@jbrowse/core 3.7.0 → 4.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (947) hide show
  1. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +32 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +13 -0
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +43 -0
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +8 -0
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +7 -0
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +2 -0
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +17 -0
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +2 -0
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +7 -0
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +20 -0
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +2 -0
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +24 -0
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +57 -0
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +11 -0
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +42 -0
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +24 -0
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +2 -0
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +14 -0
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +14 -0
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +22 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +24 -0
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +7 -0
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.js +1 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +26 -0
  26. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +10 -0
  27. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +41 -0
  28. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +7 -0
  29. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +44 -0
  30. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +7 -0
  31. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +34 -0
  32. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +8 -0
  33. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +26 -0
  34. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +3 -0
  35. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +29 -0
  36. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +6 -0
  37. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +11 -0
  38. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +8 -0
  39. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +40 -0
  40. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +8 -0
  41. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +105 -0
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +5 -0
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +64 -0
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +6 -0
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +48 -0
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.d.ts +1 -0
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -0
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +31 -0
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +83 -0
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +16 -0
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +83 -0
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +8 -0
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +16 -0
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +10 -0
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +52 -0
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +9 -0
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +21 -0
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +10 -0
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +22 -0
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +80 -0
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +583 -0
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +141 -0
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +1116 -0
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -0
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.js +1 -0
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +13 -0
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +73 -0
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +42 -0
  69. package/esm/BaseFeatureWidget/configSchema.d.ts +2 -0
  70. package/esm/BaseFeatureWidget/configSchema.js +3 -0
  71. package/esm/BaseFeatureWidget/index.d.ts +2 -0
  72. package/esm/BaseFeatureWidget/index.js +2 -0
  73. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +101 -0
  74. package/esm/BaseFeatureWidget/stateModelFactory.js +96 -0
  75. package/esm/BaseFeatureWidget/types.d.ts +22 -0
  76. package/esm/BaseFeatureWidget/types.js +1 -0
  77. package/esm/BaseFeatureWidget/util.d.ts +51 -0
  78. package/esm/BaseFeatureWidget/util.js +95 -0
  79. package/esm/CorePlugin.d.ts +6 -0
  80. package/esm/CorePlugin.js +24 -0
  81. package/esm/PhasedScheduler.js +25 -0
  82. package/esm/Plugin.d.ts +13 -0
  83. package/esm/Plugin.js +9 -0
  84. package/esm/PluginLoader.d.ts +64 -0
  85. package/esm/PluginLoader.js +164 -0
  86. package/esm/PluginManager.d.ts +125 -0
  87. package/esm/PluginManager.js +414 -0
  88. package/esm/ReExports/BaseFeatureDetails.js +9 -0
  89. package/esm/ReExports/DataGrid.js +1 -0
  90. package/esm/ReExports/MuiDataGridReExports.js +131 -0
  91. package/esm/ReExports/MuiReExports.d.ts +134 -0
  92. package/esm/ReExports/MuiReExports.js +115 -0
  93. package/esm/ReExports/index.d.ts +1 -0
  94. package/esm/ReExports/index.js +1 -0
  95. package/esm/ReExports/lazify.js +10 -0
  96. package/esm/ReExports/list.js +275 -0
  97. package/esm/ReExports/modules.js +149 -0
  98. package/esm/TextSearch/BaseResults.d.ts +46 -0
  99. package/esm/TextSearch/BaseResults.js +67 -0
  100. package/esm/TextSearch/TextSearchManager.d.ts +48 -0
  101. package/esm/TextSearch/TextSearchManager.js +77 -0
  102. package/esm/assemblyManager/assembly.d.ts +75 -0
  103. package/esm/assemblyManager/assembly.js +328 -0
  104. package/esm/assemblyManager/assemblyConfigSchema.d.ts +27 -0
  105. package/esm/assemblyManager/assemblyConfigSchema.js +51 -0
  106. package/esm/assemblyManager/assemblyManager.d.ts +528 -0
  107. package/esm/assemblyManager/assemblyManager.js +131 -0
  108. package/esm/assemblyManager/index.d.ts +3 -0
  109. package/esm/assemblyManager/index.js +2 -0
  110. package/esm/configuration/configurationSchema.d.ts +37 -0
  111. package/esm/configuration/configurationSchema.js +230 -0
  112. package/esm/configuration/configurationSlot.d.ts +33 -0
  113. package/esm/configuration/configurationSlot.js +239 -0
  114. package/esm/configuration/index.d.ts +3 -0
  115. package/esm/configuration/index.js +2 -0
  116. package/esm/configuration/types.d.ts +14 -0
  117. package/esm/configuration/types.js +1 -0
  118. package/esm/configuration/util.d.ts +10 -0
  119. package/esm/configuration/util.js +123 -0
  120. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +16 -0
  121. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +31 -0
  122. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +24 -0
  123. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +68 -0
  124. package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +18 -0
  125. package/esm/data_adapters/BaseAdapter/BaseOptions.js +1 -0
  126. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +10 -0
  127. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.js +1 -0
  128. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +11 -0
  129. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +12 -0
  130. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +6 -0
  131. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.js +1 -0
  132. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +6 -0
  133. package/esm/data_adapters/BaseAdapter/RegionsAdapter.js +1 -0
  134. package/esm/data_adapters/BaseAdapter/index.d.ts +13 -0
  135. package/esm/data_adapters/BaseAdapter/index.js +5 -0
  136. package/esm/data_adapters/BaseAdapter/stats.d.ts +10 -0
  137. package/esm/data_adapters/BaseAdapter/stats.js +48 -0
  138. package/esm/data_adapters/BaseAdapter/types.d.ts +23 -0
  139. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  140. package/esm/data_adapters/BaseAdapter/util.d.ts +12 -0
  141. package/esm/data_adapters/BaseAdapter/util.js +15 -0
  142. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +6 -0
  143. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +28 -0
  144. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +9 -0
  145. package/esm/data_adapters/CytobandAdapter/configSchema.js +24 -0
  146. package/esm/data_adapters/CytobandAdapter/index.d.ts +2 -0
  147. package/esm/data_adapters/CytobandAdapter/index.js +12 -0
  148. package/esm/data_adapters/dataAdapterCache.d.ts +14 -0
  149. package/esm/data_adapters/dataAdapterCache.js +54 -0
  150. package/esm/data_adapters/util.js +4 -0
  151. package/esm/pluggableElementTypes/AdapterType.d.ts +25 -0
  152. package/esm/pluggableElementTypes/AdapterType.js +17 -0
  153. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  154. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +10 -0
  155. package/esm/pluggableElementTypes/ConnectionType.d.ts +20 -0
  156. package/esm/pluggableElementTypes/ConnectionType.js +16 -0
  157. package/esm/pluggableElementTypes/DisplayType.d.ts +30 -0
  158. package/esm/pluggableElementTypes/DisplayType.js +20 -0
  159. package/esm/pluggableElementTypes/GlyphType.d.ts +43 -0
  160. package/esm/pluggableElementTypes/GlyphType.js +18 -0
  161. package/esm/pluggableElementTypes/InternetAccountType.d.ts +12 -0
  162. package/esm/pluggableElementTypes/InternetAccountType.js +10 -0
  163. package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
