@jbrowse/plugin-data-management 2.17.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (285) hide show
  1. package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts +1 -2
  2. package/dist/AddConnectionWidget/components/AddConnectionWidget.js +31 -62
  3. package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts +4 -5
  4. package/dist/AddConnectionWidget/components/ConfigureConnection.js +5 -28
  5. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +2 -3
  6. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +6 -32
  7. package/dist/AddConnectionWidget/index.d.ts +1 -1
  8. package/dist/AddConnectionWidget/index.js +18 -8
  9. package/dist/AddConnectionWidget/model.js +1 -1
  10. package/dist/AddTrackWidget/components/AddTrackStatusMessage.d.ts +9 -0
  11. package/dist/AddTrackWidget/components/AddTrackStatusMessage.js +16 -0
  12. package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts +4 -0
  13. package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js +19 -0
  14. package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +2 -3
  15. package/dist/AddTrackWidget/components/AddTrackWidget.js +7 -35
  16. package/dist/AddTrackWidget/components/ConfirmTrack.d.ts +2 -3
  17. package/dist/AddTrackWidget/components/ConfirmTrack.js +38 -97
  18. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +2 -3
  19. package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +24 -107
  20. package/dist/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -3
  21. package/dist/AddTrackWidget/components/PasteConfigWorkflow.js +31 -51
  22. package/dist/AddTrackWidget/components/TextIndexingConfig.d.ts +2 -3
  23. package/dist/AddTrackWidget/components/TextIndexingConfig.js +38 -76
  24. package/dist/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -3
  25. package/dist/AddTrackWidget/components/TrackAdapterSelector.js +13 -40
  26. package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -3
  27. package/dist/AddTrackWidget/components/TrackSourceSelect.js +4 -10
  28. package/dist/AddTrackWidget/components/TrackTypeSelector.d.ts +3 -4
  29. package/dist/AddTrackWidget/components/TrackTypeSelector.js +8 -17
  30. package/dist/AddTrackWidget/components/Unsupported.d.ts +1 -0
  31. package/dist/AddTrackWidget/components/Unsupported.js +15 -0
  32. package/dist/AddTrackWidget/components/doSubmit.d.ts +4 -0
  33. package/dist/AddTrackWidget/components/doSubmit.js +50 -0
  34. package/dist/AddTrackWidget/components/util.d.ts +2 -0
  35. package/dist/AddTrackWidget/components/util.js +15 -0
  36. package/dist/AddTrackWidget/index.d.ts +1 -1
  37. package/dist/AddTrackWidget/index.js +18 -8
  38. package/dist/AddTrackWidget/model.d.ts +16 -84
  39. package/dist/AddTrackWidget/model.js +46 -94
  40. package/dist/AssemblyManager/AssemblyAddForm.d.ts +5 -6
  41. package/dist/AssemblyManager/AssemblyAddForm.js +82 -128
  42. package/dist/AssemblyManager/AssemblyEditor.d.ts +4 -4
  43. package/dist/AssemblyManager/AssemblyEditor.js +7 -7
  44. package/dist/AssemblyManager/AssemblyManager.d.ts +5 -5
  45. package/dist/AssemblyManager/AssemblyManager.js +19 -55
  46. package/dist/AssemblyManager/AssemblyTable.d.ts +8 -12
  47. package/dist/AssemblyManager/AssemblyTable.js +42 -35
  48. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +2 -3
  49. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +22 -50
  50. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +2 -3
  51. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +7 -35
  52. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +2 -3
  53. package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +21 -11
  54. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +1 -2
  55. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +8 -19
  56. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +3 -4
  57. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +9 -17
  58. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +3 -4
  59. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +14 -27
  60. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +3 -4
  61. package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +10 -19
  62. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +2 -3
  63. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +21 -58
  64. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +3 -4
  65. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +22 -26
  66. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.d.ts +9 -0
  67. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.js +71 -0
  68. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +2 -3
  69. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +3 -5
  70. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +2 -3
  71. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +47 -82
  72. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +3 -4
  73. package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +17 -112
  74. package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +4 -5
  75. package/dist/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +7 -32
  76. package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +2 -3
  77. package/dist/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +5 -9
  78. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +2 -3
