@jbrowse/plugin-data-management 2.17.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (285) hide show
  1. package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts +1 -2
  2. package/dist/AddConnectionWidget/components/AddConnectionWidget.js +31 -62
  3. package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts +4 -5
  4. package/dist/AddConnectionWidget/components/ConfigureConnection.js +5 -28
  5. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +2 -3
  6. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +6 -32
  7. package/dist/AddConnectionWidget/index.d.ts +1 -1
  8. package/dist/AddConnectionWidget/index.js +18 -8
  9. package/dist/AddConnectionWidget/model.js +1 -1
  10. package/dist/AddTrackWidget/components/AddTrackStatusMessage.d.ts +9 -0
  11. package/dist/AddTrackWidget/components/AddTrackStatusMessage.js +16 -0
  12. package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts +4 -0
  13. package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js +19 -0
  14. package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +2 -3
  15. package/dist/AddTrackWidget/components/AddTrackWidget.js +7 -35
  16. package/dist/AddTrackWidget/components/ConfirmTrack.d.ts +2 -3
  17. package/dist/AddTrackWidget/components/ConfirmTrack.js +38 -97
  18. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +2 -3
  19. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +24 -107
  20. package/dist/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -3
  21. package/dist/AddTrackWidget/components/PasteConfigWorkflow.js +31 -51
  22. package/dist/AddTrackWidget/components/TextIndexingConfig.d.ts +2 -3
  23. package/dist/AddTrackWidget/components/TextIndexingConfig.js +38 -76
  24. package/dist/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -3
  25. package/dist/AddTrackWidget/components/TrackAdapterSelector.js +13 -40
  26. package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -3
  27. package/dist/AddTrackWidget/components/TrackSourceSelect.js +4 -10
  28. package/dist/AddTrackWidget/components/TrackTypeSelector.d.ts +3 -4
  29. package/dist/AddTrackWidget/components/TrackTypeSelector.js +8 -17
  30. package/dist/AddTrackWidget/components/Unsupported.d.ts +1 -0
  31. package/dist/AddTrackWidget/components/Unsupported.js +15 -0
  32. package/dist/AddTrackWidget/components/doSubmit.d.ts +4 -0
  33. package/dist/AddTrackWidget/components/doSubmit.js +50 -0
  34. package/dist/AddTrackWidget/components/util.d.ts +2 -0
  35. package/dist/AddTrackWidget/components/util.js +15 -0
  36. package/dist/AddTrackWidget/index.d.ts +1 -1
  37. package/dist/AddTrackWidget/index.js +18 -8
  38. package/dist/AddTrackWidget/model.d.ts +16 -84
  39. package/dist/AddTrackWidget/model.js +46 -94
  40. package/dist/AssemblyManager/AssemblyAddForm.d.ts +5 -6
  41. package/dist/AssemblyManager/AssemblyAddForm.js +82 -128
  42. package/dist/AssemblyManager/AssemblyEditor.d.ts +4 -4
  43. package/dist/AssemblyManager/AssemblyEditor.js +7 -7
  44. package/dist/AssemblyManager/AssemblyManager.d.ts +5 -5
  45. package/dist/AssemblyManager/AssemblyManager.js +19 -55
  46. package/dist/AssemblyManager/AssemblyTable.d.ts +8 -12
  47. package/dist/AssemblyManager/AssemblyTable.js +42 -35
  48. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +2 -3
  49. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +22 -50
  50. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +2 -3
  51. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +7 -35
  52. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +2 -3
  53. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +21 -11
  54. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +1 -2
  55. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +8 -19
  56. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +3 -4
  57. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +9 -17
  58. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +3 -4
  59. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +14 -27
  60. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +3 -4
  61. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +10 -19
  62. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +2 -3
  63. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +21 -58
  64. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +3 -4
  65. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +22 -26
  66. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.d.ts +9 -0
  67. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.js +71 -0
  68. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +2 -3
  69. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +3 -5
  70. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +2 -3
  71. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +47 -82
  72. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +3 -4
  73. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +17 -112
  74. package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +4 -5
  75. package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +7 -32
  76. package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +2 -3
  77. package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +5 -9
  78. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +2 -3
  79. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +124 -124
  80. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +2 -3
  81. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +8 -17
  82. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +3 -4
  83. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +5 -40
