@jbrowse/plugin-data-management 2.0.1 → 2.1.0

package/dist/AddTrackWidget/components/AddTrackWidget.d.ts

@@ -1,7 +1,7 @@
 /// <reference types="react" />
 import { AddTrackModel } from '../model';
-declare function AddTrackWidget({ model }: {
+declare function AddTrackSelector({ model }: {
     model: AddTrackModel;
 }): JSX.Element;
-declare const _default: typeof AddTrackWidget;
+declare const _default: typeof AddTrackSelector;
 export default _default;

package/dist/AddTrackWidget/components/AddTrackWidget.js

@@ -10,65 +10,6 @@ var __assign = (this && this.__assign) || function () {
     };
     return __assign.apply(this, arguments);
 };
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-var __generator = (this && this.__generator) || function (thisArg, body) {
-    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
-    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
-    function verb(n) { return function (v) { return step([n, v]); }; }
-    function step(op) {
-        if (f) throw new TypeError("Generator is already executing.");
-        while (_) try {
-            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
-            if (y = 0, t) op = [op[0] & 2, t.value];
-            switch (op[0]) {
-                case 0: case 1: t = op; break;
-                case 4: _.label++; return { value: op[1], done: false };
-                case 5: _.label++; y = op[1]; op = [0]; continue;
-                case 7: op = _.ops.pop(); _.trys.pop(); continue;
-                default:
-                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
-                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
-                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
-                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
-                    if (t[2]) _.ops.pop();
-                    _.trys.pop(); continue;
-            }
-            op = body.call(thisArg, _);
-        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
-        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
-    }
-};
 var __read = (this && this.__read) || function (o, n) {
     var m = typeof Symbol === "function" && o[Symbol.iterator];
     if (!m) return o;
@@ -89,139 +30,27 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-var react_1 = __importStar(require("react"));
+var react_1 = __importDefault(require("react"));
+var mobx_react_1 = require("mobx-react");
 var material_1 = require("@mui/material");
-var mui_1 = require("tss-react/mui");
 var util_1 = require("@jbrowse/core/util");
-var configuration_1 = require("@jbrowse/core/configuration");
-var mobx_react_1 = require("mobx-react");
 var mobx_state_tree_1 = require("mobx-state-tree");
-// locals
-var ConfirmTrack_1 = __importDefault(require("./ConfirmTrack"));
-var TrackSourceSelect_1 = __importDefault(require("./TrackSourceSelect"));
-var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
-    root: {
-        marginTop: theme.spacing(1),
-    },
-    stepper: {
-        backgroundColor: theme.palette.background.default,
-    },
-    button: {
-        marginTop: theme.spacing(1),
-        marginRight: theme.spacing(1),
-    },
-    actionsContainer: {
-        marginBottom: theme.spacing(2),
-    },
-    stepContent: {
-        margin: theme.spacing(1),
-    },
-    alertContainer: {
-        padding: "".concat(theme.spacing(2), "px 0px ").concat(theme.spacing(2), "px 0px"),
-    },
-}); });
-var steps = ['Enter track data', 'Confirm track type'];
-function AddTrackWidget(_a) {
+var DefaultAddTrackWorkflow_1 = __importDefault(require("./DefaultAddTrackWorkflow"));
+function AddTrackSelector(_a) {
     var model = _a.model;
-    var _b = __read((0, react_1.useState)(0), 2), activeStep = _b[0], setActiveStep = _b[1];
-    var classes = useStyles().classes;
-    var session = (0, util_1.getSession)(model);
-    var pluginManager = (0, mobx_state_tree_1.getEnv)(session).pluginManager;
-    var rootModel = pluginManager.rootModel;
-    var jobsManager = rootModel.jobsManager;
-    var assembly = model.assembly, trackAdapter = model.trackAdapter, trackData = model.trackData, trackName = model.trackName, trackType = model.trackType, textIndexTrack = model.textIndexTrack, textIndexingConf = model.textIndexingConf;
-    var _c = __read((0, react_1.useState)(), 2), trackErrorMessage = _c[0], setTrackErrorMessage = _c[1];
-    function getStepContent(step) {
-        switch (step) {
-            case 0:
-                return react_1.default.createElement(TrackSourceSelect_1.default, { model: model });
-            case 1:
-                return react_1.default.createElement(ConfirmTrack_1.default, { model: model });
-            default:
-                return react_1.default.createElement(material_1.Typography, null, "Unknown step");
-        }
-    }
-    function handleNext() {
-        return __awaiter(this, void 0, void 0, function () {
-            var trackId, assemblyInstance, textSearchingDefault, attr, indexName, indexingParams, newEntry;
-            return __generator(this, function (_a) {
-                if (activeStep !== steps.length - 1) {
-                    setActiveStep(activeStep + 1);
-                    return [2 /*return*/];
-                }
-                trackId = "".concat(trackName
-                    .toLowerCase()
-                    .replace(/ /g, '_'), "-").concat(Date.now()).concat(session.adminMode ? '' : '-sessionTrack');
-                assemblyInstance = session.assemblyManager.get(assembly);
