@jbrowse/plugin-data-management 2.17.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (285) hide show
  1. package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts +1 -2
  2. package/dist/AddConnectionWidget/components/AddConnectionWidget.js +31 -62
  3. package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts +4 -5
  4. package/dist/AddConnectionWidget/components/ConfigureConnection.js +5 -28
  5. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +2 -3
  6. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +6 -32
  7. package/dist/AddConnectionWidget/index.d.ts +1 -1
  8. package/dist/AddConnectionWidget/index.js +18 -8
  9. package/dist/AddConnectionWidget/model.js +1 -1
  10. package/dist/AddTrackWidget/components/AddTrackStatusMessage.d.ts +9 -0
  11. package/dist/AddTrackWidget/components/AddTrackStatusMessage.js +16 -0
  12. package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts +4 -0
  13. package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js +19 -0
  14. package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +2 -3
  15. package/dist/AddTrackWidget/components/AddTrackWidget.js +7 -35
  16. package/dist/AddTrackWidget/components/ConfirmTrack.d.ts +2 -3
  17. package/dist/AddTrackWidget/components/ConfirmTrack.js +38 -97
  18. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +2 -3
  19. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +24 -107
  20. package/dist/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -3
  21. package/dist/AddTrackWidget/components/PasteConfigWorkflow.js +31 -51
  22. package/dist/AddTrackWidget/components/TextIndexingConfig.d.ts +2 -3
  23. package/dist/AddTrackWidget/components/TextIndexingConfig.js +38 -76
  24. package/dist/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -3
  25. package/dist/AddTrackWidget/components/TrackAdapterSelector.js +13 -40
  26. package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -3
  27. package/dist/AddTrackWidget/components/TrackSourceSelect.js +4 -10
  28. package/dist/AddTrackWidget/components/TrackTypeSelector.d.ts +3 -4
  29. package/dist/AddTrackWidget/components/TrackTypeSelector.js +8 -17
  30. package/dist/AddTrackWidget/components/Unsupported.d.ts +1 -0
  31. package/dist/AddTrackWidget/components/Unsupported.js +15 -0
  32. package/dist/AddTrackWidget/components/doSubmit.d.ts +4 -0
  33. package/dist/AddTrackWidget/components/doSubmit.js +50 -0
  34. package/dist/AddTrackWidget/components/util.d.ts +2 -0
  35. package/dist/AddTrackWidget/components/util.js +15 -0
  36. package/dist/AddTrackWidget/index.d.ts +1 -1
  37. package/dist/AddTrackWidget/index.js +18 -8
  38. package/dist/AddTrackWidget/model.d.ts +16 -84
  39. package/dist/AddTrackWidget/model.js +46 -94
  40. package/dist/AssemblyManager/AssemblyAddForm.d.ts +5 -6
  41. package/dist/AssemblyManager/AssemblyAddForm.js +82 -128
  42. package/dist/AssemblyManager/AssemblyEditor.d.ts +4 -4
  43. package/dist/AssemblyManager/AssemblyEditor.js +7 -7
  44. package/dist/AssemblyManager/AssemblyManager.d.ts +5 -5
  45. package/dist/AssemblyManager/AssemblyManager.js +19 -55
  46. package/dist/AssemblyManager/AssemblyTable.d.ts +8 -12
  47. package/dist/AssemblyManager/AssemblyTable.js +42 -35
  48. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +2 -3
  49. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +22 -50
  50. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +2 -3
  51. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +7 -35
  52. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +2 -3
  53. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +21 -11
  54. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +1 -2
  55. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +8 -19
  56. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +3 -4
  57. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +9 -17
  58. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +3 -4
  59. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +14 -27
  60. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +3 -4
  61. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +10 -19
  62. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +2 -3
  63. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +21 -58
  64. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +3 -4
  65. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +22 -26
  66. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.d.ts +9 -0
  67. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.js +71 -0
  68. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +2 -3
  69. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +3 -5
  70. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +2 -3
  71. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +47 -82
  72. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +3 -4
  73. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +17 -112
  74. package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +4 -5
  75. package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +7 -32
  76. package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +2 -3
  77. package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +5 -9
  78. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +2 -3
  79. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +124 -124
  80. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +2 -3
  81. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +8 -17
  82. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +3 -4
  83. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +5 -40
  84. package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +2 -3
  85. package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +6 -10
