@jbrowse/core 3.7.0 → 4.0.1

package/data_adapters/BaseAdapter/BaseAdapter.d.ts

@@ -1,14 +0,0 @@
-import type PluginManager from '../../PluginManager';
-import type { AnyConfigurationModel } from '../../configuration';
-import type { AugmentedRegion as Region } from '../../util/types';
-import type { getSubAdapterType } from '../dataAdapterCache';
-export declare class BaseAdapter {
-    config: AnyConfigurationModel;
-    getSubAdapter?: getSubAdapterType | undefined;
-    pluginManager?: PluginManager | undefined;
-    id: string;
-    static capabilities: string[];
-    constructor(config?: AnyConfigurationModel, getSubAdapter?: getSubAdapterType | undefined, pluginManager?: PluginManager | undefined);
-    getConf(arg: string | string[]): any;
-    freeResources(_region: Region): void;
-}

package/data_adapters/BaseAdapter/BaseAdapter.js

@@ -1,30 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.BaseAdapter = void 0;
-const mobx_state_tree_1 = require("mobx-state-tree");
-const configuration_1 = require("../../configuration");
-const idMaker_1 = __importDefault(require("../../util/idMaker"));
-const EmptyConfig = (0, configuration_1.ConfigurationSchema)('empty', {});
-class BaseAdapter {
-    constructor(config = EmptyConfig.create(), getSubAdapter, pluginManager) {
-        this.config = config;
-        this.getSubAdapter = getSubAdapter;
-        this.pluginManager = pluginManager;
-        if (typeof jest === 'undefined') {
-            const data = (0, mobx_state_tree_1.isStateTreeNode)(config) ? (0, mobx_state_tree_1.getSnapshot)(config) : config;
-            this.id = `${(0, idMaker_1.default)(data)}`;
-        }
-        else {
-            this.id = 'test';
-        }
-    }
-    getConf(arg) {
-        return (0, configuration_1.readConfObject)(this.config, arg);
-    }
-    freeResources(_region) { }
-}
-exports.BaseAdapter = BaseAdapter;
-BaseAdapter.capabilities = [];

package/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts

@@ -1,24 +0,0 @@
-import { BaseAdapter } from './BaseAdapter';
-import type { BaseOptions } from './BaseOptions';
-import type { FeatureDensityStats } from './types';
-import type { Feature } from '../../util/simpleFeature';
-import type { AugmentedRegion as Region } from '../../util/types';
-import type { Observable } from 'rxjs';
-export declare abstract class BaseFeatureDataAdapter extends BaseAdapter {
-    abstract getRefNames(opts?: BaseOptions): Promise<string[]>;
-    abstract getFeatures(region: Region, opts?: BaseOptions): Observable<Feature>;
-    getHeader(_opts?: BaseOptions): Promise<unknown>;
-    getMetadata(_opts?: BaseOptions): Promise<unknown>;
-    getFeaturesInRegion(region: Region, opts?: BaseOptions): Observable<Feature>;
-    getFeaturesInMultipleRegions(regions: Region[], opts?: BaseOptions): Observable<Feature>;
-    hasDataForRefName(refName: string, opts?: BaseOptions): Promise<boolean>;
-    getRegionQuantitativeStats(region: Region, opts?: BaseOptions): Promise<import("../../util/stats").QuantitativeStats>;
-    getMultiRegionQuantitativeStats(regions?: Region[], opts?: BaseOptions): Promise<import("../../util/stats").QuantitativeStats>;
-    getRegionFeatureDensityStats(region: Region, opts?: BaseOptions): Promise<FeatureDensityStats>;
-    getMultiRegionFeatureDensityStats(regions: Region[], opts?: BaseOptions): Promise<FeatureDensityStats>;
-    getSources(regions: Region[]): Promise<{
-        name: string;
-        color?: string;
-        [key: string]: unknown;
-    }[]>;
-}

