@jbrowse/plugin-data-management 1.7.0 → 1.7.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (97) hide show
  1. package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts +9 -9
  2. package/dist/AddConnectionWidget/components/AddConnectionWidget.js +17 -17
  3. package/dist/AddConnectionWidget/components/AddConnectionWidget.test.js +7 -7
  4. package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts +2 -2
  5. package/dist/AddConnectionWidget/components/ConfigureConnection.js +6 -6
  6. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +8 -8
  7. package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +8 -8
  8. package/dist/AddConnectionWidget/index.d.ts +2 -2
  9. package/dist/AddConnectionWidget/index.js +1 -1
  10. package/dist/AddConnectionWidget/model.d.ts +5 -5
  11. package/dist/AddConnectionWidget/model.js +2 -2
  12. package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +7 -7
  13. package/dist/AddTrackWidget/components/AddTrackWidget.js +20 -20
  14. package/dist/AddTrackWidget/components/AddTrackWidget.test.js +7 -7
  15. package/dist/AddTrackWidget/components/ConfirmTrack.d.ts +7 -7
  16. package/dist/AddTrackWidget/components/ConfirmTrack.js +28 -28
  17. package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts +7 -7
  18. package/dist/AddTrackWidget/components/TrackSourceSelect.js +6 -6
  19. package/dist/AddTrackWidget/index.d.ts +2 -2
  20. package/dist/AddTrackWidget/index.js +1 -1
  21. package/dist/AddTrackWidget/index.test.js +13 -13
  22. package/dist/AddTrackWidget/model.d.ts +42 -42
  23. package/dist/AddTrackWidget/model.js +2 -2
  24. package/dist/AssemblyManager/AssemblyAddForm.d.ts +6 -6
  25. package/dist/AssemblyManager/AssemblyAddForm.js +36 -36
  26. package/dist/AssemblyManager/AssemblyEditor.d.ts +5 -5
  27. package/dist/AssemblyManager/AssemblyEditor.js +3 -3
  28. package/dist/AssemblyManager/AssemblyManager.d.ts +6 -6
  29. package/dist/AssemblyManager/AssemblyManager.js +18 -18
  30. package/dist/AssemblyManager/AssemblyManager.test.js +6 -6
  31. package/dist/AssemblyManager/AssemblyTable.d.ts +13 -13
  32. package/dist/AssemblyManager/AssemblyTable.js +15 -15
  33. package/dist/AssemblyManager/index.d.ts +1 -1
  34. package/dist/AssemblyManager/index.js +1 -1
  35. package/dist/HierarchicalTrackSelectorWidget/components/CloseConnectionDialog.d.ts +7 -7
  36. package/dist/HierarchicalTrackSelectorWidget/components/CloseConnectionDialog.js +8 -8
  37. package/dist/HierarchicalTrackSelectorWidget/components/DeleteConnectionDialog.d.ts +13 -13
  38. package/dist/HierarchicalTrackSelectorWidget/components/DeleteConnectionDialog.js +5 -5
  39. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +6 -6
  40. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +58 -58
  41. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.js +10 -10
  42. package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.d.ts +9 -9
  43. package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js +11 -11
  44. package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.d.ts +10 -10
  45. package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js +9 -9
  46. package/dist/HierarchicalTrackSelectorWidget/index.d.ts +2 -2
  47. package/dist/HierarchicalTrackSelectorWidget/index.js +1 -1
  48. package/dist/HierarchicalTrackSelectorWidget/model.d.ts +37 -37
  49. package/dist/HierarchicalTrackSelectorWidget/model.js +8 -8
  50. package/dist/PluginStoreWidget/components/CustomPluginForm.d.ts +9 -9
  51. package/dist/PluginStoreWidget/components/CustomPluginForm.js +24 -24
  52. package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts +11 -11
  53. package/dist/PluginStoreWidget/components/InstalledPlugin.js +14 -14
  54. package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts +9 -9
  55. package/dist/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
  56. package/dist/PluginStoreWidget/components/PluginCard.d.ts +10 -10
  57. package/dist/PluginStoreWidget/components/PluginCard.js +13 -13
  58. package/dist/PluginStoreWidget/components/PluginStoreWidget.d.ts +7 -7
  59. package/dist/PluginStoreWidget/components/PluginStoreWidget.js +31 -31
  60. package/dist/PluginStoreWidget/components/PluginStoreWidget.test.js +13 -13
  61. package/dist/PluginStoreWidget/index.d.ts +3 -3
  62. package/dist/PluginStoreWidget/index.js +2 -2
  63. package/dist/PluginStoreWidget/model.d.ts +13 -13
  64. package/dist/PluginStoreWidget/model.js +1 -1
  65. package/dist/SetDefaultSession/SetDefaultSession.d.ts +6 -6
  66. package/dist/SetDefaultSession/SetDefaultSession.js +7 -7
  67. package/dist/SetDefaultSession/SetDefaultSession.test.js +3 -3
  68. package/dist/SetDefaultSession/index.d.ts +1 -1
  69. package/dist/SetDefaultSession/index.js +1 -1
  70. package/dist/index.d.ts +27 -27
  71. package/dist/index.js +15 -15
  72. package/dist/index.test.js +2 -2
  73. package/dist/ucsc-trackhub/configSchema.d.ts +2 -2
  74. package/dist/ucsc-trackhub/configSchema.js +2 -2
  75. package/dist/ucsc-trackhub/index.d.ts +2 -2
  76. package/dist/ucsc-trackhub/index.js +2 -2
  77. package/dist/ucsc-trackhub/model.d.ts +15 -4
  78. package/dist/ucsc-trackhub/model.js +7 -7
  79. package/dist/ucsc-trackhub/ucscAssemblies.d.ts +2 -2
  80. package/dist/ucsc-trackhub/ucscAssemblies.js +2 -2
  81. package/dist/ucsc-trackhub/ucscTrackHub.d.ts +6 -6
  82. package/dist/ucsc-trackhub/ucscTrackHub.js +9 -9
  83. package/package.json +5 -4
  84. package/dist/AddConnectionWidget/components/AddConnectionWidget.test.d.ts +0 -1
  85. package/dist/AddTrackWidget/components/AddTrackWidget.test.d.ts +0 -1
  86. package/dist/AddTrackWidget/index.test.d.ts +0 -1
  87. package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.d.ts +0 -1
  88. package/dist/HierarchicalTrackSelectorWidget/model.test.d.ts +0 -1
  89. package/dist/PluginStoreWidget/components/PluginStoreWidget.test.d.ts +0 -1
  90. package/dist/PluginStoreWidget/model.test.d.ts +0 -1
  91. package/dist/index.test.d.ts +0 -1
  92. package/dist/plugin-data-management.cjs.development.js +0 -4856
  93. package/dist/plugin-data-management.cjs.development.js.map +0 -1
  94. package/dist/plugin-data-management.cjs.production.min.js +0 -2
  95. package/dist/plugin-data-management.cjs.production.min.js.map +0 -1
  96. package/dist/plugin-data-management.esm.js +0 -4829
  97. package/dist/plugin-data-management.esm.js.map +0 -1
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _react = _interopRequireDefault(require("react"));
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@@ -49,23 +49,23 @@ function ToggleConnectionDialog(_ref) {
