.showTrack(entry.trackId);
52
+ {
53
+ label: 'Show all tracks',
54
+ onClick: () => {
55
+ var _a;
56
+ for (const entry of ((_a = (0, util_1.treeToMap)(tree).get(id)) === null || _a === void 0 ? void 0 : _a.children) || []) {
57
+ if (entry.type === 'track') {
58
+ model.view.showTrack(entry.trackId);
59
+ }
91
60
  }
92
- }
61
+ },
93
62
  },
94
- },
95
- {
96
- label: 'Hide all tracks',
97
- onClick: () => {
98
- var _a;
99
- for (const entry of ((_a = (0, util_1.treeToMap)(tree).get(id)) === null || _a === void 0 ? void 0 : _a.children) || []) {
100
- if (entry.type === 'track') {
101
- model.view.hideTrack(entry.trackId);
63
+ {
64
+ label: 'Hide all tracks',
65
+ onClick: () => {
66
+ var _a;
67
+ for (const entry of ((_a = (0, util_1.treeToMap)(tree).get(id)) === null || _a === void 0 ? void 0 : _a.children) || []) {
68
+ if (entry.type === 'track') {
69
+ model.view.hideTrack(entry.trackId);
70
+ }
102
71
  }
103
- }
72
+ },
104
73
  },
105
- },
106
- ...menuItems,
107
- ], onMenuItemClick: (_event, callback) => {
108
- callback();
109
- setMenuEl(null);
110
- }, open: Boolean(menuEl), onClose: () => {
111
- setMenuEl(null);
112
- } })) : null));
74
+ ...menuItems,
75
+ ], onMenuItemClick: (_event, callback) => {
76
+ callback();
77
+ setMenuEl(null);
78
+ }, open: Boolean(menuEl), onClose: () => {
79
+ setMenuEl(null);
80
+ } })) : null] }));
113
81
  }
@@ -1,6 +1,5 @@
1
- import React from 'react';
2
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
- import { NodeData } from '../util';
1
+ import type { NodeData } from '../util';
2
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
4
3
  export interface InfoArgs {
5
4
  target: HTMLElement;
6
5
  id: string;
@@ -8,4 +7,4 @@ export interface InfoArgs {
8
7
  }
9
8
  export default function TrackLabel({ data }: {
10
9
  data: NodeData;
11
- }): React.JSX.Element;
10
+ }): import("react/jsx-runtime").JSX.Element;
@@ -4,12 +4,11 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
6
  exports.default = TrackLabel;
7
- const react_1 = __importDefault(require("react"));
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
+ const configuration_1 = require("@jbrowse/core/configuration");
9
+ const SanitizedHTML_1 = __importDefault(require("@jbrowse/core/ui/SanitizedHTML"));
8
10
  const material_1 = require("@mui/material");
9
11
  const mui_1 = require("tss-react/mui");
10
- const SanitizedHTML_1 = __importDefault(require("@jbrowse/core/ui/SanitizedHTML"));
11
- const configuration_1 = require("@jbrowse/core/configuration");
12
- // locals
13
12
  const util_1 = require("../util");
14
13
  const TrackLabelMenu_1 = __importDefault(require("./TrackLabelMenu"));
15
14
  const useStyles = (0, mui_1.makeStyles)()(theme => ({
@@ -28,16 +27,21 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
28
27
  }));
29
28
  function TrackLabel({ data }) {
30
29
  const { classes } = useStyles();
31
- const { checked, conf, model, drawerPosition, id, trackId, name, onChange, selected, } = data;
30
+ const { checked, conf, model, drawerPosition, id, trackId, name, selected, onChange, } = data;
32
31
  const description = (0, configuration_1.readConfObject)(conf, 'description');
33
- return (react_1.default.createElement(react_1.default.Fragment, null,
34
- react_1.default.createElement(material_1.Tooltip, { title: description + (selected ? ' (in selection)' : ''), placement: drawerPosition === 'left' ? 'right' : 'left' },
35
- react_1.default.createElement(material_1.FormControlLabel, { className: classes.checkboxLabel, control: react_1.default.createElement(material_1.Checkbox, { className: classes.compactCheckbox, checked: checked, onChange: () => {
36
- onChange(trackId);
37
- }, disabled: (0, util_1.isUnsupported)(name), inputProps: {
38
- // @ts-expect-error
39
- 'data-testid': `htsTrackEntry-${id}`,
40
- } }), label: react_1.default.createElement("div", { "data-testid": `htsTrackLabel-${id}`, style: { background: selected ? '#cccc' : undefined } },
41
- react_1.default.createElement(SanitizedHTML_1.default, { html: name })) })),
42