package/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js

@@ -1,115 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.BaseFeatureDataAdapter = void 0;
-const rxjs_1 = require("rxjs");
-const operators_1 = require("rxjs/operators");
-const BaseAdapter_1 = require("./BaseAdapter");
-const util_1 = require("../../util");
-const rxjs_2 = require("../../util/rxjs");
-const stats_1 = require("../../util/stats");
-const stopToken_1 = require("../../util/stopToken");
-class BaseFeatureDataAdapter extends BaseAdapter_1.BaseAdapter {
-    async getHeader(_opts) {
-        return null;
-    }
-    async getMetadata(_opts) {
-        return null;
-    }
-    getFeaturesInRegion(region, opts = {}) {
-        return (0, rxjs_2.ObservableCreate)(async (observer) => {
-            const hasData = await this.hasDataForRefName(region.refName, opts);
-            (0, stopToken_1.checkStopToken)(opts.stopToken);
-            if (!hasData) {
-                observer.complete();
-            }
-            else {
-                this.getFeatures(region, opts).subscribe(observer);
-            }
-        });
-    }
-    getFeaturesInMultipleRegions(regions, opts = {}) {
-        return (0, rxjs_1.merge)(...regions.map(region => this.getFeaturesInRegion(region, opts)));
-    }
-    async hasDataForRefName(refName, opts = {}) {
-        const refNames = await this.getRefNames(opts);
-        return refNames.includes(refName);
-    }
-    async getRegionQuantitativeStats(region, opts) {
-        const feats = this.getFeatures(region, opts);
-        return (0, stats_1.scoresToStats)(region, feats);
-    }
-    async getMultiRegionQuantitativeStats(regions = [], opts) {
-        if (!regions.length) {
-            return (0, stats_1.blankStats)();
-        }
-        const feats = await Promise.all(regions.map(region => this.getRegionQuantitativeStats(region, opts)));
-        const scoreMax = (0, util_1.max)(feats.map(a => a.scoreMax));
-        const scoreMin = (0, util_1.min)(feats.map(a => a.scoreMin));
-        const scoreSum = (0, util_1.sum)(feats.map(a => a.scoreSum));
-        const scoreSumSquares = (0, util_1.sum)(feats.map(a => a.scoreSumSquares));
-        const featureCount = (0, util_1.sum)(feats.map(a => a.featureCount));
-        const basesCovered = (0, util_1.sum)(feats.map(a => a.basesCovered));
-        return (0, stats_1.rectifyStats)({
-            scoreMin,
-            scoreMax,
-            featureCount,
-            basesCovered,
-            scoreSumSquares,
-            scoreSum,
-        });
-    }
-    getRegionFeatureDensityStats(region, opts) {
-        let lastTime = Date.now();
-        const statsFromInterval = async (length, expansionTime) => {
-            const { start, end } = region;
-            const sampleCenter = start * 0.75 + end * 0.25;
-            const features = await (0, rxjs_1.firstValueFrom)(this.getFeatures({
-                ...region,
-                start: Math.max(0, Math.round(sampleCenter - length / 2)),
-                end: Math.min(Math.round(sampleCenter + length / 2), end),
-            }, opts).pipe((0, operators_1.toArray)()));
-            return maybeRecordStats({
-                interval: length,
-                statsSampleFeatures: features.length,
-                expansionTime,
-                stats: {
-                    featureDensity: features.length / length,
-                },
-            });
-        };
-        const maybeRecordStats = async ({ interval, stats, statsSampleFeatures, expansionTime, }) => {
-            const refLen = region.end - region.start;
-            if (statsSampleFeatures >= 70 || interval * 2 > refLen) {
-                return stats;
-            }
-            else if (expansionTime <= 5000) {
-                const currTime = Date.now();
-                expansionTime += currTime - lastTime;
-                lastTime = currTime;
-                return statsFromInterval(interval * 2, expansionTime);
-            }
-            else {
-                console.warn("Stats estimation reached timeout, or didn't get enough features");
-                return { featureDensity: Number.POSITIVE_INFINITY };
-            }
-        };
-        return statsFromInterval(1000, 0);
-    }
-    async getMultiRegionFeatureDensityStats(regions, opts) {
-        if (!regions.length) {
-            throw new Error('No regions supplied');
-        }
-        return this.getRegionFeatureDensityStats(regions[0], opts);
-    }
-    async getSources(regions) {
-        const features = await (0, rxjs_1.firstValueFrom)(this.getFeaturesInMultipleRegions(regions).pipe((0, operators_1.toArray)()));
-        const sources = new Set();
-        for (const f of features) {
-            sources.add(f.get('source'));
-        }
-        return [...sources].map(source => ({
-            name: source,
-        }));
-    }
-}
-exports.BaseFeatureDataAdapter = BaseFeatureDataAdapter;