  86. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +2 -3
  87. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +46 -78
  88. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +3 -4
  89. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +19 -15
  90. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +3 -4
  91. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +6 -8
  92. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +2 -3
  93. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +6 -19
  94. package/dist/HierarchicalTrackSelectorWidget/components/util.d.ts +4 -4
  95. package/dist/HierarchicalTrackSelectorWidget/components/util.js +1 -4
  96. package/dist/HierarchicalTrackSelectorWidget/facetedModel.d.ts +2 -61
  97. package/dist/HierarchicalTrackSelectorWidget/facetedModel.js +14 -76
  98. package/dist/HierarchicalTrackSelectorWidget/filterTracks.d.ts +1 -1
  99. package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -2
  100. package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.js +0 -13
  101. package/dist/HierarchicalTrackSelectorWidget/index.d.ts +1 -1
  102. package/dist/HierarchicalTrackSelectorWidget/index.js +20 -10
  103. package/dist/HierarchicalTrackSelectorWidget/model.d.ts +3 -177
  104. package/dist/HierarchicalTrackSelectorWidget/model.js +3 -183
  105. package/dist/HierarchicalTrackSelectorWidget/util.d.ts +2 -2
  106. package/dist/HierarchicalTrackSelectorWidget/util.js +0 -3
  107. package/dist/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +2 -3
  108. package/dist/PluginStoreWidget/components/AddCustomPluginDialog.js +19 -59
  109. package/dist/PluginStoreWidget/components/DeletePluginDialog.d.ts +1 -2
  110. package/dist/PluginStoreWidget/components/DeletePluginDialog.js +10 -23
  111. package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts +3 -4
  112. package/dist/PluginStoreWidget/components/InstalledPlugin.js +45 -37
  113. package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts +3 -4
  114. package/dist/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
  115. package/dist/PluginStoreWidget/components/PluginCard.d.ts +4 -6
  116. package/dist/PluginStoreWidget/components/PluginCard.js +25 -55
  117. package/dist/PluginStoreWidget/components/PluginStoreWidget.d.ts +2 -3
  118. package/dist/PluginStoreWidget/components/PluginStoreWidget.js +53 -61
  119. package/dist/PluginStoreWidget/components/util.d.ts +1 -1
  120. package/dist/PluginStoreWidget/components/util.js +0 -1
  121. package/dist/PluginStoreWidget/index.d.ts +1 -1
  122. package/dist/PluginStoreWidget/index.js +18 -8
  123. package/dist/PluginStoreWidget/model.d.ts +2 -8
  124. package/dist/PluginStoreWidget/model.js +1 -19
  125. package/dist/{ucsc-trackhub → UCSCTrackHub}/configSchema.d.ts +0 -6
  126. package/dist/{ucsc-trackhub → UCSCTrackHub}/configSchema.js +2 -14
  127. package/{esm/ucsc-trackhub → dist/UCSCTrackHub}/doConnect.d.ts +1 -1
  128. package/dist/{ucsc-trackhub → UCSCTrackHub}/doConnect.js +19 -15
  129. package/dist/{ucsc-trackhub → UCSCTrackHub}/index.d.ts +1 -1
  130. package/dist/{ucsc-trackhub → UCSCTrackHub}/index.js +11 -9
  131. package/dist/{ucsc-trackhub → UCSCTrackHub}/model.d.ts +1 -14
  132. package/dist/{ucsc-trackhub → UCSCTrackHub}/model.js +18 -23
  133. package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.js +0 -3
  134. package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.d.ts +54 -37
  135. package/dist/UCSCTrackHub/ucscTrackHub.js +170 -0
  136. package/dist/UCSCTrackHub/util.d.ts +22 -0
  137. package/dist/UCSCTrackHub/util.js +41 -0
  138. package/dist/index.d.ts +11 -11
  139. package/dist/index.js +21 -11
  140. package/esm/AddConnectionWidget/components/AddConnectionWidget.d.ts +1 -2
  141. package/esm/AddConnectionWidget/components/AddConnectionWidget.js +31 -39
  142. package/esm/AddConnectionWidget/components/ConfigureConnection.d.ts +4 -5
  143. package/esm/AddConnectionWidget/components/ConfigureConnection.js +5 -5
  144. package/esm/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +2 -3
  145. package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js +6 -9
  146. package/esm/AddConnectionWidget/index.d.ts +1 -1
  147. package/esm/AddConnectionWidget/index.js +1 -1
  148. package/esm/AddConnectionWidget/model.js +1 -1
  149. package/esm/AddTrackWidget/components/AddTrackStatusMessage.d.ts +9 -0
  150. package/esm/AddTrackWidget/components/AddTrackStatusMessage.js +13 -0
  151. package/esm/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts +4 -0
  152. package/esm/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js +13 -0
  153. package/esm/AddTrackWidget/components/AddTrackWidget.d.ts +2 -3
  154. package/esm/AddTrackWidget/components/AddTrackWidget.js +7 -12
  155. package/esm/AddTrackWidget/components/ConfirmTrack.d.ts +2 -3
  156. package/esm/AddTrackWidget/components/ConfirmTrack.js +39 -75
  157. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +2 -3
  158. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +25 -85
  159. package/esm/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -3
  160. package/esm/AddTrackWidget/components/PasteConfigWorkflow.js +31 -28
  161. package/esm/AddTrackWidget/components/TextIndexingConfig.d.ts +2 -3
  162. package/esm/AddTrackWidget/components/TextIndexingConfig.js +39 -54
  163. package/esm/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -3
  164. package/esm/AddTrackWidget/components/TrackAdapterSelector.js +13 -37
  165. package/esm/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -3
  166. package/esm/AddTrackWidget/components/TrackSourceSelect.js +4 -7
  167. package/esm/AddTrackWidget/components/TrackTypeSelector.d.ts +3 -4
