@jbrowse/plugin-data-management 1.7.0 → 1.7.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (97) hide show
  1. package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts +9 -9
  2. package/dist/AddConnectionWidget/components/AddConnectionWidget.js +17 -17
  3. package/dist/AddConnectionWidget/components/AddConnectionWidget.test.js +7 -7
  4. package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts +2 -2
  5. package/dist/AddConnectionWidget/components/ConfigureConnection.js +6 -6
  6. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +8 -8
  7. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +8 -8
  8. package/dist/AddConnectionWidget/index.d.ts +2 -2
  9. package/dist/AddConnectionWidget/index.js +1 -1
  10. package/dist/AddConnectionWidget/model.d.ts +5 -5
  11. package/dist/AddConnectionWidget/model.js +2 -2
  12. package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +7 -7
  13. package/dist/AddTrackWidget/components/AddTrackWidget.js +20 -20
  14. package/dist/AddTrackWidget/components/AddTrackWidget.test.js +7 -7
  15. package/dist/AddTrackWidget/components/ConfirmTrack.d.ts +7 -7
  16. package/dist/AddTrackWidget/components/ConfirmTrack.js +28 -28
  17. package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts +7 -7
  18. package/dist/AddTrackWidget/components/TrackSourceSelect.js +6 -6
  19. package/dist/AddTrackWidget/index.d.ts +2 -2
  20. package/dist/AddTrackWidget/index.js +1 -1
  21. package/dist/AddTrackWidget/index.test.js +13 -13
  22. package/dist/AddTrackWidget/model.d.ts +42 -42
  23. package/dist/AddTrackWidget/model.js +2 -2
  24. package/dist/AssemblyManager/AssemblyAddForm.d.ts +6 -6
  25. package/dist/AssemblyManager/AssemblyAddForm.js +36 -36
  26. package/dist/AssemblyManager/AssemblyEditor.d.ts +5 -5
  27. package/dist/AssemblyManager/AssemblyEditor.js +3 -3
  28. package/dist/AssemblyManager/AssemblyManager.d.ts +6 -6
  29. package/dist/AssemblyManager/AssemblyManager.js +18 -18
  30. package/dist/AssemblyManager/AssemblyManager.test.js +6 -6
  31. package/dist/AssemblyManager/AssemblyTable.d.ts +13 -13
  32. package/dist/AssemblyManager/AssemblyTable.js +15 -15
  33. package/dist/AssemblyManager/index.d.ts +1 -1
  34. package/dist/AssemblyManager/index.js +1 -1
  35. package/dist/HierarchicalTrackSelectorWidget/components/CloseConnectionDialog.d.ts +7 -7
  36. package/dist/HierarchicalTrackSelectorWidget/components/CloseConnectionDialog.js +8 -8
  37. package/dist/HierarchicalTrackSelectorWidget/components/DeleteConnectionDialog.d.ts +13 -13
  38. package/dist/HierarchicalTrackSelectorWidget/components/DeleteConnectionDialog.js +5 -5
  39. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +6 -6
  40. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +58 -58
  41. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.js +10 -10
  42. package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.d.ts +9 -9
  43. package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js +11 -11
  44. package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.d.ts +10 -10
  45. package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js +9 -9
  46. package/dist/HierarchicalTrackSelectorWidget/index.d.ts +2 -2
  47. package/dist/HierarchicalTrackSelectorWidget/index.js +1 -1
