@jbrowse/plugin-data-management 2.0.1 → 2.1.0

package/esm/HierarchicalTrackSelectorWidget/model.js

@@ -1,4 +1,4 @@
-import { types, getParent } from 'mobx-state-tree';
+import { types, getParent, getEnv } from 'mobx-state-tree';
 import { getConf, readConfObject, } from '@jbrowse/core/configuration';
 import { getSession } from '@jbrowse/core/util';
 import { ElementId } from '@jbrowse/core/util/types/mst';
@@ -9,7 +9,7 @@ function passesFilter(filter, config) {
     const categories = readConfObject(config, 'category');
     const filterLower = filter.toLowerCase();
     return (getTrackName(config).toLowerCase().includes(filterLower) ||
-        (categories === null || categories === void 0 ? void 0 : categories.filter(c => c.toLowerCase().includes(filterLower)).length));
+        !!(categories === null || categories === void 0 ? void 0 : categories.filter(c => c.toLowerCase().includes(filterLower)).length));
 }
 function getTrackName(config) {
     if (!config.trackId) {
@@ -18,6 +18,26 @@ function getTrackName(config) {
     return (readConfObject(config, 'name') ||
         `Reference sequence (${readConfObject(getParent(config), 'name')})`);
 }
+function filterTracks(tracks, self, assemblyName) {
+    const { assemblyManager } = getSession(self);
+    const { pluginManager } = getEnv(self);
+    const assembly = assemblyManager.get(assemblyName);
+    if (!assembly) {
+        return [];
+    }
+    return tracks
+        .filter(c => {
+        const trackConfAssemblies = readConfObject(c, 'assemblyNames');
+        const { allAliases } = assembly;
+        return hasAnyOverlap(allAliases, trackConfAssemblies);
+    })
+        .filter(c => {
+        const { displayTypes } = pluginManager.getViewType(self.view.type);
+        const compatDisplays = displayTypes.map((d) => d.name);
+        const trackDisplays = c.displays.map((d) => d.type);
+        return hasAnyOverlap(compatDisplays, trackDisplays);
+    });
+}
 export function generateHierarchy(model, trackConfigurations, collapsed) {
     const hierarchy = { children: [] };
     const { filterText, view } = model;
@@ -73,7 +93,19 @@ export default function stateTreeFactory(pluginManager) {
         filterText: '',
         view: types.safeReference(pluginManager.pluggableMstType('view', 'stateModel')),
     })
+        .volatile(() => ({
+        selection: [],
+    }))
         .actions(self => ({
+        addToSelection(elt) {
+            self.selection = [...self.selection, ...elt];
+        },
+        removeFromSelection(elt) {
+            self.selection = self.selection.filter(f => !elt.includes(f));
+        },
+        clearSelection() {
+            self.selection = [];
+        },
         setView(view) {
             self.view = view;
         },
@@ -117,18 +149,7 @@ export default function stateTreeFactory(pluginManager) {
             // filter out tracks that don't match the current assembly (check all
             // assembly aliases) and display types
             return (refseq ? [refseq] : []).concat([
-                ...tracks
-                    .filter(c => {
-                    const trackConfAssemblies = readConfObject(c, 'assemblyNames');
-                    const { allAliases } = assembly;
-                    return hasAnyOverlap(allAliases, trackConfAssemblies);
-                })
-                    .filter(c => {
-                    const { displayTypes } = pluginManager.getViewType(self.view.type);
-                    const compatibleDisplays = displayTypes.map(d => d.name);
-                    const trackDisplays = c.displays.map((d) => d.type);
-                    return hasAnyOverlap(compatibleDisplays, trackDisplays);
-                }),
+                ...filterTracks(tracks, self, assemblyName),
             ]);
         },
         get assemblyNames() {
@@ -139,25 +160,8 @@ export default function stateTreeFactory(pluginManager) {
             if (!self.view) {
                 return [];
             }
-            const trackConfigurations = connection.tracks;
-            const { assemblyManager } = getSession(self);
-            const assembly = assemblyManager.get(assemblyName);
-            if (!(assembly && assembly.initialized)) {
-                return [];
-            }
             // filter out tracks that don't match the current display types
-            return trackConfigurations
-                .filter(c => {
-                const trackConfAssemblies = readConfObject(c, 'assemblyNames');
-                const { allAliases } = assembly;
-                return hasAnyOverlap(allAliases, trackConfAssemblies);
-            })
-                .filter(c => {
-                const { displayTypes } = pluginManager.getViewType(self.view.type);
-                const compatibleDisplays = displayTypes.map(d => d.name);
-                const trackDisplays = c.displays.map((d) => d.type);
-                return hasAnyOverlap(compatibleDisplays, trackDisplays);
-            });
+            return filterTracks(connection.tracks, self, assemblyName);
         },
     }))
         .views(self => ({