  164. package/esm/pluggableElementTypes/RpcMethodType.d.ts +19 -0
  165. package/esm/pluggableElementTypes/RpcMethodType.js +88 -0
  166. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +11 -0
  167. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +28 -0
  168. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +18 -0
  169. package/esm/pluggableElementTypes/TextSearchAdapterType.js +15 -0
  170. package/esm/pluggableElementTypes/TrackType.d.ts +16 -0
  171. package/esm/pluggableElementTypes/TrackType.js +14 -0
  172. package/esm/pluggableElementTypes/ViewType.d.ts +29 -0
  173. package/esm/pluggableElementTypes/ViewType.js +18 -0
  174. package/esm/pluggableElementTypes/WidgetType.d.ts +27 -0
  175. package/esm/pluggableElementTypes/WidgetType.js +18 -0
  176. package/esm/pluggableElementTypes/index.d.ts +27 -0
  177. package/esm/pluggableElementTypes/index.js +14 -0
  178. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +29 -0
  179. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +35 -0
  180. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +180 -0
  181. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +104 -0
  182. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +74 -0
  183. package/esm/pluggableElementTypes/models/BaseTrackModel.js +203 -0
  184. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +52 -0
  185. package/esm/pluggableElementTypes/models/BaseViewModel.js +42 -0
  186. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +86 -0
  187. package/esm/pluggableElementTypes/models/InternetAccountModel.js +151 -0
  188. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +16 -0
  189. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -0
  190. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +27 -0
  191. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +32 -0
  192. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +87 -0
  193. package/esm/pluggableElementTypes/models/baseTrackConfig.js +134 -0
  194. package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +11 -0
  195. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +158 -0
  196. package/esm/pluggableElementTypes/models/index.d.ts +14 -0
  197. package/esm/pluggableElementTypes/models/index.js +8 -0
  198. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.d.ts +4 -0
  199. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +9 -0
  200. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +5 -0
  201. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +17 -0
  202. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +7 -0
  203. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +108 -0
  204. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +5 -0
  205. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +91 -0
  206. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +11 -0
  207. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.js +1 -0
  208. package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +52 -0
  209. package/esm/pluggableElementTypes/renderers/BoxRendererType.js +78 -0
  210. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +4 -0
  211. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +4 -0
  212. package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +58 -0
  213. package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +77 -0
  214. package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +31 -0
  215. package/esm/pluggableElementTypes/renderers/LayoutSession.js +37 -0
  216. package/esm/pluggableElementTypes/renderers/RendererType.d.ts +28 -0
  217. package/esm/pluggableElementTypes/renderers/RendererType.js +20 -0
  218. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +57 -0
  219. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +113 -0
  220. package/esm/pluggableElementTypes/renderers/index.d.ts +6 -0
  221. package/esm/pluggableElementTypes/renderers/index.js +6 -0
  222. package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +30 -0
  223. package/esm/pluggableElementTypes/renderers/util.d.ts +3 -0
  224. package/esm/pluggableElementTypes/renderers/util.js +14 -0
  225. package/esm/rpc/BaseRpcDriver.d.ts +40 -0
  226. package/esm/rpc/BaseRpcDriver.js +116 -0
  227. package/esm/rpc/MainThreadRpcDriver.d.ts +14 -0
  228. package/esm/rpc/MainThreadRpcDriver.js +33 -0
  229. package/esm/rpc/RpcManager.d.ts +35 -0
  230. package/esm/rpc/RpcManager.js +63 -0
  231. package/esm/rpc/WebWorkerRpcDriver.d.ts +31 -0
  232. package/esm/rpc/WebWorkerRpcDriver.js +77 -0
  233. package/esm/rpc/baseRpcConfig.d.ts +8 -0
  234. package/esm/rpc/baseRpcConfig.js +10 -0
  235. package/esm/rpc/configSchema.d.ts +9 -0
  236. package/esm/rpc/configSchema.js +22 -0
  237. package/esm/rpc/coreRpcMethods.d.ts +12 -0
  238. package/esm/rpc/coreRpcMethods.js +12 -0
  239. package/esm/rpc/mainThreadRpcConfig.d.ts +8 -0
  240. package/esm/rpc/mainThreadRpcConfig.js +8 -0
  241. package/esm/rpc/methods/CoreFreeResources.d.ts +6 -0
  242. package/esm/rpc/methods/CoreFreeResources.js +14 -0
  243. package/esm/rpc/methods/CoreGetExportData.d.ts +19 -0
  244. package/esm/rpc/methods/CoreGetExportData.js +18 -0
  245. package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +17 -0
  246. package/esm/rpc/methods/CoreGetFeatureDensityStats.js +25 -0
  247. package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +11 -0
  248. package/esm/rpc/methods/CoreGetFeatureDetails.js +24 -0
  249. package/esm/rpc/methods/CoreGetFeatures.d.ts +18 -0
  250. package/esm/rpc/methods/CoreGetFeatures.js +31 -0
  251. package/esm/rpc/methods/CoreGetFileInfo.d.ts +9 -0
  252. package/esm/rpc/methods/CoreGetFileInfo.js +15 -0
  253. package/esm/rpc/methods/CoreGetMetadata.d.ts +9 -0
  254. package/esm/rpc/methods/CoreGetMetadata.js +15 -0
  255. package/esm/rpc/methods/CoreGetRefNames.d.ts +10 -0
  256. package/esm/rpc/methods/CoreGetRefNames.js +19 -0
  257. package/esm/rpc/methods/CoreGetRegions.d.ts +8 -0
  258. package/esm/rpc/methods/CoreGetRegions.js +15 -0
  259. package/esm/rpc/methods/CoreGetSequence.d.ts +13 -0
  260. package/esm/rpc/methods/CoreGetSequence.js +17 -0
  261. package/esm/rpc/methods/CoreRender.d.ts +14 -0
  262. package/esm/rpc/methods/CoreRender.js +35 -0
  263. package/esm/rpc/methods/CoreSaveFeatureData.d.ts +16 -0
  264. package/esm/rpc/methods/CoreSaveFeatureData.js +32 -0
  265. package/esm/rpc/methods/util.d.ts +15 -0
  266. package/esm/rpc/methods/util.js +7 -0
  267. package/esm/rpc/webWorkerRpcConfig.d.ts +8 -0
  268. package/esm/rpc/webWorkerRpcConfig.js +8 -0
  269. package/esm/ui/AppLogo.d.ts +7 -0
  270. package/esm/ui/AppLogo.js +10 -0
  271. package/esm/ui/AssemblySelector.d.ts +13 -0
  272. package/esm/ui/AssemblySelector.js +39 -0
  273. package/esm/ui/BaseTooltip.js +42 -0
  274. package/esm/ui/CascadingMenu.d.ts +30 -0
  275. package/esm/ui/CascadingMenu.js +48 -0
  276. package/esm/ui/CascadingMenuButton.d.ts +26 -0
  277. package/esm/ui/CascadingMenuButton.js +24 -0
  278. package/esm/ui/CascadingMenuHelpDialog.d.ts +5 -0
  279. package/esm/ui/CascadingMenuHelpDialog.js +10 -0
  280. package/esm/ui/CascadingMenuHelpIconButton.d.ts +5 -0
  281. package/esm/ui/CascadingMenuHelpIconButton.js +15 -0
  282. package/esm/ui/ColorPicker.js +62 -0
  283. package/esm/ui/ConfirmDialog.js +13 -0
  284. package/esm/ui/DataGridFlexContainer.d.ts +5 -0
  285. package/esm/ui/DataGridFlexContainer.js +12 -0
  286. package/esm/ui/Dialog.d.ts +7 -0
  287. package/esm/ui/Dialog.js +45 -0
  288. package/esm/ui/DraggableDialog.js +27 -0
  289. package/esm/ui/DropDownMenu.d.ts +6 -0
  290. package/esm/ui/DropDownMenu.js +24 -0
  291. package/esm/ui/EditableTypography.js +60 -0
  292. package/esm/ui/ErrorBoundary.d.ts +17 -0
  293. package/esm/ui/ErrorBoundary.js +16 -0
  294. package/esm/ui/ErrorMessage.js +56 -0
  295. package/esm/ui/ErrorMessageStackTraceContents.d.ts +4 -0
  296. package/esm/ui/ErrorMessageStackTraceContents.js +25 -0
  297. package/esm/ui/ErrorMessageStackTraceDialog.js +108 -0
  298. package/esm/ui/ExternalLink.js +7 -0
  299. package/esm/ui/FactoryResetDialog.js +18 -0
  300. package/esm/ui/FatalErrorDialog.js +18 -0
  301. package/esm/ui/FileSelector/FileSelector.d.ts +11 -0
  302. package/esm/ui/FileSelector/FileSelector.js +52 -0
  303. package/esm/ui/FileSelector/LocalFileChooser.d.ts +6 -0
  304. package/esm/ui/FileSelector/LocalFileChooser.js +39 -0
  305. package/esm/ui/FileSelector/LocationInput.d.ts +9 -0
  306. package/esm/ui/FileSelector/LocationInput.js +15 -0
  307. package/esm/ui/FileSelector/SourceTypeSelector.d.ts +9 -0
  308. package/esm/ui/FileSelector/SourceTypeSelector.js +38 -0
  309. package/esm/ui/FileSelector/UrlChooser.d.ts +8 -0
  310. package/esm/ui/FileSelector/UrlChooser.js +17 -0
  311. package/esm/ui/FileSelector/index.d.ts +1 -0
  312. package/esm/ui/FileSelector/index.js +1 -0
  313. package/esm/ui/FileSelector/useInternetAccounts.d.ts +178 -0
  314. package/esm/ui/FileSelector/useInternetAccounts.js +18 -0
  315. package/esm/ui/HoverMenu.js +15 -0
  316. package/esm/ui/Icons.js +14 -0
  317. package/esm/ui/LoadingEllipses.js +31 -0
  318. package/esm/ui/Logo.js +42 -0
  319. package/esm/ui/Menu.d.ts +2 -0
  320. package/esm/ui/Menu.js +1 -0
  321. package/esm/ui/MenuButton.d.ts +1 -0
  322. package/esm/ui/MenuButton.js +1 -0
  323. package/esm/ui/MenuItems.d.ts +15 -0
  324. package/esm/ui/MenuItems.js +59 -0
  325. package/esm/ui/MenuTypes.d.ts +39 -0
  326. package/esm/ui/MenuTypes.js +1 -0
  327. package/esm/ui/PrerenderedCanvas.d.ts +10 -0
  328. package/esm/ui/PrerenderedCanvas.js +33 -0
  329. package/esm/ui/RedErrorMessageBox.js +16 -0
  330. package/esm/ui/ResizeHandle.js +67 -0