package/data_adapters/BaseAdapter/BaseOptions.d.ts

@@ -1,15 +0,0 @@
-export interface BaseOptions {
-    stopToken?: string;
-    bpPerPx?: number;
-    sessionId?: string;
-    statusCallback?: (message: string) => void;
-    headers?: Record<string, string>;
-}
-export type SearchType = 'full' | 'prefix' | 'exact';
-export interface BaseTextSearchArgs {
-    queryString: string;
-    searchType?: SearchType;
-    stopToken?: string;
-    limit?: number;
-    pageNumber?: number;
-}

package/data_adapters/BaseAdapter/BaseOptions.js

@@ -1,2 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });

package/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts

@@ -1,10 +0,0 @@
-import type { BaseAdapter } from './BaseAdapter';
-import type { BaseOptions } from './types';
-export interface Alias {
-    refName: string;
-    aliases: string[];
-    override?: boolean;
-}
-export interface BaseRefNameAliasAdapter extends BaseAdapter {
-    getRefNameAliases(opts: BaseOptions): Promise<Alias[]>;
-}

package/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.js

@@ -1,2 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });

package/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts

@@ -1,10 +0,0 @@
-import { BaseFeatureDataAdapter } from './BaseFeatureDataAdapter';
-import type { BaseOptions } from './types';
-import type { NoAssemblyRegion } from '../../util';
-import type { RegionsAdapter } from '../BaseAdapter';
-export declare abstract class BaseSequenceAdapter extends BaseFeatureDataAdapter implements RegionsAdapter {
-    getMultiRegionFeatureDensityStats(): Promise<{
-        featureDensity: number;
-    }>;
-    abstract getRegions(opts: BaseOptions): Promise<NoAssemblyRegion[]>;
-}

package/data_adapters/BaseAdapter/BaseSequenceAdapter.js

@@ -1,10 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.BaseSequenceAdapter = void 0;
-const BaseFeatureDataAdapter_1 = require("./BaseFeatureDataAdapter");
-class BaseSequenceAdapter extends BaseFeatureDataAdapter_1.BaseFeatureDataAdapter {
-    async getMultiRegionFeatureDensityStats() {
-        return { featureDensity: 0 };
-    }
-}
-exports.BaseSequenceAdapter = BaseSequenceAdapter;

package/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts

@@ -1,6 +0,0 @@
-import type { BaseAdapter } from './BaseAdapter';
-import type { BaseTextSearchArgs } from './types';
-import type BaseResult from '../../TextSearch/BaseResults';
-export interface BaseTextSearchAdapter extends BaseAdapter {
-    searchIndex(args: BaseTextSearchArgs): Promise<BaseResult[]>;
-}

package/data_adapters/BaseAdapter/BaseTextSearchAdapter.js

@@ -1,2 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });

package/data_adapters/BaseAdapter/RegionsAdapter.d.ts

@@ -1,6 +0,0 @@
-import type { BaseAdapter } from './BaseAdapter';
-import type { BaseOptions } from './types';
-import type { NoAssemblyRegion } from '../../util';
-export interface RegionsAdapter extends BaseAdapter {
-    getRegions(opts: BaseOptions): Promise<NoAssemblyRegion[]>;
-}

package/data_adapters/BaseAdapter/RegionsAdapter.js

@@ -1,2 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });

package/data_adapters/BaseAdapter/index.d.ts

@@ -1,13 +0,0 @@
-import type PluginManager from '../../PluginManager';
-import type { AnyConfigurationModel } from '../../configuration';
-import type { getSubAdapterType } from '../dataAdapterCache';
-import type { AnyDataAdapter } from './util';
-export * from './util';
-export * from './types';
-export { BaseAdapter } from './BaseAdapter';
-export { BaseFeatureDataAdapter } from './BaseFeatureDataAdapter';
-export { BaseSequenceAdapter } from './BaseSequenceAdapter';
-export type { BaseTextSearchAdapter } from './BaseTextSearchAdapter';
-export type { BaseRefNameAliasAdapter } from './BaseRefNameAliasAdapter';
-export type { RegionsAdapter } from './RegionsAdapter';
-export type AnyAdapter = new (config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager) => AnyDataAdapter;