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50
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  return configAssemblyNames.includes(assemblyName);
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  });
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- return /*#__PURE__*/_react["default"].createElement(_core.Dialog, {
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+ return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
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  open: true,
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  onClose: handleClose,
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  maxWidth: "lg"
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- }, /*#__PURE__*/_react["default"].createElement(_core.DialogTitle, null, "Turn on/off connections", /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
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+ }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Turn on/off connections", /*#__PURE__*/_react.default.createElement(_core.IconButton, {
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  className: classes.closeButton,
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  onClick: function onClick() {
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  return handleClose();
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  }
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- }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null))), /*#__PURE__*/_react["default"].createElement(_core.DialogContent, null, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Use the checkbox to turn on/off connections"), /*#__PURE__*/_react["default"].createElement("div", {
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+ }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Use the checkbox to turn on/off connections"), /*#__PURE__*/_react.default.createElement("div", {
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  className: classes.connectionContainer
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  }, assemblySpecificConnections.map(function (conf) {
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  var name = (0, _configuration.readConfObject)(conf, 'name');
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- return /*#__PURE__*/_react["default"].createElement("div", {
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+ return /*#__PURE__*/_react.default.createElement("div", {
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  key: conf.connectionId
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- }, /*#__PURE__*/_react["default"].createElement(_core.FormControlLabel, {
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- control: /*#__PURE__*/_react["default"].createElement(_core.Checkbox, {
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+ }, /*#__PURE__*/_react.default.createElement(_core.FormControlLabel, {
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+ control: /*#__PURE__*/_react.default.createElement(_core.Checkbox, {
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  checked: !!(connectionInstances !== null && connectionInstances !== void 0 && connectionInstances.find(function (conn) {
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  return name === conn.name;
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  })),
@@ -84,7 +84,7 @@ function ToggleConnectionDialog(_ref) {
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  }),
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  label: name
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  }));
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- }), !assemblySpecificConnections.length ? /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "No connections found for ", assemblyName) : null)), /*#__PURE__*/_react["default"].createElement(_core.DialogActions, null, /*#__PURE__*/_react["default"].createElement(_core.Button, {
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+ }), !assemblySpecificConnections.length ? /*#__PURE__*/_react.default.createElement(_core.Typography, null, "No connections found for ", assemblyName) : null)), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
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  onClick: function onClick() {
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  return handleClose();
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  },
@@ -95,4 +95,4 @@ function ToggleConnectionDialog(_ref) {
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  var _default = (0, _mobxReact.observer)(ToggleConnectionDialog);
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98
- exports["default"] = _default;
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+ exports.default = _default;
@@ -1,2 +1,2 @@
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- export { default as stateModelFactory } from "./model";
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- export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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+ export { default as stateModelFactory } from "./model";
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+ export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
@@ -9,7 +9,7 @@ exports.configSchema = void 0;
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  Object.defineProperty(exports, "stateModelFactory", {
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  enumerable: true,
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  get: function get() {
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- return _model["default"];
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+ return _model.default;
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  }
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  });
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@@ -1,37 +1,37 @@
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- export function generateHierarchy(model: any, trackConfigurations: any, collapsed: any): never[];
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- declare function _default(pluginManager: any): import("mobx-state-tree").IModelType<{
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- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- type: import("mobx-state-tree").ISimpleType<"HierarchicalTrackSelectorWidget">;
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- collapsed: import("mobx-state-tree").IMapType<import("mobx-state-tree").ISimpleType<boolean>>;
