@jbrowse/core 3.7.0 → 4.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (947) hide show
  1. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +32 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +13 -0
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +43 -0
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +8 -0
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +7 -0
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +2 -0
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +17 -0
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +2 -0
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +7 -0
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +20 -0
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +2 -0
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +24 -0
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +57 -0
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +11 -0
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +42 -0
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +24 -0
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +2 -0
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +14 -0
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +14 -0
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +22 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +24 -0
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +7 -0
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.js +1 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +26 -0
  26. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +10 -0
  27. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +41 -0
  28. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +7 -0
  29. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +44 -0
  30. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +7 -0
  31. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +34 -0
  32. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +8 -0
  33. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +26 -0
  34. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +3 -0
  35. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +29 -0
  36. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +6 -0
  37. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +11 -0
  38. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +8 -0
  39. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +40 -0
  40. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +8 -0
  41. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +105 -0
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +5 -0
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +64 -0
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +6 -0
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +48 -0
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.d.ts +1 -0
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -0
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +31 -0
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +83 -0
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +16 -0
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +83 -0
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +8 -0
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +16 -0
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +10 -0
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +52 -0
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +9 -0
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +21 -0
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +10 -0
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +22 -0
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +80 -0
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +583 -0
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +141 -0
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +1116 -0
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -0
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.js +1 -0
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +13 -0
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +73 -0
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +42 -0
  69. package/esm/BaseFeatureWidget/configSchema.d.ts +2 -0
  70. package/esm/BaseFeatureWidget/configSchema.js +3 -0
  71. package/esm/BaseFeatureWidget/index.d.ts +2 -0
  72. package/esm/BaseFeatureWidget/index.js +2 -0
  73. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +101 -0
  74. package/esm/BaseFeatureWidget/stateModelFactory.js +96 -0
  75. package/esm/BaseFeatureWidget/types.d.ts +22 -0
  76. package/esm/BaseFeatureWidget/types.js +1 -0
  77. package/esm/BaseFeatureWidget/util.d.ts +51 -0
  78. package/esm/BaseFeatureWidget/util.js +95 -0