-                if (trackAdapter && trackAdapter.type !== 'UNKNOWN') {
-                    // @ts-ignore
-                    session.addTrackConf({
-                        trackId: trackId,
-                        type: trackType,
-                        name: trackName,
-                        assemblyNames: [assembly],
-                        adapter: __assign(__assign({}, trackAdapter), { sequenceAdapter: (0, configuration_1.getConf)(assemblyInstance, ['sequence', 'adapter']) }),
-                    });
-                    textSearchingDefault = {
-                        attributes: ['Name', 'ID'],
-                        exclude: ['CDS', 'exon'],
-                    };
-                    if (model.view) {
-                        model.view.showTrack(trackId);
-                        if (util_1.isElectron) {
-                            if (textIndexTrack && (0, util_1.supportedIndexingAdapters)(trackAdapter.type)) {
-                                attr = textIndexingConf || textSearchingDefault;
-                                indexName = trackName + '-index';
-                                indexingParams = __assign(__assign({}, attr), { assemblies: [assembly], tracks: [trackId], indexType: 'perTrack', name: indexName, timestamp: new Date().toISOString() });
-                                newEntry = {
-                                    indexingParams: indexingParams,
-                                    name: indexName,
-                                    cancelCallback: function () {
-                                        jobsManager.abortJob();
-                                    },
-                                };
-                                jobsManager.queueJob(newEntry);
-                            }
-                        }
-                    }
-                    else {
-                        session.notify('Open a new view, or use the track selector in an existing view, to view this track', 'info');
-                    }
-                    model.clearData();
-                    // @ts-ignore
-                    session.hideWidget(model);
-                }
-                else {
-                    setTrackErrorMessage('Failed to add track.\nThe configuration of this file is not currently supported.');
-                }
-                return [2 /*return*/];
-            });
-        });
-    }
-    function handleBack() {
-        setTrackErrorMessage(undefined);
-        setActiveStep(activeStep - 1);
-    }
-    function isNextDisabled() {
-        switch (activeStep) {
-            case 0:
-                return !trackData;
-            case 1:
-                return !(trackName && trackType && (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) && assembly);
-            default:
-                return true;
-        }
-    }
-    return (react_1.default.createElement("div", { className: classes.root },
-        react_1.default.createElement(material_1.Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical" }, steps.map(function (label, idx) { return (react_1.default.createElement(material_1.Step, { key: label },
-            react_1.default.createElement(material_1.StepLabel, null, label),
-            react_1.default.createElement(material_1.StepContent, null,
-                getStepContent(idx),
-                react_1.default.createElement("div", { className: classes.actionsContainer },
-                    react_1.default.createElement(material_1.Button, { disabled: activeStep === 0, onClick: handleBack, className: classes.button }, "Back"),
-                    react_1.default.createElement(material_1.Button, { disabled: isNextDisabled(), variant: "contained", color: "primary", onClick: handleNext, className: classes.button, "data-testid": "addTrackNextButton" }, activeStep === steps.length - 1 ? 'Add' : 'Next')),
-                trackErrorMessage ? (react_1.default.createElement("div", { className: classes.alertContainer },
-                    react_1.default.createElement(material_1.Alert, { severity: "error" }, trackErrorMessage))) : null))); }))));
+    var _b = __read((0, util_1.useLocalStorage)('trackSelector-choice', 'Default'), 2), val = _b[0], setVal = _b[1];
+    var pluginManager = (0, mobx_state_tree_1.getEnv)(model).pluginManager;
+    var widgets = pluginManager.getElementTypesInGroup('add track workflow');
+    var ComponentMap = __assign({ Default: DefaultAddTrackWorkflow_1.default }, Object.fromEntries(widgets.map(function (w) { return [w.name, w.ReactComponent]; })));
+    // make sure the selected value is in the list
+    var val2 = ComponentMap[val] ? val : 'Default';
+    var Component = ComponentMap[val2];
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        react_1.default.createElement(material_1.FormControl, null,
+            react_1.default.createElement(material_1.Select, { value: val2, onChange: function (event) { return setVal(event.target.value); } }, Object.keys(ComponentMap).map(function (e) { return (react_1.default.createElement(material_1.MenuItem, { key: e, value: e }, e)); })),
+            react_1.default.createElement(material_1.FormHelperText, null, "Type of add track workflow")),
+        react_1.default.createElement("br", null),
+        react_1.default.createElement(Component, { model: model })));
 }
-exports.default = (0, mobx_react_1.observer)(AddTrackWidget);
+exports.default = (0, mobx_react_1.observer)(AddTrackSelector);
 //# sourceMappingURL=AddTrackWidget.js.map