  84. package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +2 -3
  85. package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +6 -10
  86. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +2 -3
  87. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +46 -78
  88. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +3 -4
  89. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +19 -15
  90. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +3 -4
  91. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +6 -8
  92. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +2 -3
  93. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +6 -19
  94. package/dist/HierarchicalTrackSelectorWidget/components/util.d.ts +4 -4
  95. package/dist/HierarchicalTrackSelectorWidget/components/util.js +1 -4
  96. package/dist/HierarchicalTrackSelectorWidget/facetedModel.d.ts +2 -61
  97. package/dist/HierarchicalTrackSelectorWidget/facetedModel.js +14 -76
  98. package/dist/HierarchicalTrackSelectorWidget/filterTracks.d.ts +1 -1
  99. package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -2
  100. package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.js +0 -13
  101. package/dist/HierarchicalTrackSelectorWidget/index.d.ts +1 -1
  102. package/dist/HierarchicalTrackSelectorWidget/index.js +20 -10
  103. package/dist/HierarchicalTrackSelectorWidget/model.d.ts +3 -177
  104. package/dist/HierarchicalTrackSelectorWidget/model.js +3 -183
  105. package/dist/HierarchicalTrackSelectorWidget/util.d.ts +2 -2
  106. package/dist/HierarchicalTrackSelectorWidget/util.js +0 -3
  107. package/dist/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +2 -3
  108. package/dist/PluginStoreWidget/components/AddCustomPluginDialog.js +19 -59
  109. package/dist/PluginStoreWidget/components/DeletePluginDialog.d.ts +1 -2
  110. package/dist/PluginStoreWidget/components/DeletePluginDialog.js +10 -23
  111. package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts +3 -4
  112. package/dist/PluginStoreWidget/components/InstalledPlugin.js +45 -37
  113. package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts +3 -4
  114. package/dist/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
  115. package/dist/PluginStoreWidget/components/PluginCard.d.ts +4 -6
  116. package/dist/PluginStoreWidget/components/PluginCard.js +25 -55
  117. package/dist/PluginStoreWidget/components/PluginStoreWidget.d.ts +2 -3
  118. package/dist/PluginStoreWidget/components/PluginStoreWidget.js +53 -61
  119. package/dist/PluginStoreWidget/components/util.d.ts +1 -1
  120. package/dist/PluginStoreWidget/components/util.js +0 -1
  121. package/dist/PluginStoreWidget/index.d.ts +1 -1
  122. package/dist/PluginStoreWidget/index.js +18 -8
  123. package/dist/PluginStoreWidget/model.d.ts +2 -8
  124. package/dist/PluginStoreWidget/model.js +1 -19
  125. package/dist/{ucsc-trackhub → UCSCTrackHub}/configSchema.d.ts +0 -6
  126. package/dist/{ucsc-trackhub → UCSCTrackHub}/configSchema.js +2 -14
  127. package/{esm/ucsc-trackhub → dist/UCSCTrackHub}/doConnect.d.ts +1 -1
  128. package/dist/{ucsc-trackhub → UCSCTrackHub}/doConnect.js +19 -15
  129. package/dist/{ucsc-trackhub → UCSCTrackHub}/index.d.ts +1 -1
  130. package/dist/{ucsc-trackhub → UCSCTrackHub}/index.js +11 -9
  131. package/dist/{ucsc-trackhub → UCSCTrackHub}/model.d.ts +1 -14
  132. package/dist/{ucsc-trackhub → UCSCTrackHub}/model.js +18 -23
  133. package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.js +0 -3
  134. package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.d.ts +54 -37
  135. package/dist/UCSCTrackHub/ucscTrackHub.js +170 -0
  136. package/dist/UCSCTrackHub/util.d.ts +22 -0
  137. package/dist/UCSCTrackHub/util.js +41 -0
  138. package/dist/index.d.ts +11 -11
  139. package/dist/index.js +21 -11
  140. package/esm/AddConnectionWidget/components/AddConnectionWidget.d.ts +1 -2
  141. package/esm/AddConnectionWidget/components/AddConnectionWidget.js +31 -39
  142. package/esm/AddConnectionWidget/components/ConfigureConnection.d.ts +4 -5
  143. package/esm/AddConnectionWidget/components/ConfigureConnection.js +5 -5
  144. package/esm/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +2 -3
  145. package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js +6 -9
  146. package/esm/AddConnectionWidget/index.d.ts +1 -1
  147. package/esm/AddConnectionWidget/index.js +1 -1
  148. package/esm/AddConnectionWidget/model.js +1 -1
  149. package/esm/AddTrackWidget/components/AddTrackStatusMessage.d.ts +9 -0
  150. package/esm/AddTrackWidget/components/AddTrackStatusMessage.js +13 -0
  151. package/esm/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts +4 -0
  152. package/esm/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js +13 -0
  153. package/esm/AddTrackWidget/components/AddTrackWidget.d.ts +2 -3
  154. package/esm/AddTrackWidget/components/AddTrackWidget.js +7 -12
  155. package/esm/AddTrackWidget/components/ConfirmTrack.d.ts +2 -3
  156. package/esm/AddTrackWidget/components/ConfirmTrack.js +39 -75
  157. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +2 -3
  158. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +25 -85
  159. package/esm/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -3
  160. package/esm/AddTrackWidget/components/PasteConfigWorkflow.js +31 -28
  161. package/esm/AddTrackWidget/components/TextIndexingConfig.d.ts +2 -3
  162. package/esm/AddTrackWidget/components/TextIndexingConfig.js +39 -54
  163. package/esm/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -3
  164. package/esm/AddTrackWidget/components/TrackAdapterSelector.js +13 -37
