@jbrowse/plugin-alignments 2.1.7 → 2.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js +12 -13
- package/dist/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js.map +1 -1
- package/dist/AlignmentsTrack/index.d.ts +1 -1
- package/dist/AlignmentsTrack/index.js +16 -6
- package/dist/AlignmentsTrack/index.js.map +1 -1
- package/dist/BamAdapter/BamAdapter.d.ts +7 -3
- package/dist/BamAdapter/BamAdapter.js +36 -31
- package/dist/BamAdapter/BamAdapter.js.map +1 -1
- package/dist/BamAdapter/BamSlightlyLazyFeature.js +1 -0
- package/dist/BamAdapter/BamSlightlyLazyFeature.js.map +1 -1
- package/dist/BamAdapter/MismatchParser.d.ts +2 -2
- package/dist/BamAdapter/MismatchParser.js +4 -7
- package/dist/BamAdapter/MismatchParser.js.map +1 -1
- package/dist/BamAdapter/configSchema.d.ts +2 -2
- package/dist/BamAdapter/configSchema.js +27 -2
- package/dist/BamAdapter/configSchema.js.map +1 -1
- package/dist/BamAdapter/index.js +7 -5
- package/dist/BamAdapter/index.js.map +1 -1
- package/dist/CramAdapter/CramAdapter.d.ts +13 -7
- package/dist/CramAdapter/CramAdapter.js +56 -61
- package/dist/CramAdapter/CramAdapter.js.map +1 -1
- package/dist/CramAdapter/CramSlightlyLazyFeature.d.ts +15 -23
- package/dist/CramAdapter/CramSlightlyLazyFeature.js +10 -217
- package/dist/CramAdapter/CramSlightlyLazyFeature.js.map +1 -1
- package/dist/CramAdapter/CramTestAdapters.d.ts +1 -1
- package/dist/CramAdapter/CramTestAdapters.js +1 -1
- package/dist/CramAdapter/CramTestAdapters.js.map +1 -1
- package/dist/CramAdapter/configSchema.d.ts +2 -3
- package/dist/CramAdapter/configSchema.js +44 -22
- package/dist/CramAdapter/configSchema.js.map +1 -1
- package/dist/CramAdapter/index.js +7 -5
- package/dist/CramAdapter/index.js.map +1 -1
- package/dist/CramAdapter/util.d.ts +18 -0
- package/dist/CramAdapter/util.js +241 -0
- package/dist/CramAdapter/util.js.map +1 -0
- package/dist/HtsgetBamAdapter/HtsgetBamAdapter.d.ts +5 -2
- package/dist/HtsgetBamAdapter/HtsgetBamAdapter.js +15 -20
- package/dist/HtsgetBamAdapter/HtsgetBamAdapter.js.map +1 -1
- package/dist/HtsgetBamAdapter/configSchema.d.ts +2 -2
- package/dist/HtsgetBamAdapter/configSchema.js +20 -3
- package/dist/HtsgetBamAdapter/configSchema.js.map +1 -1
- package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +1 -1
- package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map +1 -1
- package/dist/LinearAlignmentsDisplay/models/configSchema.d.ts +2 -2
- package/dist/LinearAlignmentsDisplay/models/configSchema.js +23 -6
- package/dist/LinearAlignmentsDisplay/models/configSchema.js.map +1 -1
- package/dist/LinearAlignmentsDisplay/models/model.d.ts +77 -10
- package/dist/LinearAlignmentsDisplay/models/model.js +102 -9
- package/dist/LinearAlignmentsDisplay/models/model.js.map +1 -1
- package/dist/LinearPileupDisplay/configSchema.d.ts +4 -4
- package/dist/LinearPileupDisplay/configSchema.js +22 -5
- package/dist/LinearPileupDisplay/configSchema.js.map +1 -1
- package/dist/LinearPileupDisplay/index.d.ts +3 -0
- package/dist/LinearPileupDisplay/index.js +3 -0
- package/dist/LinearPileupDisplay/index.js.map +1 -1
- package/dist/LinearPileupDisplay/model.d.ts +100 -6
- package/dist/LinearPileupDisplay/model.js +611 -503
- package/dist/LinearPileupDisplay/model.js.map +1 -1
- package/dist/LinearSNPCoverageDisplay/components/Tooltip.d.ts +1 -1
- package/dist/LinearSNPCoverageDisplay/models/configSchema.js +33 -4
- package/dist/LinearSNPCoverageDisplay/models/configSchema.js.map +1 -1
- package/dist/LinearSNPCoverageDisplay/models/model.d.ts +87 -4