  48. package/dist/HierarchicalTrackSelectorWidget/model.d.ts +37 -37
  49. package/dist/HierarchicalTrackSelectorWidget/model.js +8 -8
  50. package/dist/PluginStoreWidget/components/CustomPluginForm.d.ts +9 -9
  51. package/dist/PluginStoreWidget/components/CustomPluginForm.js +24 -24
  52. package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts +11 -11
  53. package/dist/PluginStoreWidget/components/InstalledPlugin.js +14 -14
  54. package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts +9 -9
  55. package/dist/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
  56. package/dist/PluginStoreWidget/components/PluginCard.d.ts +10 -10
  57. package/dist/PluginStoreWidget/components/PluginCard.js +13 -13
  58. package/dist/PluginStoreWidget/components/PluginStoreWidget.d.ts +7 -7
  59. package/dist/PluginStoreWidget/components/PluginStoreWidget.js +31 -31
  60. package/dist/PluginStoreWidget/components/PluginStoreWidget.test.js +13 -13
  61. package/dist/PluginStoreWidget/index.d.ts +3 -3
  62. package/dist/PluginStoreWidget/index.js +2 -2
  63. package/dist/PluginStoreWidget/model.d.ts +13 -13
  64. package/dist/PluginStoreWidget/model.js +1 -1
  65. package/dist/SetDefaultSession/SetDefaultSession.d.ts +6 -6
  66. package/dist/SetDefaultSession/SetDefaultSession.js +7 -7
  67. package/dist/SetDefaultSession/SetDefaultSession.test.js +3 -3
  68. package/dist/SetDefaultSession/index.d.ts +1 -1
  69. package/dist/SetDefaultSession/index.js +1 -1
  70. package/dist/index.d.ts +27 -27
  71. package/dist/index.js +15 -15
  72. package/dist/index.test.js +2 -2
  73. package/dist/ucsc-trackhub/configSchema.d.ts +2 -2
  74. package/dist/ucsc-trackhub/configSchema.js +2 -2
  75. package/dist/ucsc-trackhub/index.d.ts +2 -2
  76. package/dist/ucsc-trackhub/index.js +2 -2
  77. package/dist/ucsc-trackhub/model.d.ts +15 -4
  78. package/dist/ucsc-trackhub/model.js +7 -7
  79. package/dist/ucsc-trackhub/ucscAssemblies.d.ts +2 -2
  80. package/dist/ucsc-trackhub/ucscAssemblies.js +2 -2
  81. package/dist/ucsc-trackhub/ucscTrackHub.d.ts +6 -6
  82. package/dist/ucsc-trackhub/ucscTrackHub.js +9 -9
  83. package/package.json +5 -4
  84. package/dist/AddConnectionWidget/components/AddConnectionWidget.test.d.ts +0 -1
  85. package/dist/AddTrackWidget/components/AddTrackWidget.test.d.ts +0 -1
  86. package/dist/AddTrackWidget/index.test.d.ts +0 -1
  87. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.d.ts +0 -1
  88. package/dist/HierarchicalTrackSelectorWidget/model.test.d.ts +0 -1
  89. package/dist/PluginStoreWidget/components/PluginStoreWidget.test.d.ts +0 -1
  90. package/dist/PluginStoreWidget/model.test.d.ts +0 -1
  91. package/dist/index.test.d.ts +0 -1
  92. package/dist/plugin-data-management.cjs.development.js +0 -4856
  93. package/dist/plugin-data-management.cjs.development.js.map +0 -1
  94. package/dist/plugin-data-management.cjs.production.min.js +0 -2
  95. package/dist/plugin-data-management.cjs.production.min.js.map +0 -1
  96. package/dist/plugin-data-management.esm.js +0 -4829
  97. package/dist/plugin-data-management.esm.js.map +0 -1
package/dist/index.js CHANGED
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = exports.SetDefaultSession = exports.AssemblyManager = void 0;
8
+ exports.default = exports.SetDefaultSession = exports.AssemblyManager = void 0;
9
9
 