package/esm/HierarchicalTrackSelectorWidget/model.js.map

@@ -1 +1 @@
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+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAY,MAAM,iBAAiB,CAAA;AACpE,OAAO,EACL,OAAO,EACP,cAAc,GAEf,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAA;AAGxD,SAAS,aAAa,CAAI,KAAU,EAAE,EAAE,KAAU,EAAE;IAClD,OAAO,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,SAAS,YAAY,CAAC,MAAc,EAAE,MAA6B;IACjE,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,EAAE,UAAU,CAAyB,CAAA;IAC7E,MAAM,WAAW,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;IACxC,OAAO,CACL,YAAY,CAAC,MAAM,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;QACxD,CAAC,CAAC,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC,EAAE,MAAM,CAAA,CACxE,CAAA;AACH,CAAC;AAED,SAAS,YAAY,CAAC,MAA6B;IACjD,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE;QACnB,MAAM,IAAI,KAAK,CAAC,aAAa,CAAC,CAAA;KAC/B;IACD,OAAO,CACL,cAAc,CAAC,MAAM,EAAE,MAAM,CAAC;QAC9B,uBAAuB,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC,GAAG,CACpE,CAAA;AACH,CAAC;AAWD,SAAS,YAAY,CACnB,MAA+B,EAC/B,IAAgC,EAChC,YAAoB;IAEpB,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;IAC5C,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;IACtC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAElD,IAAI,CAAC,QAAQ,EAAE;QACb,OAAO,EAAE,CAAA;KACV;IACD,OAAO,MAAM;SACV,MAAM,CAAC,CAAC,CAAC,EAAE;QACV,MAAM,mBAAmB,GAAG,cAAc,CAAC,CAAC,EAAE,eAAe,CAAC,CAAA;QAC9D,MAAM,EAAE,UAAU,EAAE,GAAG,QAAQ,CAAA;QAC/B,OAAO,aAAa,CAAC,UAAU,EAAE,mBAAmB,CAAC,CAAA;IACvD,CAAC,CAAC;SACD,MAAM,CAAC,CAAC,CAAC,EAAE;QACV,MAAM,EAAE,YAAY,EAAE,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClE,MAAM,cAAc,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACxE,MAAM,aAAa,GAAG,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACrE,OAAO,aAAa,CAAC,cAAc,EAAE,aAAa,CAAC,CAAA;IACrD,CAAC,CAAC,CAAA;AACN,CAAC;AAED,MAAM,UAAU,iBAAiB,CAC/B,KAAqC,EACrC,mBAA4C,EAC5C,SAAwD;IAExD,MAAM,SAAS,GAAG,EAAE,QAAQ,EAAE,EAAgB,EAAc,CAAA;IAC5D,MAAM,EAAE,UAAU,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAElC,mBAAmB;SAChB,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,YAAY,CAAC,UAAU,EAAE,IAAI,CAAC,CAAC;SAC9C,OAAO,CAAC,IAAI,CAAC,EAAE;QACd,iEAAiE;QACjE,MAAM,UAAU,GAAG,CAAC,GAAG,CAAC,cAAc,CAAC,IAAI,EAAE,UAAU,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;QAEhE,uEAAuE;QACvE,kEAAkE;QAClE,0BAA0B;QAC1B,IAAI,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAC,EAAE;YACzC,UAAU,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;SACtC;QAED,IAAI,SAAS,GAAG,SAAS,CAAA;QAEzB,wDAAwD;QACxD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC1C,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;YAC9B,MAAM,GAAG,GAAG,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAA;YAC7D,MAAM,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;YAC/C,IAAI,CAAC,GAAG,EAAE;gBACR,MAAM,CAAC,GAAG;oBACR,QAAQ,EAAE,EAAE;oBACZ,IAAI,EAAE,QAAQ;oBACd,EAAE;oBACF,eAAe,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC;iBACpC,CAAA;gBACD,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBAC1B,SAAS,GAAG,CAAC,CAAA;aACd;iBAAM;gBACL,SAAS,GAAG,GAAG,CAAA;aAChB;SACF;QACD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAoD,CAAA;QAExE,uEAAuE;QACvE,SAAS,CAAC,QAAQ,CAAC,MAAM,CACvB,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,QAAQ,CAAC,MAAM,CAAC,EACxD,CAAC,EACD;YACE,EAAE,EAAE,IAAI,CAAC,OAAO;YAChB,IAAI,EAAE,YAAY,CAAC,IAAI,CAAC;YACxB,IAAI;YACJ,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,KAAK,IAAI,CAAC;YACrD,QAAQ,EAAE,EAAE;SACb,CACF,CAAA;IACH,CAAC,CAAC,CAAA;IAEJ,OAAO,SAAS,CAAC,QAAQ,CAAA;AAC3B,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,gBAAgB,CAAC,aAA4B;IACnE,OAAO,KAAK;SACT,KAAK,CAAC,iCAAiC,EAAE;QACxC,EAAE,EAAE,SAAS;QACb,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,iCAAiC,CAAC;QACtD,SAAS,EAAE,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC;QACnC,UAAU,EAAE,EAAE;QACd,IAAI,EAAE,KAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;KACF,CAAC;SACD,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,SAAS,EAAE,EAA6B;KACzC,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,cAAc,CAAC,GAA4B;YACzC,IAAI,CAAC,SAAS,GAAG,CAAC,GAAG,IAAI,CAAC,SAAS,EAAE,GAAG,GAAG,CAAC,CAAA;QAC9C,CAAC;QACD,mBAAmB,CAAC,GAA4B;YAC9C,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;QAC/D,CAAC;QACD,cAAc;YACZ,IAAI,CAAC,SAAS,GAAG,EAAE,CAAA;QACrB,CAAC;QACD,OAAO,CAAC,IAAa;YACnB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAClB,CAAC;QACD,cAAc,CAAC,QAAgB;YAC7B,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QAC7D,CAAC;QACD,eAAe;YACb,IAAI,CAAC,UAAU,GAAG,EAAE,CAAA;QACtB,CAAC;QACD,aAAa,CAAC,OAAe;YAC3B,IAAI,CAAC,UAAU,GAAG,OAAO,CAAA;QAC3B,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,kBAAkB,CAAC,YAAoB;YACrC,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAC5C,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;YAClD,MAAM,SAAS,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,aAAa,CAAC,QAAQ,CAAA;YAClD,MAAM,QAAQ,GAAG,aAAa,CAAC,WAAW,CA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package/esm/index.d.ts