  79. package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +124 -124
  80. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +2 -3
  81. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +8 -17
  82. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +3 -4
  83. package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +5 -40
  84. package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +2 -3
  85. package/dist/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +6 -10
  86. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +2 -3
  87. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +46 -78
  88. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +3 -4
  89. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +19 -15
  90. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +3 -4
  91. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +6 -8
  92. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +2 -3
  93. package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +6 -19
  94. package/dist/HierarchicalTrackSelectorWidget/components/util.d.ts +4 -4
  95. package/dist/HierarchicalTrackSelectorWidget/components/util.js +1 -4
  96. package/dist/HierarchicalTrackSelectorWidget/facetedModel.d.ts +2 -61
  97. package/dist/HierarchicalTrackSelectorWidget/facetedModel.js +14 -76
  98. package/dist/HierarchicalTrackSelectorWidget/filterTracks.d.ts +1 -1
  99. package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -2
  100. package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.js +0 -13
  101. package/dist/HierarchicalTrackSelectorWidget/index.d.ts +1 -1
  102. package/dist/HierarchicalTrackSelectorWidget/index.js +20 -10
  103. package/dist/HierarchicalTrackSelectorWidget/model.d.ts +3 -177
  104. package/dist/HierarchicalTrackSelectorWidget/model.js +3 -183
  105. package/dist/HierarchicalTrackSelectorWidget/util.d.ts +2 -2
  106. package/dist/HierarchicalTrackSelectorWidget/util.js +0 -3
  107. package/dist/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +2 -3
  108. package/dist/PluginStoreWidget/components/AddCustomPluginDialog.js +19 -59
  109. package/dist/PluginStoreWidget/components/DeletePluginDialog.d.ts +1 -2
  110. package/dist/PluginStoreWidget/components/DeletePluginDialog.js +10 -23
  111. package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts +3 -4
  112. package/dist/PluginStoreWidget/components/InstalledPlugin.js +45 -37
  113. package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts +3 -4
  114. package/dist/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
  115. package/dist/PluginStoreWidget/components/PluginCard.d.ts +4 -6
  116. package/dist/PluginStoreWidget/components/PluginCard.js +25 -55
  117. package/dist/PluginStoreWidget/components/PluginStoreWidget.d.ts +2 -3
  118. package/dist/PluginStoreWidget/components/PluginStoreWidget.js +53 -61
  119. package/dist/PluginStoreWidget/components/util.d.ts +1 -1
  120. package/dist/PluginStoreWidget/components/util.js +0 -1
  121. package/dist/PluginStoreWidget/index.d.ts +1 -1
  122. package/dist/PluginStoreWidget/index.js +18 -8
  123. package/dist/PluginStoreWidget/model.d.ts +2 -8
  124. package/dist/PluginStoreWidget/model.js +1 -19
  125. package/dist/{ucsc-trackhub → UCSCTrackHub}/configSchema.d.ts +0 -6
  126. package/dist/{ucsc-trackhub → UCSCTrackHub}/configSchema.js +2 -14
  127. package/{esm/ucsc-trackhub → dist/UCSCTrackHub}/doConnect.d.ts +1 -1
  128. package/dist/{ucsc-trackhub → UCSCTrackHub}/doConnect.js +19 -15
  129. package/dist/{ucsc-trackhub → UCSCTrackHub}/index.d.ts +1 -1
  130. package/dist/{ucsc-trackhub → UCSCTrackHub}/index.js +11 -9
  131. package/dist/{ucsc-trackhub → UCSCTrackHub}/model.d.ts +1 -14
  132. package/dist/{ucsc-trackhub → UCSCTrackHub}/model.js +18 -23
  133. package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.js +0 -3
  134. package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.d.ts +54 -37
  135. package/dist/UCSCTrackHub/ucscTrackHub.js +170 -0
  136. package/dist/UCSCTrackHub/util.d.ts +22 -0
  137. package/dist/UCSCTrackHub/util.js +41 -0
  138. package/dist/index.d.ts +11 -11
  139. package/dist/index.js +21 -11
  140. package/esm/AddConnectionWidget/components/AddConnectionWidget.d.ts +1 -2
  141. package/esm/AddConnectionWidget/components/AddConnectionWidget.js +31 -39
  142. package/esm/AddConnectionWidget/components/ConfigureConnection.d.ts +4 -5
  143. package/esm/AddConnectionWidget/components/ConfigureConnection.js +5 -5
  144. package/esm/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +2 -3
  145. package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js +6 -9
  146. package/esm/AddConnectionWidget/index.d.ts +1 -1
  147. package/esm/AddConnectionWidget/index.js +1 -1
  148. package/esm/AddConnectionWidget/model.js +1 -1
  149. package/esm/AddTrackWidget/components/AddTrackStatusMessage.d.ts +9 -0
  150. package/esm/AddTrackWidget/components/AddTrackStatusMessage.js +13 -0
  151. package/esm/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts +4 -0
  152. package/esm/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js +13 -0
  153. package/esm/AddTrackWidget/components/AddTrackWidget.d.ts +2 -3
  154. package/esm/AddTrackWidget/components/AddTrackWidget.js +7 -12