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- filterText: import("mobx-state-tree").IType<string | undefined, string, string>;
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- view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<any>>;
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- }, {
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- setView(view: any): void;
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- toggleCategory(pathName: any): void;
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- clearFilterText(): void;
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- setFilterText(newText: any): void;
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- } & {
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- getRefSeqTrackConf(assemblyName: any): any;
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- trackConfigurations(assemblyName: any): any[];
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- readonly assemblyNames: any;
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- connectionTrackConfigurations(assemblyName: any, connection: any): any;
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- hierarchy(assemblyName: any): {
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- name: string;
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- id: string;
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- children: ({
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- id: any;
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- name: any;
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- children: never[];
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- state: {
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- expanded: boolean;
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- };
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- } | {
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- name: string;
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- id: string;
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- children: any[];
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- })[];
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- };
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- connectionHierarchy(assemblyName: any, connection: any): never[];
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- allTracksInCategoryPath(path: any, connection: any, assemblyName: any): {};
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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- export default _default;
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+ export function generateHierarchy(model: any, trackConfigurations: any, collapsed: any): never[];
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+ declare function _default(pluginManager: any): import("mobx-state-tree").IModelType<{
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+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ type: import("mobx-state-tree").ISimpleType<"HierarchicalTrackSelectorWidget">;
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+ collapsed: import("mobx-state-tree").IMapType<import("mobx-state-tree").ISimpleType<boolean>>;
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+ filterText: import("mobx-state-tree").IType<string | undefined, string, string>;
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+ view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<any>>;
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+ }, {
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+ setView(view: any): void;
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+ toggleCategory(pathName: any): void;
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+ clearFilterText(): void;
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+ setFilterText(newText: any): void;
13
+ } & {
14
+ getRefSeqTrackConf(assemblyName: any): any;
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+ trackConfigurations(assemblyName: any): any[];
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+ readonly assemblyNames: any;
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+ connectionTrackConfigurations(assemblyName: any, connection: any): any;
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+ hierarchy(assemblyName: any): {
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+ name: string;
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+ id: string;
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+ children: ({
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+ id: any;
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+ name: any;
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+ children: never[];
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+ state: {
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+ expanded: boolean;
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+ };
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+ } | {
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+ name: string;
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+ id: string;
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+ children: any[];
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+ })[];
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+ };
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+ connectionHierarchy(assemblyName: any, connection: any): never[];
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+ allTracksInCategoryPath(path: any, connection: any, assemblyName: any): {};
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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+ export default _default;
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  exports.generateHierarchy = generateHierarchy;
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  var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
@@ -20,7 +20,7 @@ var _util = require("@jbrowse/core/util");
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  var _mst = require("@jbrowse/core/util/types/mst");
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- function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
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+ function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
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  function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
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@@ -61,7 +61,7 @@ function generateHierarchy(model, trackConfigurations, collapsed) {
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  return passesFilter(filterText, trackConf);