  331. package/esm/ui/ReturnToImportFormDialog.js +13 -0
  332. package/esm/ui/SanitizedHTML.js +61 -0
  333. package/esm/ui/Snackbar.d.ts +10 -0
  334. package/esm/ui/Snackbar.js +14 -0
  335. package/esm/ui/SnackbarContents.d.ts +5 -0
  336. package/esm/ui/SnackbarContents.js +11 -0
  337. package/esm/ui/SnackbarModel.d.ts +17 -0
  338. package/esm/ui/SnackbarModel.js +55 -0
  339. package/esm/ui/colors.js +67 -0
  340. package/esm/ui/index.d.ts +20 -0
  341. package/esm/ui/index.js +20 -0
  342. package/esm/ui/react-colorful.d.ts +3 -0
  343. package/esm/ui/react-colorful.js +416 -0
  344. package/esm/ui/theme.d.ts +58 -0
  345. package/esm/ui/theme.js +392 -0
  346. package/esm/ui/useEvent.js +10 -0
  347. package/esm/util/Base1DUtils.d.ts +38 -0
  348. package/esm/util/Base1DUtils.js +205 -0
  349. package/esm/util/Base1DViewModel.d.ts +61 -0
  350. package/esm/util/Base1DViewModel.js +129 -0
  351. package/esm/util/QuickLRU/index.d.ts +1 -0
  352. package/esm/util/QuickLRU/index.js +1 -0
  353. package/esm/util/TimeTraveller.d.ts +19 -0
  354. package/esm/util/TimeTraveller.js +94 -0
  355. package/esm/util/aborting.js +42 -0
  356. package/esm/util/analytics.js +80 -0
  357. package/esm/util/blobToDataURL.js +14 -0
  358. package/esm/util/blockTypes.d.ts +59 -0
  359. package/esm/util/blockTypes.js +119 -0
  360. package/esm/util/calculateDynamicBlocks.d.ts +3 -0
  361. package/esm/util/calculateDynamicBlocks.js +104 -0
  362. package/esm/util/calculateStaticBlocks.d.ts +13 -0
  363. package/esm/util/calculateStaticBlocks.js +106 -0
  364. package/esm/util/coarseStripHTML.d.ts +1 -0
  365. package/esm/util/coarseStripHTML.js +17 -0
  366. package/esm/util/color/cssColorsLevel4.js +156 -0
  367. package/esm/util/color/index.d.ts +5 -0
  368. package/esm/util/color/index.js +39 -0
  369. package/esm/util/colord.d.ts +9 -0
  370. package/esm/util/colord.js +14 -0
  371. package/esm/util/compositeMap.js +59 -0
  372. package/esm/util/convertCodingSequenceToPeptides.d.ts +6 -0
  373. package/esm/util/convertCodingSequenceToPeptides.js +9 -0
  374. package/esm/util/dedupe.js +12 -0
  375. package/esm/util/fetchSeq.d.ts +8 -0
  376. package/esm/util/fetchSeq.js +23 -0
  377. package/esm/util/flatbush/index.d.ts +25 -0
  378. package/esm/util/flatbush/index.js +423 -0
  379. package/esm/util/flatqueue/index.js +61 -0
  380. package/esm/util/formatFastaStrings.js +8 -0
  381. package/esm/util/idMaker.js +21 -0
  382. package/esm/util/index.d.ts +271 -0
  383. package/esm/util/index.js +873 -0
  384. package/esm/util/io/RemoteFileWithRangeCache.js +71 -0
  385. package/esm/util/io/index.d.ts +7 -0
  386. package/esm/util/io/index.js +92 -0
  387. package/esm/util/isWebWorker.d.ts +1 -0
  388. package/esm/util/isWebWorker.js +4 -0
  389. package/esm/util/jexl.d.ts +2 -0
  390. package/esm/util/jexl.js +49 -0
  391. package/esm/util/jexlStrings.js +17 -0
  392. package/esm/util/layouts/BaseLayout.d.ts +30 -0
  393. package/esm/util/layouts/BaseLayout.js +1 -0
  394. package/esm/util/layouts/GranularRectLayout.d.ts +37 -0
  395. package/esm/util/layouts/GranularRectLayout.js +418 -0
  396. package/esm/util/layouts/MultiLayout.d.ts +12 -0
  397. package/esm/util/layouts/MultiLayout.js +40 -0
  398. package/esm/util/layouts/PileupLayout.d.ts +41 -0
  399. package/esm/util/layouts/PileupLayout.js +202 -0
  400. package/esm/util/layouts/PrecomputedLayout.d.ts +30 -0
  401. package/esm/util/layouts/PrecomputedLayout.js +71 -0
  402. package/esm/util/layouts/SceneGraph.js +121 -0
  403. package/esm/util/layouts/index.d.ts +8 -0
  404. package/esm/util/layouts/index.js +6 -0
  405. package/esm/util/layouts/intervalUtils.d.ts +3 -0
  406. package/esm/util/layouts/intervalUtils.js +63 -0
  407. package/esm/util/librpc.d.ts +2 -0
  408. package/esm/util/librpc.js +1 -0
  409. package/esm/util/linkify.d.ts +1 -0
  410. package/esm/util/linkify.js +5 -0
  411. package/esm/util/locString.d.ts +9 -0
  412. package/esm/util/locString.js +62 -0
  413. package/esm/util/makeAbortableReaction.d.ts +3 -0
  414. package/esm/util/makeAbortableReaction.js +47 -0
  415. package/esm/util/map-obj/index.d.ts +13 -0
  416. package/esm/util/map-obj/index.js +92 -0
  417. package/esm/util/mst-reflection.d.ts +11 -0
  418. package/esm/util/mst-reflection.js +54 -0
  419. package/esm/util/nanoid.d.ts +5 -0
  420. package/esm/util/nanoid.js +36 -0
  421. package/esm/util/nextTick.js +3 -0
  422. package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +5 -0
  423. package/esm/util/offscreenCanvasGetSerializingSvg.js +9 -0
  424. package/esm/util/offscreenCanvasPonyfill.d.ts +5 -0
  425. package/esm/util/offscreenCanvasPonyfill.js +57 -0
  426. package/esm/util/offscreenCanvasUtils.d.ts +12 -0
  427. package/esm/util/offscreenCanvasUtils.js +19 -0
  428. package/esm/util/parseLineByLine.js +22 -0
  429. package/esm/util/range.js +21 -0
  430. package/esm/util/renderToAbstractCanvas.d.ts +17 -0
  431. package/esm/util/renderToAbstractCanvas.js +53 -0
  432. package/esm/util/rpc.d.ts +2 -0
  433. package/esm/util/rpc.js +6 -0
  434. package/esm/util/rxjs.d.ts +4 -0
  435. package/esm/util/rxjs.js +16 -0
  436. package/esm/util/simpleFeature.d.ts +44 -0
  437. package/esm/util/simpleFeature.js +81 -0
  438. package/esm/util/stats.d.ts +23 -0
  439. package/esm/util/stats.js +72 -0
  440. package/esm/util/stopToken.d.ts +19 -0
  441. package/esm/util/stopToken.js +90 -0
  442. package/esm/util/tracks.d.ts +72 -0
  443. package/esm/util/tracks.js +214 -0
  444. package/esm/util/transferables.d.ts +2 -0
  445. package/esm/util/transferables.js +35 -0
  446. package/esm/util/tss-react/cssAndCx.d.ts +16 -0
  447. package/esm/util/tss-react/cssAndCx.js +97 -0
  448. package/esm/util/tss-react/index.d.ts +4 -0
  449. package/esm/util/tss-react/index.js +7 -0
  450. package/esm/util/tss-react/makeStyles.d.ts +15 -0
  451. package/esm/util/tss-react/makeStyles.js +38 -0
  452. package/esm/util/tss-react/mergeClasses.d.ts +2 -0
  453. package/esm/util/tss-react/mergeClasses.js +24 -0
  454. package/esm/util/tss-react/mui/index.d.ts +1 -0
  455. package/esm/util/tss-react/mui/index.js +1 -0
  456. package/esm/util/tss-react/mui/mui.d.ts +10 -0
  457. package/esm/util/tss-react/mui/mui.js +5 -0
  458. package/esm/util/tss-react/tools/classnames.d.ts +2 -0
  459. package/esm/util/tss-react/tools/classnames.js +44 -0
  460. package/esm/util/tss-react/tools/getDependencyArrayRef.d.ts +1 -0
  461. package/esm/util/tss-react/tools/getDependencyArrayRef.js +19 -0
  462. package/esm/util/tss-react/types.d.ts +13 -0
  463. package/esm/util/tss-react/types.js +6 -0
  464. package/esm/util/types/ElementId.d.ts +1 -0
  465. package/esm/util/types/ElementId.js +3 -0
  466. package/esm/util/types/index.d.ts +273 -0
  467. package/esm/util/types/index.js +131 -0
  468. package/esm/util/types/mst.d.ts +107 -0
  469. package/esm/util/types/mst.js +68 -0
  470. package/esm/util/types/util.d.ts +6 -0
  471. package/esm/util/types/util.js +1 -0
  472. package/esm/util/useFeatureSequence.d.ts +19 -0
  473. package/esm/util/useFeatureSequence.js +87 -0
  474. package/esm/util/useMeasure.js +30 -0
  475. package/esm/util/when.js +1 -0
  476. package/package.json +487 -38
  477. package/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +0 -38
  478. package/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +0 -13
  479. package/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +0 -48
  480. package/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +0 -8
  481. package/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +0 -13
  482. package/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +0 -2
  483. package/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +0 -23
  484. package/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +0 -2
  485. package/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +0 -13
  486. package/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +0 -23
  487. package/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +0 -2
  488. package/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +0 -30
  489. package/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +0 -63
  490. package/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +0 -11
  491. package/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +0 -48
  492. package/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +0 -27
  493. package/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +0 -2
  494. package/BaseFeatureWidget/BaseFeatureDetail/Position.js +0 -17
  495. package/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +0 -20
  496. package/BaseFeatureWidget/BaseFeatureDetail/UriField.js +0 -28
  497. package/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +0 -7
  498. package/BaseFeatureWidget/BaseFeatureDetail/index.js +0 -34
  499. package/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +0 -7
  500. package/BaseFeatureWidget/BaseFeatureDetail/types.js +0 -2
  501. package/BaseFeatureWidget/BaseFeatureDetail/util.js +0 -32
  502. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +0 -10
  503. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +0 -46
  504. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +0 -7
  505. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +0 -82
  506. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +0 -7
  507. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +0 -72
  508. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +0 -8
  509. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +0 -28
  510. package/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +0 -3