10
10
  var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
11
11
 
@@ -41,13 +41,13 @@ var _HierarchicalTrackSelectorWidget = require("./HierarchicalTrackSelectorWidge
41
41
 
42
42
  var _PluginStoreWidget = require("./PluginStoreWidget");
43
43
 
44
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
44
+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
45
45
 
46
46
  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
47
47
 
48
48
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
49
49
 
50
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2["default"])(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
50
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2.default)(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
51
51
 
52
52
  var SetDefaultSession = /*#__PURE__*/(0, _react.lazy)(function () {
53
53
  return Promise.resolve().then(function () {
@@ -63,33 +63,33 @@ var AssemblyManager = /*#__PURE__*/(0, _react.lazy)(function () {
63
63
  exports.AssemblyManager = AssemblyManager;
64
64
 
65
65
  var _default = /*#__PURE__*/function (_Plugin) {
66
- (0, _inherits2["default"])(_default, _Plugin);
66
+ (0, _inherits2.default)(_default, _Plugin);
67
67
 
68
68
  var _super = _createSuper(_default);
69
69
 
70
70
  function _default() {
71
71
  var _this;
72
72
 
73
- (0, _classCallCheck2["default"])(this, _default);
73
+ (0, _classCallCheck2.default)(this, _default);
74
74
 
75
75
  for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
76
76
  args[_key] = arguments[_key];
77
77
  }
78
78
 
79
79
  _this = _super.call.apply(_super, [this].concat(args));
80
- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "name", 'DataManagementPlugin');
81
- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "exports", {
80
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'DataManagementPlugin');
81
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "exports", {
82
82
  AssemblyManager: AssemblyManager,
83
83
  SetDefaultSession: SetDefaultSession
84
84
  });
85
85
  return _this;
86
86
  }
87
87
 
88
- (0, _createClass2["default"])(_default, [{
88
+ (0, _createClass2.default)(_default, [{
89
89
  key: "install",
90
90
  value: function install(pluginManager) {
91
91
  pluginManager.addConnectionType(function () {
92
- return new _ConnectionType["default"]({
92
+ return new _ConnectionType.default({
93
93
  name: 'UCSCTrackHubConnection',
94
94
  configSchema: _ucscTrackhub.configSchema,
95
95
  stateModel: (0, _ucscTrackhub.modelFactory)(pluginManager),
@@ -99,7 +99,7 @@ var _default = /*#__PURE__*/function (_Plugin) {
99
99
  });
100
100
  });
101
101
  pluginManager.addWidgetType(function () {
102
- return new _WidgetType["default"]({
102
+ return new _WidgetType.default({
103
103
  name: 'HierarchicalTrackSelectorWidget',
104
104
  heading: 'Available tracks',
105
105
  configSchema: _HierarchicalTrackSelectorWidget.configSchema,
@@ -112,7 +112,7 @@ var _default = /*#__PURE__*/function (_Plugin) {
112
112
  });
113
113
  });
114
114
  pluginManager.addWidgetType(function () {
115
- return new _WidgetType["default"]({
115
+ return new _WidgetType.default({
116
116
  name: 'AddTrackWidget',
117
117
  heading: 'Add a track',
118
118
  configSchema: _AddTrackWidget.configSchema,
@@ -125,7 +125,7 @@ var _default = /*#__PURE__*/function (_Plugin) {
125
125
  });
126
126
  });
127
127
  pluginManager.addWidgetType(function () {
128
- return new _WidgetType["default"]({
128
+ return new _WidgetType.default({
129
129
  name: 'AddConnectionWidget',
130
130
  heading: 'Add a connection',
131
131
  configSchema: _AddConnectionWidget.configSchema,
@@ -138,7 +138,7 @@ var _default = /*#__PURE__*/function (_Plugin) {
138
138
  });
139
139
  });
140
140
  pluginManager.addWidgetType(function () {
141
- return new _WidgetType["default"]({
141
+ return new _WidgetType.default({
142
142
  name: 'PluginStoreWidget',
143
143
  heading: 'Plugin store',
144
144
  configSchema: _PluginStoreWidget.configSchema,
@@ -156,6 +156,6 @@ var _default = /*#__PURE__*/function (_Plugin) {
156
156
  value: function configure(pluginManager) {}
157
157
  }]);
158
158
  return _default;
159
- }(_Plugin2["default"]);
159
+ }(_Plugin2.default);
160
160
 