  168. package/esm/AddTrackWidget/components/TrackTypeSelector.js +8 -14
  169. package/esm/AddTrackWidget/components/Unsupported.d.ts +1 -0
  170. package/esm/AddTrackWidget/components/Unsupported.js +12 -0
  171. package/esm/AddTrackWidget/components/doSubmit.d.ts +4 -0
  172. package/esm/AddTrackWidget/components/doSubmit.js +47 -0
  173. package/esm/AddTrackWidget/components/util.d.ts +2 -0
  174. package/esm/AddTrackWidget/components/util.js +12 -0
  175. package/esm/AddTrackWidget/index.d.ts +1 -1
  176. package/esm/AddTrackWidget/index.js +1 -1
  177. package/esm/AddTrackWidget/model.d.ts +16 -84
  178. package/esm/AddTrackWidget/model.js +43 -94
  179. package/esm/AssemblyManager/AssemblyAddForm.d.ts +5 -6
  180. package/esm/AssemblyManager/AssemblyAddForm.js +82 -102
  181. package/esm/AssemblyManager/AssemblyEditor.d.ts +4 -4
  182. package/esm/AssemblyManager/AssemblyEditor.js +7 -4
  183. package/esm/AssemblyManager/AssemblyManager.d.ts +5 -5
  184. package/esm/AssemblyManager/AssemblyManager.js +19 -32
  185. package/esm/AssemblyManager/AssemblyTable.d.ts +8 -12
  186. package/esm/AssemblyManager/AssemblyTable.js +43 -36
  187. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +2 -3
  188. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +22 -27
  189. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +2 -3
  190. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +7 -12
  191. package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +2 -3
  192. package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +21 -11
  193. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +1 -2
  194. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +8 -16
  195. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +3 -4
  196. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +9 -14
  197. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +3 -4
  198. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +14 -27
  199. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +3 -4
  200. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +10 -16
  201. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +2 -3
  202. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +21 -35
  203. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +3 -4
  204. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +22 -26
  205. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.d.ts +9 -0
  206. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.js +69 -0
  207. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +2 -3
  208. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +3 -5
  209. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +2 -3
  210. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +47 -59
  211. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +3 -4
  212. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +17 -89
  213. package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +4 -5
  214. package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +7 -9
  215. package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +2 -3
  216. package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +5 -9
  217. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +2 -3
  218. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +108 -118
  219. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +2 -3
  220. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +8 -17
  221. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +3 -4
  222. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +5 -17
  223. package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +2 -3
  224. package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +6 -10
  225. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +2 -3
  226. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +46 -55
  227. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +3 -4
  228. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +19 -15
  229. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +3 -4
  230. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +6 -8
  231. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +2 -3
  232. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +6 -19
  233. package/esm/HierarchicalTrackSelectorWidget/components/util.d.ts +4 -4
  234. package/esm/HierarchicalTrackSelectorWidget/components/util.js +1 -4
  235. package/esm/HierarchicalTrackSelectorWidget/facetedModel.d.ts +2 -61
  236. package/esm/HierarchicalTrackSelectorWidget/facetedModel.js +12 -74
  237. package/esm/HierarchicalTrackSelectorWidget/filterTracks.d.ts +1 -1
  238. package/esm/HierarchicalTrackSelectorWidget/filterTracks.js +1 -1
  239. package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -2
  240. package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.js +1 -14
  241. package/esm/HierarchicalTrackSelectorWidget/index.d.ts +1 -1
  242. package/esm/HierarchicalTrackSelectorWidget/index.js +3 -3
  243. package/esm/HierarchicalTrackSelectorWidget/model.d.ts +3 -177
  244. package/esm/HierarchicalTrackSelectorWidget/model.js +4 -184
  245. package/esm/HierarchicalTrackSelectorWidget/util.d.ts +2 -2
  246. package/esm/HierarchicalTrackSelectorWidget/util.js +1 -4
  247. package/esm/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +2 -3
  248. package/esm/PluginStoreWidget/components/AddCustomPluginDialog.js +19 -36
  249. package/esm/PluginStoreWidget/components/DeletePluginDialog.d.ts +1 -2
  250. package/esm/PluginStoreWidget/components/DeletePluginDialog.js +10 -20
  251. package/esm/PluginStoreWidget/components/InstalledPlugin.d.ts +3 -4
  252. package/esm/PluginStoreWidget/components/InstalledPlugin.js +28 -30
  253. package/esm/PluginStoreWidget/components/InstalledPluginsList.d.ts +3 -4