  165. package/esm/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -3
  166. package/esm/AddTrackWidget/components/TrackSourceSelect.js +4 -7
  167. package/esm/AddTrackWidget/components/TrackTypeSelector.d.ts +3 -4
  168. package/esm/AddTrackWidget/components/TrackTypeSelector.js +8 -14
  169. package/esm/AddTrackWidget/components/Unsupported.d.ts +1 -0
  170. package/esm/AddTrackWidget/components/Unsupported.js +12 -0
  171. package/esm/AddTrackWidget/components/doSubmit.d.ts +4 -0
  172. package/esm/AddTrackWidget/components/doSubmit.js +47 -0
  173. package/esm/AddTrackWidget/components/util.d.ts +2 -0
  174. package/esm/AddTrackWidget/components/util.js +12 -0
  175. package/esm/AddTrackWidget/index.d.ts +1 -1
  176. package/esm/AddTrackWidget/index.js +1 -1
  177. package/esm/AddTrackWidget/model.d.ts +16 -84
  178. package/esm/AddTrackWidget/model.js +43 -94
  179. package/esm/AssemblyManager/AssemblyAddForm.d.ts +5 -6
  180. package/esm/AssemblyManager/AssemblyAddForm.js +82 -102
  181. package/esm/AssemblyManager/AssemblyEditor.d.ts +4 -4
  182. package/esm/AssemblyManager/AssemblyEditor.js +7 -4
  183. package/esm/AssemblyManager/AssemblyManager.d.ts +5 -5
  184. package/esm/AssemblyManager/AssemblyManager.js +19 -32
  185. package/esm/AssemblyManager/AssemblyTable.d.ts +8 -12
  186. package/esm/AssemblyManager/AssemblyTable.js +43 -36
  187. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +2 -3
  188. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +22 -27
  189. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +2 -3
  190. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +7 -12
  191. package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +2 -3
  192. package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +21 -11
  193. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +1 -2
  194. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +8 -16
  195. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +3 -4
  196. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +9 -14
  197. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +3 -4
  198. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +14 -27
  199. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +3 -4
  200. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +10 -16
  201. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +2 -3
  202. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +21 -35
  203. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +3 -4
  204. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +22 -26
  205. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.d.ts +9 -0
  206. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.js +69 -0
  207. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +2 -3
  208. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +3 -5
  209. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +2 -3
  210. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +47 -59
  211. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +3 -4
  212. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +17 -89
  213. package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +4 -5
  214. package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +7 -9
  215. package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +2 -3
  216. package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +5 -9
  217. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +2 -3
  218. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +108 -118
  219. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +2 -3
  220. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +8 -17
  221. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +3 -4
  222. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +5 -17
  223. package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +2 -3
  224. package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +6 -10
  225. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +2 -3
  226. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +46 -55
  227. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +3 -4
  228. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +19 -15
  229. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +3 -4
  230. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +6 -8
  231. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +2 -3
  232. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +6 -19
  233. package/esm/HierarchicalTrackSelectorWidget/components/util.d.ts +4 -4
  234. package/esm/HierarchicalTrackSelectorWidget/components/util.js +1 -4
  235. package/esm/HierarchicalTrackSelectorWidget/facetedModel.d.ts +2 -61
  236. package/esm/HierarchicalTrackSelectorWidget/facetedModel.js +12 -74
  237. package/esm/HierarchicalTrackSelectorWidget/filterTracks.d.ts +1 -1
  238. package/esm/HierarchicalTrackSelectorWidget/filterTracks.js +1 -1
  239. package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -2
  240. package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.js +1 -14
  241. package/esm/HierarchicalTrackSelectorWidget/index.d.ts +1 -1
  242. package/esm/HierarchicalTrackSelectorWidget/index.js +3 -3
  243. package/esm/HierarchicalTrackSelectorWidget/model.d.ts +3 -177
  244. package/esm/HierarchicalTrackSelectorWidget/model.js +4 -184
  245. package/esm/HierarchicalTrackSelectorWidget/util.d.ts +2 -2
  246. package/esm/HierarchicalTrackSelectorWidget/util.js +1 -4
  247. package/esm/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +2 -3
  248. package/esm/PluginStoreWidget/components/AddCustomPluginDialog.js +19 -36