  155. package/esm/AddTrackWidget/components/ConfirmTrack.d.ts +2 -3
  156. package/esm/AddTrackWidget/components/ConfirmTrack.js +39 -75
  157. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts +2 -3
  158. package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +25 -85
  159. package/esm/AddTrackWidget/components/PasteConfigWorkflow.d.ts +2 -3
  160. package/esm/AddTrackWidget/components/PasteConfigWorkflow.js +31 -28
  161. package/esm/AddTrackWidget/components/TextIndexingConfig.d.ts +2 -3
  162. package/esm/AddTrackWidget/components/TextIndexingConfig.js +39 -54
  163. package/esm/AddTrackWidget/components/TrackAdapterSelector.d.ts +2 -3
  164. package/esm/AddTrackWidget/components/TrackAdapterSelector.js +13 -37
  165. package/esm/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -3
  166. package/esm/AddTrackWidget/components/TrackSourceSelect.js +4 -7
  167. package/esm/AddTrackWidget/components/TrackTypeSelector.d.ts +3 -4
  168. package/esm/AddTrackWidget/components/TrackTypeSelector.js +8 -14
  169. package/esm/AddTrackWidget/components/Unsupported.d.ts +1 -0
  170. package/esm/AddTrackWidget/components/Unsupported.js +12 -0
  171. package/esm/AddTrackWidget/components/doSubmit.d.ts +4 -0
  172. package/esm/AddTrackWidget/components/doSubmit.js +47 -0
  173. package/esm/AddTrackWidget/components/util.d.ts +2 -0
  174. package/esm/AddTrackWidget/components/util.js +12 -0
  175. package/esm/AddTrackWidget/index.d.ts +1 -1
  176. package/esm/AddTrackWidget/index.js +1 -1
  177. package/esm/AddTrackWidget/model.d.ts +16 -84
  178. package/esm/AddTrackWidget/model.js +43 -94
  179. package/esm/AssemblyManager/AssemblyAddForm.d.ts +5 -6
  180. package/esm/AssemblyManager/AssemblyAddForm.js +82 -102
  181. package/esm/AssemblyManager/AssemblyEditor.d.ts +4 -4
  182. package/esm/AssemblyManager/AssemblyEditor.js +7 -4
  183. package/esm/AssemblyManager/AssemblyManager.d.ts +5 -5
  184. package/esm/AssemblyManager/AssemblyManager.js +19 -32
  185. package/esm/AssemblyManager/AssemblyTable.d.ts +8 -12
  186. package/esm/AssemblyManager/AssemblyTable.js +43 -36
  187. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts +2 -3
  188. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +22 -27
  189. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +2 -3
  190. package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +7 -12
  191. package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts +2 -3
  192. package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +21 -11
  193. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts +1 -2
  194. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +8 -16
  195. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts +3 -4
  196. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +9 -14
  197. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts +3 -4
  198. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +14 -27
  199. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts +3 -4
  200. package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +10 -16
  201. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.d.ts +2 -3
  202. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilter.js +21 -35
  203. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts +3 -4
  204. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +22 -26
  205. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.d.ts +9 -0
  206. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDataGrid.js +69 -0
  207. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts +2 -3
  208. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +3 -5
  209. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts +2 -3
  210. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +47 -59
  211. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts +3 -4
  212. package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +17 -89
  213. package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.d.ts +4 -5
  214. package/esm/HierarchicalTrackSelectorWidget/components/tree/DropdownTrackSelector.js +7 -9
  215. package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.d.ts +2 -3
  216. package/esm/HierarchicalTrackSelectorWidget/components/tree/FavoriteTracks.js +5 -9
  217. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts +2 -3
  218. package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +108 -118
  219. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts +2 -3
  220. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +8 -17
  221. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +3 -4
  222. package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +5 -17
  223. package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.d.ts +2 -3
  224. package/esm/HierarchicalTrackSelectorWidget/components/tree/RecentlyUsedTracks.js +6 -10
  225. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts +2 -3
  226. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +46 -55
  227. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts +3 -4
  228. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +19 -15
  229. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.d.ts +3 -4
  230. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js +6 -8
  231. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts +2 -3