161
- exports["default"] = _default;
161
+ exports.default = _default;
@@ -15,14 +15,14 @@ describe('Data management', function () {
15
15
  beforeAll(function () {
16
16
  var originalConsoleWarn = console.warn;
17
17
  console.warn = jest.fn();
18
- pluginManager = new _PluginManager["default"]([new _["default"](), new _pluginConfig["default"]()]);
18
+ pluginManager = new _PluginManager.default([new _.default(), new _pluginConfig.default()]);
19
19
  pluginManager.createPluggableElements();
20
20
  pluginManager.configure();
21
21
  console.warn = originalConsoleWarn;
22
22
  });
23
23
  it("won't add if already added", function () {
24
24
  expect(function () {
25
- return pluginManager.addPlugin(new _["default"]());
25
+ return pluginManager.addPlugin(new _.default());
26
26
  }).toThrow(/JBrowse already configured, cannot add plugins/);
27
27
  });
28
28
  it('adds track add widget', function () {
@@ -1,2 +1,2 @@
1
- declare var _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
- export default _default;
1
+ declare var _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
+ export default _default;
@@ -3,7 +3,7 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports["default"] = void 0;
6
+ exports.default = void 0;
7
7
 
8
8
  var _models = require("@jbrowse/core/pluggableElementTypes/models");
9
9
 
@@ -27,4 +27,4 @@ var _default = (0, _configuration.ConfigurationSchema)('UCSCTrackHubConnection',
27
27
  baseConfiguration: _models.baseConnectionConfig
28
28
  });
29
29
 
30
- exports["default"] = _default;
30
+ exports.default = _default;
@@ -1,2 +1,2 @@
1
- export { default as modelFactory } from "./model";
2
- export { default as configSchema } from "./configSchema";
1
+ export { default as modelFactory } from "./model";
2
+ export { default as configSchema } from "./configSchema";
@@ -8,13 +8,13 @@ Object.defineProperty(exports, "__esModule", {
8
8
  Object.defineProperty(exports, "configSchema", {
9
9
  enumerable: true,
10
10
  get: function get() {
11
- return _configSchema["default"];
11
+ return _configSchema.default;
12
12
  }
13
13
  });
14
14
  Object.defineProperty(exports, "modelFactory", {
15
15
  enumerable: true,
16
16
  get: function get() {
17
- return _model["default"];
17
+ return _model.default;
18
18
  }
19
19
  });
20
20
 
@@ -1,4 +1,15 @@
1
- export default function UCSCTrackHubConnection(pluginManager: any): import("mobx-state-tree").IModelType<import("mobx-state-tree").ModelProperties & {
2
- configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
3
- type: import("mobx-state-tree").ISimpleType<"UCSCTrackHubConnection">;
4
- }, any, any, any>;
1
+ export default function UCSCTrackHubConnection(pluginManager: any): import("mobx-state-tree").IModelType<{
2
+ name: import("mobx-state-tree").ISimpleType<string>;
3
+ tracks: import("mobx-state-tree").IArrayType<any>;
4
+ } & {
5
+ configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
6
+ type: import("mobx-state-tree").ISimpleType<"UCSCTrackHubConnection">;
7
+ }, {
8
+ afterAttach(): void;
9
+ addTrackConf(trackConf: any): any;
10
+ addTrackConfs(trackConfs: any): any[];
11
+ setTrackConfs(trackConfs: any): import("mobx-state-tree").IMSTArray<any> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<any>>;
12
+ clear(): void;
13
+ } & {
14
+ connect(): void;
15
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = UCSCTrackHubConnection;
8
+ exports.default = UCSCTrackHubConnection;
9
9
 
10
10
  var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
11
11
 
@@ -21,7 +21,7 @@ var _configSchema = _interopRequireDefault(require("./configSchema"));
21
21
 
22
22
  var _ucscTrackHub = require("./ucscTrackHub");
23
23
 
24
- function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
24
+ function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
25
25
 
26
26
  function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
27
27
 
@@ -29,7 +29,7 @@ function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len
29
29
 