62
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  }).forEach(function (trackConf) {
63
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  // copy the categories since this array can be mutated downstream
64
- var categories = (0, _toConsumableArray2["default"])((0, _configuration.readConfObject)(trackConf, 'category') || []); // silly thing where if trackId ends with sessionTrack, then push it to
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+ var categories = (0, _toConsumableArray2.default)((0, _configuration.readConfObject)(trackConf, 'category') || []); // silly thing where if trackId ends with sessionTrack, then push it to
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  // a category that starts with a space to force sort to the top...
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  // double whammy hackyness
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@@ -116,7 +116,7 @@ var _default = function _default(pluginManager) {
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  return _mobxStateTree.types.model('HierarchicalTrackSelectorWidget', {
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  id: _mst.ElementId,
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  type: _mobxStateTree.types.literal('HierarchicalTrackSelectorWidget'),
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- collapsed: _mobxStateTree.types.map(_mobxStateTree.types["boolean"]),
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+ collapsed: _mobxStateTree.types.map(_mobxStateTree.types.boolean),
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  filterText: '',
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  view: _mobxStateTree.types.safeReference(pluginManager.pluggableMstType('view', 'stateModel'))
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  }).actions(function (self) {
@@ -164,7 +164,7 @@ var _default = function _default(pluginManager) {
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  for (_iterator.s(); !(_step = _iterator.n()).done;) {
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  var _ret = _loop2();
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167
- if ((0, _typeof2["default"])(_ret) === "object") return _ret.v;
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+ if ((0, _typeof2.default)(_ret) === "object") return _ret.v;
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  }
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  } catch (err) {
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  _iterator.e(err);
@@ -192,7 +192,7 @@ var _default = function _default(pluginManager) {
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  var refseq = self.getRefSeqTrackConf(assemblyName); // filter out tracks that don't match the current assembly (check all
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  // assembly aliases) and display types
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195
- return (refseq ? [refseq] : []).concat((0, _toConsumableArray2["default"])(trackConfigurations.filter(function (conf) {
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+ return (refseq ? [refseq] : []).concat((0, _toConsumableArray2.default)(trackConfigurations.filter(function (conf) {
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  var trackConfAssemblies = (0, _configuration.readConfObject)(conf, 'assemblyNames');
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  var allAliases = assembly.allAliases;
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  return hasAnyOverlap(allAliases, trackConfAssemblies);
@@ -277,7 +277,7 @@ var _default = function _default(pluginManager) {
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  name: 'Tracks',
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  id: 'Tracks',
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  children: hier
280
- }].concat((0, _toConsumableArray2["default"])(conns))
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+ }].concat((0, _toConsumableArray2.default)(conns))
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  };
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  },
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  connectionHierarchy: function connectionHierarchy(assemblyName, connection) {
@@ -303,4 +303,4 @@ var _default = function _default(pluginManager) {
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  });
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  };
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306
- exports["default"] = _default;
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+ exports.default = _default;
@@ -1,9 +1,9 @@
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- /// <reference types="react" />
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- import { PluginStoreModel } from '../model';
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- declare function CustomPluginForm({ open, onClose, model, }: {
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- open: boolean;
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- onClose(): void;
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- model: PluginStoreModel;
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- }): JSX.Element;
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- declare const _default: typeof CustomPluginForm;
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- export default _default;
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+ /// <reference types="react" />
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+ import { PluginStoreModel } from '../model';
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+ declare function CustomPluginForm({ open, onClose, model, }: {
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+ open: boolean;
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+ onClose(): void;
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+ model: PluginStoreModel;
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+ }): JSX.Element;
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+ declare const _default: typeof CustomPluginForm;
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+ export default _default;
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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@@ -31,7 +31,7 @@ var _ExpandMore = _interopRequireDefault(require("@material-ui/icons/ExpandMore"
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  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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33
 