@@ -1,6 +1,8 @@
 /// <reference types="react" />
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
+import { AddTrackModel } from './AddTrackWidget/model';
+import { HierarchicalTrackSelectorModel } from './HierarchicalTrackSelectorWidget';
 declare const SetDefaultSession: import("react").LazyExoticComponent<({ rootModel, onClose }: {
     rootModel?: unknown;
     onClose: () => void;
@@ -22,6 +24,7 @@ export default class extends Plugin {
         }) => JSX.Element | null>;
     };
     install(pluginManager: PluginManager): void;
-    configure(pluginManager: PluginManager): void;
+    configure(_pluginManager: PluginManager): void;
 }
 export { AssemblyManager, SetDefaultSession };
+export type { HierarchicalTrackSelectorModel, AddTrackModel };

package/esm/index.js

@@ -64,7 +64,7 @@ export default class extends Plugin {
             });
         });
     }
-    configure(pluginManager) { }
+    configure(_pluginManager) { }
 }
 export { AssemblyManager, SetDefaultSession };
 //# sourceMappingURL=index.js.map

package/esm/index.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-data-management",
-  "version": "2.0.1",
+  "version": "2.1.0",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -62,5 +62,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "ed935bf5612af3818abdc8ef52d100d5d81d33a2"
+  "gitHead": "0db0462fa1f9f15ab4869da085bcab032b9483c3"
 }

package/src/AddTrackWidget/components/{AddTrackWidget.test.js → AddTrackWidget.test.tsx}