  232. package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +6 -19
  233. package/esm/HierarchicalTrackSelectorWidget/components/util.d.ts +4 -4
  234. package/esm/HierarchicalTrackSelectorWidget/components/util.js +1 -4
  235. package/esm/HierarchicalTrackSelectorWidget/facetedModel.d.ts +2 -61
  236. package/esm/HierarchicalTrackSelectorWidget/facetedModel.js +12 -74
  237. package/esm/HierarchicalTrackSelectorWidget/filterTracks.d.ts +1 -1
  238. package/esm/HierarchicalTrackSelectorWidget/filterTracks.js +1 -1
  239. package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +2 -2
  240. package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.js +1 -14
  241. package/esm/HierarchicalTrackSelectorWidget/index.d.ts +1 -1
  242. package/esm/HierarchicalTrackSelectorWidget/index.js +3 -3
  243. package/esm/HierarchicalTrackSelectorWidget/model.d.ts +3 -177
  244. package/esm/HierarchicalTrackSelectorWidget/model.js +4 -184
  245. package/esm/HierarchicalTrackSelectorWidget/util.d.ts +2 -2
  246. package/esm/HierarchicalTrackSelectorWidget/util.js +1 -4
  247. package/esm/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +2 -3
  248. package/esm/PluginStoreWidget/components/AddCustomPluginDialog.js +19 -36
  249. package/esm/PluginStoreWidget/components/DeletePluginDialog.d.ts +1 -2
  250. package/esm/PluginStoreWidget/components/DeletePluginDialog.js +10 -20
  251. package/esm/PluginStoreWidget/components/InstalledPlugin.d.ts +3 -4
  252. package/esm/PluginStoreWidget/components/InstalledPlugin.js +28 -30
  253. package/esm/PluginStoreWidget/components/InstalledPluginsList.d.ts +3 -4
  254. package/esm/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
  255. package/esm/PluginStoreWidget/components/PluginCard.d.ts +4 -6
  256. package/esm/PluginStoreWidget/components/PluginCard.js +27 -34
  257. package/esm/PluginStoreWidget/components/PluginStoreWidget.d.ts +2 -3
  258. package/esm/PluginStoreWidget/components/PluginStoreWidget.js +36 -54
  259. package/esm/PluginStoreWidget/components/util.d.ts +1 -1
  260. package/esm/PluginStoreWidget/components/util.js +1 -2
  261. package/esm/PluginStoreWidget/index.d.ts +1 -1
  262. package/esm/PluginStoreWidget/index.js +1 -1
  263. package/esm/PluginStoreWidget/model.d.ts +2 -8
  264. package/esm/PluginStoreWidget/model.js +1 -19
  265. package/esm/{ucsc-trackhub → UCSCTrackHub}/configSchema.d.ts +0 -6
  266. package/esm/{ucsc-trackhub → UCSCTrackHub}/configSchema.js +2 -14
  267. package/{dist/ucsc-trackhub → esm/UCSCTrackHub}/doConnect.d.ts +1 -1
  268. package/esm/{ucsc-trackhub → UCSCTrackHub}/doConnect.js +12 -8
  269. package/esm/{ucsc-trackhub → UCSCTrackHub}/index.d.ts +1 -1
  270. package/esm/UCSCTrackHub/index.js +15 -0
  271. package/esm/{ucsc-trackhub → UCSCTrackHub}/model.d.ts +1 -14
  272. package/esm/{ucsc-trackhub → UCSCTrackHub}/model.js +1 -16
  273. package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.js +0 -3
  274. package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscTrackHub.d.ts +54 -37
  275. package/esm/UCSCTrackHub/ucscTrackHub.js +162 -0
  276. package/esm/UCSCTrackHub/util.d.ts +22 -0
  277. package/esm/UCSCTrackHub/util.js +33 -0
  278. package/esm/index.d.ts +11 -11
  279. package/esm/index.js +3 -3
  280. package/package.json +4 -3
  281. package/dist/ucsc-trackhub/ucscTrackHub.js +0 -208
  282. package/esm/ucsc-trackhub/index.js +0 -13
  283. package/esm/ucsc-trackhub/ucscTrackHub.js +0 -195
  284. /package/dist/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.d.ts +0 -0
  285. /package/esm/{ucsc-trackhub → UCSCTrackHub}/ucscAssemblies.d.ts +0 -0
@@ -1,17 +1,15 @@
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  "use strict";
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  Object.defineProperty(exports, "__esModule", { value: true });
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  exports.default = stateTreeFactory;
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- const mobx_state_tree_1 = require("mobx-state-tree");
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- const mobx_1 = require("mobx");
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  const configuration_1 = require("@jbrowse/core/configuration");
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  const util_1 = require("@jbrowse/core/util");
8
6
  const mst_1 = require("@jbrowse/core/util/types/mst");
9
- // locals
7
+ const mobx_1 = require("mobx");
8
+ const mobx_state_tree_1 = require("mobx-state-tree");
9
+ const facetedModel_1 = require("./facetedModel");
10
10
  const filterTracks_1 = require("./filterTracks");
11
11
  const generateHierarchy_1 = require("./generateHierarchy");
12
12
  const util_2 = require("./util");
13
- const facetedModel_1 = require("./facetedModel");
14
- // for settings that are config dependent
15
13
  function keyConfigPostFix() {
16
14
  return typeof window !== 'undefined'
17
15
  ? [
@@ -27,8 +25,6 @@ function recentlyUsedK(assemblyNames) {
27
25
  .filter(f => !!f)
28
26
  .join('-');
29
27
  }
30
- // this has a extra } at the end because that's how it was initially
31
- // released
32
28
  function favoritesK() {
33
29
  return `favoriteTracks-${keyConfigPostFix()}}`;
34
30
  }
@@ -58,185 +54,86 @@ function localStorageSetJSON(key, val) {