  79. package/esm/CorePlugin.d.ts +6 -0
  80. package/esm/CorePlugin.js +24 -0
  81. package/esm/PhasedScheduler.js +25 -0
  82. package/esm/Plugin.d.ts +13 -0
  83. package/esm/Plugin.js +9 -0
  84. package/esm/PluginLoader.d.ts +64 -0
  85. package/esm/PluginLoader.js +164 -0
  86. package/esm/PluginManager.d.ts +125 -0
  87. package/esm/PluginManager.js +414 -0
  88. package/esm/ReExports/BaseFeatureDetails.js +9 -0
  89. package/esm/ReExports/DataGrid.js +1 -0
  90. package/esm/ReExports/MuiDataGridReExports.js +131 -0
  91. package/esm/ReExports/MuiReExports.d.ts +134 -0
  92. package/esm/ReExports/MuiReExports.js +115 -0
  93. package/esm/ReExports/index.d.ts +1 -0
  94. package/esm/ReExports/index.js +1 -0
  95. package/esm/ReExports/lazify.js +10 -0
  96. package/esm/ReExports/list.js +275 -0
  97. package/esm/ReExports/modules.js +149 -0
  98. package/esm/TextSearch/BaseResults.d.ts +46 -0
  99. package/esm/TextSearch/BaseResults.js +67 -0
  100. package/esm/TextSearch/TextSearchManager.d.ts +48 -0
  101. package/esm/TextSearch/TextSearchManager.js +77 -0
  102. package/esm/assemblyManager/assembly.d.ts +75 -0
  103. package/esm/assemblyManager/assembly.js +328 -0
  104. package/esm/assemblyManager/assemblyConfigSchema.d.ts +27 -0
  105. package/esm/assemblyManager/assemblyConfigSchema.js +51 -0
  106. package/esm/assemblyManager/assemblyManager.d.ts +528 -0
  107. package/esm/assemblyManager/assemblyManager.js +131 -0
  108. package/esm/assemblyManager/index.d.ts +3 -0
  109. package/esm/assemblyManager/index.js +2 -0
  110. package/esm/configuration/configurationSchema.d.ts +37 -0
  111. package/esm/configuration/configurationSchema.js +230 -0
  112. package/esm/configuration/configurationSlot.d.ts +33 -0
  113. package/esm/configuration/configurationSlot.js +239 -0
  114. package/esm/configuration/index.d.ts +3 -0
  115. package/esm/configuration/index.js +2 -0
  116. package/esm/configuration/types.d.ts +14 -0
  117. package/esm/configuration/types.js +1 -0
  118. package/esm/configuration/util.d.ts +10 -0
  119. package/esm/configuration/util.js +123 -0
  120. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +16 -0
  121. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +31 -0
  122. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +24 -0
  123. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +68 -0
  124. package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +18 -0
  125. package/esm/data_adapters/BaseAdapter/BaseOptions.js +1 -0
  126. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +10 -0
  127. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.js +1 -0
  128. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +11 -0
  129. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +12 -0
  130. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +6 -0
  131. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.js +1 -0
  132. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +6 -0
  133. package/esm/data_adapters/BaseAdapter/RegionsAdapter.js +1 -0
  134. package/esm/data_adapters/BaseAdapter/index.d.ts +13 -0
  135. package/esm/data_adapters/BaseAdapter/index.js +5 -0
  136. package/esm/data_adapters/BaseAdapter/stats.d.ts +10 -0
  137. package/esm/data_adapters/BaseAdapter/stats.js +48 -0
  138. package/esm/data_adapters/BaseAdapter/types.d.ts +23 -0
  139. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  140. package/esm/data_adapters/BaseAdapter/util.d.ts +12 -0
  141. package/esm/data_adapters/BaseAdapter/util.js +15 -0
  142. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +6 -0
  143. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +28 -0
  144. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +9 -0
  145. package/esm/data_adapters/CytobandAdapter/configSchema.js +24 -0
  146. package/esm/data_adapters/CytobandAdapter/index.d.ts +2 -0
  147. package/esm/data_adapters/CytobandAdapter/index.js +12 -0
  148. package/esm/data_adapters/dataAdapterCache.d.ts +14 -0
  149. package/esm/data_adapters/dataAdapterCache.js +54 -0
  150. package/esm/data_adapters/util.js +4 -0
  151. package/esm/pluggableElementTypes/AdapterType.d.ts +25 -0
  152. package/esm/pluggableElementTypes/AdapterType.js +17 -0
  153. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  154. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +10 -0
  155. package/esm/pluggableElementTypes/ConnectionType.d.ts +20 -0
  156. package/esm/pluggableElementTypes/ConnectionType.js +16 -0
  157. package/esm/pluggableElementTypes/DisplayType.d.ts +30 -0
  158. package/esm/pluggableElementTypes/DisplayType.js +20 -0
  159. package/esm/pluggableElementTypes/GlyphType.d.ts +43 -0
  160. package/esm/pluggableElementTypes/GlyphType.js +18 -0