  511. package/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +0 -34
  512. package/BaseFeatureWidget/SequenceFeatureDetails/consts.js +0 -9
  513. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +0 -17
  514. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +0 -8
  515. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +0 -50
  516. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +0 -8
  517. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +0 -141
  518. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +0 -5
  519. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +0 -66
  520. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +0 -6
  521. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +0 -50
  522. package/BaseFeatureWidget/SequenceFeatureDetails/index.d.ts +0 -1
  523. package/BaseFeatureWidget/SequenceFeatureDetails/index.js +0 -8
  524. package/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +0 -31
  525. package/BaseFeatureWidget/SequenceFeatureDetails/model.js +0 -81
  526. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +0 -16
  527. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +0 -89
  528. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +0 -8
  529. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +0 -21
  530. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +0 -10
  531. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +0 -57
  532. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +0 -9
  533. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +0 -26
  534. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +0 -10
  535. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +0 -25
  536. package/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
  537. package/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -585
  538. package/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
  539. package/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1118
  540. package/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +0 -8
  541. package/BaseFeatureWidget/SequenceFeatureDetails/types.js +0 -2
  542. package/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +0 -13
  543. package/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +0 -67
  544. package/BaseFeatureWidget/SequenceFeatureDetails/util.js +0 -46
  545. package/BaseFeatureWidget/configSchema.d.ts +0 -2
  546. package/BaseFeatureWidget/configSchema.js +0 -6
  547. package/BaseFeatureWidget/index.d.ts +0 -2
  548. package/BaseFeatureWidget/index.js +0 -7
  549. package/BaseFeatureWidget/stateModelFactory.d.ts +0 -101
  550. package/BaseFeatureWidget/stateModelFactory.js +0 -99
  551. package/BaseFeatureWidget/types.d.ts +0 -22
  552. package/BaseFeatureWidget/types.js +0 -2
  553. package/BaseFeatureWidget/util.d.ts +0 -51
  554. package/BaseFeatureWidget/util.js +0 -106
  555. package/CorePlugin.d.ts +0 -6
  556. package/CorePlugin.js +0 -66
  557. package/PhasedScheduler.js +0 -28
  558. package/Plugin.d.ts +0 -13
  559. package/Plugin.js +0 -7
  560. package/PluginLoader.d.ts +0 -64
  561. package/PluginLoader.js +0 -174
  562. package/PluginManager.d.ts +0 -139
  563. package/PluginManager.js +0 -405
  564. package/ReExports/BaseFeatureDetails.js +0 -45
  565. package/ReExports/DataGrid.js +0 -5
  566. package/ReExports/MuiDataGridReExports.js +0 -167
  567. package/ReExports/MuiReExports.d.ts +0 -133
  568. package/ReExports/MuiReExports.js +0 -150
  569. package/ReExports/index.d.ts +0 -1
  570. package/ReExports/index.js +0 -8
  571. package/ReExports/lazify.js +0 -14
  572. package/ReExports/list.js +0 -273
  573. package/ReExports/material-ui-colors.d.ts +0 -1
  574. package/ReExports/material-ui-colors.js +0 -17
  575. package/ReExports/modules.js +0 -179
  576. package/TextSearch/BaseResults.d.ts +0 -46
  577. package/TextSearch/BaseResults.js +0 -61
  578. package/TextSearch/TextSearchManager.d.ts +0 -48
  579. package/TextSearch/TextSearchManager.js +0 -85
  580. package/assemblyManager/assembly.d.ts +0 -72
  581. package/assemblyManager/assembly.js +0 -307
  582. package/assemblyManager/assemblyConfigSchema.d.ts +0 -27
  583. package/assemblyManager/assemblyConfigSchema.js +0 -53
  584. package/assemblyManager/assemblyManager.d.ts +0 -507
  585. package/assemblyManager/assemblyManager.js +0 -138
  586. package/assemblyManager/index.d.ts +0 -3
  587. package/assemblyManager/index.js +0 -10
  588. package/configuration/configurationSchema.d.ts +0 -35
  589. package/configuration/configurationSchema.js +0 -174
  590. package/configuration/configurationSlot.d.ts +0 -31
  591. package/configuration/configurationSlot.js +0 -241
  592. package/configuration/index.d.ts +0 -3
  593. package/configuration/index.js +0 -21
  594. package/configuration/types.d.ts +0 -14
  595. package/configuration/types.js +0 -2
  596. package/configuration/util.d.ts +0 -10
  597. package/configuration/util.js +0 -123
  598. package/data_adapters/BaseAdapter/BaseAdapter.d.ts +0 -14
  599. package/data_adapters/BaseAdapter/BaseAdapter.js +0 -30
  600. package/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +0 -24
  601. package/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +0 -115
  602. package/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -15
  603. package/data_adapters/BaseAdapter/BaseOptions.js +0 -2
  604. package/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +0 -10
  605. package/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.js +0 -2
  606. package/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +0 -10
  607. package/data_adapters/BaseAdapter/BaseSequenceAdapter.js +0 -10
  608. package/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +0 -6
  609. package/data_adapters/BaseAdapter/BaseTextSearchAdapter.js +0 -2
  610. package/data_adapters/BaseAdapter/RegionsAdapter.d.ts +0 -6
  611. package/data_adapters/BaseAdapter/RegionsAdapter.js +0 -2
  612. package/data_adapters/BaseAdapter/index.d.ts +0 -13
  613. package/data_adapters/BaseAdapter/index.js +0 -25
  614. package/data_adapters/BaseAdapter/types.d.ts +0 -21
  615. package/data_adapters/BaseAdapter/types.js +0 -2
  616. package/data_adapters/BaseAdapter/util.d.ts +0 -12
  617. package/data_adapters/BaseAdapter/util.js +0 -22
  618. package/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +0 -6
  619. package/data_adapters/CytobandAdapter/CytobandAdapter.js +0 -31
  620. package/data_adapters/CytobandAdapter/configSchema.d.ts +0 -9
  621. package/data_adapters/CytobandAdapter/configSchema.js +0 -26
  622. package/data_adapters/CytobandAdapter/index.d.ts +0 -2
  623. package/data_adapters/CytobandAdapter/index.js +0 -51
  624. package/data_adapters/dataAdapterCache.d.ts +0 -14
  625. package/data_adapters/dataAdapterCache.js +0 -60
  626. package/data_adapters/util.js +0 -10
  627. package/pluggableElementTypes/AdapterType.d.ts +0 -25
  628. package/pluggableElementTypes/AdapterType.js +0 -19
  629. package/pluggableElementTypes/AddTrackWorkflowType.d.ts +0 -17
  630. package/pluggableElementTypes/AddTrackWorkflowType.js +0 -14
  631. package/pluggableElementTypes/ConnectionType.d.ts +0 -20
  632. package/pluggableElementTypes/ConnectionType.js +0 -17
  633. package/pluggableElementTypes/DisplayType.d.ts +0 -28
  634. package/pluggableElementTypes/DisplayType.js +0 -18
  635. package/pluggableElementTypes/InternetAccountType.d.ts +0 -12
  636. package/pluggableElementTypes/InternetAccountType.js +0 -14
  637. package/pluggableElementTypes/PluggableElementBase.js +0 -12
  638. package/pluggableElementTypes/RpcMethodType.d.ts +0 -17
  639. package/pluggableElementTypes/RpcMethodType.js +0 -69
  640. package/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +0 -11
  641. package/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +0 -35
  642. package/pluggableElementTypes/TextSearchAdapterType.d.ts +0 -18
  643. package/pluggableElementTypes/TextSearchAdapterType.js +0 -18
  644. package/pluggableElementTypes/TrackType.d.ts +0 -16
  645. package/pluggableElementTypes/TrackType.js +0 -18
  646. package/pluggableElementTypes/ViewType.d.ts +0 -29
  647. package/pluggableElementTypes/ViewType.js +0 -21
  648. package/pluggableElementTypes/WidgetType.d.ts +0 -25
  649. package/pluggableElementTypes/WidgetType.js +0 -17
  650. package/pluggableElementTypes/index.d.ts +0 -26
  651. package/pluggableElementTypes/index.js +0 -44
  652. package/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +0 -29
  653. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +0 -38
  654. package/pluggableElementTypes/models/BaseDisplayModel.d.ts +0 -68
  655. package/pluggableElementTypes/models/BaseDisplayModel.js +0 -81
  656. package/pluggableElementTypes/models/BaseTrackModel.d.ts +0 -53
  657. package/pluggableElementTypes/models/BaseTrackModel.js +0 -145
  658. package/pluggableElementTypes/models/BaseViewModel.d.ts +0 -42
  659. package/pluggableElementTypes/models/BaseViewModel.js +0 -35
  660. package/pluggableElementTypes/models/InternetAccountModel.d.ts +0 -86
  661. package/pluggableElementTypes/models/InternetAccountModel.js +0 -155
  662. package/pluggableElementTypes/models/baseConnectionConfig.d.ts +0 -16
  663. package/pluggableElementTypes/models/baseConnectionConfig.js +0 -20
  664. package/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +0 -27
  665. package/pluggableElementTypes/models/baseInternetAccountConfig.js +0 -35
  666. package/pluggableElementTypes/models/baseTrackConfig.d.ts +0 -82
  667. package/pluggableElementTypes/models/baseTrackConfig.js +0 -135
  668. package/pluggableElementTypes/models/index.d.ts +0 -13
  669. package/pluggableElementTypes/models/index.js +0 -22