58
54
  }
59
55
  }
60
56
  const MAX_RECENTLY_USED = 10;
61
- /**
62
- * #stateModel HierarchicalTrackSelectorWidget
63
- */
64
57
  function stateTreeFactory(pluginManager) {
65
58
  return mobx_state_tree_1.types
66
59
  .model('HierarchicalTrackSelectorWidget', {
67
- /**
68
- * #property
69
- */
70
60
  id: mst_1.ElementId,
71
- /**
72
- * #property
73
- */
74
61
  type: mobx_state_tree_1.types.literal('HierarchicalTrackSelectorWidget'),
75
- /**
76
- * #property
77
- */
78
62
  view: mobx_state_tree_1.types.safeReference(pluginManager.pluggableMstType('view', 'stateModel')),
79
- /**
80
- * #property
81
- */
82
63
  faceted: mobx_state_tree_1.types.optional((0, facetedModel_1.facetedStateTreeF)(), {}),
83
64
  })
84
65
  .volatile(() => ({
85
- /**
86
- * #volatile
87
- */
88
66
  favorites: localStorageGetJSON(favoritesK(), []),
89
- /**
90
- * #volatile
91
- */
92
67
  recentlyUsed: [],
93
- /**
94
- * #volatile
95
- */
96
68
  selection: [],
97
- /**
98
- * #volatile
99
- */
100
69
  sortTrackNames: localStorageGetJSON(sortTrackNamesK(), undefined),
101
- /**
102
- * #volatile
103
- */
104
70
  sortCategories: localStorageGetJSON(sortCategoriesK(), undefined),
105
- /**
106
- * #volatile
107
- */
108
71
  collapsed: mobx_1.observable.map(),
109
- /**
110
- * #volatile
111
- */
112
72
  filterText: '',
113
- /**
114
- * #volatile
115
- */
116
73
  recentlyUsedCounter: 0,
117
- /**
118
- * #volatile
119
- */
120
74
  favoritesCounter: 0,
121
75
  }))
122
76
  .views(self => ({
123
- /**
124
- * #getter
125
- */
126
77
  get shownTrackIds() {
127
78
  var _a, _b;
128
79
  return new Set((_b = (_a = self.view) === null || _a === void 0 ? void 0 : _a.tracks) === null || _b === void 0 ? void 0 : _b.map((t) => t.configuration.trackId));
129
80
  },
130
- /**
131
- * #getter
132
- */
133
81
  get selectionSet() {
134
82
  return new Set(self.selection);
135
83
  },
136
- /**
137
- * #getter
138
- */
139
84
  get favoritesSet() {
140
85
  return new Set(self.favorites);
141
86
  },
142
- /**
143
- * #getter
144
- */
145
87
  get recentlyUsedSet() {
146
88
  return new Set(self.recentlyUsed);
147
89
  },
148
- /**
149
- * #getter
150
- */
151
90
  get assemblyNames() {
152
91
  var _a;
153
92
  return ((_a = self.view) === null || _a === void 0 ? void 0 : _a.assemblyNames) || [];
154
93
  },
155
94
  }))
156
95
  .actions(self => ({
157
- /**
158
- * #action
159
- */
160
96
  setSortTrackNames(val) {
161
97
  self.sortTrackNames = val;
162
98
  },
163
- /**
164
- * #action
165
- */
166
99
  setSortCategories(val) {
167
100
  self.sortCategories = val;
168
101
  },
169
- /**
170
- * #action
171
- */
172
102
  setSelection(elt) {
173
103
  self.selection = elt;
174
104
  },
175
- /**
176
- * #action
177
- */
178
105
  addToSelection(elt) {
179
106
  self.selection = (0, util_1.dedupe)([...self.selection, ...elt], e => e.trackId);
180
107
  },
181
- /**
182
- * #action
183
- */
184
108
  removeFromSelection(elt) {
185
109
  const s = new Set(elt);
186
110
  self.selection = self.selection.filter(f => !s.has(f));
187
111
  },
188
- /**
189
- * #action
190
- */
191
112
  clearSelection() {
192
113
  self.selection = [];
193
114
  },
194
- /**
195
- * #action
196
- */
197
115
  addToFavorites(trackId) {
198
116
  self.favoritesCounter += 1;
199
117
  self.favorites = [...self.favorites, trackId];
200
118
  },
201
- /**
202
- * #action
203
- */
204
119
  removeFromFavorites(trackId) {
205
120
  self.favorites = self.favorites.filter(f => f !== trackId);
206
121
  },
207
- /**
208
- * #action
209
- */
210
122
  clearFavorites() {
211
123
  self.favorites = [];
212
124
  },
213
- /**
214
- * #action
215
- */
216
125
  setRecentlyUsedCounter(val) {
217
126
  self.recentlyUsedCounter = val;
218
127
  },
219
- /**
220
- * #action
221
- */
222
128
  setRecentlyUsed(str) {
223
129
  self.recentlyUsed = str;
224
130
  },
225
- /**
226
- * #action
227
- */
228
131
  setFavorites(str) {
229
132
  self.favorites = str;
230
133
  },
231
- /**
232
- * #action
233
- */
234
134
  setFavoritesCounter(val) {
235
135
  self.favoritesCounter = val;
236
136
  },
237
- /**
238
- * #action
239
- */
240
137
  addToRecentlyUsed(id) {
241
138
  if (!self.recentlyUsed.includes(id)) {
242
139
  self.recentlyUsedCounter = Math.min(self.recentlyUsedCounter + 1, MAX_RECENTLY_USED);
@@ -246,77 +143,41 @@ function stateTreeFactory(pluginManager) {
246
143
  : [...self.recentlyUsed, id];
247
144
  }
248
145
  },
249
- /**
250
- * #action
251
- */
252
146
  clearRecentlyUsed() {
253
147
  self.recentlyUsed = [];
254
148
  },
255
- /**
256
- * #action
257
- */
258
149
  setView(view) {
259
150
  self.view = view;
260
151
  },
261
- /**
262
- * #action
263
- */
264
152
  toggleCategory(pathName) {
265
153
  self.collapsed.set(pathName, !self.collapsed.get(pathName));
266
154
  },
267
- /**
268
- * #action
269
- */
270
155
  setCategoryCollapsed(pathName, status) {
271
156
  self.collapsed.set(pathName, status);
272
157
  },
273
- /**
274
- * #action
275
- */
276
158
  expandAllCategories() {
277
159
  self.collapsed.clear();
278
160
  },
279
- /**
280
- * #action
281
- */
282
161
  setCollapsedCategories(str) {
283
162
  self.collapsed.replace(str);
284
163
  },
285
- /**
286
- * #action
287
- */
288
164
  clearFilterText() {
289
165