- package/dist/LinearSNPCoverageDisplay/models/model.js +240 -159
- package/dist/LinearSNPCoverageDisplay/models/model.js.map +1 -1
- package/dist/PileupRPC/rpcMethods.d.ts +1 -1
- package/dist/PileupRPC/rpcMethods.js +12 -7
- package/dist/PileupRPC/rpcMethods.js.map +1 -1
- package/dist/PileupRenderer/PileupLayoutSession.d.ts +1 -1
- package/dist/PileupRenderer/PileupRenderer.d.ts +1 -1
- package/dist/PileupRenderer/PileupRenderer.js +37 -34
- package/dist/PileupRenderer/PileupRenderer.js.map +1 -1
- package/dist/PileupRenderer/configSchema.d.ts +2 -2
- package/dist/PileupRenderer/configSchema.js +37 -2
- package/dist/PileupRenderer/configSchema.js.map +1 -1
- package/dist/PileupRenderer/index.js +8 -6
- package/dist/PileupRenderer/index.js.map +1 -1
- package/dist/SNPCoverageAdapter/configSchema.d.ts +2 -3
- package/dist/SNPCoverageAdapter/configSchema.js +15 -4
- package/dist/SNPCoverageAdapter/configSchema.js.map +1 -1
- package/dist/SNPCoverageAdapter/index.d.ts +1 -2
- package/dist/SNPCoverageAdapter/index.js +17 -14
- package/dist/SNPCoverageAdapter/index.js.map +1 -1
- package/dist/SNPCoverageRenderer/configSchema.d.ts +2 -2
- package/dist/SNPCoverageRenderer/configSchema.js +21 -1
- package/dist/SNPCoverageRenderer/configSchema.js.map +1 -1
- package/dist/SNPCoverageRenderer/index.d.ts +0 -1
- package/dist/SNPCoverageRenderer/index.js +1 -4
- package/dist/SNPCoverageRenderer/index.js.map +1 -1
- package/dist/index.d.ts +3 -2
- package/dist/index.js +4 -2
- package/dist/index.js.map +1 -1
- package/esm/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js +12 -13
- package/esm/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js.map +1 -1
- package/esm/AlignmentsTrack/index.d.ts +1 -1
- package/esm/AlignmentsTrack/index.js +16 -6
- package/esm/AlignmentsTrack/index.js.map +1 -1
- package/esm/BamAdapter/BamAdapter.d.ts +7 -3
- package/esm/BamAdapter/BamAdapter.js +36 -31
- package/esm/BamAdapter/BamAdapter.js.map +1 -1
- package/esm/BamAdapter/BamSlightlyLazyFeature.js +1 -0
- package/esm/BamAdapter/BamSlightlyLazyFeature.js.map +1 -1
- package/esm/BamAdapter/MismatchParser.d.ts +2 -2
- package/esm/BamAdapter/MismatchParser.js +4 -7
- package/esm/BamAdapter/MismatchParser.js.map +1 -1
- package/esm/BamAdapter/configSchema.d.ts +2 -2
- package/esm/BamAdapter/configSchema.js +27 -2
- package/esm/BamAdapter/configSchema.js.map +1 -1
- package/esm/BamAdapter/index.js +7 -5
- package/esm/BamAdapter/index.js.map +1 -1
- package/esm/CramAdapter/CramAdapter.d.ts +13 -7
- package/esm/CramAdapter/CramAdapter.js +56 -61
- package/esm/CramAdapter/CramAdapter.js.map +1 -1
- package/esm/CramAdapter/CramSlightlyLazyFeature.d.ts +15 -23
- package/esm/CramAdapter/CramSlightlyLazyFeature.js +10 -217
- package/esm/CramAdapter/CramSlightlyLazyFeature.js.map +1 -1
- package/esm/CramAdapter/CramTestAdapters.d.ts +1 -1
- package/esm/CramAdapter/CramTestAdapters.js +1 -1
- package/esm/CramAdapter/CramTestAdapters.js.map +1 -1
- package/esm/CramAdapter/configSchema.d.ts +2 -3
- package/esm/CramAdapter/configSchema.js +44 -22
- package/esm/CramAdapter/configSchema.js.map +1 -1
- package/esm/CramAdapter/index.js +8 -6
- package/esm/CramAdapter/index.js.map +1 -1
- package/esm/CramAdapter/util.d.ts +18 -0
- package/esm/CramAdapter/util.js +236 -0
- package/esm/CramAdapter/util.js.map +1 -0
- package/esm/HtsgetBamAdapter/HtsgetBamAdapter.d.ts +5 -2
- package/esm/HtsgetBamAdapter/HtsgetBamAdapter.js +15 -20
- package/esm/HtsgetBamAdapter/HtsgetBamAdapter.js.map +1 -1