  670. package/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -60
  671. package/pluggableElementTypes/renderers/BoxRendererType.js +0 -102
  672. package/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -26
  673. package/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -34
  674. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.d.ts +0 -38
  675. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +0 -65
  676. package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -51
  677. package/pluggableElementTypes/renderers/FeatureRendererType.js +0 -85
  678. package/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -25
  679. package/pluggableElementTypes/renderers/LayoutSession.js +0 -42
  680. package/pluggableElementTypes/renderers/RendererType.d.ts +0 -25
  681. package/pluggableElementTypes/renderers/RendererType.js +0 -23
  682. package/pluggableElementTypes/renderers/RpcRenderedSvgGroup.d.ts +0 -9
  683. package/pluggableElementTypes/renderers/RpcRenderedSvgGroup.js +0 -9
  684. package/pluggableElementTypes/renderers/ServerSideRenderedContent.d.ts +0 -6
  685. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +0 -8
  686. package/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -49
  687. package/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -81
  688. package/pluggableElementTypes/renderers/index.d.ts +0 -7
  689. package/pluggableElementTypes/renderers/index.js +0 -20
  690. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +0 -32
  691. package/rpc/BaseRpcDriver.d.ts +0 -43
  692. package/rpc/BaseRpcDriver.js +0 -113
  693. package/rpc/MainThreadRpcDriver.d.ts +0 -14
  694. package/rpc/MainThreadRpcDriver.js +0 -32
  695. package/rpc/RpcManager.d.ts +0 -34
  696. package/rpc/RpcManager.js +0 -69
  697. package/rpc/WebWorkerRpcDriver.d.ts +0 -29
  698. package/rpc/WebWorkerRpcDriver.js +0 -65
  699. package/rpc/baseRpcConfig.d.ts +0 -8
  700. package/rpc/baseRpcConfig.js +0 -12
  701. package/rpc/configSchema.d.ts +0 -9
  702. package/rpc/configSchema.js +0 -27
  703. package/rpc/coreRpcMethods.d.ts +0 -9
  704. package/rpc/coreRpcMethods.js +0 -22
  705. package/rpc/mainThreadRpcConfig.d.ts +0 -8
  706. package/rpc/mainThreadRpcConfig.js +0 -13
  707. package/rpc/methods/CoreFreeResources.d.ts +0 -6
  708. package/rpc/methods/CoreFreeResources.js +0 -23
  709. package/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
  710. package/rpc/methods/CoreGetFeatureDensityStats.js +0 -36
  711. package/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
  712. package/rpc/methods/CoreGetFeatureDetails.js +0 -38
  713. package/rpc/methods/CoreGetFeatures.d.ts +0 -18
  714. package/rpc/methods/CoreGetFeatures.js +0 -40
  715. package/rpc/methods/CoreGetFileInfo.d.ts +0 -9
  716. package/rpc/methods/CoreGetFileInfo.js +0 -24
  717. package/rpc/methods/CoreGetMetadata.d.ts +0 -9
  718. package/rpc/methods/CoreGetMetadata.js +0 -24
  719. package/rpc/methods/CoreGetRefNames.d.ts +0 -9
  720. package/rpc/methods/CoreGetRefNames.js +0 -25
  721. package/rpc/methods/CoreRender.d.ts +0 -10
  722. package/rpc/methods/CoreRender.js +0 -46
  723. package/rpc/methods/util.d.ts +0 -15
  724. package/rpc/methods/util.js +0 -9
  725. package/rpc/webWorkerRpcConfig.d.ts +0 -8
  726. package/rpc/webWorkerRpcConfig.js +0 -13
  727. package/stories/JBrowseCore.stories.d.ts +0 -5
  728. package/stories/JBrowseCore.stories.js +0 -10
  729. package/stories/examples/WithSequencePanel.d.ts +0 -6
  730. package/stories/examples/WithSequencePanel.js +0 -42
  731. package/stories/examples/index.d.ts +0 -1
  732. package/stories/examples/index.js +0 -17
  733. package/stories/examples/util.d.ts +0 -33
  734. package/stories/examples/util.js +0 -235
  735. package/tsconfig.build.tsbuildinfo +0 -1
  736. package/ui/AppLogo.d.ts +0 -7
  737. package/ui/AppLogo.js +0 -12
  738. package/ui/AssemblySelector.d.ts +0 -13
  739. package/ui/AssemblySelector.js +0 -46
  740. package/ui/BaseTooltip.js +0 -46
  741. package/ui/CascadingMenu.d.ts +0 -9
  742. package/ui/CascadingMenu.js +0 -114
  743. package/ui/CascadingMenuButton.d.ts +0 -11
  744. package/ui/CascadingMenuButton.js +0 -29
  745. package/ui/ColorPicker.js +0 -101
  746. package/ui/ConfirmDialog.js +0 -18
  747. package/ui/DataGridFlexContainer.d.ts +0 -3
  748. package/ui/DataGridFlexContainer.js +0 -15
  749. package/ui/Dialog.d.ts +0 -7
  750. package/ui/Dialog.js +0 -50
  751. package/ui/DraggableDialog.js +0 -32
  752. package/ui/DropDownMenu.d.ts +0 -8
  753. package/ui/DropDownMenu.js +0 -37
  754. package/ui/EditableTypography.js +0 -65
  755. package/ui/ErrorBoundary.d.ts +0 -17
  756. package/ui/ErrorBoundary.js +0 -19
  757. package/ui/ErrorMessage.js +0 -94
  758. package/ui/ErrorMessageStackTraceDialog.js +0 -149
  759. package/ui/ExternalLink.js +0 -13
  760. package/ui/FactoryResetDialog.js +0 -24
  761. package/ui/FatalErrorDialog.js +0 -24
  762. package/ui/FileSelector/FileSelector.d.ts +0 -11
  763. package/ui/FileSelector/FileSelector.js +0 -102
  764. package/ui/FileSelector/LocalFileChooser.d.ts +0 -6
  765. package/ui/FileSelector/LocalFileChooser.js +0 -42
  766. package/ui/FileSelector/UrlChooser.d.ts +0 -8
  767. package/ui/FileSelector/UrlChooser.js +0 -19
  768. package/ui/FileSelector/index.d.ts +0 -1
  769. package/ui/FileSelector/index.js +0 -8
  770. package/ui/HoverMenu.js +0 -50
  771. package/ui/Icons.js +0 -23
  772. package/ui/LoadingEllipses.js +0 -35
  773. package/ui/Logo.js +0 -46
  774. package/ui/Menu.d.ts +0 -54
  775. package/ui/Menu.js +0 -233
  776. package/ui/MenuButton.d.ts +0 -10
  777. package/ui/MenuButton.js +0 -28
  778. package/ui/PrerenderedCanvas.d.ts +0 -10
  779. package/ui/PrerenderedCanvas.js +0 -34
  780. package/ui/RedErrorMessageBox.js +0 -19
  781. package/ui/ResizeHandle.js +0 -72
  782. package/ui/ReturnToImportFormDialog.js +0 -18
  783. package/ui/SanitizedHTML.js +0 -67
  784. package/ui/Snackbar.d.ts +0 -10
  785. package/ui/Snackbar.js +0 -49
  786. package/ui/SnackbarContents.d.ts +0 -5
  787. package/ui/SnackbarContents.js +0 -16
  788. package/ui/SnackbarModel.d.ts +0 -17
  789. package/ui/SnackbarModel.js +0 -96
  790. package/ui/colors.js +0 -78
  791. package/ui/hooks.d.ts +0 -66
  792. package/ui/hooks.js +0 -185
  793. package/ui/index.d.ts +0 -19
  794. package/ui/index.js +0 -56
  795. package/ui/react-colorful.d.ts +0 -17
  796. package/ui/react-colorful.js +0 -466
  797. package/ui/theme.d.ts +0 -59
  798. package/ui/theme.js +0 -381
  799. package/ui/useEvent.js +0 -47
  800. package/util/Base1DUtils.d.ts +0 -38
  801. package/util/Base1DUtils.js +0 -198
  802. package/util/Base1DViewModel.d.ts +0 -61
  803. package/util/Base1DViewModel.js +0 -135
  804. package/util/QuickLRU.d.ts +0 -32
  805. package/util/QuickLRU.js +0 -237
  806. package/util/TimeTraveller.d.ts +0 -19
  807. package/util/TimeTraveller.js +0 -90
  808. package/util/aborting.js +0 -48
  809. package/util/analytics.js +0 -86
  810. package/util/blobToDataURL.js +0 -17
  811. package/util/blockTypes.d.ts +0 -58
  812. package/util/blockTypes.js +0 -110
  813. package/util/calculateDynamicBlocks.d.ts +0 -3
  814. package/util/calculateDynamicBlocks.js +0 -100
  815. package/util/calculateStaticBlocks.d.ts +0 -13
  816. package/util/calculateStaticBlocks.js +0 -102
  817. package/util/cluster.d.ts +0 -17
  818. package/util/cluster.js +0 -102
  819. package/util/color/cssColorsLevel4.js +0 -160
  820. package/util/color/index.d.ts +0 -5
  821. package/util/color/index.js +0 -48
  822. package/util/colord.d.ts +0 -1
  823. package/util/colord.js +0 -13
  824. package/util/compositeMap.js +0 -61
  825. package/util/convertCodingSequenceToPeptides.d.ts +0 -6
  826. package/util/convertCodingSequenceToPeptides.js +0 -12
  827. package/util/dedupe.js +0 -15
  828. package/util/fetchSeq.d.ts +0 -8
  829. package/util/fetchSeq.js +0 -27
  830. package/util/flatbush/index.d.ts +0 -25
  831. package/util/flatbush/index.js +0 -362
  832. package/util/flatqueue/index.js +0 -66
  833. package/util/formatFastaStrings.js +0 -12
  834. package/util/idMaker.js +0 -24
  835. package/util/index.d.ts +0 -274
  836. package/util/index.js +0 -1052
  837. package/util/io/RemoteFileWithRangeCache.js +0 -76
  838. package/util/io/index.d.ts +0 -7
  839. package/util/io/index.js +0 -103
  840. package/util/jexl.d.ts +0 -4
  841. package/util/jexl.js +0 -55
  842. package/util/jexlStrings.js +0 -23
  843. package/util/layouts/BaseLayout.d.ts +0 -30
  844. package/util/layouts/BaseLayout.js +0 -2
  845. package/util/layouts/GranularRectLayout.d.ts +0 -37
  846. package/util/layouts/GranularRectLayout.js +0 -343
  847. package/util/layouts/MultiLayout.d.ts +0 -12
  848. package/util/layouts/MultiLayout.js +0 -42
  849. package/util/layouts/PrecomputedLayout.d.ts +0 -30
  850. package/util/layouts/PrecomputedLayout.js +0 -75
  851. package/util/layouts/PrecomputedMultiLayout.d.ts +0 -4
  852. package/util/layouts/PrecomputedMultiLayout.js +0 -21
  853. package/util/layouts/SceneGraph.js +0 -115
  854. package/util/layouts/index.d.ts +0 -7
  855. package/util/layouts/index.js +0 -31
  856. package/util/makeAbortableReaction.d.ts +0 -2
  857. package/util/makeAbortableReaction.js +0 -50
  858. package/util/map-obj.d.ts +0 -3
  859. package/util/map-obj.js +0 -37
  860. package/util/mst-reflection.d.ts +0 -11
  861. package/util/mst-reflection.js +0 -62
  862. package/util/nanoid.d.ts +0 -5
  863. package/util/nanoid.js +0 -43
  864. package/util/nextTick.js +0 -6
  865. package/util/offscreenCanvasPonyfill.d.ts +0 -7
  866. package/util/offscreenCanvasPonyfill.js +0 -65
  867. package/util/offscreenCanvasUtils.d.ts +0 -28
