@jbrowse/core 3.7.0 → 4.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +32 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +13 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +43 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +8 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +17 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +20 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +57 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +11 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +42 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +14 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +14 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +22 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.js +1 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +26 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +41 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +7 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +44 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +7 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +34 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +26 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +3 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +29 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +11 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +40 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +105 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +5 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +64 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +48 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.d.ts +1 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +31 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +83 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +16 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +83 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +16 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +52 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +9 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +21 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +22 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +80 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +583 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +141 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +1116 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.js +1 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +13 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +73 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +42 -0
- package/esm/BaseFeatureWidget/configSchema.d.ts +2 -0
- package/esm/BaseFeatureWidget/configSchema.js +3 -0
- package/esm/BaseFeatureWidget/index.d.ts +2 -0
- package/esm/BaseFeatureWidget/index.js +2 -0
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +101 -0
- package/esm/BaseFeatureWidget/stateModelFactory.js +96 -0
- package/esm/BaseFeatureWidget/types.d.ts +22 -0
- package/esm/BaseFeatureWidget/types.js +1 -0
- package/esm/BaseFeatureWidget/util.d.ts +51 -0
- package/esm/BaseFeatureWidget/util.js +95 -0
- package/esm/CorePlugin.d.ts +6 -0
- package/esm/CorePlugin.js +24 -0
- package/esm/PhasedScheduler.js +25 -0
- package/esm/Plugin.d.ts +13 -0
- package/esm/Plugin.js +9 -0
- package/esm/PluginLoader.d.ts +64 -0
- package/esm/PluginLoader.js +164 -0
- package/esm/PluginManager.d.ts +125 -0
- package/esm/PluginManager.js +414 -0
- package/esm/ReExports/BaseFeatureDetails.js +9 -0
- package/esm/ReExports/DataGrid.js +1 -0
- package/esm/ReExports/MuiDataGridReExports.js +131 -0
- package/esm/ReExports/MuiReExports.d.ts +134 -0
- package/esm/ReExports/MuiReExports.js +115 -0
- package/esm/ReExports/index.d.ts +1 -0
- package/esm/ReExports/index.js +1 -0
- package/esm/ReExports/lazify.js +10 -0
- package/esm/ReExports/list.js +275 -0
- package/esm/ReExports/modules.js +149 -0
- package/esm/TextSearch/BaseResults.d.ts +46 -0
- package/esm/TextSearch/BaseResults.js +67 -0
- package/esm/TextSearch/TextSearchManager.d.ts +48 -0
- package/esm/TextSearch/TextSearchManager.js +77 -0
- package/esm/assemblyManager/assembly.d.ts +75 -0
- package/esm/assemblyManager/assembly.js +328 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +27 -0
- package/esm/assemblyManager/assemblyConfigSchema.js +51 -0
- package/esm/assemblyManager/assemblyManager.d.ts +528 -0
- package/esm/assemblyManager/assemblyManager.js +131 -0
- package/esm/assemblyManager/index.d.ts +3 -0
- package/esm/assemblyManager/index.js +2 -0
- package/esm/configuration/configurationSchema.d.ts +37 -0
- package/esm/configuration/configurationSchema.js +230 -0
- package/esm/configuration/configurationSlot.d.ts +33 -0
- package/esm/configuration/configurationSlot.js +239 -0
- package/esm/configuration/index.d.ts +3 -0
- package/esm/configuration/index.js +2 -0
- package/esm/configuration/types.d.ts +14 -0
- package/esm/configuration/types.js +1 -0
- package/esm/configuration/util.d.ts +10 -0
- package/esm/configuration/util.js +123 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +16 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +31 -0
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +24 -0
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +68 -0
- package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +18 -0
- package/esm/data_adapters/BaseAdapter/BaseOptions.js +1 -0
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +10 -0
