@jbrowse/plugin-data-management 1.7.0 → 1.7.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts +9 -9
- package/dist/AddConnectionWidget/components/AddConnectionWidget.js +17 -17
- package/dist/AddConnectionWidget/components/AddConnectionWidget.test.js +7 -7
- package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts +2 -2
- package/dist/AddConnectionWidget/components/ConfigureConnection.js +6 -6
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +8 -8
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +8 -8
- package/dist/AddConnectionWidget/index.d.ts +2 -2
- package/dist/AddConnectionWidget/index.js +1 -1
- package/dist/AddConnectionWidget/model.d.ts +5 -5
- package/dist/AddConnectionWidget/model.js +2 -2
- package/dist/AddTrackWidget/components/AddTrackWidget.d.ts +7 -7
- package/dist/AddTrackWidget/components/AddTrackWidget.js +20 -20
- package/dist/AddTrackWidget/components/AddTrackWidget.test.js +7 -7
- package/dist/AddTrackWidget/components/ConfirmTrack.d.ts +7 -7
- package/dist/AddTrackWidget/components/ConfirmTrack.js +28 -28
- package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts +7 -7
- package/dist/AddTrackWidget/components/TrackSourceSelect.js +6 -6
- package/dist/AddTrackWidget/index.d.ts +2 -2
- package/dist/AddTrackWidget/index.js +1 -1
- package/dist/AddTrackWidget/index.test.js +13 -13
- package/dist/AddTrackWidget/model.d.ts +42 -42
- package/dist/AddTrackWidget/model.js +2 -2
- package/dist/AssemblyManager/AssemblyAddForm.d.ts +6 -6
- package/dist/AssemblyManager/AssemblyAddForm.js +36 -36
- package/dist/AssemblyManager/AssemblyEditor.d.ts +5 -5
- package/dist/AssemblyManager/AssemblyEditor.js +3 -3
- package/dist/AssemblyManager/AssemblyManager.d.ts +6 -6
- package/dist/AssemblyManager/AssemblyManager.js +18 -18
- package/dist/AssemblyManager/AssemblyManager.test.js +6 -6
- package/dist/AssemblyManager/AssemblyTable.d.ts +13 -13
- package/dist/AssemblyManager/AssemblyTable.js +15 -15
- package/dist/AssemblyManager/index.d.ts +1 -1
- package/dist/AssemblyManager/index.js +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/CloseConnectionDialog.d.ts +7 -7
- package/dist/HierarchicalTrackSelectorWidget/components/CloseConnectionDialog.js +8 -8
- package/dist/HierarchicalTrackSelectorWidget/components/DeleteConnectionDialog.d.ts +13 -13
- package/dist/HierarchicalTrackSelectorWidget/components/DeleteConnectionDialog.js +5 -5
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts +6 -6
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +58 -58
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.js +10 -10
- package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.d.ts +9 -9
- package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js +11 -11
- package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.d.ts +10 -10
- package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js +9 -9
- package/dist/HierarchicalTrackSelectorWidget/index.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/index.js +1 -1
- package/dist/HierarchicalTrackSelectorWidget/model.d.ts +37 -37
- package/dist/HierarchicalTrackSelectorWidget/model.js +8 -8
- package/dist/PluginStoreWidget/components/CustomPluginForm.d.ts +9 -9
- package/dist/PluginStoreWidget/components/CustomPluginForm.js +24 -24
- package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts +11 -11
- package/dist/PluginStoreWidget/components/InstalledPlugin.js +14 -14
- package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts +9 -9
- package/dist/PluginStoreWidget/components/InstalledPluginsList.js +5 -5
- package/dist/PluginStoreWidget/components/PluginCard.d.ts +10 -10
- package/dist/PluginStoreWidget/components/PluginCard.js +13 -13
- package/dist/PluginStoreWidget/components/PluginStoreWidget.d.ts +7 -7
- package/dist/PluginStoreWidget/components/PluginStoreWidget.js +31 -31
- package/dist/PluginStoreWidget/components/PluginStoreWidget.test.js +13 -13
- package/dist/PluginStoreWidget/index.d.ts +3 -3
- package/dist/PluginStoreWidget/index.js +2 -2
- package/dist/PluginStoreWidget/model.d.ts +13 -13
- package/dist/PluginStoreWidget/model.js +1 -1
- package/dist/SetDefaultSession/SetDefaultSession.d.ts +6 -6
- package/dist/SetDefaultSession/SetDefaultSession.js +7 -7
- package/dist/SetDefaultSession/SetDefaultSession.test.js +3 -3
- package/dist/SetDefaultSession/index.d.ts +1 -1
- package/dist/SetDefaultSession/index.js +1 -1
- package/dist/index.d.ts +27 -27
- package/dist/index.js +15 -15
- package/dist/index.test.js +2 -2
- package/dist/ucsc-trackhub/configSchema.d.ts +2 -2
- package/dist/ucsc-trackhub/configSchema.js +2 -2
- package/dist/ucsc-trackhub/index.d.ts +2 -2
- package/dist/ucsc-trackhub/index.js +2 -2
- package/dist/ucsc-trackhub/model.d.ts +15 -4
- package/dist/ucsc-trackhub/model.js +7 -7
- package/dist/ucsc-trackhub/ucscAssemblies.d.ts +2 -2
- package/dist/ucsc-trackhub/ucscAssemblies.js +2 -2
- package/dist/ucsc-trackhub/ucscTrackHub.d.ts +6 -6
- package/dist/ucsc-trackhub/ucscTrackHub.js +9 -9
- package/package.json +5 -4
- package/dist/AddConnectionWidget/components/AddConnectionWidget.test.d.ts +0 -1
- package/dist/AddTrackWidget/components/AddTrackWidget.test.d.ts +0 -1
- package/dist/AddTrackWidget/index.test.d.ts +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.d.ts +0 -1
- package/dist/HierarchicalTrackSelectorWidget/model.test.d.ts +0 -1
- package/dist/PluginStoreWidget/components/PluginStoreWidget.test.d.ts +0 -1
- package/dist/PluginStoreWidget/model.test.d.ts +0 -1
- package/dist/index.test.d.ts +0 -1
- package/dist/plugin-data-management.cjs.development.js +0 -4856
- package/dist/plugin-data-management.cjs.development.js.map +0 -1
- package/dist/plugin-data-management.cjs.production.min.js +0 -2
- package/dist/plugin-data-management.cjs.production.min.js.map +0 -1
- package/dist/plugin-data-management.esm.js +0 -4829
- package/dist/plugin-data-management.esm.js.map +0 -1
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@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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exports
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exports.default = void 0;
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var _react = _interopRequireDefault(require("react"));
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@@ -49,23 +49,23 @@ function ToggleConnectionDialog(_ref) {
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return configAssemblyNames.includes(assemblyName);
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});
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return /*#__PURE__*/_react
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return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
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open: true,
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onClose: handleClose,
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Turn on/off connections", /*#__PURE__*/_react.default.createElement(_core.IconButton, {
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onClick: function onClick() {
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Use the checkbox to turn on/off connections"), /*#__PURE__*/_react.default.createElement("div", {