30
30
  function UCSCTrackHubConnection(pluginManager) {
31
31
  return _mobxStateTree.types.compose('UCSCTrackHubConnection', (0, _models.BaseConnectionModelFactory)(pluginManager), _mobxStateTree.types.model({
32
- configuration: (0, _configuration.ConfigurationReference)(_configSchema["default"]),
32
+ configuration: (0, _configuration.ConfigurationReference)(_configSchema.default),
33
33
  type: _mobxStateTree.types.literal('UCSCTrackHubConnection')
34
34
  }).actions(function (self) {
35
35
  return {
@@ -47,7 +47,7 @@ function UCSCTrackHubConnection(pluginManager) {
47
47
  };
48
48
  return Promise.all([hubFile, (0, _ucscTrackHub.fetchGenomesFile)(genomesFileLocation)]);
49
49
  }).then(function (_ref) {
50
- var _ref2 = (0, _slicedToArray2["default"])(_ref, 2),
50
+ var _ref2 = (0, _slicedToArray2.default)(_ref, 2),
51
51
  hubFile = _ref2[0],
52
52
  genomesFile = _ref2[1];
53
53
 
@@ -58,7 +58,7 @@ function UCSCTrackHubConnection(pluginManager) {
58
58
 
59
59
  try {
60
60
  var _loop = function _loop() {
61
- var _step$value = (0, _slicedToArray2["default"])(_step.value, 2),
61
+ var _step$value = (0, _slicedToArray2.default)(_step.value, 2),
62
62
  genomeName = _step$value[0],
63
63
  genome = _step$value[1];
64
64
 
@@ -104,7 +104,7 @@ function UCSCTrackHubConnection(pluginManager) {
104
104
 
105
105
  try {
106
106
  for (_iterator2.s(); !(_step2 = _iterator2.n()).done;) {
107
- var _step2$value = (0, _slicedToArray2["default"])(_step2.value, 4),
107
+ var _step2$value = (0, _slicedToArray2.default)(_step2.value, 4),
108
108
  trackDbFileLocation = _step2$value[0],
109
109
  trackDbFile = _step2$value[1],
110
110
  genomeName = _step2$value[2],
@@ -119,7 +119,7 @@ function UCSCTrackHubConnection(pluginManager) {
119
119
  } finally {
120
120
  _iterator2.f();
121
121
  }
122
- })["catch"](function (error) {
122
+ }).catch(function (error) {
123
123
  console.error(error);
124
124
  session.notify("There was a problem connecting to the UCSC Track Hub \"".concat(self.name, "\". Please make sure you have entered a valid hub.txt file. The error that was thrown is: \"").concat(error, "\""), 'error');
125
125
  session.breakConnection(self.configuration);
@@ -1,2 +1,2 @@
1
- declare var _default: string[];
2
- export default _default;
1
+ declare var _default: string[];
2
+ export default _default;
@@ -3,11 +3,11 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports["default"] = void 0;
6
+ exports.default = void 0;
7
7
 