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.js +1 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +11 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +12 -0
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +6 -0
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.js +1 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +6 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.js +1 -0
- package/esm/data_adapters/BaseAdapter/index.d.ts +13 -0
- package/esm/data_adapters/BaseAdapter/index.js +5 -0
- package/esm/data_adapters/BaseAdapter/stats.d.ts +10 -0
- package/esm/data_adapters/BaseAdapter/stats.js +48 -0
- package/esm/data_adapters/BaseAdapter/types.d.ts +23 -0
- package/esm/data_adapters/BaseAdapter/types.js +1 -0
- package/esm/data_adapters/BaseAdapter/util.d.ts +12 -0
- package/esm/data_adapters/BaseAdapter/util.js +15 -0
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +6 -0
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +28 -0
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +9 -0
- package/esm/data_adapters/CytobandAdapter/configSchema.js +24 -0
- package/esm/data_adapters/CytobandAdapter/index.d.ts +2 -0
- package/esm/data_adapters/CytobandAdapter/index.js +12 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +14 -0
- package/esm/data_adapters/dataAdapterCache.js +54 -0
- package/esm/data_adapters/util.js +4 -0
- package/esm/pluggableElementTypes/AdapterType.d.ts +25 -0
- package/esm/pluggableElementTypes/AdapterType.js +17 -0
- package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
- package/esm/pluggableElementTypes/AddTrackWorkflowType.js +10 -0
- package/esm/pluggableElementTypes/ConnectionType.d.ts +20 -0
- package/esm/pluggableElementTypes/ConnectionType.js +16 -0
- package/esm/pluggableElementTypes/DisplayType.d.ts +30 -0
- package/esm/pluggableElementTypes/DisplayType.js +20 -0
- package/esm/pluggableElementTypes/GlyphType.d.ts +43 -0
- package/esm/pluggableElementTypes/GlyphType.js +18 -0
- package/esm/pluggableElementTypes/InternetAccountType.d.ts +12 -0
- package/esm/pluggableElementTypes/InternetAccountType.js +10 -0
- package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +19 -0
- package/esm/pluggableElementTypes/RpcMethodType.js +88 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +11 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +28 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +18 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.js +15 -0
- package/esm/pluggableElementTypes/TrackType.d.ts +16 -0
- package/esm/pluggableElementTypes/TrackType.js +14 -0
- package/esm/pluggableElementTypes/ViewType.d.ts +29 -0
- package/esm/pluggableElementTypes/ViewType.js +18 -0
- package/esm/pluggableElementTypes/WidgetType.d.ts +27 -0
- package/esm/pluggableElementTypes/WidgetType.js +18 -0
- package/esm/pluggableElementTypes/index.d.ts +27 -0
- package/esm/pluggableElementTypes/index.js +14 -0
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +29 -0
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +35 -0
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +180 -0
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +104 -0
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +74 -0
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +203 -0
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +52 -0
- package/esm/pluggableElementTypes/models/BaseViewModel.js +42 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +86 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +151 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +16 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -0
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +27 -0
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +32 -0
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +87 -0
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +134 -0
- package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +11 -0
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +158 -0
- package/esm/pluggableElementTypes/models/index.d.ts +14 -0
- package/esm/pluggableElementTypes/models/index.js +8 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.d.ts +4 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +9 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +5 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +17 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +7 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +108 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +5 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +91 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +11 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.js +1 -0
- package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +52 -0
- package/esm/pluggableElementTypes/renderers/BoxRendererType.js +78 -0
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +4 -0
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +4 -0
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +58 -0
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +77 -0
- package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +31 -0
- package/esm/pluggableElementTypes/renderers/LayoutSession.js +37 -0
- package/esm/pluggableElementTypes/renderers/RendererType.d.ts +28 -0
- package/esm/pluggableElementTypes/renderers/RendererType.js +20 -0
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +57 -0
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +113 -0
- package/esm/pluggableElementTypes/renderers/index.d.ts +6 -0