package/data_adapters/BaseAdapter/index.js

@@ -1,25 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __exportStar = (this && this.__exportStar) || function(m, exports) {
-    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.BaseSequenceAdapter = exports.BaseFeatureDataAdapter = exports.BaseAdapter = void 0;
-__exportStar(require("./util"), exports);
-__exportStar(require("./types"), exports);
-var BaseAdapter_1 = require("./BaseAdapter");
-Object.defineProperty(exports, "BaseAdapter", { enumerable: true, get: function () { return BaseAdapter_1.BaseAdapter; } });
-var BaseFeatureDataAdapter_1 = require("./BaseFeatureDataAdapter");
-Object.defineProperty(exports, "BaseFeatureDataAdapter", { enumerable: true, get: function () { return BaseFeatureDataAdapter_1.BaseFeatureDataAdapter; } });
-var BaseSequenceAdapter_1 = require("./BaseSequenceAdapter");
-Object.defineProperty(exports, "BaseSequenceAdapter", { enumerable: true, get: function () { return BaseSequenceAdapter_1.BaseSequenceAdapter; } });

package/data_adapters/BaseAdapter/types.d.ts

@@ -1,21 +0,0 @@
-export interface BaseOptions {
-    stopToken?: string;
-    bpPerPx?: number;
-    sessionId?: string;
-    signal?: AbortSignal;
-    statusCallback?: (message: string) => void;
-    headers?: Record<string, string>;
-}
-export type SearchType = 'full' | 'prefix' | 'exact';
-export interface BaseTextSearchArgs {
-    queryString: string;
-    searchType?: SearchType;
-    stopToken?: string;
-    limit?: number;
-    pageNumber?: number;
-}
-export interface FeatureDensityStats {
-    featureDensity?: number;
-    fetchSizeLimit?: number;
-    bytes?: number;
-}

package/data_adapters/BaseAdapter/types.js

@@ -1,2 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });

package/data_adapters/BaseAdapter/util.d.ts

@@ -1,12 +0,0 @@
-import type { BaseAdapter } from './BaseAdapter';
-import type { BaseFeatureDataAdapter } from './BaseFeatureDataAdapter';
-import type { BaseRefNameAliasAdapter } from './BaseRefNameAliasAdapter';
-import type { BaseSequenceAdapter } from './BaseSequenceAdapter';
-import type { BaseTextSearchAdapter } from './BaseTextSearchAdapter';
-import type { RegionsAdapter } from './RegionsAdapter';
-export type AnyDataAdapter = BaseAdapter | BaseFeatureDataAdapter | BaseRefNameAliasAdapter | BaseTextSearchAdapter | RegionsAdapter | BaseSequenceAdapter;
-export declare function isSequenceAdapter(t: AnyDataAdapter): t is BaseSequenceAdapter;
-export declare function isRegionsAdapter(t: AnyDataAdapter): t is RegionsAdapter;
-export declare function isFeatureAdapter(t: AnyDataAdapter): t is BaseFeatureDataAdapter;
-export declare function isRefNameAliasAdapter(t: object): t is BaseRefNameAliasAdapter;
-export declare function isTextSearchAdapter(t: AnyDataAdapter): t is BaseTextSearchAdapter;

package/data_adapters/BaseAdapter/util.js

@@ -1,22 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.isSequenceAdapter = isSequenceAdapter;
-exports.isRegionsAdapter = isRegionsAdapter;
-exports.isFeatureAdapter = isFeatureAdapter;
-exports.isRefNameAliasAdapter = isRefNameAliasAdapter;
-exports.isTextSearchAdapter = isTextSearchAdapter;
-function isSequenceAdapter(t) {
-    return 'getRegions' in t && 'getFeatures' in t;
-}
-function isRegionsAdapter(t) {
-    return 'getRegions' in t;
-}
-function isFeatureAdapter(t) {
-    return 'getFeatures' in t;
-}
-function isRefNameAliasAdapter(t) {
-    return 'getRefNameAliases' in t;
-}
-function isTextSearchAdapter(t) {
-    return 'searchIndex' in t;
-}

package/data_adapters/CytobandAdapter/CytobandAdapter.d.ts

@@ -1,6 +0,0 @@
-import { SimpleFeature } from '../../util';
-import { BaseAdapter } from '../BaseAdapter';
-import type { BaseOptions } from '../BaseAdapter/BaseOptions';
-export default class CytobandAdapter extends BaseAdapter {
-    getData(opts?: BaseOptions): Promise<SimpleFeature[]>;
-}