  254. package/esm/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
  255. package/esm/PluginStoreWidget/components/PluginCard.d.ts +4 -6
  256. package/esm/PluginStoreWidget/components/PluginCard.js +27 -34
  257. package/esm/PluginStoreWidget/components/PluginStoreWidget.d.ts +2 -3
  258. package/esm/PluginStoreWidget/components/PluginStoreWidget.js +36 -54
  259. package/esm/PluginStoreWidget/components/util.d.ts +1 -1
  260. package/esm/PluginStoreWidget/components/util.js +1 -2
  261. package/esm/PluginStoreWidget/index.d.ts +1 -1
  262. package/esm/PluginStoreWidget/index.js +1 -1
  263. package/esm/PluginStoreWidget/model.d.ts +2 -8
  264. package/esm/PluginStoreWidget/model.js +1 -19
  265. package/esm/{ucsc-trackhub → UCSCTrackHub}/configSchema.d.ts +0 -6
  266. package/esm/{ucsc-trackhub → UCSCTrackHub}/configSchema.js +2 -14
  267. package/{dist/ucsc-trackhub → esm/UCSCTrackHub}/doConnect.d.ts +1 -1
  268. package/esm/{ucsc-trackhub → UCSCTrackHub}/doConnect.js +12 -8
  269. package/esm/{ucsc-trackhub → UCSCTrackHub}/index.d.ts +1 -1
  270. package/esm/UCSCTrackHub/index.js +15 -0
  271. package/esm/{ucsc-trackhub → UCSCTrackHub}/model.d.ts +1 -14
  272. package/esm/{ucsc-trackhub → UCSCTrackHub}/model.js +1 -16
  273. package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.js +0 -3
  274. package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.d.ts +54 -37
  275. package/esm/UCSCTrackHub/ucscTrackHub.js +162 -0
  276. package/esm/UCSCTrackHub/util.d.ts +22 -0
  277. package/esm/UCSCTrackHub/util.js +33 -0
  278. package/esm/index.d.ts +11 -11
  279. package/esm/index.js +3 -3
  280. package/package.json +4 -3
  281. package/dist/ucsc-trackhub/ucscTrackHub.js +0 -208
  282. package/esm/ucsc-trackhub/index.js +0 -13
  283. package/esm/ucsc-trackhub/ucscTrackHub.js +0 -195
  284. /package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.d.ts +0 -0
  285. /package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.d.ts +0 -0
@@ -15,26 +15,36 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
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- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
25
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
37
  };
28
38
  Object.defineProperty(exports, "__esModule", { value: true });
29
- const react_1 = __importStar(require("react"));
30
- const mobx_react_1 = require("mobx-react");
31
- const material_1 = require("@mui/material");
32
- const mui_1 = require("tss-react/mui");
33
- const Close_1 = __importDefault(require("@mui/icons-material/Close"));
34
- const Lock_1 = __importDefault(require("@mui/icons-material/Lock"));
39
+ const jsx_runtime_1 = require("react/jsx-runtime");
40
+ const react_1 = require("react");
35
41
  const util_1 = require("@jbrowse/core/util");
36
42
  const types_1 = require("@jbrowse/core/util/types");
37
- // lazies
43
+ const Close_1 = __importDefault(require("@mui/icons-material/Close"));
44
+ const Lock_1 = __importDefault(require("@mui/icons-material/Lock"));
45
+ const material_1 = require("@mui/material");
46
+ const mobx_react_1 = require("mobx-react");
47
+ const mui_1 = require("tss-react/mui");
38
48
  const DeletePluginDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./DeletePluginDialog'))));
39
49
  const useStyles = (0, mui_1.makeStyles)()(() => ({
40
50
  lockedPluginTooltip: {
@@ -43,36 +53,34 @@ const useStyles = (0, mui_1.makeStyles)()(() => ({
43
53
  }));
44
54
  function LockedPlugin() {
45
55
  const { classes } = useStyles();
46
- return (react_1.default.createElement(material_1.Tooltip, { className: classes.lockedPluginTooltip, title: "This plugin was installed by an administrator, you cannot remove it." },
47
- react_1.default.createElement(Lock_1.default, null)));
56
+ return ((0, jsx_runtime_1.jsx)(material_1.Tooltip, { className: classes.lockedPluginTooltip, title: "This plugin was installed by an administrator, you cannot remove it.", children: (0, jsx_runtime_1.jsx)(Lock_1.default, {}) }));
48
57
  }
49
58
  const InstalledPlugin = (0, mobx_react_1.observer)(function ({ plugin, model, }) {
50
- const [dialogPlugin, setDialogPlugin] = (0, react_1.useState)();
51
59
  const { pluginManager } = (0, util_1.getEnv)(model);
52
60
  const session = (0, util_1.getSession)(model);
53
61
  const { jbrowse, adminMode } = session;
54
62
  const isSessionPlugin = (0, types_1.isSessionWithSessionPlugins)(session)
55
63
  ? session.sessionPlugins.some(p => { var _a; return ((_a = pluginManager.pluginMetadata[plugin.name]) === null || _a === void 0 ? void 0 : _a.url) === p.url; })
56
64
  : false;
57
- return (react_1.default.createElement(react_1.default.Fragment, null,
58
- dialogPlugin ? (react_1.default.createElement(react_1.Suspense, { fallback: null },
59
- react_1.default.createElement(DeletePluginDialog, { plugin: dialogPlugin, onClose: name => {
60
- if (name) {
61
- const pluginMetadata = pluginManager.pluginMetadata[plugin.name];
62
- if (adminMode) {
63
- jbrowse.removePlugin(pluginMetadata);
64
- }
65
- else if ((0, types_1.isSessionWithSessionPlugins)(session)) {
66
- session.removeSessionPlugin(pluginMetadata);
67
- }
68
- }
69
- setDialogPlugin(undefined);
70
- } }))) : null,
71
- react_1.default.createElement(material_1.ListItem, { key: plugin.name },
72
- adminMode || isSessionPlugin ? (react_1.default.createElement(material_1.IconButton, { "data-testid": `removePlugin-${plugin.name}`, onClick: () => {
73
- setDialogPlugin(plugin.name);
74
- } },
75
- react_1.default.createElement(Close_1.default, null))) : (react_1.default.createElement(LockedPlugin, null)),
76
- react_1.default.createElement(material_1.Typography, null, plugin.name))));
65