  161. package/esm/pluggableElementTypes/InternetAccountType.d.ts +12 -0
  162. package/esm/pluggableElementTypes/InternetAccountType.js +10 -0
  163. package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
  164. package/esm/pluggableElementTypes/RpcMethodType.d.ts +19 -0
  165. package/esm/pluggableElementTypes/RpcMethodType.js +88 -0
  166. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +11 -0
  167. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +28 -0
  168. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +18 -0
  169. package/esm/pluggableElementTypes/TextSearchAdapterType.js +15 -0
  170. package/esm/pluggableElementTypes/TrackType.d.ts +16 -0
  171. package/esm/pluggableElementTypes/TrackType.js +14 -0
  172. package/esm/pluggableElementTypes/ViewType.d.ts +29 -0
  173. package/esm/pluggableElementTypes/ViewType.js +18 -0
  174. package/esm/pluggableElementTypes/WidgetType.d.ts +27 -0
  175. package/esm/pluggableElementTypes/WidgetType.js +18 -0
  176. package/esm/pluggableElementTypes/index.d.ts +27 -0
  177. package/esm/pluggableElementTypes/index.js +14 -0
  178. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +29 -0
  179. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +35 -0
  180. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +180 -0
  181. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +104 -0
  182. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +74 -0
  183. package/esm/pluggableElementTypes/models/BaseTrackModel.js +203 -0
  184. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +52 -0
  185. package/esm/pluggableElementTypes/models/BaseViewModel.js +42 -0
  186. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +86 -0
  187. package/esm/pluggableElementTypes/models/InternetAccountModel.js +151 -0
  188. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +16 -0
  189. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -0
  190. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +27 -0
  191. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +32 -0
  192. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +87 -0
  193. package/esm/pluggableElementTypes/models/baseTrackConfig.js +134 -0
  194. package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +11 -0
  195. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +158 -0
  196. package/esm/pluggableElementTypes/models/index.d.ts +14 -0
  197. package/esm/pluggableElementTypes/models/index.js +8 -0
  198. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.d.ts +4 -0
  199. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +9 -0
  200. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +5 -0
  201. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +17 -0
  202. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +7 -0
  203. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +108 -0
  204. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +5 -0
  205. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +91 -0
  206. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +11 -0
  207. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.js +1 -0
  208. package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +52 -0
  209. package/esm/pluggableElementTypes/renderers/BoxRendererType.js +78 -0
  210. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +4 -0
  211. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +4 -0
  212. package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +58 -0
  213. package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +77 -0
  214. package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +31 -0
  215. package/esm/pluggableElementTypes/renderers/LayoutSession.js +37 -0
  216. package/esm/pluggableElementTypes/renderers/RendererType.d.ts +28 -0
  217. package/esm/pluggableElementTypes/renderers/RendererType.js +20 -0
  218. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +57 -0
  219. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +113 -0
  220. package/esm/pluggableElementTypes/renderers/index.d.ts +6 -0
  221. package/esm/pluggableElementTypes/renderers/index.js +6 -0
  222. package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +30 -0
  223. package/esm/pluggableElementTypes/renderers/util.d.ts +3 -0
  224. package/esm/pluggableElementTypes/renderers/util.js +14 -0
  225. package/esm/rpc/BaseRpcDriver.d.ts +40 -0
  226. package/esm/rpc/BaseRpcDriver.js +116 -0
  227. package/esm/rpc/MainThreadRpcDriver.d.ts +14 -0
  228. package/esm/rpc/MainThreadRpcDriver.js +33 -0
  229. package/esm/rpc/RpcManager.d.ts +35 -0
  230. package/esm/rpc/RpcManager.js +63 -0
  231. package/esm/rpc/WebWorkerRpcDriver.d.ts +31 -0
  232. package/esm/rpc/WebWorkerRpcDriver.js +77 -0