package/dist/AddTrackWidget/components/AddTrackWidget.js.map

@@ -1 +1 @@
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+{"version":3,"file":"AddTrackWidget.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/AddTrackWidget.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,gDAAyB;AACzB,yCAAqC;AACrC,0CAA6E;AAE7E,2CAAoD;AACpD,mDAAwC;AAIxC,sFAA+D;AAE/D,SAAS,gBAAgB,CAAC,EAAmC;QAAjC,KAAK,WAAA;IACzB,IAAA,KAAA,OAAgB,IAAA,sBAAe,EAAC,sBAAsB,EAAE,SAAS,CAAC,IAAA,EAAjE,GAAG,QAAA,EAAE,MAAM,QAAsD,CAAA;IAChE,IAAA,aAAa,GAAK,IAAA,wBAAM,EAAC,KAAK,CAAC,cAAlB,CAAkB;IACvC,IAAM,OAAO,GAAG,aAAa,CAAC,sBAAsB,CAClD,oBAAoB,CACK,CAAA;IAC3B,IAAM,YAAY,GAAG,WACnB,OAAO,EAAE,iCAAuB,IAC7B,MAAM,CAAC,WAAW,CAAC,OAAO,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,cAAc,CAAC,EAA1B,CAA0B,CAAC,CAAC,CACX,CAAA;IAE1D,8CAA8C;IAC9C,IAAM,IAAI,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAA;IAChD,IAAM,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;IACpC,OAAO,CACL;QACE,8BAAC,sBAAW;YACV,8BAAC,iBAAM,IAAC,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,UAAA,KAAK,IAAI,OAAA,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAA1B,CAA0B,IAC/D,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAClC,8BAAC,mBAAQ,IAAC,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,IACvB,CAAC,CACO,CACZ,EAJmC,CAInC,CAAC,CACK;YACT,8BAAC,yBAAc,qCAA4C,CAC/C;QAEd,yCAAM;QACN,8BAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAC1B,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,gBAAgB,CAAC,CAAA"}