  249. package/esm/PluginStoreWidget/components/DeletePluginDialog.d.ts +1 -2
  250. package/esm/PluginStoreWidget/components/DeletePluginDialog.js +10 -20
  251. package/esm/PluginStoreWidget/components/InstalledPlugin.d.ts +3 -4
  252. package/esm/PluginStoreWidget/components/InstalledPlugin.js +28 -30
  253. package/esm/PluginStoreWidget/components/InstalledPluginsList.d.ts +3 -4
  254. package/esm/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
  255. package/esm/PluginStoreWidget/components/PluginCard.d.ts +4 -6
  256. package/esm/PluginStoreWidget/components/PluginCard.js +27 -34
  257. package/esm/PluginStoreWidget/components/PluginStoreWidget.d.ts +2 -3
  258. package/esm/PluginStoreWidget/components/PluginStoreWidget.js +36 -54
  259. package/esm/PluginStoreWidget/components/util.d.ts +1 -1
  260. package/esm/PluginStoreWidget/components/util.js +1 -2
  261. package/esm/PluginStoreWidget/index.d.ts +1 -1
  262. package/esm/PluginStoreWidget/index.js +1 -1
  263. package/esm/PluginStoreWidget/model.d.ts +2 -8
  264. package/esm/PluginStoreWidget/model.js +1 -19
  265. package/esm/{ucsc-trackhub → UCSCTrackHub}/configSchema.d.ts +0 -6
  266. package/esm/{ucsc-trackhub → UCSCTrackHub}/configSchema.js +2 -14
  267. package/{dist/ucsc-trackhub → esm/UCSCTrackHub}/doConnect.d.ts +1 -1
  268. package/esm/{ucsc-trackhub → UCSCTrackHub}/doConnect.js +12 -8
  269. package/esm/{ucsc-trackhub → UCSCTrackHub}/index.d.ts +1 -1
  270. package/esm/UCSCTrackHub/index.js +15 -0
  271. package/esm/{ucsc-trackhub → UCSCTrackHub}/model.d.ts +1 -14
  272. package/esm/{ucsc-trackhub → UCSCTrackHub}/model.js +1 -16
  273. package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.js +0 -3
  274. package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.d.ts +54 -37
  275. package/esm/UCSCTrackHub/ucscTrackHub.js +162 -0
  276. package/esm/UCSCTrackHub/util.d.ts +22 -0
  277. package/esm/UCSCTrackHub/util.js +33 -0
  278. package/esm/index.d.ts +11 -11
  279. package/esm/index.js +3 -3
  280. package/package.json +4 -3
  281. package/dist/ucsc-trackhub/ucscTrackHub.js +0 -208
  282. package/esm/ucsc-trackhub/index.js +0 -13
  283. package/esm/ucsc-trackhub/ucscTrackHub.js +0 -195
  284. /package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.d.ts +0 -0
  285. /package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.d.ts +0 -0
@@ -0,0 +1,71 @@
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+ "use strict";
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ const jsx_runtime_1 = require("react/jsx-runtime");
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+ const react_1 = require("react");
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+ const util_1 = require("@jbrowse/core/util");
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+ const x_data_grid_1 = require("@mui/x-data-grid");
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+ const mobx_1 = require("mobx");
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+ const mobx_react_1 = require("mobx-react");
9
+ const mobx_state_tree_1 = require("mobx-state-tree");
10
+ const FacetedDataGrid = (0, mobx_react_1.observer)(function ({ model, columns, shownTrackIds, selection, }) {
11
+ const { pluginManager } = (0, util_1.getEnv)(model);
12
+ const { view, faceted } = model;
13
+ const { rows, useShoppingCart, showOptions, filteredRows, filteredNonMetadataKeys, filteredMetadataKeys, visible, } = faceted;
14
+ const [widths, setWidths] = (0, react_1.useState)({
15
+ name: (0, util_1.measureGridWidth)(rows.map(r => r.name), { maxWidth: 500, stripHTML: true }) + 15,
16
+ ...Object.fromEntries(filteredNonMetadataKeys
17
+ .filter(f => visible[f])
18
+ .map(e => [
19
+ e,
20
+ (0, util_1.measureGridWidth)(rows.map(r => r[e]), { maxWidth: 400, stripHTML: true }),
21
+ ])),
22
+ ...Object.fromEntries(filteredMetadataKeys
23
+ .filter(f => visible[`metadata.${f}`])
24
+ .map(e => {
25
+ return [
26
+ `metadata.${e}`,
27
+ (0, util_1.measureGridWidth)(rows.map(r => r.metadata[e]), { maxWidth: 400, stripHTML: true }),
28
+ ];
29
+ })),
30
+ });
31
+ return ((0, jsx_runtime_1.jsx)(x_data_grid_1.DataGrid, { rows: filteredRows, onColumnWidthChange: arg => {
32
+ setWidths({
33
+ ...widths,
34
+ [arg.colDef.field]: arg.width,
35
+ });
36
+ }, columnVisibilityModel: visible, onColumnVisibilityModelChange: n => {
37
+ model.faceted.setVisible(n);
38
+ }, columnHeaderHeight: 35, checkboxSelection: true, disableRowSelectionOnClick: true, keepNonExistentRowsSelected: true, onRowSelectionModelChange: userSelectedIds => {
39
+ if (!useShoppingCart) {
40
+ const a1 = shownTrackIds;
41
+ const a2 = new Set(userSelectedIds);
42
+ (0, mobx_1.transaction)(() => {
43
+ ;
44
+ [...a1].filter(x => !a2.has(x)).map(t => view.hideTrack(t));
45
+ [...a2]
46
+ .filter(x => !a1.has(x))
47
+ .map(t => {
48
+ view.showTrack(t);
49
+ model.addToRecentlyUsed(t);
50
+ });
51
+ });
52
+ }
53
+ else {
54
+ const root = (0, mobx_state_tree_1.getRoot)(model);
55
+ const schema = pluginManager.pluggableConfigSchemaType('track');
56
+ model.setSelection(userSelectedIds.map(id => (0, mobx_state_tree_1.resolveIdentifier)(schema, root, id)));
57
+ }
58
+ }, rowSelectionModel: useShoppingCart ? selection.map(s => s.trackId) : [...shownTrackIds], slots: {
59
+ toolbar: showOptions ? x_data_grid_1.GridToolbar : null,
60
+ }, slotProps: {
61
+ toolbar: {
62
+ printOptions: {
63
+ disableToolbarButton: true,
64
+ },
65
+ },
66
+ }, columns: columns.map(r => ({
67
+ ...r,
68
+ width: widths[r.field],
69
+ })), rowHeight: 25 }));
70
+ });
71
+ exports.default = FacetedDataGrid;