- package/esm/pluggableElementTypes/renderers/index.js +6 -0
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +30 -0
- package/esm/pluggableElementTypes/renderers/util.d.ts +3 -0
- package/esm/pluggableElementTypes/renderers/util.js +14 -0
- package/esm/rpc/BaseRpcDriver.d.ts +40 -0
- package/esm/rpc/BaseRpcDriver.js +116 -0
- package/esm/rpc/MainThreadRpcDriver.d.ts +14 -0
- package/esm/rpc/MainThreadRpcDriver.js +33 -0
- package/esm/rpc/RpcManager.d.ts +35 -0
- package/esm/rpc/RpcManager.js +63 -0
- package/esm/rpc/WebWorkerRpcDriver.d.ts +31 -0
- package/esm/rpc/WebWorkerRpcDriver.js +77 -0
- package/esm/rpc/baseRpcConfig.d.ts +8 -0
- package/esm/rpc/baseRpcConfig.js +10 -0
- package/esm/rpc/configSchema.d.ts +9 -0
- package/esm/rpc/configSchema.js +22 -0
- package/esm/rpc/coreRpcMethods.d.ts +12 -0
- package/esm/rpc/coreRpcMethods.js +12 -0
- package/esm/rpc/mainThreadRpcConfig.d.ts +8 -0
- package/esm/rpc/mainThreadRpcConfig.js +8 -0
- package/esm/rpc/methods/CoreFreeResources.d.ts +6 -0
- package/esm/rpc/methods/CoreFreeResources.js +14 -0
- package/esm/rpc/methods/CoreGetExportData.d.ts +19 -0
- package/esm/rpc/methods/CoreGetExportData.js +18 -0
- package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +17 -0
- package/esm/rpc/methods/CoreGetFeatureDensityStats.js +25 -0
- package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +11 -0
- package/esm/rpc/methods/CoreGetFeatureDetails.js +24 -0
- package/esm/rpc/methods/CoreGetFeatures.d.ts +18 -0
- package/esm/rpc/methods/CoreGetFeatures.js +31 -0
- package/esm/rpc/methods/CoreGetFileInfo.d.ts +9 -0
- package/esm/rpc/methods/CoreGetFileInfo.js +15 -0
- package/esm/rpc/methods/CoreGetMetadata.d.ts +9 -0
- package/esm/rpc/methods/CoreGetMetadata.js +15 -0
- package/esm/rpc/methods/CoreGetRefNames.d.ts +10 -0
- package/esm/rpc/methods/CoreGetRefNames.js +19 -0
- package/esm/rpc/methods/CoreGetRegions.d.ts +8 -0
- package/esm/rpc/methods/CoreGetRegions.js +15 -0
- package/esm/rpc/methods/CoreGetSequence.d.ts +13 -0
- package/esm/rpc/methods/CoreGetSequence.js +17 -0
- package/esm/rpc/methods/CoreRender.d.ts +14 -0
- package/esm/rpc/methods/CoreRender.js +35 -0
- package/esm/rpc/methods/CoreSaveFeatureData.d.ts +16 -0
- package/esm/rpc/methods/CoreSaveFeatureData.js +32 -0
- package/esm/rpc/methods/util.d.ts +15 -0
- package/esm/rpc/methods/util.js +7 -0
- package/esm/rpc/webWorkerRpcConfig.d.ts +8 -0
- package/esm/rpc/webWorkerRpcConfig.js +8 -0
- package/esm/ui/AppLogo.d.ts +7 -0
- package/esm/ui/AppLogo.js +10 -0
- package/esm/ui/AssemblySelector.d.ts +13 -0
- package/esm/ui/AssemblySelector.js +39 -0
- package/esm/ui/BaseTooltip.js +42 -0
- package/esm/ui/CascadingMenu.d.ts +30 -0
- package/esm/ui/CascadingMenu.js +48 -0
- package/esm/ui/CascadingMenuButton.d.ts +26 -0
- package/esm/ui/CascadingMenuButton.js +24 -0
- package/esm/ui/CascadingMenuHelpDialog.d.ts +5 -0
- package/esm/ui/CascadingMenuHelpDialog.js +10 -0
- package/esm/ui/CascadingMenuHelpIconButton.d.ts +5 -0
- package/esm/ui/CascadingMenuHelpIconButton.js +15 -0
- package/esm/ui/ColorPicker.js +62 -0
- package/esm/ui/ConfirmDialog.js +13 -0
- package/esm/ui/DataGridFlexContainer.d.ts +5 -0
- package/esm/ui/DataGridFlexContainer.js +12 -0
- package/esm/ui/Dialog.d.ts +7 -0
- package/esm/ui/Dialog.js +45 -0
- package/esm/ui/DraggableDialog.js +27 -0
- package/esm/ui/DropDownMenu.d.ts +6 -0
- package/esm/ui/DropDownMenu.js +24 -0
- package/esm/ui/EditableTypography.js +60 -0
- package/esm/ui/ErrorBoundary.d.ts +17 -0
- package/esm/ui/ErrorBoundary.js +16 -0
- package/esm/ui/ErrorMessage.js +56 -0
- package/esm/ui/ErrorMessageStackTraceContents.d.ts +4 -0
- package/esm/ui/ErrorMessageStackTraceContents.js +25 -0
- package/esm/ui/ErrorMessageStackTraceDialog.js +108 -0
- package/esm/ui/ExternalLink.js +7 -0
- package/esm/ui/FactoryResetDialog.js +18 -0
- package/esm/ui/FatalErrorDialog.js +18 -0
- package/esm/ui/FileSelector/FileSelector.d.ts +11 -0
- package/esm/ui/FileSelector/FileSelector.js +52 -0
- package/esm/ui/FileSelector/LocalFileChooser.d.ts +6 -0
- package/esm/ui/FileSelector/LocalFileChooser.js +39 -0
- package/esm/ui/FileSelector/LocationInput.d.ts +9 -0
- package/esm/ui/FileSelector/LocationInput.js +15 -0
- package/esm/ui/FileSelector/SourceTypeSelector.d.ts +9 -0
- package/esm/ui/FileSelector/SourceTypeSelector.js +38 -0
- package/esm/ui/FileSelector/UrlChooser.d.ts +8 -0
- package/esm/ui/FileSelector/UrlChooser.js +17 -0
- package/esm/ui/FileSelector/index.d.ts +1 -0
- package/esm/ui/FileSelector/index.js +1 -0
- package/esm/ui/FileSelector/useInternetAccounts.d.ts +178 -0
- package/esm/ui/FileSelector/useInternetAccounts.js +18 -0
- package/esm/ui/HoverMenu.js +15 -0
- package/esm/ui/Icons.js +14 -0
- package/esm/ui/LoadingEllipses.js +31 -0
- package/esm/ui/Logo.js +42 -0
- package/esm/ui/Menu.d.ts +2 -0
- package/esm/ui/Menu.js +1 -0
- package/esm/ui/MenuButton.d.ts +1 -0
- package/esm/ui/MenuButton.js +1 -0
- package/esm/ui/MenuItems.d.ts +15 -0
- package/esm/ui/MenuItems.js +59 -0
- package/esm/ui/MenuTypes.d.ts +39 -0
- package/esm/ui/MenuTypes.js +1 -0
- package/esm/ui/PrerenderedCanvas.d.ts +10 -0
- package/esm/ui/PrerenderedCanvas.js +33 -0
- package/esm/ui/RedErrorMessageBox.js +16 -0
- package/esm/ui/ResizeHandle.js +67 -0
- package/esm/ui/ReturnToImportFormDialog.js +13 -0
- package/esm/ui/SanitizedHTML.js +61 -0
- package/esm/ui/Snackbar.d.ts +10 -0
- package/esm/ui/Snackbar.js +14 -0
- package/esm/ui/SnackbarContents.d.ts +5 -0
- package/esm/ui/SnackbarContents.js +11 -0
- package/esm/ui/SnackbarModel.d.ts +17 -0