  868. package/util/offscreenCanvasUtils.js +0 -99
  869. package/util/parseLineByLine.js +0 -25
  870. package/util/range.js +0 -26
  871. package/util/rxjs.d.ts +0 -3
  872. package/util/rxjs.js +0 -21
  873. package/util/simpleFeature.d.ts +0 -44
  874. package/util/simpleFeature.js +0 -82
  875. package/util/stats.d.ts +0 -21
  876. package/util/stats.js +0 -78
  877. package/util/stopToken.d.ts +0 -3
  878. package/util/stopToken.js +0 -29
  879. package/util/tracks.d.ts +0 -55
  880. package/util/tracks.js +0 -168
  881. package/util/types/index.d.ts +0 -254
  882. package/util/types/index.js +0 -172
  883. package/util/types/mst.d.ts +0 -107
  884. package/util/types/mst.js +0 -72
  885. package/util/types/util.d.ts +0 -6
  886. package/util/types/util.js +0 -2
  887. package/util/useFeatureSequence.d.ts +0 -19
  888. package/util/useFeatureSequence.js +0 -90
  889. package/util/useMeasure.js +0 -33
  890. package/util/when.js +0 -5
  891. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/ArrayValue.d.ts +0 -0
  892. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/BasicValue.d.ts +0 -0
  893. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/DataGridDetails.d.ts +0 -0
  894. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/FieldName.d.ts +0 -0
  895. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/SimpleField.d.ts +0 -0
  896. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/UriField.d.ts +0 -0
  897. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/util.d.ts +0 -0
  898. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/consts.d.ts +0 -0
  899. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +0 -0
  900. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/util.d.ts +0 -0
  901. /package/{PhasedScheduler.d.ts → esm/PhasedScheduler.d.ts} +0 -0
  902. /package/{ReExports → esm/ReExports}/BaseFeatureDetails.d.ts +0 -0
  903. /package/{ReExports → esm/ReExports}/DataGrid.d.ts +0 -0
  904. /package/{ReExports → esm/ReExports}/MuiDataGridReExports.d.ts +0 -0
  905. /package/{ReExports → esm/ReExports}/lazify.d.ts +0 -0
  906. /package/{ReExports → esm/ReExports}/list.d.ts +0 -0
  907. /package/{ReExports → esm/ReExports}/modules.d.ts +0 -0
  908. /package/{data_adapters → esm/data_adapters}/util.d.ts +0 -0
  909. /package/{pluggableElementTypes → esm/pluggableElementTypes}/PluggableElementBase.d.ts +0 -0
  910. /package/{pluggableElementTypes → esm/pluggableElementTypes}/renderers/util/serializableFilterChain.d.ts +0 -0
  911. /package/{ui → esm/ui}/BaseTooltip.d.ts +0 -0
  912. /package/{ui → esm/ui}/ColorPicker.d.ts +0 -0
  913. /package/{ui → esm/ui}/ConfirmDialog.d.ts +0 -0
  914. /package/{ui → esm/ui}/DraggableDialog.d.ts +0 -0
  915. /package/{ui → esm/ui}/EditableTypography.d.ts +0 -0
  916. /package/{ui → esm/ui}/ErrorMessage.d.ts +0 -0
  917. /package/{ui → esm/ui}/ErrorMessageStackTraceDialog.d.ts +0 -0
  918. /package/{ui → esm/ui}/ExternalLink.d.ts +0 -0
  919. /package/{ui → esm/ui}/FactoryResetDialog.d.ts +0 -0
  920. /package/{ui → esm/ui}/FatalErrorDialog.d.ts +0 -0
  921. /package/{ui → esm/ui}/HoverMenu.d.ts +0 -0
  922. /package/{ui → esm/ui}/Icons.d.ts +0 -0
  923. /package/{ui → esm/ui}/LoadingEllipses.d.ts +0 -0
  924. /package/{ui → esm/ui}/Logo.d.ts +0 -0
  925. /package/{ui → esm/ui}/RedErrorMessageBox.d.ts +0 -0
  926. /package/{ui → esm/ui}/ResizeHandle.d.ts +0 -0
  927. /package/{ui → esm/ui}/ReturnToImportFormDialog.d.ts +0 -0
  928. /package/{ui → esm/ui}/SanitizedHTML.d.ts +0 -0
  929. /package/{ui → esm/ui}/colors.d.ts +0 -0
  930. /package/{ui → esm/ui}/useEvent.d.ts +0 -0
  931. /package/{util → esm/util}/aborting.d.ts +0 -0
  932. /package/{util → esm/util}/analytics.d.ts +0 -0
  933. /package/{util → esm/util}/blobToDataURL.d.ts +0 -0
  934. /package/{util → esm/util}/color/cssColorsLevel4.d.ts +0 -0
  935. /package/{util → esm/util}/compositeMap.d.ts +0 -0
  936. /package/{util → esm/util}/dedupe.d.ts +0 -0
  937. /package/{util → esm/util}/flatqueue/index.d.ts +0 -0
  938. /package/{util → esm/util}/formatFastaStrings.d.ts +0 -0
  939. /package/{util → esm/util}/idMaker.d.ts +0 -0
  940. /package/{util → esm/util}/io/RemoteFileWithRangeCache.d.ts +0 -0
  941. /package/{util → esm/util}/jexlStrings.d.ts +0 -0
  942. /package/{util → esm/util}/layouts/SceneGraph.d.ts +0 -0
  943. /package/{util → esm/util}/nextTick.d.ts +0 -0
  944. /package/{util → esm/util}/parseLineByLine.d.ts +0 -0
  945. /package/{util → esm/util}/range.d.ts +0 -0
  946. /package/{util → esm/util}/useMeasure.d.ts +0 -0
  947. /package/{util → esm/util}/when.d.ts +0 -0
@@ -1,507 +0,0 @@
1
- import type { AnyConfigurationModel } from '../configuration';
2
- import type { Assembly } from './assembly';
3
- import type PluginManager from '../PluginManager';
4
- import type RpcManager from '../rpc/RpcManager';
5
- import type { IAnyType } from 'mobx-state-tree';
6
- type AdapterConf = Record<string, unknown>;
7
- declare function assemblyManagerFactory(conf: IAnyType, pm: PluginManager): import("mobx-state-tree").IModelType<{
8
- assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
9
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
10
- }, {
11
- error: unknown;
12
- loadingP: Promise<void> | undefined;
13
- volatileRegions: import("./assembly").BasicRegion[] | undefined;
14
- refNameAliases: {
15
- [x: string]: string;
16
- } | undefined;
17
- cytobands: import("../util").Feature[] | undefined;
18
- } & {
19
- getConf(arg: string): any;
20
- readonly lowerCaseRefNameAliases: {
21
- [k: string]: string;
22
- } | undefined;
23
- } & {
24
- readonly initialized: boolean;
25
- readonly name: string;
26
- readonly regions: import("./assembly").BasicRegion[] | undefined;
27
- readonly aliases: string[];
28
- readonly displayName: string;
29
- hasName(name: string): boolean;
30
- readonly allAliases: string[];
31
- readonly allRefNames: string[] | undefined;
32
- readonly lowerCaseRefNames: string[] | undefined;
33
- readonly allRefNamesWithLowerCase: string[] | undefined;
34
- readonly rpcManager: RpcManager;
35
- readonly refNameColors: string[];
36
- } & {
37
- readonly refNames: string[] | undefined;
38
- } & {
39
- getCanonicalRefName(refName: string): string | undefined;
40
- getCanonicalRefName2(asmName: string): string;
41
- getRefNameColor(refName: string): string | undefined;
42
- isValidRefName(refName: string): boolean;
43
- } & {
44
- setLoaded({ regions, refNameAliases, cytobands, }: {
45
- regions: import("../util").Region[];
46
- refNameAliases: {
47
- [x: string]: string;
48
- };
49
- cytobands: import("../util").Feature[];
50
- }): void;
51
- setError(e: unknown): void;
52
- setRegions(regions: import("../util").Region[]): void;
53
- setRefNameAliases(aliases: {
54
- [x: string]: string;
55
- }): void;
56
- setCytobands(cytobands: import("../util").Feature[]): void;
57
- setLoadingP(p?: Promise<void>): void;
58
- load(): Promise<void>;
59
- loadPre(): Promise<void>;
60
- } & {
61
- getAdapterMapEntry(adapterConf: {
62
- [x: string]: unknown;
63
- }, options: import("../data_adapters/BaseAdapter").BaseOptions): Promise<import("./assembly").RefNameMap>;
64
- getRefNameMapForAdapter(adapterConf: {
65
- [x: string]: unknown;
66
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
67
- [x: string]: string;
68
- }>;
69
- getReverseRefNameMapForAdapter(adapterConf: {
70
- [x: string]: unknown;
71
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
72
- [x: string]: string;
73
- }>;
74
- afterCreate(): void;
75
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
76
- }, {
77
- readonly assemblyNameMap: Record<string, {
78
- configuration: any;
79
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
80
- error: unknown;
81
- loadingP: Promise<void> | undefined;
82
- volatileRegions: import("./assembly").BasicRegion[] | undefined;
83
- refNameAliases: {
84
- [x: string]: string;
85
- } | undefined;
86
- cytobands: import("../util").Feature[] | undefined;
87
- } & {
88
- getConf(arg: string): any;
89
- readonly lowerCaseRefNameAliases: {
90
- [k: string]: string;
91
- } | undefined;
92
- } & {
93
- readonly initialized: boolean;
94
- readonly name: string;
95
- readonly regions: import("./assembly").BasicRegion[] | undefined;
96
- readonly aliases: string[];
97
- readonly displayName: string;
98
- hasName(name: string): boolean;
99
- readonly allAliases: string[];
100
- readonly allRefNames: string[] | undefined;
101
- readonly lowerCaseRefNames: string[] | undefined;
102
- readonly allRefNamesWithLowerCase: string[] | undefined;
103
- readonly rpcManager: RpcManager;
104
- readonly refNameColors: string[];
105
- } & {
106
- readonly refNames: string[] | undefined;
107
- } & {
108
- getCanonicalRefName(refName: string): string | undefined;
109
- getCanonicalRefName2(asmName: string): string;
110
- getRefNameColor(refName: string): string | undefined;
111
- isValidRefName(refName: string): boolean;
112
- } & {
113
- setLoaded({ regions, refNameAliases, cytobands, }: {
114
- regions: import("../util").Region[];
115
- refNameAliases: {
116
- [x: string]: string;
117
- };
118
- cytobands: import("../util").Feature[];
119
- }): void;
120
- setError(e: unknown): void;
121
- setRegions(regions: import("../util").Region[]): void;
122
- setRefNameAliases(aliases: {
123
- [x: string]: string;
124
- }): void;
125
- setCytobands(cytobands: import("../util").Feature[]): void;
126
- setLoadingP(p?: Promise<void>): void;
127
- load(): Promise<void>;
128
- loadPre(): Promise<void>;
129
- } & {
130
- getAdapterMapEntry(adapterConf: {
131
- [x: string]: unknown;
132
- }, options: import("../data_adapters/BaseAdapter").BaseOptions): Promise<import("./assembly").RefNameMap>;