@@ -1,7 +1,6 @@
1
- import React from 'react';
2
- import { HierarchicalTrackSelectorModel } from '../../model';
1
+ import type { HierarchicalTrackSelectorModel } from '../../model';
3
2
  declare const FacetedTrackSelectorDialog: (props: {
4
3
  handleClose: () => void;
5
4
  model: HierarchicalTrackSelectorModel;
6
- }) => React.JSX.Element;
5
+ }) => import("react/jsx-runtime").JSX.Element;
7
6
  export default FacetedTrackSelectorDialog;
@@ -3,15 +3,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const react_1 = __importDefault(require("react"));
7
- const material_1 = require("@mui/material");
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
7
  const ui_1 = require("@jbrowse/core/ui");
8
+ const material_1 = require("@mui/material");
9
9
  const mobx_react_1 = require("mobx-react");
10
10
  const FacetedSelector_1 = __importDefault(require("./FacetedSelector"));
11
11
  const FacetedTrackSelectorDialog = (0, mobx_react_1.observer)(function (props) {
12
12
  const { handleClose } = props;
13
- return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, maxWidth: "xl", title: "Faceted track selector" },
14
- react_1.default.createElement(material_1.DialogContent, null,
15
- react_1.default.createElement(FacetedSelector_1.default, { ...props }))));
13
+ return ((0, jsx_runtime_1.jsx)(ui_1.Dialog, { open: true, onClose: handleClose, maxWidth: "xl", title: "Faceted track selector", children: (0, jsx_runtime_1.jsx)(material_1.DialogContent, { children: (0, jsx_runtime_1.jsx)(FacetedSelector_1.default, { ...props }) }) }));
16
14
  });
17
15
  exports.default = FacetedTrackSelectorDialog;
@@ -1,5 +1,4 @@
1
- import React from 'react';
2
- import { HierarchicalTrackSelectorModel } from '../../model';
1
+ import type { HierarchicalTrackSelectorModel } from '../../model';
3
2
  export default function FacetedHeader({ model, }: {
4
3
  model: HierarchicalTrackSelectorModel;
5
- }): React.JSX.Element;
4
+ }): import("react/jsx-runtime").JSX.Element;
@@ -1,102 +1,67 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
4
  };
28
5
  Object.defineProperty(exports, "__esModule", { value: true });
29
6
  exports.default = FacetedHeader;
30
- const react_1 = __importStar(require("react"));
31
- const material_1 = require("@mui/material");
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
+ const react_1 = require("react");
32
9
  const ui_1 = require("@jbrowse/core/ui");
33
- // icons
34
10
  const Clear_1 = __importDefault(require("@mui/icons-material/Clear"));
35
11
  const MoreVert_1 = __importDefault(require("@mui/icons-material/MoreVert"));
36
- // locals
12
+ const material_1 = require("@mui/material");
37
13
  const ShoppingCart_1 = __importDefault(require("../ShoppingCart"));
38
14
  function FacetedHeader({ model, }) {
39
15
  const { faceted } = model;
40
16
  const [anchorEl, setAnchorEl] = (0, react_1.useState)(null);
41
17
  const { showOptions, showFilters, showSparse, useShoppingCart } = faceted;
42
- return (react_1.default.createElement(react_1.default.Fragment, null,
43
- react_1.default.createElement(material_1.Grid, { container: true, spacing: 4, alignItems: "center" },
44
- react_1.default.createElement(material_1.Grid, { item: true },
45
- react_1.default.createElement(material_1.TextField, { label: "Search...", value: faceted.filterText, onChange: event => {
46
- faceted.setFilterText(event.target.value);
47
- }, slotProps: {
48
- input: {
49
- endAdornment: (react_1.default.createElement(material_1.InputAdornment, { position: "end" },
50
- react_1.default.createElement(material_1.IconButton, { onClick: () => {
51
- faceted.setFilterText('');
52
- } },
53
- react_1.default.createElement(Clear_1.default, null)))),
18
+ return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)(material_1.Grid, { container: true, spacing: 4, alignItems: "center", children: [(0, jsx_runtime_1.jsx)(material_1.Grid, { item: true, children: (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "Search...", value: faceted.filterText, onChange: event => {
19
+ faceted.setFilterText(event.target.value);
20
+ }, slotProps: {
21
+ input: {
22
+ endAdornment: ((0, jsx_runtime_1.jsx)(material_1.InputAdornment, { position: "end", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
23
+ faceted.setFilterText('');
24
+ }, children: (0, jsx_runtime_1.jsx)(Clear_1.default, {}) }) })),
25
+ },
26
+ } }) }), (0, jsx_runtime_1.jsx)(material_1.Grid, { item: true, children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: event => {
27
+ setAnchorEl(event.currentTarget);
28
+ }, children: (0, jsx_runtime_1.jsx)(MoreVert_1.default, {}) }) }), (0, jsx_runtime_1.jsx)(material_1.Grid, { item: true, children: (0, jsx_runtime_1.jsx)(ShoppingCart_1.default, { model: model }) })] }), (0, jsx_runtime_1.jsx)(ui_1.Menu, { anchorEl: anchorEl, open: !!anchorEl, onClose: () => {
29
+ setAnchorEl(null);
30
+ }, onMenuItemClick: (_event, callback) => {
31
+ callback();
32
+ setAnchorEl(null);
33
+ }, menuItems: [
34
+ {
35
+ label: 'Add tracks to selection instead of turning them on/off',
36
+ onClick: () => {
37
+ faceted.setUseShoppingCart(!useShoppingCart);
54
38
  },
55
- } })),
56
- react_1.default.createElement(material_1.Grid, { item: true },
57
- react_1.default.createElement(material_1.IconButton, { onClick: event => {
58
- setAnchorEl(event.currentTarget);
59
- } },
60
- react_1.default.createElement(MoreVert_1.default, null))),
61
- react_1.default.createElement(material_1.Grid, { item: true },
62
- react_1.default.createElement(ShoppingCart_1.default, { model: model }))),
63