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className: classes.connectionContainer
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}, assemblySpecificConnections.map(function (conf) {
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var name = (0, _configuration.readConfObject)(conf, 'name');
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return /*#__PURE__*/_react
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return /*#__PURE__*/_react.default.createElement("div", {
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key: conf.connectionId
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}, /*#__PURE__*/_react
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control: /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement(_core.FormControlLabel, {
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control: /*#__PURE__*/_react.default.createElement(_core.Checkbox, {
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checked: !!(connectionInstances !== null && connectionInstances !== void 0 && connectionInstances.find(function (conn) {
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})),
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label: name
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}), !assemblySpecificConnections.length ? /*#__PURE__*/_react
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}), !assemblySpecificConnections.length ? /*#__PURE__*/_react.default.createElement(_core.Typography, null, "No connections found for ", assemblyName) : null)), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
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onClick: function onClick() {
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return handleClose();
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var _default = (0, _mobxReact.observer)(ToggleConnectionDialog);
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exports
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exports.default = _default;
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export { default as stateModelFactory } from "./model";
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export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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export { default as stateModelFactory } from "./model";
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export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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export function generateHierarchy(model: any, trackConfigurations: any, collapsed: any): never[];
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declare function _default(pluginManager: any): import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<"HierarchicalTrackSelectorWidget">;
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collapsed: import("mobx-state-tree").IMapType<import("mobx-state-tree").ISimpleType<boolean>>;
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filterText: import("mobx-state-tree").IType<string | undefined, string, string>;
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view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<any>>;
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}, {
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setView(view: any): void;
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toggleCategory(pathName: any): void;
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clearFilterText(): void;
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setFilterText(newText: any): void;
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} & {
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getRefSeqTrackConf(assemblyName: any): any;
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trackConfigurations(assemblyName: any): any[];
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readonly assemblyNames: any;
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connectionTrackConfigurations(assemblyName: any, connection: any): any;
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hierarchy(assemblyName: any): {
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name: string;
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id: string;
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children: ({
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id: any;
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name: any;
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children: never[];
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state: {
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expanded: boolean;
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};
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} | {
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name: string;
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id: string;
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children: any[];
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})[];
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};
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connectionHierarchy(assemblyName: any, connection: any): never[];
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allTracksInCategoryPath(path: any, connection: any, assemblyName: any): {};
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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export default _default;
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export function generateHierarchy(model: any, trackConfigurations: any, collapsed: any): never[];
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declare function _default(pluginManager: any): import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<"HierarchicalTrackSelectorWidget">;
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collapsed: import("mobx-state-tree").IMapType<import("mobx-state-tree").ISimpleType<boolean>>;
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filterText: import("mobx-state-tree").IType<string | undefined, string, string>;
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view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<any>>;
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}, {
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setView(view: any): void;
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toggleCategory(pathName: any): void;
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clearFilterText(): void;
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setFilterText(newText: any): void;
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} & {
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getRefSeqTrackConf(assemblyName: any): any;
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trackConfigurations(assemblyName: any): any[];
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readonly assemblyNames: any;
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connectionTrackConfigurations(assemblyName: any, connection: any): any;
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hierarchy(assemblyName: any): {
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name: string;
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id: string;