- react_1.default.createElement(TrackLabelMenu_1.default, { model: model, trackId: trackId, id: id, conf: conf })));
32
+ return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: description + (selected ? ' (in selection)' : ''), placement: drawerPosition === 'left' ? 'right' : 'left', children: (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { className: classes.checkboxLabel, onClick: event => {
33
+ if (event.ctrlKey || event.metaKey) {
34
+ if (selected) {
35
+ model.removeFromSelection([conf]);
36
+ }
37
+ else {
38
+ model.addToSelection([conf]);
39
+ }
40
+ event.preventDefault();
41
+ }
42
+ }, control: (0, jsx_runtime_1.jsx)(material_1.Checkbox, { className: classes.compactCheckbox, checked: checked, onChange: () => {
43
+ onChange(trackId);
44
+ }, disabled: (0, util_1.isUnsupported)(name), inputProps: {
45
+ 'data-testid': `htsTrackEntry-${id}`,
46
+ } }), label: (0, jsx_runtime_1.jsx)("div", { "data-testid": `htsTrackLabel-${id}`, className: selected ? classes.selected : undefined, children: (0, jsx_runtime_1.jsx)(SanitizedHTML_1.default, { html: name }) }) }) }), (0, jsx_runtime_1.jsx)(TrackLabelMenu_1.default, { model: model, trackId: trackId, id: id, conf: conf })] }));
43
47
  }
@@ -1,6 +1,5 @@
1
- import React from 'react';
2
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
- import { HierarchicalTrackSelectorModel } from '../../model';
1
+ import type { HierarchicalTrackSelectorModel } from '../../model';
2
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
4
3
  declare const TrackLabelMenu: ({ id, trackId, stopPropagation, model, setOpen, conf, }: {
5
4
  id: string;
6
5
  trackId: string;
@@ -8,5 +7,5 @@ declare const TrackLabelMenu: ({ id, trackId, stopPropagation, model, setOpen, c
8
7
  conf: AnyConfigurationModel;
9
8
  setOpen?: (arg: boolean) => void;
10
9
  model: HierarchicalTrackSelectorModel;
11
- }) => React.JSX.Element;
10
+ }) => import("react/jsx-runtime").JSX.Element;
12
11
  export default TrackLabelMenu;
@@ -3,14 +3,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const react_1 = __importDefault(require("react"));
7
- const mui_1 = require("tss-react/mui");
8
- const util_1 = require("@jbrowse/core/util");
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
9
7
  const CascadingMenuButton_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenuButton"));
10
- // icons
8
+ const util_1 = require("@jbrowse/core/util");
11
9
  const MoreHoriz_1 = __importDefault(require("@mui/icons-material/MoreHoriz"));
12
- const StarBorderOutlined_1 = __importDefault(require("@mui/icons-material/StarBorderOutlined"));
13
10
  const Star_1 = __importDefault(require("@mui/icons-material/Star"));
11
+ const StarBorderOutlined_1 = __importDefault(require("@mui/icons-material/StarBorderOutlined"));
12
+ const mui_1 = require("tss-react/mui");
14
13
  const useStyles = (0, mui_1.makeStyles)()({
15
14
  cascadingStyle: {
16
15
  padding: 0,
@@ -19,7 +18,7 @@ const useStyles = (0, mui_1.makeStyles)()({
19
18
  const TrackLabelMenu = function ({ id, trackId, stopPropagation, model, setOpen, conf, }) {
20
19
  var _a, _b;
21
20
  const { classes } = useStyles();
22
- return (react_1.default.createElement(CascadingMenuButton_1.default, { className: classes.cascadingStyle, stopPropagation: stopPropagation, setOpen: setOpen, "data-testid": `htsTrackEntryMenu-${id}`, menuItems: [
21
+ return ((0, jsx_runtime_1.jsx)(CascadingMenuButton_1.default, { className: classes.cascadingStyle, stopPropagation: stopPropagation, setOpen: setOpen, "data-testid": `htsTrackEntryMenu-${id}`, menuItems: [
23
22
  ...(((_b = (_a = (0, util_1.getSession)(model)).getTrackActionMenuItems) === null || _b === void 0 ? void 0 : _b.call(_a, conf)) || []),
24
23
  model.isFavorite(trackId)
25
24
  ? {
@@ -52,7 +51,6 @@ const TrackLabelMenu = function ({ id, trackId, stopPropagation, model, setOpen,
52
51
  },
53
52
  ]
54
53
  : []),
55
- ] },
56
- react_1.default.createElement(MoreHoriz_1.default, null)));
54
+ ], children: (0, jsx_runtime_1.jsx)(MoreHoriz_1.default, {}) }));
57
55
  };
58
56
  exports.default = TrackLabelMenu;
@@ -1,5 +1,4 @@