- package/esm/HtsgetBamAdapter/configSchema.d.ts +2 -2
- package/esm/HtsgetBamAdapter/configSchema.js +20 -3
- package/esm/HtsgetBamAdapter/configSchema.js.map +1 -1
- package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +1 -1
- package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map +1 -1
- package/esm/LinearAlignmentsDisplay/models/configSchema.d.ts +2 -2
- package/esm/LinearAlignmentsDisplay/models/configSchema.js +23 -6
- package/esm/LinearAlignmentsDisplay/models/configSchema.js.map +1 -1
- package/esm/LinearAlignmentsDisplay/models/model.d.ts +77 -10
- package/esm/LinearAlignmentsDisplay/models/model.js +102 -9
- package/esm/LinearAlignmentsDisplay/models/model.js.map +1 -1
- package/esm/LinearPileupDisplay/configSchema.d.ts +4 -4
- package/esm/LinearPileupDisplay/configSchema.js +22 -5
- package/esm/LinearPileupDisplay/configSchema.js.map +1 -1
- package/esm/LinearPileupDisplay/index.d.ts +3 -0
- package/esm/LinearPileupDisplay/index.js +1 -0
- package/esm/LinearPileupDisplay/index.js.map +1 -1
- package/esm/LinearPileupDisplay/model.d.ts +100 -6
- package/esm/LinearPileupDisplay/model.js +611 -503
- package/esm/LinearPileupDisplay/model.js.map +1 -1
- package/esm/LinearSNPCoverageDisplay/components/Tooltip.d.ts +1 -1
- package/esm/LinearSNPCoverageDisplay/models/configSchema.js +33 -4
- package/esm/LinearSNPCoverageDisplay/models/configSchema.js.map +1 -1
- package/esm/LinearSNPCoverageDisplay/models/model.d.ts +87 -4
- package/esm/LinearSNPCoverageDisplay/models/model.js +240 -159
- package/esm/LinearSNPCoverageDisplay/models/model.js.map +1 -1
- package/esm/PileupRPC/rpcMethods.d.ts +1 -1
- package/esm/PileupRPC/rpcMethods.js +12 -7
- package/esm/PileupRPC/rpcMethods.js.map +1 -1
- package/esm/PileupRenderer/PileupLayoutSession.d.ts +1 -1
- package/esm/PileupRenderer/PileupRenderer.d.ts +1 -1
- package/esm/PileupRenderer/PileupRenderer.js +37 -34
- package/esm/PileupRenderer/PileupRenderer.js.map +1 -1
- package/esm/PileupRenderer/configSchema.d.ts +2 -2
- package/esm/PileupRenderer/configSchema.js +37 -2
- package/esm/PileupRenderer/configSchema.js.map +1 -1
- package/esm/PileupRenderer/index.js +8 -6
- package/esm/PileupRenderer/index.js.map +1 -1
- package/esm/SNPCoverageAdapter/configSchema.d.ts +2 -3
- package/esm/SNPCoverageAdapter/configSchema.js +15 -4
- package/esm/SNPCoverageAdapter/configSchema.js.map +1 -1
- package/esm/SNPCoverageAdapter/index.d.ts +1 -2
- package/esm/SNPCoverageAdapter/index.js +17 -15
- package/esm/SNPCoverageAdapter/index.js.map +1 -1
- package/esm/SNPCoverageRenderer/configSchema.d.ts +2 -2
- package/esm/SNPCoverageRenderer/configSchema.js +21 -1
- package/esm/SNPCoverageRenderer/configSchema.js.map +1 -1
- package/esm/SNPCoverageRenderer/index.d.ts +0 -1
- package/esm/SNPCoverageRenderer/index.js +1 -3
- package/esm/SNPCoverageRenderer/index.js.map +1 -1
- package/esm/index.d.ts +3 -2
- package/esm/index.js +2 -2
- package/esm/index.js.map +1 -1
- package/package.json +4 -3
- package/src/AlignmentsFeatureDetail/AlignmentsFeatureDetail.tsx +17 -16
- package/src/AlignmentsFeatureDetail/__snapshots__/index.test.js.snap +41 -513
- package/src/AlignmentsFeatureDetail/index.test.js +6 -4
- package/src/AlignmentsTrack/index.ts +18 -12
- package/src/BamAdapter/BamAdapter.ts +42 -41
- package/src/BamAdapter/BamSlightlyLazyFeature.ts +2 -1
- package/src/BamAdapter/MismatchParser.test.ts +21 -12
- package/src/BamAdapter/MismatchParser.ts +7 -10