+ return ((0, jsx_runtime_1.jsxs)(material_1.ListItem, { children: [adminMode || isSessionPlugin ? ((0, jsx_runtime_1.jsx)(material_1.IconButton, { "data-testid": `removePlugin-${plugin.name}`, onClick: () => {
66
+ session.queueDialog(onClose => [
67
+ DeletePluginDialog,
68
+ {
69
+ plugin: plugin.name,
70
+ onClose: (name) => {
71
+ if (name) {
72
+ const pluginMetadata = pluginManager.pluginMetadata[plugin.name];
73
+ if (adminMode) {
74
+ jbrowse.removePlugin(pluginMetadata);
75
+ }
76
+ else if ((0, types_1.isSessionWithSessionPlugins)(session)) {
77
+ session.removeSessionPlugin(pluginMetadata);
78
+ }
79
+ }
80
+ onClose();
81
+ },
82
+ },
83
+ ]);
84
+ }, children: (0, jsx_runtime_1.jsx)(Close_1.default, {}) })) : ((0, jsx_runtime_1.jsx)(LockedPlugin, {})), (0, jsx_runtime_1.jsx)(material_1.Typography, { children: plugin.name })] }, plugin.name));
77
85
  });
78
86
  exports.default = InstalledPlugin;
@@ -1,8 +1,7 @@
1
- import React from 'react';
2
- import PluginManager from '@jbrowse/core/PluginManager';
3
- import { PluginStoreModel } from '../model';
1
+ import type { PluginStoreModel } from '../model';
2
+ import type PluginManager from '@jbrowse/core/PluginManager';
4
3
  declare const InstalledPluginsList: ({ pluginManager, model, }: {
5
4
  pluginManager: PluginManager;
6
5
  model: PluginStoreModel;
7
- }) => React.JSX.Element;
6
+ }) => import("react/jsx-runtime").JSX.Element;
8
7
  export default InstalledPluginsList;
@@ -3,16 +3,16 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const react_1 = __importDefault(require("react"));
7
- const mobx_react_1 = require("mobx-react");
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
7
  const material_1 = require("@mui/material");
8
+ const mobx_react_1 = require("mobx-react");
9
9
  const InstalledPlugin_1 = __importDefault(require("./InstalledPlugin"));
10
10
  const InstalledPluginsList = (0, mobx_react_1.observer)(function InstalledPluginsList({ pluginManager, model, }) {
11
11
  const { plugins } = pluginManager;
12
12
  const { filterText } = model;
13
13
  const externalPlugins = plugins.filter(p => { var _a; return !((_a = pluginManager.pluginMetadata[p.name]) === null || _a === void 0 ? void 0 : _a.isCore); });
14
- return (react_1.default.createElement(material_1.List, null, externalPlugins.length > 0 ? (externalPlugins
15
- .filter(p => p.name.toLowerCase().includes(filterText.toLowerCase()))
16
- .map(p => react_1.default.createElement(InstalledPlugin_1.default, { key: p.name, plugin: p, model: model }))) : (react_1.default.createElement(material_1.Typography, null, "No plugins currently installed"))));
14
+ return ((0, jsx_runtime_1.jsx)(material_1.List, { children: externalPlugins.length > 0 ? (externalPlugins
15
+ .filter(p => p.name.toLowerCase().includes(filterText.toLowerCase()))
16
+ .map(p => (0, jsx_runtime_1.jsx)(InstalledPlugin_1.default, { plugin: p, model: model }, p.name))) : ((0, jsx_runtime_1.jsx)(material_1.Typography, { children: "No plugins currently installed" })) }));
17
17
  });
18
18
  exports.default = InstalledPluginsList;
@@ -1,9 +1,7 @@
1
- import React from 'react';
2
- import { JBrowsePlugin } from '@jbrowse/core/util/types';
3
- import { PluginStoreModel } from '../model';
4
- declare const PluginCard: ({ plugin, model, adminMode, }: {
1
+ import type { PluginStoreModel } from '../model';
2
+ import type { JBrowsePlugin } from '@jbrowse/core/util/types';
3
+ declare const PluginCard: ({ plugin, model, }: {
5
4
  plugin: JBrowsePlugin;
6
5
  model: PluginStoreModel;
7
- adminMode: boolean;
8
- }) => React.JSX.Element;
6
+ }) => import("react/jsx-runtime").JSX.Element;
9
7
  export default PluginCard;
@@ -1,42 +1,18 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
4
  };
28
5
  Object.defineProperty(exports, "__esModule", { value: true });
29
- const react_1 = __importStar(require("react"));
30
- const mobx_react_1 = require("mobx-react");
31
- const mobx_state_tree_1 = require("mobx-state-tree");
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
+ const react_1 = require("react");
32
8
  const util_1 = require("@jbrowse/core/util");
33
9
  const types_1 = require("@jbrowse/core/util/types");
34
- const material_1 = require("@mui/material");
35
- const mui_1 = require("tss-react/mui");
36
- // icons
37
- const Person_1 = __importDefault(require("@mui/icons-material/Person"));
38
10
  const Add_1 = __importDefault(require("@mui/icons-material/Add"));
39
11
  const Check_1 = __importDefault(require("@mui/icons-material/Check"));
12
+ const Person_1 = __importDefault(require("@mui/icons-material/Person"));
13
+ const material_1 = require("@mui/material");
14
+ const mobx_react_1 = require("mobx-react");
15
+ const mui_1 = require("tss-react/mui");
40
16
  const useStyles = (0, mui_1.makeStyles)()({
41
17
  card: {
42
18
  margin: '0.5em',
@@ -52,36 +28,30 @@ const useStyles = (0, mui_1.makeStyles)()({
52
28
  display: 'flex',
53
29
  alignItems: 'center',
54
30
  },
31
+ mr: {
32
+ marginRight: '0.5em',
33
+ },
55
34
  });
56
- const PluginCard = (0, mobx_react_1.observer)(function PluginCard({ plugin, model, adminMode, }) {
35
+ const PluginCard = (0, mobx_react_1.observer)(function PluginCard({ plugin, model, }) {
57
36
  const { classes } = useStyles();
58
37
  const session = (0, util_1.getSession)(model);
59
38
  const { pluginManager } = (0, util_1.getEnv)(model);
60
39
  const { runtimePluginDefinitions } = pluginManager;
61
- // @ts-expect-error
62
- const isInstalled = runtimePluginDefinitions.some(d => d.url === plugin.url);
40
+ const isInstalled = runtimePluginDefinitions.some(d => 'url' in d && d.url === plugin.url);
63
41
  const [tempDisabled, setTempDisabled] = (0, react_1.useState)(false);
64
- const disableButton = isInstalled || tempDisabled;