34
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
34
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
35
35
 
36
36
  // icons
37
37
  var useStyles = (0, _core.makeStyles)(function (theme) {
@@ -65,27 +65,27 @@ function CustomPluginForm(_ref) {
65
65
  var classes = useStyles();
66
66
 
67
67
  var _useState = (0, _react.useState)(''),
68
- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
68
+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
69
69
  umdPluginName = _useState2[0],
70
70
  setUMDPluginName = _useState2[1];
71
71
 
72
72
  var _useState3 = (0, _react.useState)(''),
73
- _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
73
+ _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
74
74
  umdPluginUrl = _useState4[0],
75
75
  setUMDPluginUrl = _useState4[1];
76
76
 
77
77
  var _useState5 = (0, _react.useState)(''),
78
- _useState6 = (0, _slicedToArray2["default"])(_useState5, 2),
78
+ _useState6 = (0, _slicedToArray2.default)(_useState5, 2),
79
79
  esmPluginUrl = _useState6[0],
80
80
  setESMPluginUrl = _useState6[1];
81
81
 
82
82
  var _useState7 = (0, _react.useState)(''),
83
- _useState8 = (0, _slicedToArray2["default"])(_useState7, 2),
83
+ _useState8 = (0, _slicedToArray2.default)(_useState7, 2),
84
84
  cjsPluginUrl = _useState8[0],
85
85
  setCJSPluginUrl = _useState8[1];
86
86
 
87
87
  var _useState9 = (0, _react.useState)(false),
88
- _useState10 = (0, _slicedToArray2["default"])(_useState9, 2),
88
+ _useState10 = (0, _slicedToArray2.default)(_useState9, 2),
89
89
  advancedOptionsOpen = _useState10[0],
90
90
  setAdvancedOptionsOpen = _useState10[1];
91
91
 
@@ -150,61 +150,61 @@ function CustomPluginForm(_ref) {
150
150
  onClose();
151
151
  }
152
152
 