- package/src/BamAdapter/__snapshots__/BamAdapter.test.ts.snap +135 -135
- package/src/BamAdapter/configSchema.ts +57 -29
- package/src/BamAdapter/index.ts +7 -8
- package/src/CombinationTest.test.ts +107 -0
- package/src/CramAdapter/CramAdapter.test.ts +1 -2
- package/src/CramAdapter/CramAdapter.ts +83 -84
- package/src/CramAdapter/CramSlightlyLazyFeature.ts +18 -218
- package/src/CramAdapter/CramTestAdapters.ts +1 -1
- package/src/CramAdapter/__snapshots__/CramAdapter.test.ts.snap +31 -31
- package/src/CramAdapter/__snapshots__/util.test.ts.snap +14 -0
- package/src/CramAdapter/configSchema.ts +54 -30
- package/src/CramAdapter/index.ts +8 -9
- package/src/CramAdapter/util.test.ts +26 -0
- package/src/CramAdapter/util.ts +251 -0
- package/src/HtsgetBamAdapter/HtsgetBamAdapter.ts +14 -21
- package/src/HtsgetBamAdapter/configSchema.ts +36 -19
- package/src/LinearAlignmentsDisplay/components/AlignmentsDisplay.tsx +3 -1
- package/src/LinearAlignmentsDisplay/models/configSchema.ts +23 -10
- package/src/LinearAlignmentsDisplay/models/model.tsx +107 -11
- package/src/LinearPileupDisplay/configSchema.ts +25 -9
- package/src/LinearPileupDisplay/index.ts +5 -0
- package/src/LinearPileupDisplay/model.ts +151 -34
- package/src/LinearSNPCoverageDisplay/models/configSchema.ts +36 -9
- package/src/LinearSNPCoverageDisplay/models/model.ts +83 -4
- package/src/PileupRPC/rpcMethods.ts +15 -20
- package/src/PileupRenderer/{PileupRenderer.tsx → PileupRenderer.ts} +53 -63
- package/src/PileupRenderer/configSchema.ts +39 -2
- package/src/PileupRenderer/index.ts +8 -9
- package/src/SNPCoverageAdapter/configSchema.ts +21 -12
- package/src/SNPCoverageAdapter/index.ts +17 -18
- package/src/SNPCoverageRenderer/configSchema.ts +23 -1
- package/src/SNPCoverageRenderer/index.ts +1 -8
- package/src/__snapshots__/index.test.ts.snap +1 -1
- package/src/index.ts +11 -4
- package/src/declare.d.ts +0 -1
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d="M19 5v14H5V5h14m0-2H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2z"
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class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
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name="read unmapped"
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data-testid="CheckBoxOutlineBlankIcon"
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d="M19 5v14H5V5h14m0-2H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2z"
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/>
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read unmapped
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class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
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487
|
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>
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488
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<span
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489
|
-
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
|
|
490
|
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491
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|
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|
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494
|
-
name="mate unmapped"
|
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495
|
-
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496
|
-
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|
|
497
|
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|
498
|