8
8
  // These are the assemblies for which there is a sequence file located at
9
9
  // http://hgdownload.soe.ucsc.edu/goldenPath/${assemblyName}/bigZips/${assemblyName}.2bit
10
10
  // This list was generated by `getUcscAssemblies.js`
11
11
  var _default = "ailMel1\nallMis1\nanoCar1\nanoCar2\nanoGam1\nanoGam3\napiMel1\napiMel2\naplCal1\naptMan1\naquChr2\nbalAcu1\nbisBis1\nbosTau2\nbosTau3\nbosTau4\nbosTau6\nbosTau7\nbosTau8\nbraFlo1\ncaeJap1\ncaePb1\ncaePb2\ncaeRem2\ncaeRem3\ncalJac1\ncalJac3\ncalMil1\ncanFam1\ncanFam3\ncavPor3\ncb3\nce10\nce11\nce2\nce4\nce6\ncerSim1\nchlSab2\nchoHof1\nchrPic1\nci1\nci2\nci3\ncriGri1\ncriGriChoV1\ndanRer10\ndanRer11\ndanRer3\ndanRer4\ndanRer5\ndanRer6\ndanRer7\ndasNov3\ndipOrd1\ndm1\ndm2\ndm3\ndm6\ndp2\ndp3\ndroAna1\ndroAna2\ndroEre1\ndroGri1\ndroMoj1\ndroMoj2\ndroPer1\ndroSec1\ndroSim1\ndroVir1\ndroVir2\ndroYak1\ndroYak2\neboVir3\nechTel1\nechTel2\nequCab1\nequCab2\neriEur1\neriEur2\nfelCat3\nfelCat4\nfelCat5\nfelCat8\nfr1\nfr2\nfr3\ngadMor1\ngalGal2\ngalGal3\ngalGal4\ngalGal5\ngalGal6\ngalVar1\ngasAcu1\ngeoFor1\ngorGor3\ngorGor4\ngorGor5\nhetGla1\nhetGla2\nhg16\nhg18\nhg19\nhg38\nlatCha1\nloxAfr3\nmacEug2\nmacFas5\nmanPen1\nmelGal1\nmelGal5\nmelUnd1\nmicMur1\nmicMur2\nmm10\nmm7\nmm8\nmm9\nmonDom2\nmonDom4\nmonDom5\nmusFur1\nmyoLuc2\nnanPar1\nnasLar1\nnomLeu1\nnomLeu2\nnomLeu3\nochPri2\nochPri3\noreNil2\nornAna1\nornAna2\noryCun2\noryLat2\notoGar3\noviAri1\noviAri3\noviAri4\npanPan1\npanPan2\npanTro1\npanTro2\npanTro3\npanTro4\npanTro5\npanTro6\npapAnu2\npapHam1\npetMar1\npetMar2\nponAbe2\nponAbe3\npriPac1\nproCap1\npteVam1\nrheMac2\nrheMac3\nrheMac8\nrhiRox1\nrn4\nrn5\nrn6\nsacCer1\nsacCer2\nsacCer3\nsaiBol1\nsarHar1\nsorAra1\nsorAra2\nspeTri2\nstrPur1\nstrPur2\nsusScr11\nsusScr2\nsusScr3\ntaeGut1\ntaeGut2\ntarSyr1\ntarSyr2\ntetNig1\ntetNig2\nthaSir1\ntriMan1\ntupBel1\nturTru2\nventer1\nvicPac1\nvicPac2\nxenLae2\nxenTro1\nxenTro2\nxenTro3\nxenTro7\nxenTro9".split(/\r?\n/);
12
12
 
13
- exports["default"] = _default;
13
+ exports.default = _default;
@@ -1,6 +1,6 @@
1
- export function fetchHubFile(hubFileLocation: any): Promise<any>;
2
- export function fetchGenomesFile(genomesFileLocation: any): Promise<any>;
3
- export function fetchTrackDbFile(trackDbFileLocation: any): Promise<any>;
4
- export function generateTracks(trackDb: any, trackDbFileLocation: any, assemblyName: any, sequenceAdapter: any): any[];
5
- export { ucscAssemblies };
6
- import ucscAssemblies from "./ucscAssemblies";
1
+ export function fetchHubFile(hubFileLocation: any): Promise<any>;
2
+ export function fetchGenomesFile(genomesFileLocation: any): Promise<any>;
3
+ export function fetchTrackDbFile(trackDbFileLocation: any): Promise<any>;
4
+ export function generateTracks(trackDb: any, trackDbFileLocation: any, assemblyName: any, sequenceAdapter: any): any[];
5
+ export { ucscAssemblies };
6
+ import ucscAssemblies from "./ucscAssemblies";
@@ -14,7 +14,7 @@ exports.generateTracks = generateTracks;
14
14
  Object.defineProperty(exports, "ucscAssemblies", {
15
15
  enumerable: true,
16
16
  get: function get() {
17
- return _ucscAssemblies["default"];
17
+ return _ucscAssemblies.default;
18
18
  }
19
19
  });
20
20
 
@@ -34,17 +34,17 @@ var _ucscAssemblies = _interopRequireDefault(require("./ucscAssemblies"));
34
34
 
35
35
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
36
36
 
37
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
37
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
38
38
 
39
39
  function fetchHubFile(_x) {
40
40
  return _fetchHubFile.apply(this, arguments);
41
41
  }
42
42
 