153
- return /*#__PURE__*/_react["default"].createElement(_core.Dialog, {
153
+ return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
154
154
  open: open,
155
155
  onClose: handleClose
156
- }, /*#__PURE__*/_react["default"].createElement(_core.DialogTitle, null, "Add custom plugin", /*#__PURE__*/_react["default"].createElement(_IconButton["default"], {
156
+ }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Add custom plugin", /*#__PURE__*/_react.default.createElement(_IconButton.default, {
157
157
  size: "medium",
158
158
  className: classes.closeButton,
159
159
  onClick: function onClick() {
160
160
  return onClose();
161
161
  }
162
- }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null))), /*#__PURE__*/_react["default"].createElement("form", {
162
+ }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement("form", {
163
163
  onSubmit: handleSubmit
164
- }, /*#__PURE__*/_react["default"].createElement(_core.DialogContent, {
164
+ }, /*#__PURE__*/_react.default.createElement(_core.DialogContent, {
165
165
  className: classes.dialogContent
166
- }, /*#__PURE__*/_react["default"].createElement(_core.DialogContentText, null, "Enter the name of the plugin and its URL. The name should match what is defined in the plugin's build."), /*#__PURE__*/_react["default"].createElement(_core.TextField, {
166
+ }, /*#__PURE__*/_react.default.createElement(_core.DialogContentText, null, "Enter the name of the plugin and its URL. The name should match what is defined in the plugin's build."), /*#__PURE__*/_react.default.createElement(_core.TextField, {
167
167
  id: "umd-name-input",
168
168
  name: "umdName",
169
169
  label: "Plugin name",
170
170
  variant: "outlined",
171
171
  value: umdPluginName,
172
172
  onChange: handleChange
173
- }), /*#__PURE__*/_react["default"].createElement(_core.TextField, {
173
+ }), /*#__PURE__*/_react.default.createElement(_core.TextField, {
174
174
  id: "umd-url-input",
175
175
  name: "umdUrl",
176
176
  label: "Plugin URL",
177
177
  variant: "outlined",
178
178
  value: umdPluginUrl,
179
179
  onChange: handleChange
180
- }), /*#__PURE__*/_react["default"].createElement(_core.DialogContentText, {
180
+ }), /*#__PURE__*/_react.default.createElement(_core.DialogContentText, {
181
181
  onClick: handleOpenAdvancedOptions
182
- }, /*#__PURE__*/_react["default"].createElement(_IconButton["default"], {
183
- className: (0, _clsx2["default"])(classes.expand, (0, _defineProperty2["default"])({}, classes.expandOpen, advancedOptionsOpen)),
182
+ }, /*#__PURE__*/_react.default.createElement(_IconButton.default, {
183
+ className: (0, _clsx2.default)(classes.expand, (0, _defineProperty2.default)({}, classes.expandOpen, advancedOptionsOpen)),
184
184
  "aria-expanded": advancedOptionsOpen,
185
185
  "aria-label": "show more"
186
- }, /*#__PURE__*/_react["default"].createElement(_ExpandMore["default"], null)), "Advanced options"), /*#__PURE__*/_react["default"].createElement(_core.Collapse, {
187
- "in": advancedOptionsOpen
188
- }, /*#__PURE__*/_react["default"].createElement("div", {
186
+ }, /*#__PURE__*/_react.default.createElement(_ExpandMore.default, null)), "Advanced options"), /*#__PURE__*/_react.default.createElement(_core.Collapse, {
187
+ in: advancedOptionsOpen
188
+ }, /*#__PURE__*/_react.default.createElement("div", {
189
189
  className: classes.dialogContent
190
- }, /*#__PURE__*/_react["default"].createElement(_core.DialogContentText, null, "The above fields assume that the plugin is built in UMD format. If your plugin is in another format, or you have additional builds you want to add (such as a CJS build for using NodeJS APIs in desktop), you can enter the URLs for those builds below."), /*#__PURE__*/_react["default"].createElement(_core.TextField, {
190
+ }, /*#__PURE__*/_react.default.createElement(_core.DialogContentText, null, "The above fields assume that the plugin is built in UMD format. If your plugin is in another format, or you have additional builds you want to add (such as a CJS build for using NodeJS APIs in desktop), you can enter the URLs for those builds below."), /*#__PURE__*/_react.default.createElement(_core.TextField, {
191
191
  id: "esm-url-input",
192
192
  name: "esmUrl",
193
193
  label: "ESM build URL",
194
194
  variant: "outlined",
195
195
  value: esmPluginUrl,
196
196
  onChange: handleChange
197
- }), /*#__PURE__*/_react["default"].createElement(_core.TextField, {
197
+ }), /*#__PURE__*/_react.default.createElement(_core.TextField, {
198
198
  id: "cjs-url-input",
199
199
  name: "cjsUrl",
200
200
  label: "CJS build URL",
201
201
  variant: "outlined",
202
202
  value: cjsPluginUrl,
203
203
  onChange: handleChange
204
- })))), /*#__PURE__*/_react["default"].createElement(_core.DialogActions, null, /*#__PURE__*/_react["default"].createElement(_core.Button, {
204
+ })))), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
205
205
  variant: "contained",
206
206
  onClick: handleClose
207
- }, "Cancel"), /*#__PURE__*/_react["default"].createElement(_core.Button, {
207
+ }, "Cancel"), /*#__PURE__*/_react.default.createElement(_core.Button, {
208
208
  variant: "contained",
209
209
  color: "primary",
210
210
  onClick: handleSubmit,
@@ -214,4 +214,4 @@ function CustomPluginForm(_ref) {
214
214
 
215
215
  var _default = (0, _mobxReact.observer)(CustomPluginForm);
216
216
 
217
- exports["default"] = _default;
217
+ exports.default = _default;
@@ -1,11 +1,11 @@
1
- /// <reference types="react" />
2
- import PluginManager from '@jbrowse/core/PluginManager';
3
- import { BasePlugin } from '@jbrowse/core/util/types';
4
- import { PluginStoreModel } from '../model';
5
- declare function InstalledPlugin({ plugin, model, pluginManager, }: {
6
- plugin: BasePlugin;
7
- model: PluginStoreModel;
8
- pluginManager: PluginManager;
9
- }): JSX.Element;
10
- declare const _default: typeof InstalledPlugin;
11
- export default _default;
1
+ /// <reference types="react" />
2
+ import PluginManager from '@jbrowse/core/PluginManager';
3
+ import { BasePlugin } from '@jbrowse/core/util/types';
4
+ import { PluginStoreModel } from '../model';
5
+ declare function InstalledPlugin({ plugin, model, pluginManager, }: {
6
+ plugin: BasePlugin;
7
+ model: PluginStoreModel;
8
+ pluginManager: PluginManager;
9
+ }): JSX.Element;
10
+ declare const _default: typeof InstalledPlugin;
11
+ export default _default;
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
- exports["default"] = void 0;
10
+ exports.default = void 0;
11
11
 