@@ -1,15 +1,19 @@
 import React from 'react'
-import { render, cleanup, fireEvent } from '@testing-library/react'
+import { render, fireEvent } from '@testing-library/react'
 import { createTestSession } from '@jbrowse/web/src/rootModel'
 import AddTrackWidget from './AddTrackWidget'
+import { AddTrackModel } from '../model'
+import { AbstractSessionModel } from '@jbrowse/core/util'
 jest.mock('@jbrowse/web/src/makeWorkerInstance', () => () => {})
 
 describe('<AddTrackWidget />', () => {
-  let session
-  let model
+  let session: AbstractSessionModel
+  let model: AddTrackModel
 
   beforeAll(() => {
+    // @ts-ignore
     session = createTestSession()
+    // @ts-ignore
     session.addAssemblyConf({
       name: 'volMyt1',
       sequence: {
@@ -29,6 +33,7 @@ describe('<AddTrackWidget />', () => {
         },
       },
     })
+    // @ts-ignore
     session.addTrackConf({
       trackId: 'i3jUPmrgMOS',
       type: 'FeatureTrack',
@@ -77,6 +82,8 @@ describe('<AddTrackWidget />', () => {
       },
       filterAttributes: ['type', 'start', 'end'],
     })
+
+    // @ts-ignore
     const view = session.addView('LinearGenomeView', {
       displayedRegions: [
         {
@@ -87,22 +94,18 @@ describe('<AddTrackWidget />', () => {
         },
       ],
     })
+
+    // @ts-ignore
     model = session.addWidget('AddTrackWidget', 'addTrackWidget', {
       view: view.id,
     })
   })
 
-  afterEach(cleanup)
-
-  it('renders', () => {
-    const { container } = render(<AddTrackWidget model={model} />)
-    expect(container.firstChild).toMatchSnapshot()
-  })
-
   it('adds a track', async () => {
     const { getByTestId, getAllByTestId, findByText, findAllByText } = render(
       <AddTrackWidget model={model} />,
     )
+    // @ts-ignore
     expect(session.sessionTracks.length).toBe(1)
     fireEvent.change(getAllByTestId('urlInput')[0], {
       target: { value: 'test.txt' },
@@ -114,31 +117,13 @@ describe('<AddTrackWidget />', () => {
     fireEvent.change(getByTestId('trackNameInput'), {
       target: { value: 'Test track name' },
     })
-    const trackTypeSelect = getByTestId('trackTypeSelect')
-    fireEvent.mouseDown(trackTypeSelect)
-    const featureTrack = await findByText('FeatureTrack')
-    fireEvent.click(featureTrack)
-    const assemblyNameSelect = getByTestId('assemblyNameSelect')
-    fireEvent.mouseDown(assemblyNameSelect)
+    fireEvent.mouseDown(getByTestId('trackTypeSelect'))
+    fireEvent.click(await findByText('FeatureTrack'))
+    fireEvent.mouseDown(getByTestId('assemblyNameSelect'))
     const volMyt1 = await findAllByText('volMyt1')
     fireEvent.click(volMyt1[1])
     fireEvent.click(getAllByTestId('addTrackNextButton')[0])
-    expect(session.sessionTracks.length).toBe(2)
-  })
-
-  xit('fails to add a track', async () => {
-    const { getByTestId, getAllByTestId, findByText } = render(
-      <AddTrackWidget model={model} />,
-    )
-    expect(session.sessionTracks.length).toBe(2)
-    fireEvent.change(getAllByTestId('urlInput')[0], {
-      target: { value: 'test.txt' },
-    })
-    fireEvent.click(getAllByTestId('addTrackNextButton')[0])
-    fireEvent.mouseDown(getByTestId('adapterTypeSelect'))
-    const chrom = await findByText('ChromSizesAdapter')
-    fireEvent.click(chrom)
-    fireEvent.click(getAllByTestId('addTrackNextButton')[0])
+    // @ts-ignore
     expect(session.sessionTracks.length).toBe(2)
   })
 })

package/src/AddTrackWidget/components/AddTrackWidget.tsx

@@ -1,209 +1,45 @@
-import React, { useState } from 'react'
-import {
-  Alert,
-  Button,
-  Step,
-  StepContent,
-  StepLabel,
-  Stepper,
-  Typography,
-} from '@mui/material'
-import { makeStyles } from 'tss-react/mui'
-import {
-  getSession,
-  isElectron,
-  supportedIndexingAdapters,
-} from '@jbrowse/core/util'
-import { getConf } from '@jbrowse/core/configuration'
+import React from 'react'
 import { observer } from 'mobx-react'
+import { FormControl, FormHelperText, Select, MenuItem } from '@mui/material'
+import { AddTrackWorkflowType } from '@jbrowse/core/pluggableElementTypes'
+import { useLocalStorage } from '@jbrowse/core/util'
 import { getEnv } from 'mobx-state-tree'
 