- react_1.default.createElement(ui_1.Menu, { anchorEl: anchorEl, open: !!anchorEl, onClose: () => {
64
- setAnchorEl(null);
65
- }, onMenuItemClick: (_event, callback) => {
66
- callback();
67
- setAnchorEl(null);
68
- }, menuItems: [
69
- {
70
- label: 'Add tracks to selection instead of turning them on/off',
71
- onClick: () => {
72
- faceted.setUseShoppingCart(!useShoppingCart);
39
+ type: 'checkbox',
40
+ checked: useShoppingCart,
73
41
  },
74
- type: 'checkbox',
75
- checked: useShoppingCart,
76
- },
77
- {
78
- label: 'Show sparse metadata columns',
79
- onClick: () => {
80
- faceted.setShowSparse(!showSparse);
42
+ {
43
+ label: 'Show sparse metadata columns',
44
+ onClick: () => {
45
+ faceted.setShowSparse(!showSparse);
46
+ },
47
+ checked: showSparse,
48
+ type: 'checkbox',
81
49
  },
82
- checked: showSparse,
83
- type: 'checkbox',
84
- },
85
- {
86
- label: 'Show facet filters',
87
- onClick: () => {
88
- faceted.setShowFilters(!showFilters);
50
+ {
51
+ label: 'Show facet filters',
52
+ onClick: () => {
53
+ faceted.setShowFilters(!showFilters);
54
+ },
55
+ checked: showFilters,
56
+ type: 'checkbox',
89
57
  },
90
- checked: showFilters,
91
- type: 'checkbox',
92
- },
93
- {
94
- label: 'Show extra table options',
95
- onClick: () => {
96
- faceted.setShowOptions(!showOptions);
58
+ {
59
+ label: 'Show extra table options',
60
+ onClick: () => {
61
+ faceted.setShowOptions(!showOptions);
62
+ },
63
+ checked: showOptions,
64
+ type: 'checkbox',
97
65
  },
98
- checked: showOptions,
99
- type: 'checkbox',
100
- },
101
- ] })));
66
+ ] })] }));
102
67
  }
@@ -1,6 +1,5 @@
1
- import React from 'react';
2
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
- import { HierarchicalTrackSelectorModel } from '../../model';
1
+ import type { HierarchicalTrackSelectorModel } from '../../model';
2
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
4
3
  export interface InfoArgs {
5
4
  target: HTMLElement;
6
5
  id: string;
@@ -8,5 +7,5 @@ export interface InfoArgs {
8
7
  }
9
8
  declare const FacetedSelector: ({ model, }: {
10
9
  model: HierarchicalTrackSelectorModel;
11
- }) => React.JSX.Element;
10
+ }) => import("react/jsx-runtime").JSX.Element;
12
11
  export default FacetedSelector;
@@ -1,43 +1,16 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
4
  };
28
5
  Object.defineProperty(exports, "__esModule", { value: true });
29
- const react_1 = __importStar(require("react"));
30
- const mobx_1 = require("mobx");
31
- const mobx_react_1 = require("mobx-react");
32
- const mobx_state_tree_1 = require("mobx-state-tree");
33
- const x_data_grid_1 = require("@mui/x-data-grid");
34
- // jbrowse
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
35
7
  const ui_1 = require("@jbrowse/core/ui");
36
8
  const SanitizedHTML_1 = __importDefault(require("@jbrowse/core/ui/SanitizedHTML"));
37
- const util_1 = require("@jbrowse/core/util");
9
+ const mobx_react_1 = require("mobx-react");
38
10
  const mui_1 = require("tss-react/mui");
39
- const FacetedHeader_1 = __importDefault(require("./FacetedHeader"));
40
11
  const FacetFilters_1 = __importDefault(require("./FacetFilters"));
12
+ const FacetedDataGrid_1 = __importDefault(require("./FacetedDataGrid"));
13
+ const FacetedHeader_1 = __importDefault(require("./FacetedHeader"));
41
14
  const TrackLabelMenu_1 = __importDefault(require("../tree/TrackLabelMenu"));
42
15
  const useStyles = (0, mui_1.makeStyles)()({
43
16
  cell: {
@@ -53,28 +26,9 @@ const useStyles = (0, mui_1.makeStyles)()({
53
26
  });
54
27
  const frac = 0.75;
55
28
  const FacetedSelector = (0, mobx_react_1.observer)(function FacetedSelector({ model, }) {
56
- var _a;
57
29
  const { classes } = useStyles();
58
- const { view, selection, shownTrackIds, faceted } = model;
59
- const { rows, panelWidth, showFilters, useShoppingCart, showOptions, filteredRows, filteredNonMetadataKeys, filteredMetadataKeys, visible, } = faceted;
60
- const { pluginManager } = (0, util_1.getEnv)(model);
61
- const [widths, setWidths] = (0, react_1.useState)({
62
- name: (0, util_1.measureGridWidth)(rows.map(r => r.name), { maxWidth: 500, stripHTML: true }) + 15,
63
- ...Object.fromEntries(filteredNonMetadataKeys
64
- .filter(f => visible[f])
65
- .map(e => [
66
- e,
67
- (0, util_1.measureGridWidth)(rows.map(r => r[e]), { maxWidth: 400, stripHTML: true }),
68
- ])),
69
- ...Object.fromEntries(filteredMetadataKeys
70
- .filter(f => visible[`metadata.${f}`])
71
- .map(e => {
72
- return [
73
- `metadata.${e}`,
74
- (0, util_1.measureGridWidth)(rows.map(r => r.metadata[e]), { maxWidth: 400, stripHTML: true }),
75
- ];
76
- })),
77
- });
30
+ const { selection, shownTrackIds, faceted } = model;
31
+ const { rows, panelWidth, showFilters, filteredNonMetadataKeys, filteredMetadataKeys, } = faceted;
78
32
  const columns = [
79
33
  {
80
34
  field: 'name',
@@ -82,89 +36,40 @@ const FacetedSelector = (0, mobx_react_1.observer)(function FacetedSelector({ mo
82
36
  renderCell: params => {
83
37
  const { value, row } = params;
84
38
  const { id, conf } = row;
85
- return (react_1.default.createElement("div", { className: classes.cell },
86
- react_1.default.createElement(SanitizedHTML_1.default, { html: value }),
87
- react_1.default.createElement(TrackLabelMenu_1.default, { id: id, conf: conf, trackId: id, model: model })));
39
+ return ((0, jsx_runtime_1.jsxs)("div", { className: classes.cell, children: [(0, jsx_runtime_1.jsx)(SanitizedHTML_1.default, { html: value }), (0, jsx_runtime_1.jsx)(TrackLabelMenu_1.default, { id: id, conf: conf, trackId: id, model: model })] }));
88
40
  },
89
- width: (_a = widths.name) !== null && _a !== void 0 ? _a : 100,