  233. package/esm/rpc/baseRpcConfig.d.ts +8 -0
  234. package/esm/rpc/baseRpcConfig.js +10 -0
  235. package/esm/rpc/configSchema.d.ts +9 -0
  236. package/esm/rpc/configSchema.js +22 -0
  237. package/esm/rpc/coreRpcMethods.d.ts +12 -0
  238. package/esm/rpc/coreRpcMethods.js +12 -0
  239. package/esm/rpc/mainThreadRpcConfig.d.ts +8 -0
  240. package/esm/rpc/mainThreadRpcConfig.js +8 -0
  241. package/esm/rpc/methods/CoreFreeResources.d.ts +6 -0
  242. package/esm/rpc/methods/CoreFreeResources.js +14 -0
  243. package/esm/rpc/methods/CoreGetExportData.d.ts +19 -0
  244. package/esm/rpc/methods/CoreGetExportData.js +18 -0
  245. package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +17 -0
  246. package/esm/rpc/methods/CoreGetFeatureDensityStats.js +25 -0
  247. package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +11 -0
  248. package/esm/rpc/methods/CoreGetFeatureDetails.js +24 -0
  249. package/esm/rpc/methods/CoreGetFeatures.d.ts +18 -0
  250. package/esm/rpc/methods/CoreGetFeatures.js +31 -0
  251. package/esm/rpc/methods/CoreGetFileInfo.d.ts +9 -0
  252. package/esm/rpc/methods/CoreGetFileInfo.js +15 -0
  253. package/esm/rpc/methods/CoreGetMetadata.d.ts +9 -0
  254. package/esm/rpc/methods/CoreGetMetadata.js +15 -0
  255. package/esm/rpc/methods/CoreGetRefNames.d.ts +10 -0
  256. package/esm/rpc/methods/CoreGetRefNames.js +19 -0
  257. package/esm/rpc/methods/CoreGetRegions.d.ts +8 -0
  258. package/esm/rpc/methods/CoreGetRegions.js +15 -0
  259. package/esm/rpc/methods/CoreGetSequence.d.ts +13 -0
  260. package/esm/rpc/methods/CoreGetSequence.js +17 -0
  261. package/esm/rpc/methods/CoreRender.d.ts +14 -0
  262. package/esm/rpc/methods/CoreRender.js +35 -0
  263. package/esm/rpc/methods/CoreSaveFeatureData.d.ts +16 -0
  264. package/esm/rpc/methods/CoreSaveFeatureData.js +32 -0
  265. package/esm/rpc/methods/util.d.ts +15 -0
  266. package/esm/rpc/methods/util.js +7 -0
  267. package/esm/rpc/webWorkerRpcConfig.d.ts +8 -0
  268. package/esm/rpc/webWorkerRpcConfig.js +8 -0
  269. package/esm/ui/AppLogo.d.ts +7 -0
  270. package/esm/ui/AppLogo.js +10 -0
  271. package/esm/ui/AssemblySelector.d.ts +13 -0
  272. package/esm/ui/AssemblySelector.js +39 -0
  273. package/esm/ui/BaseTooltip.js +42 -0
  274. package/esm/ui/CascadingMenu.d.ts +30 -0
  275. package/esm/ui/CascadingMenu.js +48 -0
  276. package/esm/ui/CascadingMenuButton.d.ts +26 -0
  277. package/esm/ui/CascadingMenuButton.js +24 -0
  278. package/esm/ui/CascadingMenuHelpDialog.d.ts +5 -0
  279. package/esm/ui/CascadingMenuHelpDialog.js +10 -0
  280. package/esm/ui/CascadingMenuHelpIconButton.d.ts +5 -0
  281. package/esm/ui/CascadingMenuHelpIconButton.js +15 -0
  282. package/esm/ui/ColorPicker.js +62 -0
  283. package/esm/ui/ConfirmDialog.js +13 -0
  284. package/esm/ui/DataGridFlexContainer.d.ts +5 -0
  285. package/esm/ui/DataGridFlexContainer.js +12 -0
  286. package/esm/ui/Dialog.d.ts +7 -0
  287. package/esm/ui/Dialog.js +45 -0
  288. package/esm/ui/DraggableDialog.js +27 -0
  289. package/esm/ui/DropDownMenu.d.ts +6 -0
  290. package/esm/ui/DropDownMenu.js +24 -0
  291. package/esm/ui/EditableTypography.js +60 -0
  292. package/esm/ui/ErrorBoundary.d.ts +17 -0
  293. package/esm/ui/ErrorBoundary.js +16 -0
  294. package/esm/ui/ErrorMessage.js +56 -0
  295. package/esm/ui/ErrorMessageStackTraceContents.d.ts +4 -0
  296. package/esm/ui/ErrorMessageStackTraceContents.js +25 -0
  297. package/esm/ui/ErrorMessageStackTraceDialog.js +108 -0
  298. package/esm/ui/ExternalLink.js +7 -0
  299. package/esm/ui/FactoryResetDialog.js +18 -0
  300. package/esm/ui/FatalErrorDialog.js +18 -0
  301. package/esm/ui/FileSelector/FileSelector.d.ts +11 -0
  302. package/esm/ui/FileSelector/FileSelector.js +52 -0
  303. package/esm/ui/FileSelector/LocalFileChooser.d.ts +6 -0
  304. package/esm/ui/FileSelector/LocalFileChooser.js +39 -0
  305. package/esm/ui/FileSelector/LocationInput.d.ts +9 -0
  306. package/esm/ui/FileSelector/LocationInput.js +15 -0
  307. package/esm/ui/FileSelector/SourceTypeSelector.d.ts +9 -0
  308. package/esm/ui/FileSelector/SourceTypeSelector.js +38 -0
  309. package/esm/ui/FileSelector/UrlChooser.d.ts +8 -0
  310. package/esm/ui/FileSelector/UrlChooser.js +17 -0
  311. package/esm/ui/FileSelector/index.d.ts +1 -0
  312. package/esm/ui/FileSelector/index.js +1 -0
  313. package/esm/ui/FileSelector/useInternetAccounts.d.ts +178 -0
  314. package/esm/ui/FileSelector/useInternetAccounts.js +18 -0
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  671. package/pluggableElementTypes/renderers/BoxRendererType.js +0 -102
  672. package/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -26
  673. package/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -34