65
- const rootModel = (0, mobx_state_tree_1.getParent)(model, 3);
66
- const { jbrowse } = rootModel;
67
- return (react_1.default.createElement(material_1.Card, { variant: "outlined", key: plugin.name, className: classes.card },
68
- react_1.default.createElement(material_1.CardContent, null,
69
- react_1.default.createElement(material_1.Typography, { variant: "h5" },
70
- react_1.default.createElement(material_1.Link, { href: `${plugin.location}#readme`, target: "_blank", rel: "noopener" }, plugin.name)),
71
- react_1.default.createElement("div", { className: classes.dataField },
72
- react_1.default.createElement(Person_1.default, { style: { marginRight: '0.5em' } }),
73
- react_1.default.createElement(material_1.Typography, null, plugin.authors.join(', '))),
74
- react_1.default.createElement(material_1.Typography, { className: classes.bold }, "Description:"),
75
- react_1.default.createElement(material_1.Typography, null, plugin.description)),
76
- react_1.default.createElement(material_1.CardActions, null,
77
- react_1.default.createElement(material_1.Button, { variant: "contained", disabled: disableButton, startIcon: isInstalled ? react_1.default.createElement(Check_1.default, null) : react_1.default.createElement(Add_1.default, null), onClick: () => {
78
- if (adminMode) {
79
- jbrowse.addPlugin({ name: plugin.name, url: plugin.url });
80
- }
81
- else if ((0, types_1.isSessionWithSessionPlugins)(session)) {
82
- session.addSessionPlugin(plugin);
83
- }
84
- setTempDisabled(true);
85
- } }, isInstalled ? 'Installed' : 'Install'))));
42
+ const { adminMode, jbrowse } = session;
43
+ const { name, authors, description } = plugin;
44
+ return ((0, jsx_runtime_1.jsxs)(material_1.Card, { variant: "outlined", className: classes.card, children: [(0, jsx_runtime_1.jsxs)(material_1.CardContent, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { variant: "h5", children: (0, jsx_runtime_1.jsx)(material_1.Link, { href: `${plugin.location}#readme`, target: "_blank", rel: "noopener", children: plugin.name }) }), (0, jsx_runtime_1.jsxs)("div", { className: classes.dataField, children: [(0, jsx_runtime_1.jsx)(Person_1.default, { className: classes.mr }), (0, jsx_runtime_1.jsx)(material_1.Typography, { children: authors.join(', ') })] }), (0, jsx_runtime_1.jsx)(material_1.Typography, { className: classes.bold, children: "Description:" }), (0, jsx_runtime_1.jsx)(material_1.Typography, { children: description })] }), (0, jsx_runtime_1.jsx)(material_1.CardActions, { children: (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", disabled: isInstalled || tempDisabled, startIcon: isInstalled ? (0, jsx_runtime_1.jsx)(Check_1.default, {}) : (0, jsx_runtime_1.jsx)(Add_1.default, {}), onClick: () => {
45
+ if (adminMode) {
46
+ jbrowse.addPlugin(plugin);
47
+ }
48
+ else if ((0, types_1.isSessionWithSessionPlugins)(session)) {
49
+ session.addSessionPlugin(plugin);
50
+ }
51
+ else {
52
+ session.notify('No way to install plugin');
53
+ }
54
+ setTempDisabled(true);
55
+ }, children: isInstalled ? 'Installed' : 'Install' }) })] }, name));
86
56
  });
87
57
  exports.default = PluginCard;
@@ -1,6 +1,5 @@
1
- import React from 'react';
2
- import { PluginStoreModel } from '../model';
1
+ import type { PluginStoreModel } from '../model';
3
2
  declare const PluginStoreWidget: ({ model, }: {
4
3
  model: PluginStoreModel;
5
- }) => React.JSX.Element;
4
+ }) => import("react/jsx-runtime").JSX.Element;
6
5
  export default PluginStoreWidget;
@@ -15,33 +15,41 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
15
15
  }) : function(o, v) {
16
16
  o["default"] = v;
17
17
  });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
25
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
37
  };
28
38
  Object.defineProperty(exports, "__esModule", { value: true });
29
- const react_1 = __importStar(require("react"));
30
- const material_1 = require("@mui/material");
31
- const mui_1 = require("tss-react/mui");
32
- const mobx_react_1 = require("mobx-react");
33
- const mobx_state_tree_1 = require("mobx-state-tree");
39
+ const jsx_runtime_1 = require("react/jsx-runtime");
40
+ const react_1 = require("react");
34
41
  const ui_1 = require("@jbrowse/core/ui");
35
42
  const util_1 = require("@jbrowse/core/util");
36
- // icons
37
- const ExpandMore_1 = __importDefault(require("@mui/icons-material/ExpandMore"));
38
43
  const Clear_1 = __importDefault(require("@mui/icons-material/Clear"));
44
+ const ExpandMore_1 = __importDefault(require("@mui/icons-material/ExpandMore"));
39
45
  const InfoOutlined_1 = __importDefault(require("@mui/icons-material/InfoOutlined"));
40
- // locals
46
+ const material_1 = require("@mui/material");
47
+ const mobx_react_1 = require("mobx-react");
48
+ const mobx_state_tree_1 = require("mobx-state-tree");
49
+ const mui_1 = require("tss-react/mui");
41
50
  const InstalledPluginsList_1 = __importDefault(require("./InstalledPluginsList"));
42
51
  const PluginCard_1 = __importDefault(require("./PluginCard"));
43
52
  const util_2 = require("./util");
44
- // lazies
45
53
  const AddCustomPluginDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./AddCustomPluginDialog'))));
46
54
  const useStyles = (0, mui_1.makeStyles)()(theme => ({
47
55
  expandIcon: {
@@ -58,55 +66,39 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
58
66
  margin: '1em auto',
59
67
  display: 'flex',
60
68
  },
69
+ mr: {
70
+ marginRight: '0.3em',
71
+ },
72
+ m: {
73
+ margin: '1em',
74
+ },
61
75
  }));
62
76
  const PluginStoreWidget = (0, mobx_react_1.observer)(function ({ model, }) {
63
77
  const { classes } = useStyles();
64
78
  const { plugins, error } = (0, util_2.useFetchPlugins)();
65
- const [open, setOpen] = (0, react_1.useState)(false);