- package/esm/ui/SnackbarModel.js +55 -0
- package/esm/ui/colors.js +67 -0
- package/esm/ui/index.d.ts +20 -0
- package/esm/ui/index.js +20 -0
- package/esm/ui/react-colorful.d.ts +3 -0
- package/esm/ui/react-colorful.js +416 -0
- package/esm/ui/theme.d.ts +58 -0
- package/esm/ui/theme.js +392 -0
- package/esm/ui/useEvent.js +10 -0
- package/esm/util/Base1DUtils.d.ts +38 -0
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- package/ui/AppLogo.js +0 -12
- package/ui/AssemblySelector.d.ts +0 -13
- package/ui/AssemblySelector.js +0 -46
- package/ui/BaseTooltip.js +0 -46
- package/ui/CascadingMenu.d.ts +0 -9
- package/ui/CascadingMenu.js +0 -114
- package/ui/CascadingMenuButton.d.ts +0 -11
- package/ui/CascadingMenuButton.js +0 -29
- package/ui/ColorPicker.js +0 -101
- package/ui/ConfirmDialog.js +0 -18
- package/ui/DataGridFlexContainer.d.ts +0 -3
- package/ui/DataGridFlexContainer.js +0 -15
- package/ui/Dialog.d.ts +0 -7
- package/ui/Dialog.js +0 -50
- package/ui/DraggableDialog.js +0 -32
- package/ui/DropDownMenu.d.ts +0 -8
- package/ui/DropDownMenu.js +0 -37
- package/ui/EditableTypography.js +0 -65
- package/ui/ErrorBoundary.d.ts +0 -17
- package/ui/ErrorBoundary.js +0 -19
- package/ui/ErrorMessage.js +0 -94
- package/ui/ErrorMessageStackTraceDialog.js +0 -149
- package/ui/ExternalLink.js +0 -13
- package/ui/FactoryResetDialog.js +0 -24
- package/ui/FatalErrorDialog.js +0 -24
- package/ui/FileSelector/FileSelector.d.ts +0 -11
- package/ui/FileSelector/FileSelector.js +0 -102
- package/ui/FileSelector/LocalFileChooser.d.ts +0 -6
- package/ui/FileSelector/LocalFileChooser.js +0 -42
- package/ui/FileSelector/UrlChooser.d.ts +0 -8
- package/ui/FileSelector/UrlChooser.js +0 -19
- package/ui/FileSelector/index.d.ts +0 -1
- package/ui/FileSelector/index.js +0 -8
- package/ui/HoverMenu.js +0 -50
- package/ui/Icons.js +0 -23
- package/ui/LoadingEllipses.js +0 -35
- package/ui/Logo.js +0 -46
- package/ui/Menu.d.ts +0 -54
- package/ui/Menu.js +0 -233
- package/ui/MenuButton.d.ts +0 -10
- package/ui/MenuButton.js +0 -28
- package/ui/PrerenderedCanvas.d.ts +0 -10
- package/ui/PrerenderedCanvas.js +0 -34
- package/ui/RedErrorMessageBox.js +0 -19
- package/ui/ResizeHandle.js +0 -72
- package/ui/ReturnToImportFormDialog.js +0 -18
- package/ui/SanitizedHTML.js +0 -67
- package/ui/Snackbar.d.ts +0 -10
- package/ui/Snackbar.js +0 -49
- package/ui/SnackbarContents.d.ts +0 -5
- package/ui/SnackbarContents.js +0 -16
- package/ui/SnackbarModel.d.ts +0 -17
- package/ui/SnackbarModel.js +0 -96
- package/ui/colors.js +0 -78
- package/ui/hooks.d.ts +0 -66
- package/ui/hooks.js +0 -185
- package/ui/index.d.ts +0 -19
- package/ui/index.js +0 -56
- package/ui/react-colorful.d.ts +0 -17
- package/ui/react-colorful.js +0 -466
- package/ui/theme.d.ts +0 -59
- package/ui/theme.js +0 -381
- package/ui/useEvent.js +0 -47
- package/util/Base1DUtils.d.ts +0 -38
- package/util/Base1DUtils.js +0 -198
- package/util/Base1DViewModel.d.ts +0 -61
- package/util/Base1DViewModel.js +0 -135
- package/util/QuickLRU.d.ts +0 -32
- package/util/QuickLRU.js +0 -237
- package/util/TimeTraveller.d.ts +0 -19
- package/util/TimeTraveller.js +0 -90
- package/util/aborting.js +0 -48
- package/util/analytics.js +0 -86
- package/util/blobToDataURL.js +0 -17
- package/util/blockTypes.d.ts +0 -58
- package/util/blockTypes.js +0 -110
- package/util/calculateDynamicBlocks.d.ts +0 -3
- package/util/calculateDynamicBlocks.js +0 -100
- package/util/calculateStaticBlocks.d.ts +0 -13
- package/util/calculateStaticBlocks.js +0 -102
- package/util/cluster.d.ts +0 -17
- package/util/cluster.js +0 -102
- package/util/color/cssColorsLevel4.js +0 -160
- package/util/color/index.d.ts +0 -5
- package/util/color/index.js +0 -48
- package/util/colord.d.ts +0 -1
- package/util/colord.js +0 -13
- package/util/compositeMap.js +0 -61
- package/util/convertCodingSequenceToPeptides.d.ts +0 -6
- package/util/convertCodingSequenceToPeptides.js +0 -12
- package/util/dedupe.js +0 -15
- package/util/fetchSeq.d.ts +0 -8
- package/util/fetchSeq.js +0 -27
- package/util/flatbush/index.d.ts +0 -25
- package/util/flatbush/index.js +0 -362
- package/util/flatqueue/index.js +0 -66
- package/util/formatFastaStrings.js +0 -12
- package/util/idMaker.js +0 -24
- package/util/index.d.ts +0 -274
- package/util/index.js +0 -1052
- package/util/io/RemoteFileWithRangeCache.js +0 -76
- package/util/io/index.d.ts +0 -7
- package/util/io/index.js +0 -103
- package/util/jexl.d.ts +0 -4
- package/util/jexl.js +0 -55
- package/util/jexlStrings.js +0 -23
- package/util/layouts/BaseLayout.d.ts +0 -30
- package/util/layouts/BaseLayout.js +0 -2
- package/util/layouts/GranularRectLayout.d.ts +0 -37
- package/util/layouts/GranularRectLayout.js +0 -343
- package/util/layouts/MultiLayout.d.ts +0 -12
- package/util/layouts/MultiLayout.js +0 -42
- package/util/layouts/PrecomputedLayout.d.ts +0 -30
- package/util/layouts/PrecomputedLayout.js +0 -75
- package/util/layouts/PrecomputedMultiLayout.d.ts +0 -4
- package/util/layouts/PrecomputedMultiLayout.js +0 -21
- package/util/layouts/SceneGraph.js +0 -115
- package/util/layouts/index.d.ts +0 -7
- package/util/layouts/index.js +0 -31
- package/util/makeAbortableReaction.d.ts +0 -2
- package/util/makeAbortableReaction.js +0 -50
- package/util/map-obj.d.ts +0 -3
- package/util/map-obj.js +0 -37
- package/util/mst-reflection.d.ts +0 -11
- package/util/mst-reflection.js +0 -62
- package/util/nanoid.d.ts +0 -5
- package/util/nanoid.js +0 -43
- package/util/nextTick.js +0 -6
- package/util/offscreenCanvasPonyfill.d.ts +0 -7