  self.filterText = '';
290
166
  },
291
- /**
292
- * #action
293
- */
294
167
  setFilterText(newText) {
295
168
  self.filterText = newText;
296
169
  },
297
170
  }))
298
171
  .views(self => ({
299
- /**
300
- * #method
301
- */
302
172
  isSelected(track) {
303
173
  return self.selectionSet.has(track);
304
174
  },
305
- /**
306
- * #method
307
- */
308
175
  isFavorite(trackId) {
309
176
  return self.favoritesSet.has(trackId);
310
177
  },
311
- /**
312
- * #method
313
- */
314
178
  isRecentlyUsed(trackId) {
315
179
  return self.recentlyUsedSet.has(trackId);
316
180
  },
317
- /**
318
- * #method
319
- */
320
181
  getRefSeqTrackConf(assemblyName) {
321
182
  const { assemblyManager } = (0, util_1.getSession)(self);
322
183
  const assembly = assemblyManager.get(assemblyName);
@@ -333,33 +194,20 @@ function stateTreeFactory(pluginManager) {
333
194
  },
334
195
  }))
335
196
  .views(self => ({
336
- /**
337
- * #getter
338
- */
339
197
  get activeSortTrackNames() {
340
198
  var _a;
341
199
  return ((_a = self.sortTrackNames) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)((0, util_1.getSession)(self), ['hierarchical', 'sort', 'trackNames']));
342
200
  },
343
- /**
344
- * #getter
345
- */
346
201
  get activeSortCategories() {
347
202
  var _a;
348
203
  return ((_a = self.sortCategories) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)((0, util_1.getSession)(self), ['hierarchical', 'sort', 'categories']));
349
204
  },
350
- /**
351
- * #getter
352
- * filter out tracks that don't match the current assembly/display types
353
- */
354
205
  get configAndSessionTrackConfigurations() {
355
206
  return [
356
207
  ...self.assemblyNames.map(a => self.getRefSeqTrackConf(a)),
357
208
  ...(0, filterTracks_1.filterTracks)((0, util_1.getSession)(self).tracks, self),
358
209
  ].filter(util_1.notEmpty);
359
210
  },
360
- /**
361
- * #getter
362
- */
363
211
  get allTrackConfigurations() {
364
212
  const { connectionInstances = [] } = (0, util_1.getSession)(self);
365
213
  return [
@@ -367,27 +215,16 @@ function stateTreeFactory(pluginManager) {
367
215
  ...connectionInstances.flatMap(c => c.tracks),
368
216
  ];
369
217
  },
370
- /**
371
- * #getter
372
- */
373
218
  get allTrackConfigurationTrackIdSet() {
374
219
  return new Map(this.allTrackConfigurations.map(t => [t.trackId, t]));
375
220
  },
376
221
  }))
377
222
  .views(self => ({
378
- /**
379
- * #getter
380
- * filters out tracks that are not in the favorites group
381
- */
382
223
  get favoriteTracks() {
383
224
  return self.favorites
384
225
  .filter(t => self.allTrackConfigurationTrackIdSet.has(t))
385
226
  .map(t => self.allTrackConfigurationTrackIdSet.get(t));
386
227
  },
387
- /**
388
- * #getter
389
- * filters out tracks that are not in the recently used group
390
- */
391
228
  get recentlyUsedTracks() {
392
229
  return self.recentlyUsed
393
230
  .filter(t => self.allTrackConfigurationTrackIdSet.has(t))
@@ -395,9 +232,6 @@ function stateTreeFactory(pluginManager) {
395
232
  },
396
233
  }))
397
234
  .views(self => ({
398
- /**
399
- * #getter
400
- */
401
235
  get allTracks() {
402
236
  const { connectionInstances = [] } = (0, util_1.getSession)(self);
403
237
  return [
@@ -417,9 +251,6 @@ function stateTreeFactory(pluginManager) {
417
251
  },
418
252
  }))
419
253
  .views(self => ({
420
- /**
421
- * #getter
422
- */
423
254
  get hierarchy() {
424
255
  return {
425
256
  name: 'Root',
@@ -443,9 +274,6 @@ function stateTreeFactory(pluginManager) {
443
274
  },
444
275
  }))
445
276
  .actions(self => ({
446
- /**
447
- * #action
448
- */
449
277
  collapseSubCategories() {
450
278
  const paths = [];
451
279
  (0, util_2.findSubCategories)(self.hierarchy.children, paths);
@@ -453,9 +281,6 @@ function stateTreeFactory(pluginManager) {
453
281
  self.setCategoryCollapsed(path, true);
454
282
  }
455
283
  },
456
- /**
457
- * #action
458
- */
459
284
  collapseTopLevelCategories() {
460
285
  const paths = [];
461
286
  for (const trackGroups of self.hierarchy.children) {
@@ -469,16 +294,12 @@ function stateTreeFactory(pluginManager) {
469
294
  },
470
295
  }))
471
296
  .views(self => ({
472
- /**
473
- * #getter
474
- */
475
297
  get hasAnySubcategories() {
476
298
  return self.allTracks.some(group => group.tracks.some(t => { var _a; return ((_a = (0, configuration_1.readConfObject)(t, 'category')) === null || _a === void 0 ? void 0 : _a.length) > 1; }));
477
299
  },
478
300
  }))
479
301
  .actions(self => ({
480
302
  afterAttach() {
481
- // this should be the first autorun to properly initialize
482
303
  (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
483
304
  const { assemblyNames, view } = self;
484
305
  self.setRecentlyUsed(localStorageGetJSON(recentlyUsedK(assemblyNames), []));
@@ -503,7 +324,6 @@ function stateTreeFactory(pluginManager) {
503
324
  }
504
325
  }
505
326
  }));
506
- // this should be the second autorun
507
327
  (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
508
328
  const { sortTrackNames, sortCategories, favorites, recentlyUsed, assemblyNames, collapsed, view, } = self;
509
329
  localStorageSetJSON(recentlyUsedK(assemblyNames), recentlyUsed);
@@ -1,5 +1,5 @@
1
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
2
- import { AbstractSessionModel } from '@jbrowse/core/util';