package/data_adapters/CytobandAdapter/CytobandAdapter.js

@@ -1,31 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const util_1 = require("../../util");
-const io_1 = require("../../util/io");
-const BaseAdapter_1 = require("../BaseAdapter");
-class CytobandAdapter extends BaseAdapter_1.BaseAdapter {
-    async getData(opts) {
-        const conf = this.getConf('cytobandLocation');
-        if (conf.uri === '' || conf.uri === '/path/to/cytoband.txt.gz') {
-            return [];
-        }
-        const text = await (0, util_1.fetchAndMaybeUnzipText)((0, io_1.openLocation)(conf, this.pluginManager), opts);
-        return text
-            .split(/\n|\r\n|\r/)
-            .filter(f => !!f.trim())
-            .filter(f => !f.startsWith('#'))
-            .map((line, i) => {
-            const [refName, start, end, name, type] = line.split('\t');
-            return new util_1.SimpleFeature({
-                uniqueId: `${i}`,
-                refName: refName,
-                start: +start,
-                end: +end,
-                name,
-                type,
-                gieStain: type || name,
-            });
-        });
-    }
-}
-exports.default = CytobandAdapter;

package/data_adapters/CytobandAdapter/configSchema.d.ts

@@ -1,9 +0,0 @@
-declare const configSchema: import("../../configuration/configurationSchema").ConfigurationSchemaType<{
-    cytobandLocation: {
-        type: string;
-        defaultValue: {
-            uri: string;
-        };
-    };
-}, import("../../configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-export default configSchema;

package/data_adapters/CytobandAdapter/configSchema.js

@@ -1,26 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("../../configuration");
-function x() { }
-const configSchema = (0, configuration_1.ConfigurationSchema)('CytobandAdapter', {
-    cytobandLocation: {
-        type: 'fileLocation',
-        defaultValue: {
-            uri: '/path/to/cytoband.txt.gz',
-        },
-    },
-}, {
-    explicitlyTyped: true,
-    preProcessSnapshot: snap => {
-        return snap.uri
-            ? {
-                ...snap,
-                cytobandLocation: {
-                    uri: snap.uri,
-                    baseUri: snap.baseUri,
-                },
-            }
-            : snap;
-    },
-});
-exports.default = configSchema;

package/data_adapters/CytobandAdapter/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '../../PluginManager';
-export default function CytobandAdapterF(pluginManager: PluginManager): void;

package/data_adapters/CytobandAdapter/index.js

@@ -1,51 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = CytobandAdapterF;
-const configSchema_1 = __importDefault(require("./configSchema"));
-const pluggableElementTypes_1 = require("../../pluggableElementTypes");
-function CytobandAdapterF(pluginManager) {
-    pluginManager.addAdapterType(() => new pluggableElementTypes_1.AdapterType({
-        name: 'CytobandAdapter',
-        configSchema: configSchema_1.default,
-        adapterMetadata: {
-            hiddenFromGUI: true,
-        },
-        getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./CytobandAdapter'))).then(f => f.default),
-    }));
-}

package/data_adapters/dataAdapterCache.d.ts

@@ -1,14 +0,0 @@
-import type PluginManager from '../PluginManager';
-import type { AnyConfigurationSchemaType } from '../configuration';
-import type { AnyDataAdapter } from './BaseAdapter';
-import type { SnapshotIn } from 'mobx-state-tree';
-type ConfigSnap = SnapshotIn<AnyConfigurationSchemaType>;
-interface AdapterCacheEntry {
-    dataAdapter: AnyDataAdapter;
-    sessionIds: Set<string>;
-}
-export declare function getAdapter(pluginManager: PluginManager, sessionId: string, adapterConfigSnapshot: SnapshotIn<AnyConfigurationSchemaType>): Promise<AdapterCacheEntry>;
-export type getSubAdapterType = (adapterConfigSnap: ConfigSnap) => ReturnType<typeof getAdapter>;
-export declare function freeAdapterResources(args: Record<string, any>): Promise<void>;
-export declare function clearAdapterCache(): void;
-export {};