  674. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.d.ts +0 -38
  675. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +0 -65
  676. package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -51
  677. package/pluggableElementTypes/renderers/FeatureRendererType.js +0 -85
  678. package/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -25
  679. package/pluggableElementTypes/renderers/LayoutSession.js +0 -42
  680. package/pluggableElementTypes/renderers/RendererType.d.ts +0 -25
  681. package/pluggableElementTypes/renderers/RendererType.js +0 -23
  682. package/pluggableElementTypes/renderers/RpcRenderedSvgGroup.d.ts +0 -9
  683. package/pluggableElementTypes/renderers/RpcRenderedSvgGroup.js +0 -9
  684. package/pluggableElementTypes/renderers/ServerSideRenderedContent.d.ts +0 -6
  685. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +0 -8
  686. package/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -49
  687. package/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -81
  688. package/pluggableElementTypes/renderers/index.d.ts +0 -7
  689. package/pluggableElementTypes/renderers/index.js +0 -20
  690. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +0 -32
  691. package/rpc/BaseRpcDriver.d.ts +0 -43
  692. package/rpc/BaseRpcDriver.js +0 -113
  693. package/rpc/MainThreadRpcDriver.d.ts +0 -14
  694. package/rpc/MainThreadRpcDriver.js +0 -32
  695. package/rpc/RpcManager.d.ts +0 -34
  696. package/rpc/RpcManager.js +0 -69
  697. package/rpc/WebWorkerRpcDriver.d.ts +0 -29
  698. package/rpc/WebWorkerRpcDriver.js +0 -65
  699. package/rpc/baseRpcConfig.d.ts +0 -8
  700. package/rpc/baseRpcConfig.js +0 -12
  701. package/rpc/configSchema.d.ts +0 -9
  702. package/rpc/configSchema.js +0 -27
  703. package/rpc/coreRpcMethods.d.ts +0 -9
  704. package/rpc/coreRpcMethods.js +0 -22
  705. package/rpc/mainThreadRpcConfig.d.ts +0 -8
  706. package/rpc/mainThreadRpcConfig.js +0 -13
  707. package/rpc/methods/CoreFreeResources.d.ts +0 -6
  708. package/rpc/methods/CoreFreeResources.js +0 -23
  709. package/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
  710. package/rpc/methods/CoreGetFeatureDensityStats.js +0 -36
  711. package/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
  712. package/rpc/methods/CoreGetFeatureDetails.js +0 -38
  713. package/rpc/methods/CoreGetFeatures.d.ts +0 -18
  714. package/rpc/methods/CoreGetFeatures.js +0 -40
  715. package/rpc/methods/CoreGetFileInfo.d.ts +0 -9
  716. package/rpc/methods/CoreGetFileInfo.js +0 -24
  717. package/rpc/methods/CoreGetMetadata.d.ts +0 -9
  718. package/rpc/methods/CoreGetMetadata.js +0 -24
  719. package/rpc/methods/CoreGetRefNames.d.ts +0 -9
  720. package/rpc/methods/CoreGetRefNames.js +0 -25
  721. package/rpc/methods/CoreRender.d.ts +0 -10
  722. package/rpc/methods/CoreRender.js +0 -46
  723. package/rpc/methods/util.d.ts +0 -15
  724. package/rpc/methods/util.js +0 -9
  725. package/rpc/webWorkerRpcConfig.d.ts +0 -8
  726. package/rpc/webWorkerRpcConfig.js +0 -13
  727. package/stories/JBrowseCore.stories.d.ts +0 -5
  728. package/stories/JBrowseCore.stories.js +0 -10
  729. package/stories/examples/WithSequencePanel.d.ts +0 -6
  730. package/stories/examples/WithSequencePanel.js +0 -42
  731. package/stories/examples/index.d.ts +0 -1
  732. package/stories/examples/index.js +0 -17
  733. package/stories/examples/util.d.ts +0 -33
  734. package/stories/examples/util.js +0 -235
  735. package/tsconfig.build.tsbuildinfo +0 -1
  736. package/ui/AppLogo.d.ts +0 -7
  737. package/ui/AppLogo.js +0 -12
  738. package/ui/AssemblySelector.d.ts +0 -13
  739. package/ui/AssemblySelector.js +0 -46
  740. package/ui/BaseTooltip.js +0 -46
  741. package/ui/CascadingMenu.d.ts +0 -9
  742. package/ui/CascadingMenu.js +0 -114
  743. package/ui/CascadingMenuButton.d.ts +0 -11
  744. package/ui/CascadingMenuButton.js +0 -29
  745. package/ui/ColorPicker.js +0 -101
  746. package/ui/ConfirmDialog.js +0 -18
  747. package/ui/DataGridFlexContainer.d.ts +0 -3
  748. package/ui/DataGridFlexContainer.js +0 -15
  749. package/ui/Dialog.d.ts +0 -7
  750. package/ui/Dialog.js +0 -50
  751. package/ui/DraggableDialog.js +0 -32
  752. package/ui/DropDownMenu.d.ts +0 -8
  753. package/ui/DropDownMenu.js +0 -37
  754. package/ui/EditableTypography.js +0 -65
  755. package/ui/ErrorBoundary.d.ts +0 -17
  756. package/ui/ErrorBoundary.js +0 -19
  757. package/ui/ErrorMessage.js +0 -94
  758. package/ui/ErrorMessageStackTraceDialog.js +0 -149
  759. package/ui/ExternalLink.js +0 -13
  760. package/ui/FactoryResetDialog.js +0 -24
  761. package/ui/FatalErrorDialog.js +0 -24
  762. package/ui/FileSelector/FileSelector.d.ts +0 -11