1
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
2
+ import type { AbstractSessionModel } from '@jbrowse/core/util';
3
3
  export declare function hasAnyOverlap<T>(a1?: T[], a2?: T[]): boolean;
4
4
  export declare function hasAllOverlap<T>(a1?: T[], a2?: T[]): boolean;
5
5
  export declare function matches(query: string, conf: AnyConfigurationModel, session: AbstractSessionModel): boolean;
@@ -8,8 +8,6 @@ exports.findTopLevelCategories = findTopLevelCategories;
8
8
  const configuration_1 = require("@jbrowse/core/configuration");
9
9
  const tracks_1 = require("@jbrowse/core/util/tracks");
10
10
  function hasAnyOverlap(a1 = [], a2 = []) {
11
- // shortcut case is that arrays are single entries, and are equal
12
- // long case is that we use a set
13
11
  if (a1[0] === a2[0]) {
14
12
  return true;
15
13
  }
@@ -33,7 +31,6 @@ function findSubCategories(obj, paths, depth = 0) {
33
31
  for (const elt of obj) {
34
32
  if (elt.children.length) {
35
33
  const hasSubCategories = findSubCategories(elt.children, paths, depth + 1);
36
- // avoid pushing the root "Tracks" node by checking depth>0
37
34
  if (hasSubCategories && depth > 0) {
38
35
  paths.push(elt.id);
39
36
  }
@@ -1,7 +1,6 @@
1
- import React from 'react';
2
- import { PluginStoreModel } from '../model';
1
+ import type { PluginStoreModel } from '../model';
3
2
  declare const AddCustomPluginDialog: ({ onClose, model, }: {
4
3
  onClose: () => void;
5
4
  model: PluginStoreModel;
6
- }) => React.JSX.Element;
5
+ }) => import("react/jsx-runtime").JSX.Element;
7
6
  export default AddCustomPluginDialog;
@@ -1,40 +1,17 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
4
  };
28
5
  Object.defineProperty(exports, "__esModule", { value: true });
29
- const react_1 = __importStar(require("react"));
30
- const mobx_react_1 = require("mobx-react");
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
+ const react_1 = require("react");
31
8
  const ui_1 = require("@jbrowse/core/ui");
32
- const material_1 = require("@mui/material");
33
- const mui_1 = require("tss-react/mui");
34
9
  const util_1 = require("@jbrowse/core/util");
35
- // icons
36
- const IconButton_1 = __importDefault(require("@mui/material/IconButton"));
37
10
  const ExpandMore_1 = __importDefault(require("@mui/icons-material/ExpandMore"));
11
+ const material_1 = require("@mui/material");
12
+ const IconButton_1 = __importDefault(require("@mui/material/IconButton"));
13
+ const mobx_react_1 = require("mobx-react");
14
+ const mui_1 = require("tss-react/mui");
38
15
  const useStyles = (0, mui_1.makeStyles)()(theme => ({
39
16
  dialogContent: {
40
17
  display: 'flex',
@@ -71,35 +48,18 @@ const AddCustomPluginDialog = (0, mobx_react_1.observer)(function ({ onClose, mo
71
48
  jbrowse.addPlugin({ cjsUrl: cjsPluginUrl });
72
49
  }
73
50
  }
74
- return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: onClose, title: "Add custom plugin" },
75
- react_1.default.createElement("form", { onSubmit: handleSubmit },
76
- react_1.default.createElement(material_1.DialogContent, { className: classes.dialogContent },
77
- react_1.default.createElement(material_1.DialogContentText, null, "Enter the name of the plugin and its URL. The name should match what is defined in the plugin's build."),
78
- react_1.default.createElement(material_1.TextField, { label: "Plugin name", variant: "outlined", value: umdPluginName, onChange: event => {
79
- setUMDPluginName(event.target.value);
80
- } }),
81
- react_1.default.createElement(material_1.TextField, { label: "Plugin URL", variant: "outlined", value: umdPluginUrl, onChange: event => {
82
- setUMDPluginUrl(event.target.value);
83
- } }),
84
- react_1.default.createElement(material_1.DialogContentText, { onClick: () => {
85
- setAdvancedOptionsOpen(!advancedOptionsOpen);
86
- } },
87
- react_1.default.createElement(IconButton_1.default, { className: cx(classes.expand, {
88
- [classes.expandOpen]: advancedOptionsOpen,
89
- }), "aria-expanded": advancedOptionsOpen, "aria-label": "show more" },
90
- react_1.default.createElement(ExpandMore_1.default, null)),
91
- "Advanced options"),
92
- react_1.default.createElement(material_1.Collapse, { in: advancedOptionsOpen },
93
- react_1.default.createElement("div", { className: classes.dialogContent },
94
- react_1.default.createElement(material_1.DialogContentText, null, "The above fields assume that the plugin is built in UMD format. If your plugin is in another format, or you have additional builds you want to add (such as a CJS build for using NodeJS APIs in desktop), you can enter the URLs for those builds below."),
95
- react_1.default.createElement(material_1.TextField, { label: "ESM build URL", variant: "outlined", value: esmPluginUrl, onChange: event => {
96
- setESMPluginUrl(event.target.value);
97
- } }),
98
- react_1.default.createElement(material_1.TextField, { label: "CJS build URL", variant: "outlined", value: cjsPluginUrl, onChange: event => {
99
- setCJSPluginUrl(event.target.value);
100
- } })))),
101
- react_1.default.createElement(material_1.DialogActions, null,
102
- react_1.default.createElement(material_1.Button, { variant: "contained", onClick: onClose }, "Cancel"),
103
- react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: handleSubmit, disabled: !ready }, "Submit")))));