 // locals
-import ConfirmTrack from './ConfirmTrack'
-import TrackSourceSelect from './TrackSourceSelect'
 import { AddTrackModel } from '../model'
-
-const useStyles = makeStyles()(theme => ({
-  root: {
-    marginTop: theme.spacing(1),
-  },
-  stepper: {
-    backgroundColor: theme.palette.background.default,
-  },
-  button: {
-    marginTop: theme.spacing(1),
-    marginRight: theme.spacing(1),
-  },
-  actionsContainer: {
-    marginBottom: theme.spacing(2),
-  },
-  stepContent: {
-    margin: theme.spacing(1),
-  },
-  alertContainer: {
-    padding: `${theme.spacing(2)}px 0px ${theme.spacing(2)}px 0px`,
-  },
-}))
-
-const steps = ['Enter track data', 'Confirm track type']
-
-function AddTrackWidget({ model }: { model: AddTrackModel }) {
-  const [activeStep, setActiveStep] = useState(0)
-  const { classes } = useStyles()
-  const session = getSession(model)
-  const { pluginManager } = getEnv(session)
-  const { rootModel } = pluginManager
-  const { jobsManager } = rootModel
-  const {
-    assembly,
-    trackAdapter,
-    trackData,
-    trackName,
-    trackType,
-    textIndexTrack,
-    textIndexingConf,
-  } = model
-  const [trackErrorMessage, setTrackErrorMessage] = useState<string>()
-
-  function getStepContent(step: number) {
-    switch (step) {
-      case 0:
-        return <TrackSourceSelect model={model} />
-      case 1:
-        return <ConfirmTrack model={model} />
-      default:
-        return <Typography>Unknown step</Typography>
-    }
-  }
-
-  async function handleNext() {
-    if (activeStep !== steps.length - 1) {
-      setActiveStep(activeStep + 1)
-      return
-    }
-
-    const trackId = `${trackName
-      .toLowerCase()
-      .replace(/ /g, '_')}-${Date.now()}${
-      session.adminMode ? '' : '-sessionTrack'
-    }`
-
-    const assemblyInstance = session.assemblyManager.get(assembly)
-
-    if (trackAdapter && trackAdapter.type !== 'UNKNOWN') {
-      // @ts-ignore
-      session.addTrackConf({
-        trackId,
-        type: trackType,
-        name: trackName,
-        assemblyNames: [assembly],
-        adapter: {
-          ...trackAdapter,
-          sequenceAdapter: getConf(assemblyInstance, ['sequence', 'adapter']),
-        },
-      })
-      const textSearchingDefault = {
-        attributes: ['Name', 'ID'],
-        exclude: ['CDS', 'exon'],
-      }
-      if (model.view) {
-        model.view.showTrack(trackId)
-        if (isElectron) {
-          if (textIndexTrack && supportedIndexingAdapters(trackAdapter.type)) {
-            const attr = textIndexingConf || textSearchingDefault
-            const indexName = trackName + '-index'
-            const indexingParams = {
-              ...attr,
-              assemblies: [assembly],
-              tracks: [trackId],
-              indexType: 'perTrack',
-              name: indexName,
-              timestamp: new Date().toISOString(),
-            }
-            const newEntry = {
-              indexingParams: indexingParams,
-              name: indexName,
-              cancelCallback: () => {
-                jobsManager.abortJob()
-              },
-            }
-            jobsManager.queueJob(newEntry)
-          }
-        }
-      } else {
-        session.notify(
-          'Open a new view, or use the track selector in an existing view, to view this track',
-          'info',
-        )
-      }
-      model.clearData()
-      // @ts-ignore
-      session.hideWidget(model)
-    } else {
-      setTrackErrorMessage(
-        'Failed to add track.\nThe configuration of this file is not currently supported.',
-      )
-    }
-  }
-
-  function handleBack() {
-    setTrackErrorMessage(undefined)
-    setActiveStep(activeStep - 1)
-  }
-
-  function isNextDisabled() {
-    switch (activeStep) {
-      case 0:
-        return !trackData
-      case 1:
-        return !(trackName && trackType && trackAdapter?.type && assembly)
-      default:
-        return true
-    }
-  }
-
+import DefaultAddTrackWorkflow from './DefaultAddTrackWorkflow'
+
+function AddTrackSelector({ model }: { model: AddTrackModel }) {
+  const [val, setVal] = useLocalStorage('trackSelector-choice', 'Default')
+  const { pluginManager } = getEnv(model)
+  const widgets = pluginManager.getElementTypesInGroup(
+    'add track workflow',
+  ) as AddTrackWorkflowType[]
+  const ComponentMap = {
+    Default: DefaultAddTrackWorkflow,
+    ...Object.fromEntries(widgets.map(w => [w.name, w.ReactComponent])),
+  } as { [key: string]: React.FC<{ model: AddTrackModel }> }
+
+  // make sure the selected value is in the list
+  const val2 = ComponentMap[val] ? val : 'Default'
+  const Component = ComponentMap[val2]
   return (
-    <div className={classes.root}>
-      <Stepper
-        className={classes.stepper}
-        activeStep={activeStep}
-        orientation="vertical"
-      >
-        {steps.map((label, idx) => (
-          <Step key={label}>
-            <StepLabel>{label}</StepLabel>
-            <StepContent>
-              {getStepContent(idx)}
-              <div className={classes.actionsContainer}>
-                <Button
-                  disabled={activeStep === 0}
-                  onClick={handleBack}
-                  className={classes.button}
-                >
-                  Back
-                </Button>
-                <Button
-                  disabled={isNextDisabled()}
-                  variant="contained"
-                  color="primary"
-                  onClick={handleNext}
-                  className={classes.button}
-                  data-testid="addTrackNextButton"
-                >
-                  {activeStep === steps.length - 1 ? 'Add' : 'Next'}
-                </Button>
-              </div>
-              {trackErrorMessage ? (
-                <div className={classes.alertContainer}>
-                  <Alert severity="error">{trackErrorMessage}</Alert>
-                </div>
-              ) : null}
-            </StepContent>
-          </Step>
-        ))}
-      </Stepper>
-    </div>
+    <>
+      <FormControl>
+        <Select value={val2} onChange={event => setVal(event.target.value)}>
+          {Object.keys(ComponentMap).map(e => (
+            <MenuItem key={e} value={e}>
+              {e}
+            </MenuItem>
+          ))}
+        </Select>
+        <FormHelperText>Type of add track workflow</FormHelperText>
+      </FormControl>
+
+      <br />
+      <Component model={model} />
+    </>
   )
 }
 