- package/util/offscreenCanvasPonyfill.js +0 -65
- package/util/offscreenCanvasUtils.d.ts +0 -28
- package/util/offscreenCanvasUtils.js +0 -99
- package/util/parseLineByLine.js +0 -25
- package/util/range.js +0 -26
- package/util/rxjs.d.ts +0 -3
- package/util/rxjs.js +0 -21
- package/util/simpleFeature.d.ts +0 -44
- package/util/simpleFeature.js +0 -82
- package/util/stats.d.ts +0 -21
- package/util/stats.js +0 -78
- package/util/stopToken.d.ts +0 -3
- package/util/stopToken.js +0 -29
- package/util/tracks.d.ts +0 -55
- package/util/tracks.js +0 -168
- package/util/types/index.d.ts +0 -254
- package/util/types/index.js +0 -172
- package/util/types/mst.d.ts +0 -107
- package/util/types/mst.js +0 -72
- package/util/types/util.d.ts +0 -6
- package/util/types/util.js +0 -2
- package/util/useFeatureSequence.d.ts +0 -19
- package/util/useFeatureSequence.js +0 -90
- package/util/useMeasure.js +0 -33
- package/util/when.js +0 -5
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/ArrayValue.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/BasicValue.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/DataGridDetails.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/FieldName.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/SimpleField.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/UriField.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/util.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/consts.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/util.d.ts +0 -0
- /package/{PhasedScheduler.d.ts → esm/PhasedScheduler.d.ts} +0 -0
- /package/{ReExports → esm/ReExports}/BaseFeatureDetails.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/DataGrid.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/MuiDataGridReExports.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/lazify.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/list.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/modules.d.ts +0 -0
- /package/{data_adapters → esm/data_adapters}/util.d.ts +0 -0
- /package/{pluggableElementTypes → esm/pluggableElementTypes}/PluggableElementBase.d.ts +0 -0
- /package/{pluggableElementTypes → esm/pluggableElementTypes}/renderers/util/serializableFilterChain.d.ts +0 -0
- /package/{ui → esm/ui}/BaseTooltip.d.ts +0 -0
- /package/{ui → esm/ui}/ColorPicker.d.ts +0 -0
- /package/{ui → esm/ui}/ConfirmDialog.d.ts +0 -0
- /package/{ui → esm/ui}/DraggableDialog.d.ts +0 -0
- /package/{ui → esm/ui}/EditableTypography.d.ts +0 -0
- /package/{ui → esm/ui}/ErrorMessage.d.ts +0 -0
- /package/{ui → esm/ui}/ErrorMessageStackTraceDialog.d.ts +0 -0
- /package/{ui → esm/ui}/ExternalLink.d.ts +0 -0
- /package/{ui → esm/ui}/FactoryResetDialog.d.ts +0 -0
- /package/{ui → esm/ui}/FatalErrorDialog.d.ts +0 -0
- /package/{ui → esm/ui}/HoverMenu.d.ts +0 -0
- /package/{ui → esm/ui}/Icons.d.ts +0 -0
- /package/{ui → esm/ui}/LoadingEllipses.d.ts +0 -0
- /package/{ui → esm/ui}/Logo.d.ts +0 -0
- /package/{ui → esm/ui}/RedErrorMessageBox.d.ts +0 -0
- /package/{ui → esm/ui}/ResizeHandle.d.ts +0 -0
- /package/{ui → esm/ui}/ReturnToImportFormDialog.d.ts +0 -0
- /package/{ui → esm/ui}/SanitizedHTML.d.ts +0 -0
- /package/{ui → esm/ui}/colors.d.ts +0 -0
- /package/{ui → esm/ui}/useEvent.d.ts +0 -0
- /package/{util → esm/util}/aborting.d.ts +0 -0
- /package/{util → esm/util}/analytics.d.ts +0 -0
- /package/{util → esm/util}/blobToDataURL.d.ts +0 -0
- /package/{util → esm/util}/color/cssColorsLevel4.d.ts +0 -0
- /package/{util → esm/util}/compositeMap.d.ts +0 -0
- /package/{util → esm/util}/dedupe.d.ts +0 -0
- /package/{util → esm/util}/flatqueue/index.d.ts +0 -0
- /package/{util → esm/util}/formatFastaStrings.d.ts +0 -0
- /package/{util → esm/util}/idMaker.d.ts +0 -0
- /package/{util → esm/util}/io/RemoteFileWithRangeCache.d.ts +0 -0
- /package/{util → esm/util}/jexlStrings.d.ts +0 -0
- /package/{util → esm/util}/layouts/SceneGraph.d.ts +0 -0
- /package/{util → esm/util}/nextTick.d.ts +0 -0
- /package/{util → esm/util}/parseLineByLine.d.ts +0 -0
- /package/{util → esm/util}/range.d.ts +0 -0
- /package/{util → esm/util}/useMeasure.d.ts +0 -0
- /package/{util → esm/util}/when.d.ts +0 -0
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description: string;
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defaultValue: {};
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|
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|
-
contextVariable: string[];
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|
-
};
|
|
75
|
-
hideUris: {
|
|
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|
-
type: string;
|
|
77
|
-
defaultValue: boolean;
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|
-
};
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|
79
|
-
}, import("../../configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
80
|
-
}, import("../../configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>;
|
|
81
|
-
export type BaseTrackConfigSchema = ReturnType<typeof createBaseTrackConfig>;
|
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|
-
export type BaseTrackConfig = Instance<BaseTrackConfigSchema>;
|
|
@@ -1,135 +0,0 @@
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|
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|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
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|
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exports.createBaseTrackConfig = createBaseTrackConfig;
|
|
4
|
-
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
5
|
-