package/dist/AddTrackWidget/components/ConfirmTrack.js

@@ -188,13 +188,10 @@ var TextIndexingConfig = (0, mobx_react_1.observer)(function (_a) {
 var TrackAdapterSelector = (0, mobx_react_1.observer)(function (_a) {
     var model = _a.model;
     var classes = useStyles().classes;
-    var session = (0, util_1.getSession)(model);
     var trackAdapter = model.trackAdapter;
-    // prettier-ignore
-    var adapters = getAdapterTypes((0, mobx_state_tree_1.getEnv)(session).pluginManager);
-    return (react_1.default.createElement(material_1.TextField, { className: classes.spacing, value: (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) !== 'UNKNOWN' ? trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type : '', label: "adapterType", helperText: "Select an adapter type", select: true, fullWidth: true, onChange: function (event) {
-            model.setAdapterHint(event.target.value);
-        }, SelectProps: {
+    var pluginManager = (0, mobx_state_tree_1.getEnv)(model).pluginManager;
+    var adapters = getAdapterTypes(pluginManager);
+    return (react_1.default.createElement(material_1.TextField, { className: classes.spacing, value: (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) !== 'UNKNOWN' ? trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type : '', label: "adapterType", helperText: "Select an adapter type", select: true, fullWidth: true, onChange: function (event) { return model.setAdapterHint(event.target.value); }, SelectProps: {
             // @ts-ignore
             SelectDisplayProps: { 'data-testid': 'adapterTypeSelect' },
         } },
@@ -211,6 +208,8 @@ var TrackAdapterSelector = (0, mobx_react_1.observer)(function (_a) {
                 ? (_b = elt.adapterMetadata) === null || _b === void 0 ? void 0 : _b.displayName
                 : elt.name));
         }),
+        // adapters with the 'adapterMetadata.category' property are categorized
+        // by the value of the property here
         categorizeAdapters(adapters.filter(function (elt) { var _a; return !((_a = elt.adapterMetadata) === null || _a === void 0 ? void 0 : _a.hiddenFromGUI); }))));
 });
 function UnknownAdapterPrompt(_a) {

package/dist/AddTrackWidget/components/ConfirmTrack.js.map

@@ -1 +1 @@
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package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts

@@ -0,0 +1,7 @@
+/// <reference types="react" />
+import { AddTrackModel } from '../model';
+declare function AddTrackWorkflow({ model }: {
+    model: AddTrackModel;
+}): JSX.Element;
+declare const _default: typeof AddTrackWorkflow;
+export default _default;