66
- const { adminMode } = (0, util_1.getSession)(model);
79
+ const { filterText } = model;
80
+ const session = (0, util_1.getSession)(model);
81
+ const { adminMode } = session;
67
82
  const { pluginManager } = (0, mobx_state_tree_1.getEnv)(model);
68
- return (react_1.default.createElement("div", null,
69
- adminMode && (react_1.default.createElement(react_1.default.Fragment, null,
70
- !util_1.isElectron && (react_1.default.createElement("div", { className: classes.adminBadge },
71
- react_1.default.createElement(InfoOutlined_1.default, { style: { marginRight: '0.3em' } }),
72
- react_1.default.createElement(material_1.Typography, null,
73
- "You are using the ",
74
- react_1.default.createElement("code", null, "admin-server"),
75
- ". Any changes you make will be saved to your configuration file. You also have the ability to add custom plugins that are not in the store."))),
76
- react_1.default.createElement(material_1.Button, { className: classes.customPluginButton, variant: "contained", onClick: () => {
77
- setOpen(true);
78
- } }, "Add custom plugin"),
79
- open ? (react_1.default.createElement(react_1.Suspense, { fallback: null },
80
- react_1.default.createElement(AddCustomPluginDialog, { onClose: () => {
81
- setOpen(false);
82
- }, model: model }))) : null)),
83
- react_1.default.createElement(material_1.TextField, { label: "Filter plugins", value: model.filterText, onChange: event => {
84
- model.setFilterText(event.target.value);
85
- }, fullWidth: true, slotProps: {
86
- input: {
87
- endAdornment: (react_1.default.createElement(material_1.InputAdornment, { position: "end" },
88
- react_1.default.createElement(material_1.IconButton, { onClick: () => {
89
- model.clearFilterText();
90
- } },
91
- react_1.default.createElement(Clear_1.default, null)))),
92
- },
93
- } }),
94
- react_1.default.createElement(material_1.Accordion, { defaultExpanded: true },
95
- react_1.default.createElement(material_1.AccordionSummary, { expandIcon: react_1.default.createElement(ExpandMore_1.default, { className: classes.expandIcon }) },
96
- react_1.default.createElement(material_1.Typography, { variant: "h5" }, "Installed plugins")),
97
- react_1.default.createElement("div", { style: { margin: '1em' } },
98
- react_1.default.createElement(InstalledPluginsList_1.default, { pluginManager: pluginManager, model: model }))),
99
- react_1.default.createElement(material_1.Accordion, { defaultExpanded: true },
100
- react_1.default.createElement(material_1.AccordionSummary, { expandIcon: react_1.default.createElement(ExpandMore_1.default, { className: classes.expandIcon }) },
101
- react_1.default.createElement(material_1.Typography, { variant: "h5" }, "Available plugins")),
102
- error ? (react_1.default.createElement(material_1.Typography, { color: "error" }, `${error}`)) : plugins ? (plugins
103
- .filter(plugin => {
104
- // If plugin only has cjsUrl, don't display outside desktop
105
- return (!(util_1.isElectron && plugin.cjsUrl) &&
106
- plugin.name
107
- .toLowerCase()
108
- .includes(model.filterText.toLowerCase()));
109
- })
110
- .map(plugin => (react_1.default.createElement(PluginCard_1.default, { key: plugin.name, plugin: plugin, model: model, adminMode: !!adminMode })))) : (react_1.default.createElement(ui_1.LoadingEllipses, null)))));
83
+ return ((0, jsx_runtime_1.jsxs)("div", { children: [adminMode && ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [!util_1.isElectron && ((0, jsx_runtime_1.jsxs)("div", { className: classes.adminBadge, children: [(0, jsx_runtime_1.jsx)(InfoOutlined_1.default, { className: classes.mr }), (0, jsx_runtime_1.jsxs)(material_1.Typography, { children: ["You are using the ", (0, jsx_runtime_1.jsx)("code", { children: "admin-server" }), ". Any changes you make will be saved to your configuration file. You also have the ability to add custom plugins that are not in the store."] })] })), (0, jsx_runtime_1.jsx)(material_1.Button, { className: classes.customPluginButton, variant: "contained", onClick: () => {
84
+ session.queueDialog(onClose => [
85
+ AddCustomPluginDialog,
86
+ {
87
+ model,
88
+ onClose,
89
+ },
90
+ ]);
91
+ }, children: "Add custom plugin" })] })), (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "Filter plugins", value: filterText, onChange: event => {
92
+ model.setFilterText(event.target.value);
93
+ }, fullWidth: true, slotProps: {
94
+ input: {
95
+ endAdornment: ((0, jsx_runtime_1.jsx)(material_1.InputAdornment, { position: "end", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
96
+ model.clearFilterText();
97
+ }, children: (0, jsx_runtime_1.jsx)(Clear_1.default, {}) }) })),
98
+ },
99
+ } }), (0, jsx_runtime_1.jsxs)(material_1.Accordion, { defaultExpanded: true, children: [(0, jsx_runtime_1.jsx)(material_1.AccordionSummary, { expandIcon: (0, jsx_runtime_1.jsx)(ExpandMore_1.default, { className: classes.expandIcon }), children: (0, jsx_runtime_1.jsx)(material_1.Typography, { variant: "h5", children: "Installed plugins" }) }), (0, jsx_runtime_1.jsx)("div", { className: classes.m, children: (0, jsx_runtime_1.jsx)(InstalledPluginsList_1.default, { pluginManager: pluginManager, model: model }) })] }), (0, jsx_runtime_1.jsxs)(material_1.Accordion, { defaultExpanded: true, children: [(0, jsx_runtime_1.jsx)(material_1.AccordionSummary, { expandIcon: (0, jsx_runtime_1.jsx)(ExpandMore_1.default, { className: classes.expandIcon }), children: (0, jsx_runtime_1.jsx)(material_1.Typography, { variant: "h5", children: "Available plugins" }) }), error ? ((0, jsx_runtime_1.jsx)(material_1.Typography, { color: "error", children: `${error}` })) : plugins ? (plugins
100
+ .filter(plugin => !(util_1.isElectron && plugin.cjsUrl) &&
101
+ plugin.name.toLowerCase().includes(filterText.toLowerCase()))