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<svg
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|
499
|
-
aria-hidden="true"
|
|
500
|
-
class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
|
|
501
|
-
data-testid="CheckBoxOutlineBlankIcon"
|
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502
|
-
focusable="false"
|
|
503
|
-
viewBox="0 0 24 24"
|
|
504
|
-
>
|
|
505
|
-
<path
|
|
506
|
-
d="M19 5v14H5V5h14m0-2H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2z"
|
|
507
|
-
/>
|
|
508
|
-
</svg>
|
|
509
|
-
<span
|
|
510
|
-
class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
|
|
511
|
-
/>
|
|
512
|
-
</span>
|
|
513
|
-
<span
|
|
514
|
-
class="MuiTypography-root MuiTypography-body1 MuiFormControlLabel-label css-ahj2mt-MuiTypography-root"
|
|
515
|
-
>
|
|
516
|
-
mate unmapped
|
|
517
|
-
</span>
|
|
518
|
-
</label>
|
|
519
|
-
<label
|
|
520
|
-
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
|
|
521
|
-
>
|
|
522
|
-
<span
|
|
523
|
-
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
|
|
524
|
-
>
|
|
525
|
-
<input
|
|
526
|
-
class="PrivateSwitchBase-input css-1m9pwf3"
|
|
527
|
-
data-indeterminate="false"
|
|
528
|
-
name="read reverse strand"
|
|
529
|
-
readonly=""
|
|
530
|
-
type="checkbox"
|
|
531
|
-
/>
|
|
532
|
-
<svg
|
|
533
|
-
aria-hidden="true"
|
|
534
|
-
class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
|
|
535
|
-
data-testid="CheckBoxOutlineBlankIcon"
|
|
536
|
-
focusable="false"
|
|
537
|
-
viewBox="0 0 24 24"
|
|
538
|
-
>
|
|
539
|
-
<path
|
|
540
|
-
d="M19 5v14H5V5h14m0-2H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2z"
|
|
541
|
-
/>
|
|
542
|
-
</svg>
|
|
543
|
-
<span
|
|
544
|
-
class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
|
|
545
|
-
/>
|
|
546
|
-
</span>
|
|
547
|
-
<span
|
|
548
|
-
class="MuiTypography-root MuiTypography-body1 MuiFormControlLabel-label css-ahj2mt-MuiTypography-root"
|
|
549
|
-
>
|
|
550
|
-
read reverse strand
|
|
551
|
-
</span>
|
|
552
|
-
</label>
|
|
553
|
-
<label
|
|
554
|
-
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
|
|
555
|
-
>
|
|
556
|
-
<span
|
|
557
|
-
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
|
|
558
|
-
>
|
|
559
|
-
<input
|
|
560
|
-
class="PrivateSwitchBase-input css-1m9pwf3"
|
|
561
|
-
data-indeterminate="false"
|
|
562
|
-
name="mate reverse strand"
|
|
563
|
-
readonly=""
|
|
564
|
-
type="checkbox"
|
|
565
|
-
/>
|
|
566
|
-
<svg
|
|
567
|
-
aria-hidden="true"
|
|
568
|
-
class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
|
|
569
|
-
data-testid="CheckBoxOutlineBlankIcon"
|
|
570
|
-
focusable="false"
|
|
571
|
-
viewBox="0 0 24 24"
|
|
572
|
-
>
|
|
573
|
-
<path
|
|
574
|
-
d="M19 5v14H5V5h14m0-2H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2z"
|
|
575
|
-
/>
|
|
576
|
-
</svg>
|
|
577
|
-
<span
|
|
578
|
-
class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
|
|
579
|
-
/>
|
|
580
|
-
</span>
|
|
581
|
-
<span
|
|
582
|
-
class="MuiTypography-root MuiTypography-body1 MuiFormControlLabel-label css-ahj2mt-MuiTypography-root"
|
|
583
|
-
>
|
|
584
|
-
mate reverse strand
|
|
585
|
-
</span>
|
|
586
|
-
</label>
|
|
587
|
-
<label
|
|
588
|
-
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
|
|
589
|
-
>
|
|
590
|
-
<span
|
|
591
|
-
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
|
|
592
|
-
>
|
|
593
|
-
<input
|
|
594
|
-
class="PrivateSwitchBase-input css-1m9pwf3"
|
|
595
|
-
data-indeterminate="false"
|
|
596
|
-
name="first in pair"
|
|
597
|