  763. package/ui/FileSelector/FileSelector.js +0 -102
  764. package/ui/FileSelector/LocalFileChooser.d.ts +0 -6
  765. package/ui/FileSelector/LocalFileChooser.js +0 -42
  766. package/ui/FileSelector/UrlChooser.d.ts +0 -8
  767. package/ui/FileSelector/UrlChooser.js +0 -19
  768. package/ui/FileSelector/index.d.ts +0 -1
  769. package/ui/FileSelector/index.js +0 -8
  770. package/ui/HoverMenu.js +0 -50
  771. package/ui/Icons.js +0 -23
  772. package/ui/LoadingEllipses.js +0 -35
  773. package/ui/Logo.js +0 -46
  774. package/ui/Menu.d.ts +0 -54
  775. package/ui/Menu.js +0 -233
  776. package/ui/MenuButton.d.ts +0 -10
  777. package/ui/MenuButton.js +0 -28
  778. package/ui/PrerenderedCanvas.d.ts +0 -10
  779. package/ui/PrerenderedCanvas.js +0 -34
  780. package/ui/RedErrorMessageBox.js +0 -19
  781. package/ui/ResizeHandle.js +0 -72
  782. package/ui/ReturnToImportFormDialog.js +0 -18
  783. package/ui/SanitizedHTML.js +0 -67
  784. package/ui/Snackbar.d.ts +0 -10
  785. package/ui/Snackbar.js +0 -49
  786. package/ui/SnackbarContents.d.ts +0 -5
  787. package/ui/SnackbarContents.js +0 -16
  788. package/ui/SnackbarModel.d.ts +0 -17
  789. package/ui/SnackbarModel.js +0 -96
  790. package/ui/colors.js +0 -78
  791. package/ui/hooks.d.ts +0 -66
  792. package/ui/hooks.js +0 -185
  793. package/ui/index.d.ts +0 -19
  794. package/ui/index.js +0 -56
  795. package/ui/react-colorful.d.ts +0 -17
  796. package/ui/react-colorful.js +0 -466
  797. package/ui/theme.d.ts +0 -59
  798. package/ui/theme.js +0 -381
  799. package/ui/useEvent.js +0 -47
  800. package/util/Base1DUtils.d.ts +0 -38
  801. package/util/Base1DUtils.js +0 -198
  802. package/util/Base1DViewModel.d.ts +0 -61
  803. package/util/Base1DViewModel.js +0 -135
  804. package/util/QuickLRU.d.ts +0 -32
  805. package/util/QuickLRU.js +0 -237
  806. package/util/TimeTraveller.d.ts +0 -19
  807. package/util/TimeTraveller.js +0 -90
  808. package/util/aborting.js +0 -48
  809. package/util/analytics.js +0 -86
  810. package/util/blobToDataURL.js +0 -17
  811. package/util/blockTypes.d.ts +0 -58
  812. package/util/blockTypes.js +0 -110
  813. package/util/calculateDynamicBlocks.d.ts +0 -3
  814. package/util/calculateDynamicBlocks.js +0 -100
  815. package/util/calculateStaticBlocks.d.ts +0 -13
  816. package/util/calculateStaticBlocks.js +0 -102
  817. package/util/cluster.d.ts +0 -17
  818. package/util/cluster.js +0 -102
  819. package/util/color/cssColorsLevel4.js +0 -160
  820. package/util/color/index.d.ts +0 -5
  821. package/util/color/index.js +0 -48
  822. package/util/colord.d.ts +0 -1
  823. package/util/colord.js +0 -13
  824. package/util/compositeMap.js +0 -61
  825. package/util/convertCodingSequenceToPeptides.d.ts +0 -6
  826. package/util/convertCodingSequenceToPeptides.js +0 -12
  827. package/util/dedupe.js +0 -15
  828. package/util/fetchSeq.d.ts +0 -8
  829. package/util/fetchSeq.js +0 -27
  830. package/util/flatbush/index.d.ts +0 -25
  831. package/util/flatbush/index.js +0 -362
  832. package/util/flatqueue/index.js +0 -66
  833. package/util/formatFastaStrings.js +0 -12
  834. package/util/idMaker.js +0 -24
  835. package/util/index.d.ts +0 -274
  836. package/util/index.js +0 -1052
  837. package/util/io/RemoteFileWithRangeCache.js +0 -76
  838. package/util/io/index.d.ts +0 -7
  839. package/util/io/index.js +0 -103
  840. package/util/jexl.d.ts +0 -4
  841. package/util/jexl.js +0 -55
  842. package/util/jexlStrings.js +0 -23
  843. package/util/layouts/BaseLayout.d.ts +0 -30
  844. package/util/layouts/BaseLayout.js +0 -2
  845. package/util/layouts/GranularRectLayout.d.ts +0 -37
  846. package/util/layouts/GranularRectLayout.js +0 -343
  847. package/util/layouts/MultiLayout.d.ts +0 -12
  848. package/util/layouts/MultiLayout.js +0 -42
  849. package/util/layouts/PrecomputedLayout.d.ts +0 -30
  850. package/util/layouts/PrecomputedLayout.js +0 -75
  851. package/util/layouts/PrecomputedMultiLayout.d.ts +0 -4
  852. package/util/layouts/PrecomputedMultiLayout.js +0 -21
  853. package/util/layouts/SceneGraph.js +0 -115
  854. package/util/layouts/index.d.ts +0 -7
  855. package/util/layouts/index.js +0 -31
  856. package/util/makeAbortableReaction.d.ts +0 -2
  857. package/util/makeAbortableReaction.js +0 -50
  858. package/util/map-obj.d.ts +0 -3
  859. package/util/map-obj.js +0 -37
  860. package/util/mst-reflection.d.ts +0 -11
  861. package/util/mst-reflection.js +0 -62
  862. package/util/nanoid.d.ts +0 -5
  863. package/util/nanoid.js +0 -43
  864. package/util/nextTick.js +0 -6
  865. package/util/offscreenCanvasPonyfill.d.ts +0 -7
  866. package/util/offscreenCanvasPonyfill.js +0 -65
  867. package/util/offscreenCanvasUtils.d.ts +0 -28