90
41
  },
91
42
  ...filteredNonMetadataKeys.map(e => {
92
- var _a;
93
43
  return {
94
44
  field: e,
95
- width: (_a = widths[e]) !== null && _a !== void 0 ? _a : 100,
96
45
  renderCell: params => {
97
46
  const val = params.value;
98
- return val ? (react_1.default.createElement(SanitizedHTML_1.default, { className: classes.cell, html: val })) : ('');
47
+ return val ? ((0, jsx_runtime_1.jsx)(SanitizedHTML_1.default, { className: classes.cell, html: val })) : ('');
99
48
  },
100
49
  };
101
50
  }),
102
51
  ...filteredMetadataKeys.map(e => {
103
- var _a;
104
52
  return {
105
53
  field: `metadata.${e}`,
106
54
  headerName: ['name', ...filteredNonMetadataKeys].includes(e)
107
55
  ? `${e} (from metadata)`
108
56
  : e,
109
- width: (_a = widths[`metadata.${e}`]) !== null && _a !== void 0 ? _a : 100,
110
57
  valueGetter: (_, row) => { var _a; return `${(_a = row.metadata[e]) !== null && _a !== void 0 ? _a : ''}`; },
111
58
  renderCell: params => {
112
59
  const val = params.value;
113
- return val ? (react_1.default.createElement(SanitizedHTML_1.default, { className: classes.cell, html: val })) : ('');
60
+ return val ? ((0, jsx_runtime_1.jsx)(SanitizedHTML_1.default, { className: classes.cell, html: val })) : ('');
114
61
  },
115
62
  };
116
63
  }),
117
64
  ];
118
- return (react_1.default.createElement(react_1.default.Fragment, null,
119
- react_1.default.createElement(FacetedHeader_1.default, { model: model }),
120
- react_1.default.createElement("div", { style: {
121
- display: 'flex',
122
- overflow: 'hidden',
123
- height: window.innerHeight * frac,
124
- width: window.innerWidth * frac,
125
- } },
126
- react_1.default.createElement("div", { style: {
65
+ return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(FacetedHeader_1.default, { model: model }), (0, jsx_runtime_1.jsxs)("div", { style: {
66
+ display: 'flex',
67
+ overflow: 'hidden',
127
68
  height: window.innerHeight * frac,
128
- width: window.innerWidth * frac - (showFilters ? panelWidth : 0),
129
- } },
130
- react_1.default.createElement(x_data_grid_1.DataGrid, { rows: filteredRows, onColumnWidthChange: arg => {
131
- setWidths({ ...widths, [arg.colDef.field]: arg.width });
132
- }, columnVisibilityModel: visible, onColumnVisibilityModelChange: n => {
133
- faceted.setVisible(n);
134
- }, columnHeaderHeight: 35, checkboxSelection: true, disableRowSelectionOnClick: true, keepNonExistentRowsSelected: true, onRowSelectionModelChange: userSelectedIds => {
135
- if (!useShoppingCart) {
136
- const a1 = shownTrackIds;
137
- const a2 = new Set(userSelectedIds);
138
- // synchronize the user selection with the view
139
- // see share https://stackoverflow.com/a/33034768/2129219
140
- (0, mobx_1.transaction)(() => {
141
- ;
142
- [...a1].filter(x => !a2.has(x)).map(t => view.hideTrack(t));
143
- [...a2]
144
- .filter(x => !a1.has(x))
145
- .map(t => {
146
- view.showTrack(t);
147
- model.addToRecentlyUsed(t);
148
- });
149
- });
150
- }
151
- else {
152
- const root = (0, mobx_state_tree_1.getRoot)(model);
153
- const schema = pluginManager.pluggableConfigSchemaType('track');
154
- model.setSelection(userSelectedIds.map(id => (0, mobx_state_tree_1.resolveIdentifier)(schema, root, id)));
155
- }
156
- }, rowSelectionModel: useShoppingCart
157
- ? selection.map(s => s.trackId)
158
- : [...shownTrackIds], slots: { toolbar: showOptions ? x_data_grid_1.GridToolbar : null }, slotProps: {
159
- toolbar: {
160
- printOptions: {
161
- disableToolbarButton: true,
162
- },
163
- },
164
- }, columns: columns, rowHeight: 25 })),
165
- showFilters ? (react_1.default.createElement(react_1.default.Fragment, null,
166
- react_1.default.createElement(ui_1.ResizeHandle, { vertical: true, onDrag: dist => faceted.setPanelWidth(panelWidth - dist), className: classes.resizeHandle }),
167
- react_1.default.createElement("div", { style: { width: panelWidth, overflow: 'auto' } },
168
- react_1.default.createElement(FacetFilters_1.default, { model: model, rows: rows, columns: columns })))) : null)));
69
+ width: window.innerWidth * frac,
70
+ }, children: [(0, jsx_runtime_1.jsx)("div", { style: {
71
+ height: window.innerHeight * frac,
72
+ width: window.innerWidth * frac - (showFilters ? panelWidth : 0),
73
+ }, children: (0, jsx_runtime_1.jsx)(FacetedDataGrid_1.default, { model: model, columns: columns, shownTrackIds: shownTrackIds, selection: selection }) }), showFilters ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(ui_1.ResizeHandle, { vertical: true, onDrag: dist => faceted.setPanelWidth(panelWidth - dist), className: classes.resizeHandle }), (0, jsx_runtime_1.jsx)("div", { style: { width: panelWidth, overflow: 'auto' }, children: (0, jsx_runtime_1.jsx)(FacetFilters_1.default, { model: model, rows: rows, columns: columns }) })] })) : null] })] }));
169
74
  });
170
75
  exports.default = FacetedSelector;
@@ -1,12 +1,11 @@
1
- import React from 'react';
2
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
- import { MenuItem } from '@jbrowse/core/ui/Menu';
4
- import { HierarchicalTrackSelectorModel } from '../../model';
1
+ import type { HierarchicalTrackSelectorModel } from '../../model';
2
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
+ import type { MenuItem } from '@jbrowse/core/ui/Menu';
5
4
  declare const DropdownTrackSelector: ({ model, tracks, extraMenuItems, children, onClick, }: {
6
5
  model: HierarchicalTrackSelectorModel;
7
6
  tracks: AnyConfigurationModel[];
8
7
  extraMenuItems: MenuItem[];
9
8
  onClick?: () => void;
10
9
  children: React.ReactElement;
11
- }) => React.JSX.Element | null;
10
+ }) => import("react/jsx-runtime").JSX.Element | null;