102
+ .map(plugin => ((0, jsx_runtime_1.jsx)(PluginCard_1.default, { plugin: plugin, model: model }, plugin.name)))) : ((0, jsx_runtime_1.jsx)(ui_1.LoadingEllipses, {}))] })] }));
111
103
  });
112
104
  exports.default = PluginStoreWidget;
@@ -1,4 +1,4 @@
1
- import { JBrowsePlugin } from '@jbrowse/core/util/types';
1
+ import type { JBrowsePlugin } from '@jbrowse/core/util/types';
2
2
  export declare function useFetchPlugins(): {
3
3
  plugins: JBrowsePlugin[] | undefined;
4
4
  error: unknown;
@@ -6,7 +6,6 @@ function useFetchPlugins() {
6
6
  const [plugins, setPlugins] = (0, react_1.useState)();
7
7
  const [error, setError] = (0, react_1.useState)();
8
8
  (0, react_1.useEffect)(() => {
9
- // eslint-disable-next-line @typescript-eslint/no-floating-promises
10
9
  ;
11
10
  (async () => {
12
11
  try {
@@ -1,2 +1,2 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
1
+ import type PluginManager from '@jbrowse/core/PluginManager';
2
2
  export default function PluginStoreWidgetF(pluginManager: PluginManager): void;
@@ -15,21 +15,31 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
15
15
  }) : function(o, v) {
16
16
  o["default"] = v;
17
17
  });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
25
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
37
  };
28
38
  Object.defineProperty(exports, "__esModule", { value: true });
29
39
  exports.default = PluginStoreWidgetF;
40
+ const react_1 = require("react");
30
41
  const configuration_1 = require("@jbrowse/core/configuration");
31
42
  const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
32
- const react_1 = require("react");
33
43
  const model_1 = __importDefault(require("./model"));
34
44
  const configSchema = (0, configuration_1.ConfigurationSchema)('PluginStoreWidget', {});
35
45
  function PluginStoreWidgetF(pluginManager) {
@@ -1,18 +1,12 @@
1
- import { Instance } from 'mobx-state-tree';
2
- import PluginManager from '@jbrowse/core/PluginManager';
1
+ import type PluginManager from '@jbrowse/core/PluginManager';
2
+ import type { Instance } from 'mobx-state-tree';
3
3
  export default function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
4
4
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
5
  type: import("mobx-state-tree").ISimpleType<"PluginStoreWidget">;
6
6
  filterText: import("mobx-state-tree").IType<string | undefined, string, string>;
7
7
  view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
8
8
  }, {
9
- /**
10
- * #action
11
- */
12
9
  clearFilterText(): void;
13
- /**
14
- * #action
15
- */
16
10
  setFilterText(newText: string): void;
17
11
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
18
12
  export type PluginStoreStateModel = ReturnType<typeof stateModelFactory>;
@@ -1,38 +1,20 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.default = stateModelFactory;
4
- const mobx_state_tree_1 = require("mobx-state-tree");
5
4
  const mst_1 = require("@jbrowse/core/util/types/mst");
5
+ const mobx_state_tree_1 = require("mobx-state-tree");
6
6
  function stateModelFactory(pluginManager) {
7
7
  return mobx_state_tree_1.types
8
8
  .model('PluginStoreModel', {
9
- /**
10
- * #property
11
- */
12
9
  id: mst_1.ElementId,
13
- /**
14
- * #property
15
- */
16
10
  type: mobx_state_tree_1.types.literal('PluginStoreWidget'),
17
- /**
18
- * #property
19
- */
20
11
  filterText: '',
21
- /**
22
- * #property
23
- */
24
12
  view: mobx_state_tree_1.types.safeReference(pluginManager.pluggableMstType('view', 'stateModel')),
25
13
  })
26
14
  .actions(self => ({
27
- /**
28
- * #action
29
- */
30
15
  clearFilterText() {
31
16
  self.filterText = '';
32
17
  },
33
- /**
34
- * #action
35
- */
36
18
  setFilterText(newText) {
37
19
  self.filterText = newText;
38
20
  },
@@ -1,7 +1,4 @@
1
1
  declare const UCSCTrackHubConnection: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
- /**
3
- * #slot
4
- */
5
2
  hubTxtLocation: {
6
3
  type: string;
7
4
  defaultValue: {
@@ -10,9 +7,6 @@ declare const UCSCTrackHubConnection: import("@jbrowse/core/configuration/config
10
7
  };
11
8
  description: string;
12
9
  };
13
- /**
14
- * #slot
15
- */
16
10
  assemblyNames: {
17
11
  type: string;
18
12
  defaultValue: never[];
@@ -1,15 +1,9 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
- const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
4
3
  const configuration_1 = require("@jbrowse/core/configuration");
5
- /**
6
- * #config UCSCTrackHubConnection
7
- */
8
- function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
4
+ const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
5
+ function x() { }
9
6
  const UCSCTrackHubConnection = (0, configuration_1.ConfigurationSchema)('UCSCTrackHubConnection', {
10
- /**
11
- * #slot
12
- */
13
7
  hubTxtLocation: {
14
8
  type: 'fileLocation',
15
9
  defaultValue: {
@@ -18,18 +12,12 @@ const UCSCTrackHubConnection = (0, configuration_1.ConfigurationSchema)('UCSCTra
18
12
  },
19
13
  description: 'location of the hub file (usually called hub.txt)',
20
14
  },
21
- /**
22
- * #slot
23
- */
24
15
  assemblyNames: {
25
16
  type: 'stringArray',
26
17
  defaultValue: [],
27
18
  description: 'optional list of genomes to import from this track hub, if empty all genomes will be imported',
28
19
  },
29
20
  }, {
30
- /**
31
- * #baseConfiguration
32
- */
33
21
  baseConfiguration: models_1.baseConnectionConfig,
34
22
  });
35
23
  exports.default = UCSCTrackHubConnection;
@@ -1,4 +1,4 @@
1
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
1
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
2
2
  export declare function doConnect(self: {
3
3
  configuration: AnyConfigurationModel;
4
4
  addTrackConfs: (arg: Record<string, unknown>[]) => void;