  868. package/util/offscreenCanvasUtils.js +0 -99
  869. package/util/parseLineByLine.js +0 -25
  870. package/util/range.js +0 -26
  871. package/util/rxjs.d.ts +0 -3
  872. package/util/rxjs.js +0 -21
  873. package/util/simpleFeature.d.ts +0 -44
  874. package/util/simpleFeature.js +0 -82
  875. package/util/stats.d.ts +0 -21
  876. package/util/stats.js +0 -78
  877. package/util/stopToken.d.ts +0 -3
  878. package/util/stopToken.js +0 -29
  879. package/util/tracks.d.ts +0 -55
  880. package/util/tracks.js +0 -168
  881. package/util/types/index.d.ts +0 -254
  882. package/util/types/index.js +0 -172
  883. package/util/types/mst.d.ts +0 -107
  884. package/util/types/mst.js +0 -72
  885. package/util/types/util.d.ts +0 -6
  886. package/util/types/util.js +0 -2
  887. package/util/useFeatureSequence.d.ts +0 -19
  888. package/util/useFeatureSequence.js +0 -90
  889. package/util/useMeasure.js +0 -33
  890. package/util/when.js +0 -5
  891. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/ArrayValue.d.ts +0 -0
  892. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/BasicValue.d.ts +0 -0
  893. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/DataGridDetails.d.ts +0 -0
  894. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/FieldName.d.ts +0 -0
  895. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/SimpleField.d.ts +0 -0
  896. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/UriField.d.ts +0 -0
  897. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/util.d.ts +0 -0
  898. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/consts.d.ts +0 -0
  899. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +0 -0
  900. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/util.d.ts +0 -0
  901. /package/{PhasedScheduler.d.ts → esm/PhasedScheduler.d.ts} +0 -0
  902. /package/{ReExports → esm/ReExports}/BaseFeatureDetails.d.ts +0 -0
  903. /package/{ReExports → esm/ReExports}/DataGrid.d.ts +0 -0
  904. /package/{ReExports → esm/ReExports}/MuiDataGridReExports.d.ts +0 -0
  905. /package/{ReExports → esm/ReExports}/lazify.d.ts +0 -0
  906. /package/{ReExports → esm/ReExports}/list.d.ts +0 -0
  907. /package/{ReExports → esm/ReExports}/modules.d.ts +0 -0
  908. /package/{data_adapters → esm/data_adapters}/util.d.ts +0 -0
  909. /package/{pluggableElementTypes → esm/pluggableElementTypes}/PluggableElementBase.d.ts +0 -0
  910. /package/{pluggableElementTypes → esm/pluggableElementTypes}/renderers/util/serializableFilterChain.d.ts +0 -0
  911. /package/{ui → esm/ui}/BaseTooltip.d.ts +0 -0
  912. /package/{ui → esm/ui}/ColorPicker.d.ts +0 -0
  913. /package/{ui → esm/ui}/ConfirmDialog.d.ts +0 -0
  914. /package/{ui → esm/ui}/DraggableDialog.d.ts +0 -0
  915. /package/{ui → esm/ui}/EditableTypography.d.ts +0 -0
  916. /package/{ui → esm/ui}/ErrorMessage.d.ts +0 -0
  917. /package/{ui → esm/ui}/ErrorMessageStackTraceDialog.d.ts +0 -0
  918. /package/{ui → esm/ui}/ExternalLink.d.ts +0 -0
  919. /package/{ui → esm/ui}/FactoryResetDialog.d.ts +0 -0
  920. /package/{ui → esm/ui}/FatalErrorDialog.d.ts +0 -0
  921. /package/{ui → esm/ui}/HoverMenu.d.ts +0 -0
  922. /package/{ui → esm/ui}/Icons.d.ts +0 -0
  923. /package/{ui → esm/ui}/LoadingEllipses.d.ts +0 -0
  924. /package/{ui → esm/ui}/Logo.d.ts +0 -0
  925. /package/{ui → esm/ui}/RedErrorMessageBox.d.ts +0 -0
  926. /package/{ui → esm/ui}/ResizeHandle.d.ts +0 -0
  927. /package/{ui → esm/ui}/ReturnToImportFormDialog.d.ts +0 -0
  928. /package/{ui → esm/ui}/SanitizedHTML.d.ts +0 -0
  929. /package/{ui → esm/ui}/colors.d.ts +0 -0
  930. /package/{ui → esm/ui}/useEvent.d.ts +0 -0
  931. /package/{util → esm/util}/aborting.d.ts +0 -0
  932. /package/{util → esm/util}/analytics.d.ts +0 -0
  933. /package/{util → esm/util}/blobToDataURL.d.ts +0 -0
  934. /package/{util → esm/util}/color/cssColorsLevel4.d.ts +0 -0
  935. /package/{util → esm/util}/compositeMap.d.ts +0 -0
  936. /package/{util → esm/util}/dedupe.d.ts +0 -0
  937. /package/{util → esm/util}/flatqueue/index.d.ts +0 -0
  938. /package/{util → esm/util}/formatFastaStrings.d.ts +0 -0
  939. /package/{util → esm/util}/idMaker.d.ts +0 -0
  940. /package/{util → esm/util}/io/RemoteFileWithRangeCache.d.ts +0 -0
  941. /package/{util → esm/util}/jexlStrings.d.ts +0 -0
  942. /package/{util → esm/util}/layouts/SceneGraph.d.ts +0 -0
  943. /package/{util → esm/util}/nextTick.d.ts +0 -0
  944. /package/{util → esm/util}/parseLineByLine.d.ts +0 -0
  945. /package/{util → esm/util}/range.d.ts +0 -0
  946. /package/{util → esm/util}/useMeasure.d.ts +0 -0
  947. /package/{util → esm/util}/when.d.ts +0 -0
package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js ADDED
@@ -0,0 +1,1116 @@
1
+ export default {
2
+ source: 'BestRefSeq',
3
+ type: 'gene',