1
- import React from 'react';
2
- import { NodeData } from '../util';
1
+ import type { NodeData } from '../util';
3
2
  export default function Node({ data, isOpen, style, setOpen, }: {
4
3
  data: NodeData;
5
4
  isOpen: boolean;
@@ -7,4 +6,4 @@ export default function Node({ data, isOpen, style, setOpen, }: {
7
6
  height: number;
8
7
  };
9
8
  setOpen: (arg: boolean) => void;
10
- }): React.JSX.Element;
9
+ }): import("react/jsx-runtime").JSX.Element;
@@ -4,15 +4,11 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
6
  exports.default = Node;
7
- const react_1 = __importDefault(require("react"));
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
8
  const mui_1 = require("tss-react/mui");
9
- // locals
10
9
  const TrackCategory_1 = __importDefault(require("./TrackCategory"));
11
10
  const TrackLabel_1 = __importDefault(require("./TrackLabel"));
12
11
  const useStyles = (0, mui_1.makeStyles)()(theme => ({
13
- // this accordionBase element's small padding is used to give a margin to
14
- // accordionColor it a "margin" because the virtualized elements can't really
15
- // use margin in a conventional way (it doesn't affect layout)
16
12
  accordionBase: {
17
13
  display: 'flex',
18
14
  },
@@ -25,8 +21,6 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
25
21
  position: 'absolute',
26
22
  borderLeft: '1.5px solid #555',
27
23
  },
28
- // accordionColor set's display:flex so that the child accordionText use
29
- // vertically centered text
30
24
  accordionColor: {
31
25
  background: theme.palette.tertiary.main,
32
26
  color: theme.palette.tertiary.contrastText,
@@ -35,21 +29,14 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
35
29
  paddingLeft: 5,
36
30
  },
37
31
  }));
38
- // An individual node in the track selector. Note: manually sets cursor:
39
- // pointer improves usability for what can be clicked
40
32
  function Node({ data, isOpen, style, setOpen, }) {
41
33
  const { isLeaf, nestingLevel } = data;
42
34
  const { classes } = useStyles();
43
35
  const width = 10;
44
36
  const marginLeft = nestingLevel * width + (isLeaf ? width : 0);
45
- return (react_1.default.createElement("div", { style: style, className: !isLeaf ? classes.accordionBase : undefined },
46
- new Array(nestingLevel).fill(0).map((_, idx) => (react_1.default.createElement("div", {
47
- /* biome-ignore lint/suspicious/noArrayIndexKey: */
48
- key: `mark-${idx}`, style: { left: idx * width + 4, height: style === null || style === void 0 ? void 0 : style.height }, className: classes.nestingLevelMarker }))),
49
- react_1.default.createElement("div", { className: !isLeaf ? classes.accordionCard : undefined, style: {
50
- marginLeft,
51
- whiteSpace: 'nowrap',
52
- width: '100%',
53
- } },
54
- react_1.default.createElement("div", { className: !isLeaf ? classes.accordionColor : undefined }, !isLeaf ? (react_1.default.createElement(TrackCategory_1.default, { isOpen: isOpen, data: data, setOpen: setOpen })) : (react_1.default.createElement(TrackLabel_1.default, { data: data }))))));
37
+ return ((0, jsx_runtime_1.jsxs)("div", { style: style, className: !isLeaf ? classes.accordionBase : undefined, children: [new Array(nestingLevel).fill(0).map((_, idx) => ((0, jsx_runtime_1.jsx)("div", { style: { left: idx * width + 4, height: style === null || style === void 0 ? void 0 : style.height }, className: classes.nestingLevelMarker }, `mark-${idx}`))), (0, jsx_runtime_1.jsx)("div", { className: !isLeaf ? classes.accordionCard : undefined, style: {
38
+ marginLeft,
39
+ whiteSpace: 'nowrap',
40
+ width: '100%',
41
+ }, children: (0, jsx_runtime_1.jsx)("div", { className: !isLeaf ? classes.accordionColor : undefined, children: !isLeaf ? ((0, jsx_runtime_1.jsx)(TrackCategory_1.default, { isOpen: isOpen, data: data, setOpen: setOpen })) : ((0, jsx_runtime_1.jsx)(TrackLabel_1.default, { data: data })) }) })] }));
55
42
  }
@@ -1,7 +1,7 @@
1
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
2
- import { HierarchicalTrackSelectorModel } from '../model';
3
- import { TreeNode } from '../generateHierarchy';
4