package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js

@@ -0,0 +1,222 @@
+"use strict";
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importStar(require("react"));
+var material_1 = require("@mui/material");
+var mui_1 = require("tss-react/mui");
+var util_1 = require("@jbrowse/core/util");
+var configuration_1 = require("@jbrowse/core/configuration");
+var mobx_react_1 = require("mobx-react");
+var mobx_state_tree_1 = require("mobx-state-tree");
+// locals
+var ConfirmTrack_1 = __importDefault(require("./ConfirmTrack"));
+var TrackSourceSelect_1 = __importDefault(require("./TrackSourceSelect"));
+var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+    root: {
+        marginTop: theme.spacing(1),
+    },
+    stepper: {
+        backgroundColor: theme.palette.background.default,
+    },
+    button: {
+        marginTop: theme.spacing(1),
+        marginRight: theme.spacing(1),
+    },
+    actionsContainer: {
+        marginBottom: theme.spacing(2),
+    },
+    stepContent: {
+        margin: theme.spacing(1),
+    },
+    alertContainer: {
+        padding: "".concat(theme.spacing(2), "px 0px ").concat(theme.spacing(2), "px 0px"),
+    },
+}); });
+var steps = ['Enter track data', 'Confirm track type'];
+function AddTrackWorkflow(_a) {
+    var model = _a.model;
+    var _b = __read((0, react_1.useState)(0), 2), activeStep = _b[0], setActiveStep = _b[1];
+    var classes = useStyles().classes;
+    var pluginManager = (0, mobx_state_tree_1.getEnv)(model).pluginManager;
+    var rootModel = pluginManager.rootModel;
+    var jobsManager = rootModel.jobsManager;
+    var session = (0, util_1.getSession)(model);
+    var assembly = model.assembly, trackAdapter = model.trackAdapter, trackData = model.trackData, trackName = model.trackName, trackType = model.trackType, textIndexTrack = model.textIndexTrack, textIndexingConf = model.textIndexingConf;
+    var _c = __read((0, react_1.useState)(), 2), trackErrorMessage = _c[0], setTrackErrorMessage = _c[1];
+    function getStepContent(step) {
+        switch (step) {
+            case 0:
+                return react_1.default.createElement(TrackSourceSelect_1.default, { model: model });
+            case 1:
+                return react_1.default.createElement(ConfirmTrack_1.default, { model: model });
+            default:
+                return react_1.default.createElement(material_1.Typography, null, "Unknown step");
+        }
+    }
+    function handleNext() {
+        return __awaiter(this, void 0, void 0, function () {
+            var trackId, assemblyInstance, attr, indexName, newEntry;
+            return __generator(this, function (_a) {
+                if (activeStep !== steps.length - 1) {
+                    setActiveStep(activeStep + 1);
+                    return [2 /*return*/];
+                }
+                trackId = [
+                    "".concat(trackName.toLowerCase().replace(/ /g, '_'), "-").concat(Date.now()),
+                    "".concat(session.adminMode ? '' : '-sessionTrack'),
+                ].join('');
+                assemblyInstance = session.assemblyManager.get(assembly);
+                if (trackAdapter && trackAdapter.type !== 'UNKNOWN') {
+                    session.addTrackConf({
+                        trackId: trackId,
+                        type: trackType,
+                        name: trackName,
+                        assemblyNames: [assembly],
+                        adapter: __assign(__assign({}, trackAdapter), { sequenceAdapter: (0, configuration_1.getConf)(assemblyInstance, ['sequence', 'adapter']) }),
+                    });
+                    if (model.view) {
+                        model.view.showTrack(trackId);
+                        if (util_1.isElectron &&
+                            textIndexTrack &&
+                            (0, util_1.supportedIndexingAdapters)(trackAdapter.type)) {
+                            attr = textIndexingConf || {
+                                attributes: ['Name', 'ID'],
+                                exclude: ['CDS', 'exon'],
+                            };
+                            indexName = trackName + '-index';
+                            newEntry = {
+                                indexingParams: __assign(__assign({}, attr), { assemblies: [assembly], tracks: [trackId], indexType: 'perTrack', name: indexName, timestamp: new Date().toISOString() }),
+                                name: indexName,
+                                cancelCallback: function () { return jobsManager.abortJob(); },
+                            };
+                            jobsManager.queueJob(newEntry);
+                        }
+                    }
+                    else {
+                        session.notify('Open a new view, or use the track selector in an existing view, to view this track', 'info');
+                    }
+                    model.clearData();
+                    session.hideWidget(model);
+                }
+                else {
+                    setTrackErrorMessage('Failed to add track.\nThe configuration of this file is not currently supported.');
+                }
+                return [2 /*return*/];
+            });
+        });
+    }
+    function handleBack() {
+        setTrackErrorMessage(undefined);
+        setActiveStep(activeStep - 1);
+    }
+    function isNextDisabled() {
+        switch (activeStep) {
+            case 0:
+                return !trackData;
+            case 1:
+                return !(trackName && trackType && (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) && assembly);
+            default:
+                return true;
+        }
+    }
+    return (react_1.default.createElement("div", { className: classes.root },
+        react_1.default.createElement(material_1.Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical" }, steps.map(function (label, idx) { return (react_1.default.createElement(material_1.Step, { key: label },
+            react_1.default.createElement(material_1.StepLabel, null, label),
+            react_1.default.createElement(material_1.StepContent, null,
+                getStepContent(idx),
+                react_1.default.createElement("div", { className: classes.actionsContainer },
+                    react_1.default.createElement(material_1.Button, { disabled: activeStep === 0, onClick: handleBack, className: classes.button }, "Back"),
+                    react_1.default.createElement(material_1.Button, { disabled: isNextDisabled(), variant: "contained", color: "primary", onClick: handleNext, className: classes.button, "data-testid": "addTrackNextButton" }, activeStep === steps.length - 1 ? 'Add' : 'Next')),
+                trackErrorMessage ? (react_1.default.createElement("div", { className: classes.alertContainer },
+                    react_1.default.createElement(material_1.Alert, { severity: "error" }, trackErrorMessage))) : null))); }))));
+}
+exports.default = (0, mobx_react_1.observer)(AddTrackWorkflow);
+//# sourceMappingURL=DefaultAddTrackWorkflow.js.map

package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map

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package/dist/HierarchicalTrackSelectorWidget/components/Header.d.ts

@@ -0,0 +1,10 @@
+/// <reference types="react" />
+import { HierarchicalTrackSelectorModel } from '../model';
+declare function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyIdx, assemblyIdx, }: {
+    model: HierarchicalTrackSelectorModel;
+    setHeaderHeight: (n: number) => void;
+    setAssemblyIdx: (n: number) => void;
+    assemblyIdx: number;
+}): JSX.Element;
+declare const _default: typeof HierarchicalTrackSelectorHeader;
+export default _default;