const configuration_1 = require("../../configuration");
|
|
6
|
-
function createBaseTrackConfig(pluginManager) {
|
|
7
|
-
return (0, configuration_1.ConfigurationSchema)('BaseTrack', {
|
|
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|
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name: {
|
|
9
|
-
description: 'descriptive name of the track',
|
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|
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type: 'string',
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defaultValue: 'Track',
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},
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assemblyNames: {
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description: 'name of the assembly (or assemblies) track belongs to',
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type: 'stringArray',
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defaultValue: ['assemblyName'],
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},
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description: {
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description: 'a description of the track',
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type: 'string',
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defaultValue: '',
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},
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category: {
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description: 'the category and sub-categories of a track',
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type: 'stringArray',
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defaultValue: [],
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},
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metadata: {
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type: 'frozen',
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description: 'anything to add about this track',
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defaultValue: {},
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},
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adapter: pluginManager.pluggableConfigSchemaType('adapter'),
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|
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textSearching: (0, configuration_1.ConfigurationSchema)('textSearching', {
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|
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indexingAttributes: {
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type: 'stringArray',
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|
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description: 'list of which feature attributes to index for text searching',
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|
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defaultValue: ['Name', 'ID'],
|
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|
-
},
|
|
40
|
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indexingFeatureTypesToExclude: {
|
|
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|
-
type: 'stringArray',
|
|
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|
-
description: 'list of feature types to exclude in text search index',
|
|
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|
-
defaultValue: ['CDS', 'exon'],
|
|
44
|
-
},
|
|
45
|
-
textSearchAdapter: pluginManager.pluggableConfigSchemaType('text search adapter'),
|
|
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|
-
}),
|
|
47
|
-
displays: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('display')),
|
|
48
|
-
formatDetails: (0, configuration_1.ConfigurationSchema)('FormatDetails', {
|
|
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|
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feature: {
|
|
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|
-
type: 'frozen',
|
|
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|
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description: 'adds extra fields to the feature details',
|
|
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|
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defaultValue: {},
|
|
53
|
-
contextVariable: ['feature'],
|
|
54
|
-
},
|
|
55
|
-
subfeatures: {
|
|
56
|
-
type: 'frozen',
|
|
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|
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description: 'adds extra fields to the subfeatures of a feature',
|
|
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|
-
defaultValue: {},
|
|
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|
-
contextVariable: ['feature'],
|
|
60
|
-
},
|
|
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|
-
depth: {
|
|
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|
-
type: 'number',
|
|
63
|
-
defaultValue: 2,
|
|
64
|
-
description: 'depth of subfeatures to iterate the formatter on formatDetails.subfeatures (e.g. you may not want to format the exon/cds subfeatures, so limited to 2',
|
|
65
|
-
},
|
|
66
|
-
maxDepth: {
|
|
67
|
-
type: 'number',
|
|
68
|
-
defaultValue: 99999,
|
|
69
|
-
description: 'Maximum depth to render subfeatures',
|
|
70
|
-
},
|
|
71
|
-
}),
|
|
72
|
-
formatAbout: (0, configuration_1.ConfigurationSchema)('FormatAbout', {
|
|
73
|
-
config: {
|
|
74
|
-
type: 'frozen',
|
|
75
|
-
description: 'formats configuration object in about dialog',
|
|
76
|
-
defaultValue: {},
|
|
77
|
-
contextVariable: ['config'],
|
|
78
|
-
},
|
|