12
12
  var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
13
13
 
@@ -29,7 +29,7 @@ var _types = require("@jbrowse/core/util/types");
29
29
 
30
30
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
31
31
 
32
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
32
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
33
33
 
34
34
  var useStyles = (0, _core.makeStyles)(function () {
35
35
  return {
@@ -49,28 +49,28 @@ var useStyles = (0, _core.makeStyles)(function () {
49
49
 
50
50
  function LockedPlugin() {
51
51
  var classes = useStyles();
52
- return /*#__PURE__*/_react["default"].createElement(_core.Tooltip, {
52
+ return /*#__PURE__*/_react.default.createElement(_core.Tooltip, {
53
53
  className: classes.lockedPluginTooltip,
54
54
  title: "This plugin was installed by an administrator, you cannot remove it."
55
- }, /*#__PURE__*/_react["default"].createElement(_Lock["default"], null));
55
+ }, /*#__PURE__*/_react.default.createElement(_Lock.default, null));
56
56
  }
57
57
 
58
58
  function PluginDialog(_ref) {
59
59
  var _onClose = _ref.onClose,
60
60
  plugin = _ref.plugin;
61
61
  var classes = useStyles();
62
- return /*#__PURE__*/_react["default"].createElement(_core.Dialog, {
62
+ return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
63
63
  open: true,
64
64
  onClose: function onClose() {
65
65
  return _onClose();
66
66
  }
67
- }, /*#__PURE__*/_react["default"].createElement(_core.DialogTitle, null, /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
67
+ }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, /*#__PURE__*/_react.default.createElement(_core.IconButton, {
68
68
  className: classes.closeDialog,
69
69
  "aria-label": "close-dialog",
70
70
  onClick: function onClick() {
71
71
  return _onClose();
72
72
  }
73
- }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null))), /*#__PURE__*/_react["default"].createElement(_core.DialogContent, null, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Please confirm that you want to remove ", plugin, ". Note: if any resources in this session still use this plugin, it may cause your session to crash"), /*#__PURE__*/_react["default"].createElement(_core.DialogActions, null, /*#__PURE__*/_react["default"].createElement(_core.Button, {
73
+ }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Please confirm that you want to remove ", plugin, ". Note: if any resources in this session still use this plugin, it may cause your session to crash"), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
74
74
  variant: "contained",
75
75
  color: "primary",
76
76
  onClick: function onClick() {
@@ -79,7 +79,7 @@ function PluginDialog(_ref) {
79
79
  _onClose(plugin);
80
80
  }, 500);
81
81
  }
82
- }, "Confirm"), /*#__PURE__*/_react["default"].createElement(_core.Button, {
82
+ }, "Confirm"), /*#__PURE__*/_react.default.createElement(_core.Button, {
83
83
  variant: "contained",
84
84
  color: "secondary",
85
85
  onClick: function onClick() {
@@ -94,7 +94,7 @@ function InstalledPlugin(_ref2) {
94
94
  pluginManager = _ref2.pluginManager;
95
95
 
96
96
  var _useState = (0, _react.useState)(),
97
- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
97
+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
98
98
  dialogPlugin = _useState2[0],
99
99
  setDialogPlugin = _useState2[1];
100
100
 
@@ -107,7 +107,7 @@ function InstalledPlugin(_ref2) {
107
107
  var rootModel = (0, _mobxStateTree.getParent)(model, 3);
108
108
  var jbrowse = rootModel.jbrowse,
109
109
  adminMode = rootModel.adminMode;
110
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, dialogPlugin ? /*#__PURE__*/_react["default"].createElement(PluginDialog, {
110
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, dialogPlugin ? /*#__PURE__*/_react.default.createElement(PluginDialog, {
111
111
  plugin: dialogPlugin,
112
112
  onClose: function onClose(name) {
113
113
  if (name) {
@@ -122,17 +122,17 @@ function InstalledPlugin(_ref2) {
122
122
 