12
11
  export default DropdownTrackSelector;
@@ -1,49 +1,24 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
4
  };
28
5
  Object.defineProperty(exports, "__esModule", { value: true });
29
- const react_1 = __importStar(require("react"));
30
- const mobx_react_1 = require("mobx-react");
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
+ const react_1 = require("react");
31
8
  const CascadingMenuButton_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenuButton"));
32
9
  const SanitizedHTML_1 = __importDefault(require("@jbrowse/core/ui/SanitizedHTML"));
33
- const tracks_1 = require("@jbrowse/core/util/tracks");
34
10
  const util_1 = require("@jbrowse/core/util");
11
+ const tracks_1 = require("@jbrowse/core/util/tracks");
12
+ const mobx_react_1 = require("mobx-react");
35
13
  const TrackLabelMenu_1 = __importDefault(require("./TrackLabelMenu"));
36
14
  const DropdownTrackSelector = (0, mobx_react_1.observer)(function ({ model, tracks, extraMenuItems, children, onClick, }) {
37
15
  const { view } = model;
38
16
  const [open, setOpen] = (0, react_1.useState)(false);
39
17
  const session = (0, util_1.getSession)(model);
40
- return view ? (react_1.default.createElement(CascadingMenuButton_1.default, { closeAfterItemClick: false, onClick: onClick, menuItems: [
18
+ return view ? ((0, jsx_runtime_1.jsx)(CascadingMenuButton_1.default, { closeAfterItemClick: false, onClick: onClick, menuItems: [
41
19
  ...tracks.map(t => ({
42
20
  type: 'checkbox',
43
- label: (react_1.default.createElement(react_1.default.Fragment, null,
44
- react_1.default.createElement(SanitizedHTML_1.default, { html: (0, tracks_1.getTrackName)(t, session) }),
45
- ' ',
46
- react_1.default.createElement(TrackLabelMenu_1.default, { id: t.trackId, trackId: t.trackId, model: model, conf: t, setOpen: setOpen, stopPropagation: true }))),
21
+ label: ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(SanitizedHTML_1.default, { html: (0, tracks_1.getTrackName)(t, session) }), ' ', (0, jsx_runtime_1.jsx)(TrackLabelMenu_1.default, { id: t.trackId, trackId: t.trackId, model: model, conf: t, setOpen: setOpen, stopPropagation: true })] })),
47
22
  checked: view.tracks.some((f) => f.configuration === t),
48
23
  onClick: () => {
49
24
  if (!open) {
@@ -54,6 +29,6 @@ const DropdownTrackSelector = (0, mobx_react_1.observer)(function ({ model, trac
54
29
  },
55
30
  })),
56
31
  ...extraMenuItems,
57
- ] }, children)) : null;
32
+ ], children: children })) : null;
58
33
  });
59
34
  exports.default = DropdownTrackSelector;
@@ -1,6 +1,5 @@
1
- import React from 'react';
2
- import { HierarchicalTrackSelectorModel } from '../../model';
1
+ import type { HierarchicalTrackSelectorModel } from '../../model';
3
2
  declare const FavoriteTracks: ({ model, }: {
4
3
  model: HierarchicalTrackSelectorModel;
5
- }) => React.JSX.Element | null;
4
+ }) => import("react/jsx-runtime").JSX.Element | null;
6
5
  export default FavoriteTracks;
@@ -3,12 +3,11 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const react_1 = __importDefault(require("react"));
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
+ const Grade_1 = __importDefault(require("@mui/icons-material/Grade"));
7
8
  const material_1 = require("@mui/material");
8
9
  const mobx_react_1 = require("mobx-react");
9
10
  const mui_1 = require("tss-react/mui");
10
- // icons
11
- const Grade_1 = __importDefault(require("@mui/icons-material/Grade"));
12
11
  const DropdownTrackSelector_1 = __importDefault(require("./DropdownTrackSelector"));
13
12
  const useStyles = (0, mui_1.makeStyles)()({
14
13
  smallBadge: {
@@ -21,7 +20,7 @@ const useStyles = (0, mui_1.makeStyles)()({
21
20
  const FavoriteTracks = (0, mobx_react_1.observer)(function ({ model, }) {
22
21
  const { classes } = useStyles();
23
22
  const { view, favoriteTracks } = model;
24
- return view ? (react_1.default.createElement(DropdownTrackSelector_1.default, { onClick: () => {
23
+ return view ? ((0, jsx_runtime_1.jsx)(DropdownTrackSelector_1.default, { onClick: () => {
25
24
  model.setFavoritesCounter(0);
26
25
  }, tracks: favoriteTracks, model: model, extraMenuItems: favoriteTracks.length
27
26
  ? [
@@ -38,12 +37,9 @@ const FavoriteTracks = (0, mobx_react_1.observer)(function ({ model, }) {
38
37
  label: 'No favorite tracks yet',
39
38
  onClick: () => { },
40
39
  },
41
- ] },
42
- react_1.default.createElement(material_1.Tooltip, { title: "Favorite tracks" },
43
- react_1.default.createElement(material_1.Badge, { classes: { badge: classes.smallBadge }, color: "secondary", anchorOrigin: {
40
+ ], children: (0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: "Favorite tracks", children: (0, jsx_runtime_1.jsx)(material_1.Badge, { classes: { badge: classes.smallBadge }, color: "secondary", anchorOrigin: {
44
41
  vertical: 'bottom',
45
42
  horizontal: 'right',
46
- }, className: classes.margin, badgeContent: model.favoritesCounter },
47
- react_1.default.createElement(Grade_1.default, null))))) : null;
43
+ }, className: classes.margin, badgeContent: model.favoritesCounter, children: (0, jsx_runtime_1.jsx)(Grade_1.default, {}) }) }) })) : null;
48
44
  });
49
45
  exports.default = FavoriteTracks;
@@ -1,6 +1,5 @@
1
- import React from 'react';
2
- import { HierarchicalTrackSelectorModel } from '../../model';
1
+ import type { HierarchicalTrackSelectorModel } from '../../model';
3
2
  declare const HamburgerMenu: ({ model, }: {
4
3
  model: HierarchicalTrackSelectorModel;
5
- }) => React.JSX.Element;
4
+ }) => import("react/jsx-runtime").JSX.Element;
6
5
  export default HamburgerMenu;