51
+ return ((0, jsx_runtime_1.jsx)(ui_1.Dialog, { open: true, onClose: onClose, title: "Add custom plugin", children: (0, jsx_runtime_1.jsxs)("form", { onSubmit: handleSubmit, children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.dialogContent, children: [(0, jsx_runtime_1.jsx)(material_1.DialogContentText, { children: "Enter the name of the plugin and its URL. The name should match what is defined in the plugin's build." }), (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "Plugin name", variant: "outlined", value: umdPluginName, onChange: event => {
52
+ setUMDPluginName(event.target.value);
53
+ } }), (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "Plugin URL", variant: "outlined", value: umdPluginUrl, onChange: event => {
54
+ setUMDPluginUrl(event.target.value);
55
+ } }), (0, jsx_runtime_1.jsxs)(material_1.DialogContentText, { onClick: () => {
56
+ setAdvancedOptionsOpen(!advancedOptionsOpen);
57
+ }, children: [(0, jsx_runtime_1.jsx)(IconButton_1.default, { className: cx(classes.expand, {
58
+ [classes.expandOpen]: advancedOptionsOpen,
59
+ }), "aria-expanded": advancedOptionsOpen, "aria-label": "show more", children: (0, jsx_runtime_1.jsx)(ExpandMore_1.default, {}) }), "Advanced options"] }), (0, jsx_runtime_1.jsx)(material_1.Collapse, { in: advancedOptionsOpen, children: (0, jsx_runtime_1.jsxs)("div", { className: classes.dialogContent, children: [(0, jsx_runtime_1.jsx)(material_1.DialogContentText, { children: "The above fields assume that the plugin is built in UMD format. If your plugin is in another format, or you have additional builds you want to add (such as a CJS build for using NodeJS APIs in desktop), you can enter the URLs for those builds below." }), (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "ESM build URL", variant: "outlined", value: esmPluginUrl, onChange: event => {
60
+ setESMPluginUrl(event.target.value);
61
+ } }), (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "CJS build URL", variant: "outlined", value: cjsPluginUrl, onChange: event => {
62
+ setCJSPluginUrl(event.target.value);
63
+ } })] }) })] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", onClick: onClose, children: "Cancel" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", onClick: handleSubmit, disabled: !ready, children: "Submit" })] })] }) }));
104
64
  });
105
65
  exports.default = AddCustomPluginDialog;
@@ -1,5 +1,4 @@
1
- import React from 'react';
2
1
  export default function DeletePluginDialog({ onClose, plugin, }: {
3
2
  plugin: string;
4
3
  onClose: (s?: string) => void;
5
- }): React.JSX.Element;
4
+ }): import("react/jsx-runtime").JSX.Element;
@@ -1,30 +1,17 @@
1
1
  "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
2
  Object.defineProperty(exports, "__esModule", { value: true });
6
3
  exports.default = DeletePluginDialog;
7
- const react_1 = __importDefault(require("react"));
8
- const material_1 = require("@mui/material");
4
+ const jsx_runtime_1 = require("react/jsx-runtime");
9
5
  const ui_1 = require("@jbrowse/core/ui");
6
+ const material_1 = require("@mui/material");
10
7
  function DeletePluginDialog({ onClose, plugin, }) {
11
- return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: () => {
8
+ return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, title: `Remove ${plugin}`, onClose: () => {
12
9
  onClose();
13
- }, title: `Remove ${plugin}` },
14
- react_1.default.createElement(material_1.DialogContent, null,
15
- react_1.default.createElement(material_1.Typography, null,
16
- "Please confirm that you want to remove ",
17
- plugin,
18
- "."),
19
- react_1.default.createElement(material_1.Typography, { color: "error" }, "Note: if any resources in this session still use this plugin, it may cause your session to crash")),
20
- react_1.default.createElement(material_1.DialogActions, null,
21
- react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: () => {
22
- // avoid showing runtime plugin warning
23
- window.setTimeout(() => {
24
- onClose(plugin);
25
- }, 500);
26
- } }, "Confirm"),
27
- react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
28
- onClose();
29
- } }, "Cancel"))));
10
+ }, children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsxs)(material_1.Typography, { children: ["Please confirm that you want to remove ", plugin, "."] }), (0, jsx_runtime_1.jsx)(material_1.Typography, { color: "error", children: "Note: if any resources in this session still use this plugin, it may cause your session to crash" })] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", onClick: () => {
11
+ window.setTimeout(() => {
12
+ onClose(plugin);
13
+ }, 500);
14
+ }, children: "Confirm" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
15
+ onClose();
16
+ }, children: "Cancel" })] })] }));
30
17
  }
@@ -1,8 +1,7 @@
1
- import React from 'react';
2
- import { BasePlugin } from '@jbrowse/core/util/types';
3
- import { PluginStoreModel } from '../model';
1
+ import type { PluginStoreModel } from '../model';
2
+ import type { BasePlugin } from '@jbrowse/core/util/types';
4
3
  declare const InstalledPlugin: ({ plugin, model, }: {
5
4
  plugin: BasePlugin;
6
5
  model: PluginStoreModel;
7
- }) => React.JSX.Element;
6
+ }) => import("react/jsx-runtime").JSX.Element;
8
7
  export default InstalledPlugin;