133
- getRefNameMapForAdapter(adapterConf: {
134
- [x: string]: unknown;
135
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
136
- [x: string]: string;
137
- }>;
138
- getReverseRefNameMapForAdapter(adapterConf: {
139
- [x: string]: unknown;
140
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
141
- [x: string]: string;
142
- }>;
143
- afterCreate(): void;
144
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
145
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
146
- }, {
147
- error: unknown;
148
- loadingP: Promise<void> | undefined;
149
- volatileRegions: import("./assembly").BasicRegion[] | undefined;
150
- refNameAliases: {
151
- [x: string]: string;
152
- } | undefined;
153
- cytobands: import("../util").Feature[] | undefined;
154
- } & {
155
- getConf(arg: string): any;
156
- readonly lowerCaseRefNameAliases: {
157
- [k: string]: string;
158
- } | undefined;
159
- } & {
160
- readonly initialized: boolean;
161
- readonly name: string;
162
- readonly regions: import("./assembly").BasicRegion[] | undefined;
163
- readonly aliases: string[];
164
- readonly displayName: string;
165
- hasName(name: string): boolean;
166
- readonly allAliases: string[];
167
- readonly allRefNames: string[] | undefined;
168
- readonly lowerCaseRefNames: string[] | undefined;
169
- readonly allRefNamesWithLowerCase: string[] | undefined;
170
- readonly rpcManager: RpcManager;
171
- readonly refNameColors: string[];
172
- } & {
173
- readonly refNames: string[] | undefined;
174
- } & {
175
- getCanonicalRefName(refName: string): string | undefined;
176
- getCanonicalRefName2(asmName: string): string;
177
- getRefNameColor(refName: string): string | undefined;
178
- isValidRefName(refName: string): boolean;
179
- } & {
180
- setLoaded({ regions, refNameAliases, cytobands, }: {
181
- regions: import("../util").Region[];
182
- refNameAliases: {
183
- [x: string]: string;
184
- };
185
- cytobands: import("../util").Feature[];
186
- }): void;
187
- setError(e: unknown): void;
188
- setRegions(regions: import("../util").Region[]): void;
189
- setRefNameAliases(aliases: {
190
- [x: string]: string;
191
- }): void;
192
- setCytobands(cytobands: import("../util").Feature[]): void;
193
- setLoadingP(p?: Promise<void>): void;
194
- load(): Promise<void>;
195
- loadPre(): Promise<void>;
196
- } & {
197
- getAdapterMapEntry(adapterConf: {
198
- [x: string]: unknown;
199
- }, options: import("../data_adapters/BaseAdapter").BaseOptions): Promise<import("./assembly").RefNameMap>;
200
- getRefNameMapForAdapter(adapterConf: {
201
- [x: string]: unknown;
202
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
203
- [x: string]: string;
204
- }>;
205
- getReverseRefNameMapForAdapter(adapterConf: {
206
- [x: string]: unknown;
207
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
208
- [x: string]: string;
209
- }>;
210
- afterCreate(): void;
211
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
212
- } & {
213
- getCanonicalAssemblyName(asmName: string): string | undefined;
214
- getCanonicalAssemblyName2(asmName: string): string;
215
- get(asmName: string): ({
216
- configuration: any;
217
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
218
- error: unknown;
219
- loadingP: Promise<void> | undefined;
220
- volatileRegions: import("./assembly").BasicRegion[] | undefined;
221
- refNameAliases: {
222
- [x: string]: string;
223
- } | undefined;
224
- cytobands: import("../util").Feature[] | undefined;
225
- } & {
226
- getConf(arg: string): any;
227
- readonly lowerCaseRefNameAliases: {
228
- [k: string]: string;
229
- } | undefined;
230
- } & {
231
- readonly initialized: boolean;
232
- readonly name: string;
233
- readonly regions: import("./assembly").BasicRegion[] | undefined;
234
- readonly aliases: string[];
235
- readonly displayName: string;
236
- hasName(name: string): boolean;
237
- readonly allAliases: string[];
238
- readonly allRefNames: string[] | undefined;
239
- readonly lowerCaseRefNames: string[] | undefined;
240
- readonly allRefNamesWithLowerCase: string[] | undefined;
241
- readonly rpcManager: RpcManager;
242
- readonly refNameColors: string[];
243
- } & {
244
- readonly refNames: string[] | undefined;
245
- } & {
246
- getCanonicalRefName(refName: string): string | undefined;
247
- getCanonicalRefName2(asmName: string): string;
248
- getRefNameColor(refName: string): string | undefined;
249
- isValidRefName(refName: string): boolean;
250
- } & {
251
- setLoaded({ regions, refNameAliases, cytobands, }: {
252
- regions: import("../util").Region[];
253
- refNameAliases: {
254
- [x: string]: string;
255
- };
256
- cytobands: import("../util").Feature[];
257
- }): void;
258
- setError(e: unknown): void;
259
- setRegions(regions: import("../util").Region[]): void;
260
- setRefNameAliases(aliases: {
261
- [x: string]: string;
262
- }): void;
263
- setCytobands(cytobands: import("../util").Feature[]): void;
264
- setLoadingP(p?: Promise<void>): void;
265
- load(): Promise<void>;
266
- loadPre(): Promise<void>;
267
- } & {
268
- getAdapterMapEntry(adapterConf: {
269
- [x: string]: unknown;
270
- }, options: import("../data_adapters/BaseAdapter").BaseOptions): Promise<import("./assembly").RefNameMap>;
271
- getRefNameMapForAdapter(adapterConf: {
272
- [x: string]: unknown;
273
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
274
- [x: string]: string;
275
- }>;
276
- getReverseRefNameMapForAdapter(adapterConf: {
277
- [x: string]: unknown;
278
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
279
- [x: string]: string;
280
- }>;
281
- afterCreate(): void;
282
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
283
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
284
- }, {
285
- error: unknown;
286
- loadingP: Promise<void> | undefined;
287
- volatileRegions: import("./assembly").BasicRegion[] | undefined;
288
- refNameAliases: {
289
- [x: string]: string;
290
- } | undefined;
291
- cytobands: import("../util").Feature[] | undefined;
292
- } & {
293
- getConf(arg: string): any;
294
- readonly lowerCaseRefNameAliases: {
295
- [k: string]: string;
296
- } | undefined;
297
- } & {
298
- readonly initialized: boolean;
299
- readonly name: string;
300
- readonly regions: import("./assembly").BasicRegion[] | undefined;
301
- readonly aliases: string[];
302
- readonly displayName: string;
303
- hasName(name: string): boolean;
304
- readonly allAliases: string[];
305
- readonly allRefNames: string[] | undefined;
306
- readonly lowerCaseRefNames: string[] | undefined;
307
- readonly allRefNamesWithLowerCase: string[] | undefined;
308
- readonly rpcManager: RpcManager;
309
- readonly refNameColors: string[];
310
- } & {
311
- readonly refNames: string[] | undefined;
312
- } & {
313
- getCanonicalRefName(refName: string): string | undefined;
314
- getCanonicalRefName2(asmName: string): string;
315
- getRefNameColor(refName: string): string | undefined;
316
- isValidRefName(refName: string): boolean;
317
- } & {
318
- setLoaded({ regions, refNameAliases, cytobands, }: {
319
- regions: import("../util").Region[];
320
- refNameAliases: {
321
- [x: string]: string;
322
- };
323
- cytobands: import("../util").Feature[];
324
- }): void;
325
- setError(e: unknown): void;
326
- setRegions(regions: import("../util").Region[]): void;
327
- setRefNameAliases(aliases: {
328
- [x: string]: string;
329
- }): void;
330
- setCytobands(cytobands: import("../util").Feature[]): void;
331
- setLoadingP(p?: Promise<void>): void;
332
- load(): Promise<void>;
333
- loadPre(): Promise<void>;
334
- } & {
335
- getAdapterMapEntry(adapterConf: {
336
- [x: string]: unknown;
337
- }, options: import("../data_adapters/BaseAdapter").BaseOptions): Promise<import("./assembly").RefNameMap>;
338
- getRefNameMapForAdapter(adapterConf: {
339
- [x: string]: unknown;
340
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
341
- [x: string]: string;
342
- }>;
343
- getReverseRefNameMapForAdapter(adapterConf: {
344
- [x: string]: unknown;
345
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
346
- [x: string]: string;
347
- }>;
348
- afterCreate(): void;
349
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
350
- readonly assemblyNamesList: any[];
351
- readonly assemblyList: AnyConfigurationModel[];
352
- readonly rpcManager: RpcManager;
353
- } & {
354
- waitForAssembly(assemblyName: string): Promise<({
355
- configuration: any;
356
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
357
- error: unknown;
358
- loadingP: Promise<void> | undefined;
359
- volatileRegions: import("./assembly").BasicRegion[] | undefined;
360
- refNameAliases: {
361
- [x: string]: string;
362
- } | undefined;
363
- cytobands: import("../util").Feature[] | undefined;
364
- } & {
365
- getConf(arg: string): any;
366
- readonly lowerCaseRefNameAliases: {
367
- [k: string]: string;
368
- } | undefined;
369
- } & {
370
- readonly initialized: boolean;
371
- readonly name: string;
372
- readonly regions: import("./assembly").BasicRegion[] | undefined;
373
- readonly aliases: string[];
374
- readonly displayName: string;
375
- hasName(name: string): boolean;
376
- readonly allAliases: string[];
377
- readonly allRefNames: string[] | undefined;
378
- readonly lowerCaseRefNames: string[] | undefined;
379
- readonly allRefNamesWithLowerCase: string[] | undefined;
380
- readonly rpcManager: RpcManager;
381
- readonly refNameColors: string[];
382
- } & {
383
- readonly refNames: string[] | undefined;
384
- } & {
385
- getCanonicalRefName(refName: string): string | undefined;
386
- getCanonicalRefName2(asmName: string): string;
387
- getRefNameColor(refName: string): string | undefined;
388
- isValidRefName(refName: string): boolean;