79
|
-
hideUris: {
|
|
80
|
-
type: 'boolean',
|
|
81
|
-
defaultValue: false,
|
|
82
|
-
},
|
|
83
|
-
}),
|
|
84
|
-
}, {
|
|
85
|
-
preProcessSnapshot: s2 => {
|
|
86
|
-
const snap = pluginManager.evaluateExtensionPoint('Core-preProcessTrackConfig', structuredClone(s2));
|
|
87
|
-
const { displays = [] } = snap;
|
|
88
|
-
if (snap.trackId !== 'placeholderId') {
|
|
89
|
-
try {
|
|
90
|
-
const configDisplayTypes = new Set(displays.map(d => d.type));
|
|
91
|
-
for (const d of pluginManager.getTrackType(snap.type)
|
|
92
|
-
.displayTypes) {
|
|
93
|
-
if (!configDisplayTypes.has(d.name)) {
|
|
94
|
-
displays.push({
|
|
95
|
-
displayId: `${snap.trackId}-${d.name}`,
|
|
96
|
-
type: d.name,
|
|
97
|
-
});
|
|
98
|
-
}
|
|
99
|
-
}
|
|
100
|
-
}
|
|
101
|
-
catch (e) {
|
|
102
|
-
throw new Error(`Unknown track type "${snap.type}" in ${JSON.stringify(snap)}`, {
|
|
103
|
-
cause: e,
|
|
104
|
-
});
|
|
105
|
-
}
|
|
106
|
-
}
|
|
107
|
-
return {
|
|
108
|
-
...snap,
|
|
109
|
-
displays: displays.map(d => {
|
|
110
|
-
var _a;
|
|
111
|
-
return ({
|
|
112
|
-
...d,
|
|
113
|
-
displayId: (_a = d.displayId) !== null && _a !== void 0 ? _a : `${snap.trackId}-${d.type}`,
|
|
114
|
-
});
|
|
115
|
-
}),
|
|
116
|
-
};
|
|
117
|
-
},
|
|
118
|
-
explicitIdentifier: 'trackId',
|
|
119
|
-
explicitlyTyped: true,
|
|
120
|
-
actions: (self) => ({
|
|
121
|
-
addDisplayConf(conf) {
|
|
122
|
-
const { type } = conf;
|
|
123
|
-
if (!type) {
|
|
124
|
-
throw new Error(`unknown display type ${type}`);
|
|
125
|
-
}
|
|
126
|
-
const display = self.displays.find((d) => (d === null || d === void 0 ? void 0 : d.displayId) === conf.displayId);
|
|
127
|
-
if (display) {
|
|
128
|
-
return display;
|
|
129
|
-
}
|
|
130
|
-
const length = self.displays.push(conf);
|
|
131
|
-
return self.displays[length - 1];
|
|
132
|
-
},
|
|
133
|
-
}),
|
|
134
|
-
});
|
|
135
|
-
}
|
|
@@ -1,13 +0,0 @@
|
|
|
1
|
-
export { default as baseConnectionConfig } from './baseConnectionConfig';
|
|
2
|
-
export { default as BaseConnectionModelFactory } from './BaseConnectionModelFactory';
|
|
3
|
-
export { default as BaseViewModel } from './BaseViewModel';
|
|
4
|
-
export type { IBaseViewModel } from './BaseViewModel';
|
|
5
|
-
export { BaseDisplay } from './BaseDisplayModel';
|
|
6
|
-
export type { BaseDisplayModel, BaseDisplayStateModel, } from './BaseDisplayModel';
|
|
7
|
-
export { InternetAccount } from './InternetAccountModel';
|
|
8
|
-
export type { BaseInternetAccountModel, BaseInternetAccountStateModel, } from './InternetAccountModel';
|
|
9
|
-
export { BaseInternetAccountConfig } from './baseInternetAccountConfig';
|
|
10
|
-
export { createBaseTrackModel } from './BaseTrackModel';
|
|
11
|
-
export type { BaseTrackModel, BaseTrackStateModel } from './BaseTrackModel';
|
|
12
|
-
export { createBaseTrackConfig } from './baseTrackConfig';
|
|
13
|
-
export type { BaseTrackConfig, BaseTrackConfigSchema as BaseTrackConfigModel, } from './baseTrackConfig';
|
|
@@ -1,22 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
-
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
-
};
|
|
5
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
exports.createBaseTrackConfig = exports.createBaseTrackModel = exports.BaseInternetAccountConfig = exports.InternetAccount = exports.BaseDisplay = exports.BaseViewModel = exports.BaseConnectionModelFactory = exports.baseConnectionConfig = void 0;
|
|
7
|
-
var baseConnectionConfig_1 = require("./baseConnectionConfig");
|
|
8
|
-
Object.defineProperty(exports, "baseConnectionConfig", { enumerable: true, get: function () { return __importDefault(baseConnectionConfig_1).default; } });
|
|
9
|
-
var BaseConnectionModelFactory_1 = require("./BaseConnectionModelFactory");
|
|
10
|
-
Object.defineProperty(exports, "BaseConnectionModelFactory", { enumerable: true, get: function () { return __importDefault(BaseConnectionModelFactory_1).default; } });
|
|
11
|
-
var BaseViewModel_1 = require("./BaseViewModel");
|
|
12
|
-
Object.defineProperty(exports, "BaseViewModel", { enumerable: true, get: function () { return __importDefault(BaseViewModel_1).default; } });
|
|
13
|
-
var BaseDisplayModel_1 = require("./BaseDisplayModel");
|
|
14
|
-
Object.defineProperty(exports, "BaseDisplay", { enumerable: true, get: function () { return BaseDisplayModel_1.BaseDisplay; } });
|
|
15
|
-
var InternetAccountModel_1 = require("./InternetAccountModel");
|
|
16
|
-
Object.defineProperty(exports, "InternetAccount", { enumerable: true, get: function () { return InternetAccountModel_1.InternetAccount; } });
|
|
17
|
-
var baseInternetAccountConfig_1 = require("./baseInternetAccountConfig");
|
|
18
|
-
Object.defineProperty(exports, "BaseInternetAccountConfig", { enumerable: true, get: function () { return baseInternetAccountConfig_1.BaseInternetAccountConfig; } });
|
|
19
|
-
var BaseTrackModel_1 = require("./BaseTrackModel");
|
|
20
|
-
Object.defineProperty(exports, "createBaseTrackModel", { enumerable: true, get: function () { return BaseTrackModel_1.createBaseTrackModel; } });
|
|
21
|
-
var baseTrackConfig_1 = require("./baseTrackConfig");
|
|
22
|
-
Object.defineProperty(exports, "createBaseTrackConfig", { enumerable: true, get: function () { return baseTrackConfig_1.createBaseTrackConfig; } });
|
|
@@ -1,60 +0,0 @@
|
|
|
1
|
-
import FeatureRendererType from './FeatureRendererType';
|
|
2
|
-
import { LayoutSession } from './LayoutSession';
|
|
3
|
-
import PrecomputedLayout from '../../util/layouts/PrecomputedLayout';
|
|
4
|
-