- import { MenuItem } from '@jbrowse/core/ui';
1
+ import type { TreeNode } from '../generateHierarchy';
2
+ import type { HierarchicalTrackSelectorModel } from '../model';
3
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
4
+ import type { MenuItem } from '@jbrowse/core/ui';
5
5
  export interface NodeData {
6
6
  nestingLevel: number;
7
7
  checked: boolean;
@@ -4,11 +4,8 @@ exports.getAllChildren = getAllChildren;
4
4
  exports.treeToMap = treeToMap;
5
5
  exports.isUnsupported = isUnsupported;
6
6
  function getAllChildren(subtree) {
7
- // @ts-expect-error
8
7
  return (subtree === null || subtree === void 0 ? void 0 : subtree.type) === 'category'
9
- ? subtree.children
10
- .map(t => (t.type === 'category' ? getAllChildren(t) : t.conf))
11
- .flat(Number.POSITIVE_INFINITY)
8
+ ? subtree.children.flatMap(t => t.type === 'category' ? getAllChildren(t) : t.conf)
12
9
  : [];
13
10
  }
14
11
  function treeToMap(tree, map = new Map()) {
@@ -1,65 +1,23 @@
1
- import { Instance } from 'mobx-state-tree';
2
- /**
3
- * #stateModel FacetedModel
4
- */
1
+ import type { Instance } from 'mobx-state-tree';
5
2
  export declare function facetedStateTreeF(): import("mobx-state-tree").IModelType<{
6
- /**
7
- * #property
8
- */
9
3
  filterText: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
10
- /**
11
- * #property
12
- */
13
4
  showSparse: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
14
- /**
15
- * #property
16
- */
17
5
  showFilters: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
18
- /**
19
- * #property
20
- */
21
6
  showOptions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
22
- /**
23
- * #property
24
- */
25
7
  panelWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
26
8
  }, {
27
9
  visible: Record<string, boolean>;
28
10
  useShoppingCart: boolean;
29
11
  filters: import("mobx").ObservableMap<string, string[]>;
30
12
  } & {
31
- /**
32
- * #action
33
- */
34
13
  setFilter(key: string, value: string[]): void;
35
- /**
36
- * #action
37
- */
38
14
  setPanelWidth(width: number): number;
39
- /**
40
- * #action
41
- */
42
15
  setUseShoppingCart(f: boolean): void;
43
- /**
44
- * #action
45
- */
46
16
  setFilterText(str: string): void;
47
- /**
48
- * #action
49
- */
50
17
  setShowSparse(f: boolean): void;
51
- /**
52
- * #action
53
- */
54
18
  setShowOptions(f: boolean): void;
55
- /**
56
- * #action
57
- */
58
19
  setShowFilters(f: boolean): void;
59
20
  } & {
60
- /**
61
- * #getter
62
- */
63
21
  readonly allTrackConfigurations: ({
64
22
  [x: string]: any;
65
23
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -72,9 +30,6 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
72
30
  } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
73
31
  } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
74
32
  } & {
75
- /**
76
- * #getter
77
- */
78
33
  readonly rows: {
79
34
  readonly id: string;
80
35
  readonly conf: {
@@ -95,22 +50,10 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
95
50
  readonly metadata: Record<string, unknown>;
96
51
  }[];
97
52
  } & {
98
- /**
99
- * #getter
100
- */
101
53
  readonly filteredNonMetadataKeys: string[] | readonly ["category", "adapter", "description"];
102
- /**
103
- * #getter
104
- */
105
54
  readonly metadataKeys: string[];
106
55
  readonly filteredMetadataKeys: string[];
107
- /**
108
- * #getter
109
- */
110
56
  readonly fields: string[];
111
- /**
112
- * #getter
113
- */
114
57
  readonly filteredRows: {
115
58
  readonly id: string;
116
59
  readonly conf: {
@@ -131,11 +74,9 @@ export declare function facetedStateTreeF(): import("mobx-state-tree").IModelTyp
131
74
  readonly metadata: Record<string, unknown>;
132
75
  }[];
133
76
  } & {
134
- /**
135
- * #action
136
- */
137
77
  setVisible(args: Record<string, boolean>): void;
138
78
  afterAttach(): void;
139
79
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
140
80
  export type FacetedStateModel = ReturnType<typeof facetedStateTreeF>;
141
81
  export type FacetedModel = Instance<FacetedStateModel>;
82
+ export type FacetedRow = FacetedModel['filteredRows'][0];