-
readonly=""
|
|
598
|
-
type="checkbox"
|
|
599
|
-
/>
|
|
600
|
-
<svg
|
|
601
|
-
aria-hidden="true"
|
|
602
|
-
class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
|
|
603
|
-
data-testid="CheckBoxOutlineBlankIcon"
|
|
604
|
-
focusable="false"
|
|
605
|
-
viewBox="0 0 24 24"
|
|
606
|
-
>
|
|
607
|
-
<path
|
|
608
|
-
d="M19 5v14H5V5h14m0-2H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2z"
|
|
609
|
-
/>
|
|
610
|
-
</svg>
|
|
611
|
-
<span
|
|
612
|
-
class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
|
|
613
|
-
/>
|
|
614
|
-
</span>
|
|
615
|
-
<span
|
|
616
|
-
class="MuiTypography-root MuiTypography-body1 MuiFormControlLabel-label css-ahj2mt-MuiTypography-root"
|
|
617
|
-
>
|
|
618
|
-
first in pair
|
|
619
|
-
</span>
|
|
620
|
-
</label>
|
|
621
|
-
<label
|
|
622
|
-
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
|
|
623
|
-
>
|
|
624
|
-
<span
|
|
625
|
-
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
|
|
626
|
-
>
|
|
627
|
-
<input
|
|
628
|
-
class="PrivateSwitchBase-input css-1m9pwf3"
|
|
629
|
-
data-indeterminate="false"
|
|
630
|
-
name="second in pair"
|
|
631
|
-
readonly=""
|
|
632
|
-
type="checkbox"
|
|
633
|
-
/>
|
|
634
|
-
<svg
|
|
635
|
-
aria-hidden="true"
|
|
636
|
-
class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
|
|
637
|
-
data-testid="CheckBoxOutlineBlankIcon"
|
|
638
|
-
focusable="false"
|
|
639
|
-
viewBox="0 0 24 24"
|
|
640
|
-
>
|
|
641
|
-
<path
|
|
642
|
-
d="M19 5v14H5V5h14m0-2H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2z"
|
|
643
|
-
/>
|
|
644
|
-
</svg>
|
|
645
|
-
<span
|
|
646
|
-
class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
|
|
647
|
-
/>
|
|
648
|
-
</span>
|
|
649
|
-
<span
|
|
650
|
-
class="MuiTypography-root MuiTypography-body1 MuiFormControlLabel-label css-ahj2mt-MuiTypography-root"
|
|
651
|
-
>
|
|
652
|
-
second in pair
|
|
653
|
-
</span>
|
|
654
|
-
</label>
|
|
655
|
-
<label
|
|
656
|
-
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
|
|
657
|
-
>
|
|
658
|
-
<span
|
|
659
|
-
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
|
|
660
|
-
>
|
|
661
|
-
<input
|
|
662
|
-
class="PrivateSwitchBase-input css-1m9pwf3"
|
|
663
|
-
data-indeterminate="false"
|
|
664
|
-
name="not primary alignment"
|
|
665
|
-
readonly=""
|
|
666
|
-
type="checkbox"
|
|
667
|
-
/>
|
|
668
|
-
<svg
|
|
669
|
-
aria-hidden="true"
|
|
670
|
-
class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
|
|
671
|
-
data-testid="CheckBoxOutlineBlankIcon"
|
|
672
|
-
focusable="false"
|
|
673
|
-
viewBox="0 0 24 24"
|
|
674
|
-
>
|
|
675
|
-
<path
|
|
676
|
-
d="M19 5v14H5V5h14m0-2H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2z"
|
|
677
|
-
/>
|
|
678
|
-
</svg>
|
|
679
|
-
<span
|
|
680
|
-
class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
|
|
681
|
-
/>
|
|
682
|
-
</span>
|
|
683
|
-
<span
|
|
684
|
-
class="MuiTypography-root MuiTypography-body1 MuiFormControlLabel-label css-ahj2mt-MuiTypography-root"
|
|
685
|
-
>
|
|
686
|
-
not primary alignment
|
|
687
|
-
</span>
|
|
688
|
-
</label>
|
|
689
|
-
<label
|
|
690
|
-
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
|
|
691
|
-
>
|
|
692
|
-
<span
|
|
693
|
-
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
|
|
694
|
-
>
|
|
695
|
-
<input
|
|
696
|
-
class="PrivateSwitchBase-input css-1m9pwf3"
|
|
697
|
-
data-indeterminate="false"
|
|
698
|
-
name="read fails platform/vendor quality checks"
|
|
699
|
-
readonly=""
|
|
700
|
-
type="checkbox"
|
|
701