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children: ({
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id: any;
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name: any;
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children: never[];
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state: {
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expanded: boolean;
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};
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} | {
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name: string;
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id: string;
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children: any[];
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})[];
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};
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connectionHierarchy(assemblyName: any, connection: any): never[];
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allTracksInCategoryPath(path: any, connection: any, assemblyName: any): {};
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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export default _default;
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exports
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exports.default = void 0;
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exports.generateHierarchy = generateHierarchy;
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function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it
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function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
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function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
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var categories = (0, _toConsumableArray2.default)((0, _configuration.readConfObject)(trackConf, 'category') || []); // silly thing where if trackId ends with sessionTrack, then push it to
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collapsed: _mobxStateTree.types.map(_mobxStateTree.types
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collapsed: _mobxStateTree.types.map(_mobxStateTree.types.boolean),
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filterText: '',
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view: _mobxStateTree.types.safeReference(pluginManager.pluggableMstType('view', 'stateModel'))
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}).actions(function (self) {
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for (_iterator.s(); !(_step = _iterator.n()).done;) {
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if ((0, _typeof2
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if ((0, _typeof2.default)(_ret) === "object") return _ret.v;
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}
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} catch (err) {
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_iterator.e(err);
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var refseq = self.getRefSeqTrackConf(assemblyName); // filter out tracks that don't match the current assembly (check all
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// assembly aliases) and display types
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var rootModel = (0, _mobxStateTree.getParent)(model, 3);
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}, /*#__PURE__*/_react
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}, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : /*#__PURE__*/_react.default.createElement(LockedPlugin, null), /*#__PURE__*/_react.default.createElement(_core.Typography, null, plugin.name)));
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exports
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/// <reference types="react" />
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import PluginManager from '@jbrowse/core/PluginManager';
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declare function InstalledPluginsList({ pluginManager, model, }: {
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/// <reference types="react" />
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declare function InstalledPluginsList({ pluginManager, model, }: {
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pluginManager: PluginManager;
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model: PluginStoreModel;
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}): JSX.Element;
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declare const _default: typeof InstalledPluginsList;
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value: true
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exports
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}) : /*#__PURE__*/_react
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}) : /*#__PURE__*/_react.default.createElement(_core.Typography, null, "No plugins currently installed"));
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}
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exports
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exports.default = _default;
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/// <reference types="react" />
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import { JBrowsePlugin } from '@jbrowse/core/util/types';
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import { PluginStoreModel } from '../model';
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declare function PluginCard({ plugin, model, adminMode, }: {
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plugin: JBrowsePlugin;
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model: PluginStoreModel;
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}): JSX.Element;
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declare const _default: typeof PluginCard;
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export default _default;
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|
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/// <reference types="react" />
|
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import { JBrowsePlugin } from '@jbrowse/core/util/types';
|
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|
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import { PluginStoreModel } from '../model';
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declare function PluginCard({ plugin, model, adminMode, }: {
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|
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plugin: JBrowsePlugin;
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|
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model: PluginStoreModel;
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|
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adminMode: boolean;
|
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|
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}): JSX.Element;
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declare const _default: typeof PluginCard;
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|
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export default _default;
|