@jbrowse/plugin-alignments 2.1.7 → 2.2.1

package/src/SNPCoverageRenderer/configSchema.ts

@@ -1,30 +1,50 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration'
 
-export default ConfigurationSchema(
+/**
+ * #config SNPCoverageRenderer
+ */
+function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
+
+const SNPCoverageRenderer = ConfigurationSchema(
   'SNPCoverageRenderer',
   {
+    /**
+     * #slot
+     */
     clipColor: {
       type: 'color',
       description: 'the color of the clipping marker',
       defaultValue: 'red',
     },
+    /**
+     * #slot
+     */
     indicatorThreshold: {
       type: 'number',
       description:
         'the proportion of reads containing a insertion/clip indicator',
       defaultValue: 0.4,
     },
+    /**
+     * #slot
+     */
     drawArcs: {
       type: 'boolean',
       description: 'Draw sashimi-style arcs for intron features',
       defaultValue: true,
     },
+    /**
+     * #slot
+     */
     drawInterbaseCounts: {
       type: 'boolean',
       description:
         'draw count "upsidedown histogram" of the interbase events that don\'t contribute to the coverage count so are not drawn in the normal histogram',
       defaultValue: true,
     },
+    /**
+     * #slot
+     */
     drawIndicators: {
       type: 'boolean',
       description:
@@ -34,3 +54,5 @@ export default ConfigurationSchema(
   },
   { explicitlyTyped: true },
 )
+
+export default SNPCoverageRenderer

package/src/SNPCoverageRenderer/index.ts

@@ -1,16 +1,9 @@
-import { ConfigurationSchema } from '@jbrowse/core/configuration'
-import ConfigSchema from './configSchema'
+import configSchema from './configSchema'
 import PluginManager from '@jbrowse/core/PluginManager'
 import SNPCoverageRenderer from './SNPCoverageRenderer'
 
 import { WiggleRendering } from '@jbrowse/plugin-wiggle'
 
-export const configSchema = ConfigurationSchema(
-  'SNPCoverageRenderer',
-  {},
-  { baseConfiguration: ConfigSchema, explicitlyTyped: true },
-)
-
 export default function register(pluginManager: PluginManager) {
   pluginManager.addRendererType(
     () =>

package/src/__snapshots__/index.test.ts.snap

@@ -1,3 +1,3 @@
 // Jest Snapshot v1, https://goo.gl/fbAQLP
 
-exports[`plugin in a stock JBrowse 1`] = `Object {}`;
+exports[`plugin in a stock JBrowse 1`] = `{}`;

package/src/index.ts

@@ -12,7 +12,10 @@ import SNPCoverageRendererF from './SNPCoverageRenderer'
 import PileupRendererF from './PileupRenderer'
 import LinearAlignmentsDisplayF from './LinearAlignmentsDisplay'
 import LinearSNPCoverageDisplayF from './LinearSNPCoverageDisplay'
-import LinearPileupDisplayF from './LinearPileupDisplay'
+import LinearPileupDisplayF, {
+  linearPileupDisplayStateModelFactory,
+  linearPileupDisplayConfigSchemaFactory,
+} from './LinearPileupDisplay'
 import AlignmentsTrackF from './AlignmentsTrack'
 import AlignmentsFeatureWidgetF from './AlignmentsFeatureDetail'
 
@@ -28,9 +31,6 @@ import {
   TrackTypeGuesser,
 } from '@jbrowse/core/util/tracks'
 
-export { MismatchParser }
-export type { LinearPileupDisplayModel }
-
 export default class AlignmentsPlugin extends Plugin {
   name = 'AlignmentsPlugin'
 
@@ -125,3 +125,10 @@ export default class AlignmentsPlugin extends Plugin {
     )
   }
 }
+
+export {
+  linearPileupDisplayConfigSchemaFactory,
+  linearPileupDisplayStateModelFactory,
+  MismatchParser,
+}
+export type { LinearPileupDisplayModel }

package/src/declare.d.ts

@@ -1 +0,0 @@
-declare module '@gmod/cram'