|
-
/>
|
|
702
|
-
<svg
|
|
703
|
-
aria-hidden="true"
|
|
704
|
-
class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
|
|
705
|
-
data-testid="CheckBoxOutlineBlankIcon"
|
|
706
|
-
focusable="false"
|
|
707
|
-
viewBox="0 0 24 24"
|
|
708
|
-
>
|
|
709
|
-
<path
|
|
710
|
-
d="M19 5v14H5V5h14m0-2H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2z"
|
|
711
|
-
/>
|
|
712
|
-
</svg>
|
|
713
|
-
<span
|
|
714
|
-
class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
|
|
715
|
-
/>
|
|
716
|
-
</span>
|
|
717
|
-
<span
|
|
718
|
-
class="MuiTypography-root MuiTypography-body1 MuiFormControlLabel-label css-ahj2mt-MuiTypography-root"
|
|
719
|
-
>
|
|
720
|
-
read fails platform/vendor quality checks
|
|
721
|
-
</span>
|
|
722
|
-
</label>
|
|
723
|
-
<label
|
|
724
|
-
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
|
|
725
|
-
>
|
|
726
|
-
<span
|
|
727
|
-
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
|
|
728
|
-
>
|
|
729
|
-
<input
|
|
730
|
-
class="PrivateSwitchBase-input css-1m9pwf3"
|
|
731
|
-
data-indeterminate="false"
|
|
732
|
-
name="read is PCR or optical duplicate"
|
|
733
|
-
readonly=""
|
|
734
|
-
type="checkbox"
|
|
735
|
-
/>
|
|
736
|
-
<svg
|
|
737
|
-
aria-hidden="true"
|
|
738
|
-
class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
|
|
739
|
-
data-testid="CheckBoxOutlineBlankIcon"
|
|
740
|
-
focusable="false"
|
|
741
|
-
viewBox="0 0 24 24"
|
|
742
|
-
>
|
|
743
|
-
<path
|
|
744
|
-
d="M19 5v14H5V5h14m0-2H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2z"
|
|
745
|
-
/>
|
|
746
|
-
</svg>
|
|
747
|
-
<span
|
|
748
|
-
class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
|
|
749
|
-
/>
|
|
750
|
-
</span>
|
|
751
|
-
<span
|
|
752
|
-
class="MuiTypography-root MuiTypography-body1 MuiFormControlLabel-label css-ahj2mt-MuiTypography-root"
|
|
753
|
-
>
|
|
754
|
-
read is PCR or optical duplicate
|
|
755
|
-
</span>
|
|
756
|
-
</label>
|
|
757
|
-
<label
|
|
758
|
-
class="MuiFormControlLabel-root MuiFormControlLabel-labelPlacementEnd css-j204z7-MuiFormControlLabel-root"
|
|
759
|
-
>
|
|
760
|
-
<span
|
|
761
|
-
class="MuiButtonBase-root MuiCheckbox-root MuiCheckbox-colorPrimary PrivateSwitchBase-root MuiCheckbox-root MuiCheckbox-colorPrimary MuiCheckbox-root MuiCheckbox-colorPrimary tss-18u5im4-compact css-12wnr2w-MuiButtonBase-root-MuiCheckbox-root"
|
|
762
|
-
>
|
|
763
|
-
<input
|
|
764
|
-
class="PrivateSwitchBase-input css-1m9pwf3"
|
|
765
|
-
data-indeterminate="false"
|
|
766
|
-
name="supplementary alignment"
|
|
767
|
-
readonly=""
|
|
768
|
-
type="checkbox"
|
|
769
|
-
/>
|
|
770
|
-
<svg
|
|
771
|
-
aria-hidden="true"
|
|
772
|
-
class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
|
|
773
|
-
data-testid="CheckBoxOutlineBlankIcon"
|
|
774
|
-
focusable="false"
|
|
775
|
-
viewBox="0 0 24 24"
|
|
776
|
-
>
|
|
777
|
-
<path
|
|
778
|
-
d="M19 5v14H5V5h14m0-2H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2z"
|
|
779
|
-
/>
|
|
780
|
-
</svg>
|
|
781
|
-
<span
|
|
782
|
-
class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
|
|
783
|
-
/>
|
|
784
|
-
</span>
|
|
785
|
-
<span
|
|
786
|
-
class="MuiTypography-root MuiTypography-body1 MuiFormControlLabel-label css-ahj2mt-MuiTypography-root"
|
|
787
|
-
>
|
|
788
|
-
supplementary alignment
|
|
789
|
-
</span>
|
|
790
|
-
</label>
|
|
791
|
-
</div>
|
|
792
|
-
</div>
|
|
793
|
-
</div>
|
|
794
|
-
</div>
|
|
795
|
-
</div>
|
|
796
|
-
</div>
|
|
797
|
-
</div>
|
|
798
326
|
</div>
|
|
799
327
|
`;
|