43
43
  function _fetchHubFile() {
44
- _fetchHubFile = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(hubFileLocation) {
44
+ _fetchHubFile = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(hubFileLocation) {
45
45
  var hubFileText, _yield$import, HubFile;
46
46
 
47
- return _regenerator["default"].wrap(function _callee$(_context) {
47
+ return _regenerator.default.wrap(function _callee$(_context) {
48
48
  while (1) {
49
49
  switch (_context.prev = _context.next) {
50
50
  case 0:
@@ -84,10 +84,10 @@ function fetchGenomesFile(_x2) {
84
84
  }
85
85
 
86
86
  function _fetchGenomesFile() {
87
- _fetchGenomesFile = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(genomesFileLocation) {
87
+ _fetchGenomesFile = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(genomesFileLocation) {
88
88
  var genomesFileText, _yield$import2, GenomesFile;
89
89
 
90
- return _regenerator["default"].wrap(function _callee2$(_context2) {
90
+ return _regenerator.default.wrap(function _callee2$(_context2) {
91
91
  while (1) {
92
92
  switch (_context2.prev = _context2.next) {
93
93
  case 0:
@@ -121,10 +121,10 @@ function fetchTrackDbFile(_x3) {
121
121
  }
122
122
 
123
123
  function _fetchTrackDbFile() {
124
- _fetchTrackDbFile = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3(trackDbFileLocation) {
124
+ _fetchTrackDbFile = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(trackDbFileLocation) {
125
125
  var text, _yield$import3, TrackDbFile;
126
126
 
127
- return _regenerator["default"].wrap(function _callee3$(_context3) {
127
+ return _regenerator.default.wrap(function _callee3$(_context3) {
128
128
  while (1) {
129
129
  switch (_context3.prev = _context3.next) {
130
130
  case 0:
@@ -176,7 +176,7 @@ function generateTracks(trackDb, trackDbFileLocation, assemblyName, sequenceAdap
176
176
 
177
177
  var _currentTrackName$spl = currentTrackName.split(' ');
178
178
 
179
- var _currentTrackName$spl2 = (0, _slicedToArray2["default"])(_currentTrackName$spl, 1);
179
+ var _currentTrackName$spl2 = (0, _slicedToArray2.default)(_currentTrackName$spl, 1);
180
180
 
181
181
  currentTrackName = _currentTrackName$spl2[0];
182
182
  parentTracks.push(trackDb.get(currentTrackName));
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-data-management",
3
- "version": "1.7.0",
3
+ "version": "1.7.4",
4
4
  "description": "JBrowse 2 linear genome view",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -29,13 +29,14 @@
29
29
  "prepack": "yarn build; yarn useDist",
30
30
  "postpack": "yarn useSrc",
31
31
  "useDist": "node ../../scripts/useDist.js",
32
- "useSrc": "node ../../scripts/useSrc.js"
32
+ "useSrc": "node ../../scripts/useSrc.js",
33
+ "postbuild": "tsc --build tsconfig.build.json"
33
34
  },
34
35
  "dependencies": {
36
+ "@babel/runtime": "^7.17.9",
35
37
  "@gmod/ucsc-hub": "^0.1.3",
36
38
  "@material-ui/icons": "^4.9.1",
37
39
  "clsx": "^1.1.0",
38
- "pluralize": "^8.0.0",
39
40
  "react-virtualized-auto-sizer": "^1.0.2",
40
41
  "react-vtree": "^3.0.0-beta.1",
41
42
  "react-window": "^1.8.6"
@@ -53,5 +54,5 @@
53
54
  "publishConfig": {
54
55
  "access": "public"
55
56
  },
56
- "gitHead": "cc13844074d11881d211342a6a7eea113561b70b"
57
+ "gitHead": "0a3e0c58055bbab8e3ab0270c139291b96eff403"
57
58
  }
@@ -1 +0,0 @@
1
- export {};
@@ -1 +0,0 @@
1
- export {};
@@ -1 +0,0 @@
1
- export {};
@@ -1 +0,0 @@
1
- export {};