389
- } & {
390
- setLoaded({ regions, refNameAliases, cytobands, }: {
391
- regions: import("../util").Region[];
392
- refNameAliases: {
393
- [x: string]: string;
394
- };
395
- cytobands: import("../util").Feature[];
396
- }): void;
397
- setError(e: unknown): void;
398
- setRegions(regions: import("../util").Region[]): void;
399
- setRefNameAliases(aliases: {
400
- [x: string]: string;
401
- }): void;
402
- setCytobands(cytobands: import("../util").Feature[]): void;
403
- setLoadingP(p?: Promise<void>): void;
404
- load(): Promise<void>;
405
- loadPre(): Promise<void>;
406
- } & {
407
- getAdapterMapEntry(adapterConf: {
408
- [x: string]: unknown;
409
- }, options: import("../data_adapters/BaseAdapter").BaseOptions): Promise<import("./assembly").RefNameMap>;
410
- getRefNameMapForAdapter(adapterConf: {
411
- [x: string]: unknown;
412
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
413
- [x: string]: string;
414
- }>;
415
- getReverseRefNameMapForAdapter(adapterConf: {
416
- [x: string]: unknown;
417
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
418
- [x: string]: string;
419
- }>;
420
- afterCreate(): void;
421
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
422
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
423
- }, {
424
- error: unknown;
425
- loadingP: Promise<void> | undefined;
426
- volatileRegions: import("./assembly").BasicRegion[] | undefined;
427
- refNameAliases: {
428
- [x: string]: string;
429
- } | undefined;
430
- cytobands: import("../util").Feature[] | undefined;
431
- } & {
432
- getConf(arg: string): any;
433
- readonly lowerCaseRefNameAliases: {
434
- [k: string]: string;
435
- } | undefined;
436
- } & {
437
- readonly initialized: boolean;
438
- readonly name: string;
439
- readonly regions: import("./assembly").BasicRegion[] | undefined;
440
- readonly aliases: string[];
441
- readonly displayName: string;
442
- hasName(name: string): boolean;
443
- readonly allAliases: string[];
444
- readonly allRefNames: string[] | undefined;
445
- readonly lowerCaseRefNames: string[] | undefined;
446
- readonly allRefNamesWithLowerCase: string[] | undefined;
447
- readonly rpcManager: RpcManager;
448
- readonly refNameColors: string[];
449
- } & {
450
- readonly refNames: string[] | undefined;
451
- } & {
452
- getCanonicalRefName(refName: string): string | undefined;
453
- getCanonicalRefName2(asmName: string): string;
454
- getRefNameColor(refName: string): string | undefined;
455
- isValidRefName(refName: string): boolean;
456
- } & {
457
- setLoaded({ regions, refNameAliases, cytobands, }: {
458
- regions: import("../util").Region[];
459
- refNameAliases: {
460
- [x: string]: string;
461
- };
462
- cytobands: import("../util").Feature[];
463
- }): void;
464
- setError(e: unknown): void;
465
- setRegions(regions: import("../util").Region[]): void;
466
- setRefNameAliases(aliases: {
467
- [x: string]: string;
468
- }): void;
469
- setCytobands(cytobands: import("../util").Feature[]): void;
470
- setLoadingP(p?: Promise<void>): void;
471
- load(): Promise<void>;
472
- loadPre(): Promise<void>;
473
- } & {
474
- getAdapterMapEntry(adapterConf: {
475
- [x: string]: unknown;
476
- }, options: import("../data_adapters/BaseAdapter").BaseOptions): Promise<import("./assembly").RefNameMap>;
477
- getRefNameMapForAdapter(adapterConf: {
478
- [x: string]: unknown;
479
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
480
- [x: string]: string;
481
- }>;
482
- getReverseRefNameMapForAdapter(adapterConf: {
483
- [x: string]: unknown;
484
- }, opts: import("../data_adapters/BaseAdapter").BaseOptions): Promise<{
485
- [x: string]: string;
486
- }>;
487
- afterCreate(): void;
488
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
489
- getRefNameMapForAdapter(adapterConf: AdapterConf, assemblyName: string | undefined, opts: {
490
- stopToken?: string;
491
- sessionId: string;
492
- }): Promise<{
493
- [x: string]: string;
494
- } | undefined>;
495
- getReverseRefNameMapForAdapter(adapterConf: AdapterConf, assemblyName: string | undefined, opts: {
496
- stopToken?: string;
497
- sessionId: string;
498
- }): Promise<{
499
- [x: string]: string;
500
- } | undefined>;
501
- isValidRefName(refName: string, assemblyName: string): boolean;
502
- } & {
503
- afterAttach(): void;
504
- removeAssembly(asm: Assembly): void;
505
- addAssembly(configuration: any): void;
506
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
507
- export default assemblyManagerFactory;
@@ -1,138 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- const mobx_1 = require("mobx");
7
- const mobx_state_tree_1 = require("mobx-state-tree");
8
- const configuration_1 = require("../configuration");
9
- const util_1 = require("../util");
10
- const assembly_1 = __importDefault(require("./assembly"));
11
- function assemblyManagerFactory(conf, pm) {
12
- return mobx_state_tree_1.types
13
- .model({
14
- assemblies: mobx_state_tree_1.types.array((0, assembly_1.default)(conf, pm)),
15
- })
16
- .views(self => ({
17
- get assemblyNameMap() {
18
- const obj = {};
19
- for (const assembly of self.assemblies) {
20
- for (const name of assembly.allAliases) {
21
- obj[name] = assembly;
22
- }
23
- }
24
- return obj;
25
- },
26
- }))
27
- .views(self => ({
28
- getCanonicalAssemblyName(asmName) {
29
- var _a;
30
- return (_a = self.assemblyNameMap[asmName]) === null || _a === void 0 ? void 0 : _a.name;
31
- },
32
- getCanonicalAssemblyName2(asmName) {
33
- var _a;
34
- return ((_a = self.assemblyNameMap[asmName]) === null || _a === void 0 ? void 0 : _a.name) || asmName;
35
- },
36
- get(asmName) {
37
- if (asmName) {
38
- const assembly = self.assemblyNameMap[asmName];
39
- if (assembly) {
40
- return assembly;
41
- }
42
- else if (!this.assemblyNamesList.includes(asmName)) {
43
- pm.evaluateExtensionPoint('Core-handleUnrecognizedAssembly', undefined, {
44
- assemblyName: asmName,
45
- session: (0, mobx_state_tree_1.getParent)(self).session,
46
- });
47
- }
48
- }
49
- return undefined;
50
- },
51
- get assemblyNamesList() {
52
- return this.assemblyList.map(asm => asm.name);
53
- },
54
- get assemblyList() {
55
- const { jbrowse: { assemblies }, session: { sessionAssemblies = [], temporaryAssemblies = [] } = {}, } = (0, mobx_state_tree_1.getParent)(self);
56
- return [
57
- ...assemblies,
58
- ...sessionAssemblies,
59
- ...temporaryAssemblies,
60
- ];
61
- },
62
- get rpcManager() {
63
- return (0, mobx_state_tree_1.getParent)(self).rpcManager;
64
- },
65
- }))
66
- .views(self => ({
67
- async waitForAssembly(assemblyName) {
68
- if (!assemblyName) {
69
- throw new Error('no assembly name supplied to waitForAssembly');
70
- }
71
- let assembly = self.get(assemblyName);
72
- if (!assembly) {
73
- try {
74
- await (0, util_1.when)(() => Boolean(self.get(assemblyName)), {
75
- timeout: 10000,
76
- });
77
- assembly = self.get(assemblyName);
78
- }
79
- catch (e) {
80
- }
81
- }
82
- if (!assembly) {
83
- return undefined;
84
- }
85
- await assembly.load();
86
- await (0, util_1.when)(() => !!(assembly.regions && assembly.refNameAliases) || !!assembly.error);
87
- if (assembly.error) {
88
- throw assembly.error;
89
- }
90
- return assembly;
91
- },
92
- async getRefNameMapForAdapter(adapterConf, assemblyName, opts) {
93
- if (assemblyName) {
94
- const asm = await this.waitForAssembly(assemblyName);
95
- return asm === null || asm === void 0 ? void 0 : asm.getRefNameMapForAdapter(adapterConf, opts);
96
- }
97
- return {};
98
- },
99
- async getReverseRefNameMapForAdapter(adapterConf, assemblyName, opts) {
100
- if (assemblyName) {
101
- const asm = await this.waitForAssembly(assemblyName);
102
- return asm === null || asm === void 0 ? void 0 : asm.getReverseRefNameMapForAdapter(adapterConf, opts);
103
- }
104
- return {};
105
- },
106
- isValidRefName(refName, assemblyName) {
107
- const assembly = self.get(assemblyName);
108
- if (assembly) {
109
- return assembly.isValidRefName(refName);
110
- }
111
- throw new Error(`Failed to look up refName:${refName} on assemblyName:${assemblyName} (assembly does not exist)`);
112
- },
113
- }))
114
- .actions(self => ({
115
- afterAttach() {
116
- (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.reaction)(() => self.assemblyList, assemblyConfs => {
117
- for (const asm of self.assemblies) {
118
- if (!asm.configuration) {
119
- this.removeAssembly(asm);
120
- }
121
- }
122
- for (const conf of assemblyConfs) {
123
- const name = (0, configuration_1.readConfObject)(conf, 'name');
124
- if (!self.assemblies.some(a => a.name === name)) {
125
- this.addAssembly(conf);
126
- }
127
- }
128
- }, { fireImmediately: true, name: 'assemblyManagerAfterAttach' }));
129
- },
130
- removeAssembly(asm) {
131
- self.assemblies.remove(asm);
132
- },
133
- addAssembly(configuration) {
134
- self.assemblies.push({ configuration });
135
- },
136
- }));
137
- }
138
- exports.default = assemblyManagerFactory;
@@ -1,3 +0,0 @@
1
- export { default } from './assemblyManager';
2
- export { default as assemblyConfigSchemaFactory } from './assemblyConfigSchema';
3
- export type { BaseAssemblyConfigSchema } from './assemblyConfigSchema';
@@ -1,10 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.assemblyConfigSchemaFactory = exports.default = void 0;
7
- var assemblyManager_1 = require("./assemblyManager");
8
- Object.defineProperty(exports, "default", { enumerable: true, get: function () { return __importDefault(assemblyManager_1).default; } });
9
- var assemblyConfigSchema_1 = require("./assemblyConfigSchema");
10
- Object.defineProperty(exports, "assemblyConfigSchemaFactory", { enumerable: true, get: function () { return __importDefault(assemblyConfigSchema_1).default; } });