package/data_adapters/dataAdapterCache.js

@@ -1,60 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.getAdapter = getAdapter;
-exports.freeAdapterResources = freeAdapterResources;
-exports.clearAdapterCache = clearAdapterCache;
-const util_1 = require("./util");
-let adapterCache = {};
-async function getAdapterPre(pluginManager, sessionId, adapterConfigSnapshot) {
-    const adapterType = adapterConfigSnapshot === null || adapterConfigSnapshot === void 0 ? void 0 : adapterConfigSnapshot.type;
-    if (!adapterType) {
-        throw new Error(`could not determine adapter type from adapter config snapshot ${JSON.stringify(adapterConfigSnapshot)}`);
-    }
-    const dataAdapterType = pluginManager.getAdapterType(adapterType);
-    if (!dataAdapterType) {
-        throw new Error(`unknown data adapter type ${adapterType}`);
-    }
-    const adapterConfig = dataAdapterType.configSchema.create(adapterConfigSnapshot, { pluginManager });
-    const getSubAdapter = getAdapter.bind(null, pluginManager, sessionId);
-    const CLASS = await dataAdapterType.getAdapterClass();
-    const dataAdapter = new CLASS(adapterConfig, getSubAdapter, pluginManager);
-    return {
-        dataAdapter,
-        sessionIds: new Set([sessionId]),
-    };
-}
-async function getAdapter(pluginManager, sessionId, adapterConfigSnapshot) {
-    var _a;
-    const cacheKey = (0, util_1.adapterConfigCacheKey)(adapterConfigSnapshot);
-    (_a = adapterCache[cacheKey]) !== null && _a !== void 0 ? _a : (adapterCache[cacheKey] = getAdapterPre(pluginManager, sessionId, adapterConfigSnapshot));
-    const ret = await adapterCache[cacheKey];
-    ret.sessionIds.add(sessionId);
-    return ret;
-}
-async function freeAdapterResources(args) {
-    const specKeys = Object.keys(args);
-    if (specKeys.length === 1 && specKeys[0] === 'sessionId') {
-        const { sessionId } = args;
-        for (const [cacheKey, cacheEntryP] of Object.entries(adapterCache)) {
-            const cacheEntry = await cacheEntryP;
-            cacheEntry.sessionIds.delete(sessionId);
-            if (cacheEntry.sessionIds.size === 0) {
-                delete adapterCache[cacheKey];
-            }
-        }
-    }
-    else {
-        for (const cacheEntryP of Object.values(adapterCache)) {
-            const cacheEntry = await cacheEntryP;
-            const regions = args.regions || (args.region ? [args.region] : []);
-            for (const region of regions) {
-                if (region.refName !== undefined) {
-                    cacheEntry.dataAdapter.freeResources(region);
-                }
-            }
-        }
-    }
-}
-function clearAdapterCache() {
-    adapterCache = {};
-}

package/data_adapters/util.js

@@ -1,10 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.adapterConfigCacheKey = adapterConfigCacheKey;
-const idMaker_1 = __importDefault(require("../util/idMaker"));
-function adapterConfigCacheKey(conf = {}) {
-    return `${(0, idMaker_1.default)(conf)}`;
-}

package/pluggableElementTypes/AdapterType.d.ts

@@ -1,25 +0,0 @@
-import PluggableElementBase from './PluggableElementBase';
-import type { AnyConfigurationSchemaType } from '../configuration';
-import type { AnyAdapter } from '../data_adapters/BaseAdapter';
-export interface AdapterMetadata {
-    category?: string;
-    hiddenFromGUI?: boolean;
-    description?: string;
-}
-export default class AdapterType extends PluggableElementBase {
-    getAdapterClass: () => Promise<AnyAdapter>;
-    configSchema: AnyConfigurationSchemaType;
-    adapterCapabilities: string[];
-    adapterMetadata?: AdapterMetadata;
-    constructor(stuff: {
-        name: string;
-        configSchema: AnyConfigurationSchemaType;
-        displayName?: string;
-        adapterCapabilities?: string[];
-        adapterMetadata?: AdapterMetadata;
-    } & ({
-        AdapterClass: AnyAdapter;
-    } | {
-        getAdapterClass: () => Promise<AnyAdapter>;
-    }));
-}

package/pluggableElementTypes/AdapterType.js

@@ -1,19 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const PluggableElementBase_1 = __importDefault(require("./PluggableElementBase"));
-class AdapterType extends PluggableElementBase_1.default {
-    constructor(stuff) {
-        super(stuff);
-        this.getAdapterClass =
-            'AdapterClass' in stuff
-                ? async () => stuff.AdapterClass
-                : stuff.getAdapterClass;
-        this.configSchema = stuff.configSchema;
-        this.adapterCapabilities = stuff.adapterCapabilities || [];
-        this.adapterMetadata = stuff.adapterMetadata;
-    }
-}
-exports.default = AdapterType;