123
123
  setDialogPlugin(undefined);
124
124
  }
125
- }) : null, /*#__PURE__*/_react["default"].createElement(_core.ListItem, {
125
+ }) : null, /*#__PURE__*/_react.default.createElement(_core.ListItem, {
126
126
  key: plugin.name
127
- }, adminMode || isSessionPlugin ? /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
127
+ }, adminMode || isSessionPlugin ? /*#__PURE__*/_react.default.createElement(_core.IconButton, {
128
128
  "aria-label": "removePlugin",
129
129
  "data-testid": "removePlugin-".concat(plugin.name),
130
130
  onClick: function onClick() {
131
131
  return setDialogPlugin(plugin.name);
132
132
  }
133
- }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null)) : /*#__PURE__*/_react["default"].createElement(LockedPlugin, null), /*#__PURE__*/_react["default"].createElement(_core.Typography, null, plugin.name)));
133
+ }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : /*#__PURE__*/_react.default.createElement(LockedPlugin, null), /*#__PURE__*/_react.default.createElement(_core.Typography, null, plugin.name)));
134
134
  }
135
135
 
136
136
  var _default = (0, _mobxReact.observer)(InstalledPlugin);
137
137
 
138
- exports["default"] = _default;
138
+ exports.default = _default;
@@ -1,9 +1,9 @@
1
- /// <reference types="react" />
2
- import PluginManager from '@jbrowse/core/PluginManager';
3
- import { PluginStoreModel } from '../model';
4
- declare function InstalledPluginsList({ pluginManager, model, }: {
5
- pluginManager: PluginManager;
6
- model: PluginStoreModel;
7
- }): JSX.Element;
8
- declare const _default: typeof InstalledPluginsList;
9
- export default _default;
1
+ /// <reference types="react" />
2
+ import PluginManager from '@jbrowse/core/PluginManager';
3
+ import { PluginStoreModel } from '../model';
4
+ declare function InstalledPluginsList({ pluginManager, model, }: {
5
+ pluginManager: PluginManager;
6
+ model: PluginStoreModel;
7
+ }): JSX.Element;
8
+ declare const _default: typeof InstalledPluginsList;
9
+ export default _default;
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
10
  var _react = _interopRequireDefault(require("react"));
11
11
 
@@ -30,18 +30,18 @@ function InstalledPluginsList(_ref) {
30
30
  var externalPlugins = plugins.filter(function (plugin) {
31
31
  return !corePlugins.includes(plugin.name);
32
32
  });
33
- return /*#__PURE__*/_react["default"].createElement(_core.List, null, externalPlugins.length ? externalPlugins.filter(function (plugin) {
33
+ return /*#__PURE__*/_react.default.createElement(_core.List, null, externalPlugins.length ? externalPlugins.filter(function (plugin) {
34
34
  return plugin.name.toLowerCase().includes(model.filterText.toLowerCase());
35
35
  }).map(function (plugin) {
36
- return /*#__PURE__*/_react["default"].createElement(_InstalledPlugin["default"], {
36
+ return /*#__PURE__*/_react.default.createElement(_InstalledPlugin.default, {
37
37
  key: plugin.name,
38
38
  plugin: plugin,
39
39
  model: model,
40
40
  pluginManager: pluginManager
41
41
  });
42
- }) : /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "No plugins currently installed"));
42
+ }) : /*#__PURE__*/_react.default.createElement(_core.Typography, null, "No plugins currently installed"));
43
43
  }
44
44
 
45
45
  var _default = (0, _mobxReact.observer)(InstalledPluginsList);
46
46
 
47
- exports["default"] = _default;
47
+ exports.default = _default;
@@ -1,10 +1,10 @@
1
- /// <reference types="react" />
2
- import { JBrowsePlugin } from '@jbrowse/core/util/types';
3
- import { PluginStoreModel } from '../model';
4
- declare function PluginCard({ plugin, model, adminMode, }: {
5
- plugin: JBrowsePlugin;
6
- model: PluginStoreModel;
7
- adminMode: boolean;
8
- }): JSX.Element;
9
- declare const _default: typeof PluginCard;
10
- export default _default;
1
+ /// <reference types="react" />
2
+ import { JBrowsePlugin } from '@jbrowse/core/util/types';
3
+ import { PluginStoreModel } from '../model';
4
+ declare function PluginCard({ plugin, model, adminMode, }: {
5
+ plugin: JBrowsePlugin;
6
+ model: PluginStoreModel;
7
+ adminMode: boolean;
8
+ }): JSX.Element;
9
+ declare const _default: typeof PluginCard;
10
+ export default _default;