-export default observer(AddTrackWidget)
+export default observer(AddTrackSelector)

package/src/AddTrackWidget/components/ConfirmTrack.tsx

@@ -230,10 +230,9 @@ const TextIndexingConfig = observer(({ model }: { model: AddTrackModel }) => {
 
 const TrackAdapterSelector = observer(({ model }: { model: AddTrackModel }) => {
   const { classes } = useStyles()
-  const session = getSession(model)
   const { trackAdapter } = model
-  // prettier-ignore
-  const adapters = getAdapterTypes(getEnv(session).pluginManager)
+  const { pluginManager } = getEnv(model)
+  const adapters = getAdapterTypes(pluginManager)
   return (
     <TextField
       className={classes.spacing}
@@ -242,9 +241,7 @@ const TrackAdapterSelector = observer(({ model }: { model: AddTrackModel }) => {
       helperText="Select an adapter type"
       select
       fullWidth
-      onChange={event => {
-        model.setAdapterHint(event.target.value)
-      }}
+      onChange={event => model.setAdapterHint(event.target.value)}
       SelectProps={{
         // @ts-ignore
         SelectDisplayProps: { 'data-testid': 'adapterTypeSelect' },
@@ -264,10 +261,13 @@ const TrackAdapterSelector = observer(({ model }: { model: AddTrackModel }) => {
               : elt.name}
           </MenuItem>
         ))}
-      {/* adapters with the 'adapterMetadata.category' property are categorized by the value of the property here */}
-      {categorizeAdapters(
-        adapters.filter(elt => !elt.adapterMetadata?.hiddenFromGUI),
-      )}
+      {
+        // adapters with the 'adapterMetadata.category' property are categorized
+        // by the value of the property here
+        categorizeAdapters(
+          adapters.filter(elt => !elt.adapterMetadata?.hiddenFromGUI),
+        )
+      }
     </TextField>
   )
 })