4
+ start: 36023399,
5
+ end: 36032380,
6
+ strand: 1,
7
+ phase: 0,
8
+ refName: 'NC_000001.10',
9
+ id: 'gene634',
10
+ dbxref: ['GeneID:23154', 'HGNC:HGNC:17597', 'MIM:608458'],
11
+ name: 'NCDN',
12
+ description: 'neurochondrin',
13
+ gbkey: 'Gene',
14
+ gene: 'NCDN',
15
+ gene_biotype: 'protein_coding',
16
+ subfeatures: [
17
+ {
18
+ source: 'BestRefSeq',
19
+ type: 'mRNA',
20
+ start: 36023399,
21
+ end: 36032380,
22
+ strand: 1,
23
+ phase: 0,
24
+ refName: 'NC_000001.10',
25
+ id: 'mRNA1331',
26
+ parent: 'gene634',
27
+ dbxref: [
28
+ 'GeneID:23154',
29
+ 'Genbank:NM_014284.3',
30
+ 'HGNC:HGNC:17597',
31
+ 'MIM:608458',
32
+ ],
33
+ name: 'NM_014284.3',
34
+ gbkey: 'mRNA',
35
+ gene: 'NCDN',
36
+ product: 'neurochondrin, transcript variant 3',
37
+ tag: 'RefSeq Select',
38
+ transcript_id: 'NM_014284.3',
39
+ subfeatures: [
40
+ {
41
+ source: 'BestRefSeq',
42
+ type: 'exon',
43
+ start: 36023399,
44
+ end: 36023824,
45
+ strand: 1,
46
+ phase: 0,
47
+ refName: 'NC_000001.10',
48
+ parent: 'mRNA1331',
49
+ dbxref: [
50
+ 'GeneID:23154',
51
+ 'Genbank:NM_014284.3',
52
+ 'HGNC:HGNC:17597',
53
+ 'MIM:608458',
54
+ ],
55
+ gbkey: 'mRNA',
56
+ gene: 'NCDN',
57
+ product: 'neurochondrin, transcript variant 3',
58
+ tag: 'RefSeq Select',
59
+ transcript_id: 'NM_014284.3',
60
+ uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-0',
61
+ parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
62
+ },
63
+ {
64
+ source: 'BestRefSeq',
65
+ type: 'CDS',
66
+ start: 36023791,
67
+ end: 36023824,
68
+ strand: 1,
69
+ phase: 0,
70
+ refName: 'NC_000001.10',
71
+ id: 'CDS1286',
72
+ parent: 'mRNA1331',
73
+ dbxref: [
74
+ 'CCDS:CCDS392.1',
75
+ 'GeneID:23154',
76
+ 'Genbank:NP_055099.1',
77
+ 'HGNC:HGNC:17597',
78
+ 'MIM:608458',
79
+ ],
80
+ name: 'NP_055099.1',
81
+ note: 'isoform 1 is encoded by transcript variant 3',
82
+ gbkey: 'CDS',
83
+ gene: 'NCDN',
84
+ product: 'neurochondrin isoform 1',
85
+ protein_id: 'NP_055099.1',
86
+ tag: 'RefSeq Select',
87
+ uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-1',
88
+ parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
89
+ },
90
+ {
91
+ source: 'BestRefSeq',
92
+ type: 'CDS',
93
+ start: 36024707,
94
+ end: 36024848,
95
+ strand: 1,
96
+ phase: 0,
97
+ refName: 'NC_000001.10',
98
+ id: 'CDS1286',
99
+ parent: 'mRNA1331',
100
+ dbxref: [
101
+ 'CCDS:CCDS392.1',
102
+ 'GeneID:23154',
103
+ 'Genbank:NP_055099.1',
104
+ 'HGNC:HGNC:17597',
105
+ 'MIM:608458',
106
+ ],
107
+ name: 'NP_055099.1',
108
+ note: 'isoform 1 is encoded by transcript variant 3',
109
+ gbkey: 'CDS',
110
+ gene: 'NCDN',
111
+ product: 'neurochondrin isoform 1',
112
+ protein_id: 'NP_055099.1',
113
+ tag: 'RefSeq Select',
114
+ uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-2',
115
+ parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
116
+ },
117
+ {
118
+ source: 'BestRefSeq',
119
+ type: 'CDS',
120
+ start: 36025926,
121
+ end: 36026895,
122
+ strand: 1,
123
+ phase: 0,
124
+ refName: 'NC_000001.10',
125
+ id: 'CDS1286',
126
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+ transcript_id: 'NM_001014839.2',
1063
+ uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-2-12',
1064
+ parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-2',
1065
+ },
1066
+ {
1067
+ source: 'BestRefSeq',
1068
+ type: 'exon',
1069
+ start: 36029367,
1070
+ end: 36029510,
1071
+ strand: 1,
1072
+ phase: 0,
1073
+ refName: 'NC_000001.10',
1074
+ parent: 'mRNA1332',
1075
+ dbxref: [
1076
+ 'GeneID:23154',
1077
+ 'Genbank:NM_001014839.2',
1078
+ 'HGNC:HGNC:17597',
1079
+ 'MIM:608458',
1080
+ ],
1081
+ gbkey: 'mRNA',
1082
+ gene: 'NCDN',
1083
+ product: 'neurochondrin, transcript variant 1',
1084
+ transcript_id: 'NM_001014839.2',
1085
+ uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-2-13',
1086
+ parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-2',
1087
+ },
1088
+ {
1089
+ source: 'BestRefSeq',
1090
+ type: 'exon',
1091
+ start: 36030827,
1092
+ end: 36032380,
1093
+ strand: 1,
1094
+ phase: 0,
1095
+ refName: 'NC_000001.10',
1096
+ parent: 'mRNA1332',
1097
+ dbxref: [
1098
+ 'GeneID:23154',
1099
+ 'Genbank:NM_001014839.2',
1100
+ 'HGNC:HGNC:17597',
1101
+ 'MIM:608458',
1102
+ ],
1103
+ gbkey: 'mRNA',
1104
+ gene: 'NCDN',
1105
+ product: 'neurochondrin, transcript variant 1',
1106
+ transcript_id: 'NM_001014839.2',
1107
+ uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-2-14',
1108
+ parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-2',
1109
+ },
1110
+ ],
1111
+ uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-2',
1112
+ parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638',
1113
+ },
1114
+ ],
1115
+ uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638',
1116
+ };