import type { RenderArgs as FeatureRenderArgs, RenderArgsDeserialized as FeatureRenderArgsDeserialized, RenderArgsSerialized as FeatureRenderArgsSerialized, RenderResults as FeatureRenderResults, ResultsDeserialized as FeatureResultsDeserialized, ResultsSerialized as FeatureResultsSerialized } from './FeatureRendererType';
|
|
5
|
-
import type { LayoutSessionProps } from './LayoutSession';
|
|
6
|
-
import type RpcManager from '../../rpc/RpcManager';
|
|
7
|
-
import type { Feature, Region } from '../../util';
|
|
8
|
-
import type { BaseLayout, SerializedLayout } from '../../util/layouts/BaseLayout';
|
|
9
|
-
import type GranularRectLayout from '../../util/layouts/GranularRectLayout';
|
|
10
|
-
import type MultiLayout from '../../util/layouts/MultiLayout';
|
|
11
|
-
export type MyMultiLayout = MultiLayout<GranularRectLayout<unknown>, unknown>;
|
|
12
|
-
export interface RenderArgs extends FeatureRenderArgs {
|
|
13
|
-
bpPerPx: number;
|
|
14
|
-
layoutId: string;
|
|
15
|
-
}
|
|
16
|
-
export interface RenderArgsSerialized extends FeatureRenderArgsSerialized {
|
|
17
|
-
bpPerPx: number;
|
|
18
|
-
}
|
|
19
|
-
export interface RenderArgsDeserialized extends FeatureRenderArgsDeserialized {
|
|
20
|
-
bpPerPx: number;
|
|
21
|
-
layoutId: string;
|
|
22
|
-
}
|
|
23
|
-
export interface RenderResults extends FeatureRenderResults {
|
|
24
|
-
layout: BaseLayout<Feature>;
|
|
25
|
-
}
|
|
26
|
-
export interface ResultsSerialized extends FeatureResultsSerialized {
|
|
27
|
-
maxHeightReached: boolean;
|
|
28
|
-
layout: SerializedLayout;
|
|
29
|
-
}
|
|
30
|
-
export interface ResultsDeserialized extends FeatureResultsDeserialized {
|
|
31
|
-
maxHeightReached: boolean;
|
|
32
|
-
layout: PrecomputedLayout<string>;
|
|
33
|
-
}
|
|
34
|
-
export default class BoxRendererType extends FeatureRendererType {
|
|
35
|
-
layoutSessions: Record<string, LayoutSession>;
|
|
36
|
-
createLayoutSession(props: LayoutSessionProps): LayoutSession;
|
|
37
|
-
getLayoutSession(props: {
|
|
38
|
-
sessionId: string;
|
|
39
|
-
layoutId: string;
|
|
40
|
-
}): LayoutSession | undefined;
|
|
41
|
-
getWorkerSession(props: LayoutSessionProps & {
|
|
42
|
-
sessionId: string;
|
|
43
|
-
layoutId: string;
|
|
44
|
-
}): LayoutSession;
|
|
45
|
-
getExpandedRegion(region: Region, renderArgs: RenderArgsDeserialized): {
|
|
46
|
-
start: number;
|
|
47
|
-
end: number;
|
|
48
|
-
refName: string;
|
|
49
|
-
reversed?: boolean | undefined;
|
|
50
|
-
assemblyName: string;
|
|
51
|
-
};
|
|
52
|
-
freeResources(args: Record<string, any>): void;
|
|
53
|
-
freeResourcesInWorker(args: Record<string, any>): void;
|
|
54
|
-
freeResourcesInClient(rpcManager: RpcManager, args: RenderArgs): Promise<void>;
|
|
55
|
-
deserializeLayoutInClient(json: SerializedLayout): PrecomputedLayout<unknown>;
|
|
56
|
-
deserializeResultsInClient(result: ResultsSerialized, args: RenderArgs): ResultsDeserialized;
|
|
57
|
-
createLayoutInWorker(args: RenderArgsDeserialized): GranularRectLayout<unknown>;
|
|
58
|
-
serializeResultsInWorker(results: RenderResults, args: RenderArgsDeserialized): ResultsSerialized;
|
|
59
|
-
render(props: RenderArgsDeserialized): Promise<RenderResults>;
|
|
60
|
-
}
|
|
@@ -1,102 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
-
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
-
};
|
|
5
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
const FeatureRendererType_1 = __importDefault(require("./FeatureRendererType"));
|
|
7
|
-
const LayoutSession_1 = require("./LayoutSession");
|
|
8
|
-
const configuration_1 = require("../../configuration");
|
|
9
|
-
const util_1 = require("../../util");
|
|
10
|
-
const PrecomputedLayout_1 = __importDefault(require("../../util/layouts/PrecomputedLayout"));
|
|
11
|
-
class BoxRendererType extends FeatureRendererType_1.default {
|
|
12
|
-
constructor() {
|
|
13
|
-
super(...arguments);
|
|
14
|
-
this.layoutSessions = {};
|
|
15
|
-
}
|
|
16
|
-
createLayoutSession(props) {
|
|
17
|
-
return new LayoutSession_1.LayoutSession(props);
|
|
18
|
-
}
|
|
19
|
-
getLayoutSession(props) {
|
|
20
|
-
return this.layoutSessions[(0, util_1.getLayoutId)(props)];
|
|
21
|
-
}
|
|
22
|
-
getWorkerSession(props) {
|
|
23
|
-
const key = (0, util_1.getLayoutId)(props);
|
|
24
|
-
if (!this.layoutSessions[key]) {
|
|
25
|
-
this.layoutSessions[key] = this.createLayoutSession(props);
|
|
26
|
-
}
|
|
27
|
-
return this.layoutSessions[key].update(props);
|
|
28
|
-
}
|
|
29
|
-
getExpandedRegion(region, renderArgs) {
|
|
30
|
-
const { bpPerPx, config } = renderArgs;
|
|
31
|
-
const maxFeatureGlyphExpansion = (0, configuration_1.readConfObject)(config, 'maxFeatureGlyphExpansion') || 0;
|
|
32
|
-
const bpExpansion = Math.round(maxFeatureGlyphExpansion * bpPerPx);
|
|
33
|
-
return {
|
|
34
|
-
...region,
|
|
35
|
-
start: Math.floor(Math.max(region.start - bpExpansion, 0)),
|
|
36
|
-
end: Math.ceil(region.end + bpExpansion),
|
|
37
|
-
};
|
|
38
|
-
}
|
|
39
|
-
freeResources(args) {
|
|
40
|
-
this.freeResourcesInWorker(args);
|
|
41
|
-
}
|
|
42
|
-
freeResourcesInWorker(args) {
|
|
43
|
-
const { regions } = args;
|
|
44
|
-
const key = (0, util_1.getLayoutId)(args);
|
|
45
|
-
const session = this.layoutSessions[key];
|
|
46
|
-
if (session) {
|
|
47
|
-
const region = regions[0];
|
|
48
|
-
session.layout.discardRange(region.refName, region.start, region.end);
|
|
49
|
-
}
|
|
50
|
-
}
|
|
51
|
-
async freeResourcesInClient(rpcManager, args) {
|
|
52
|
-
const { regions } = args;
|
|
53
|
-
const key = (0, util_1.getLayoutId)(args);
|
|
54
|
-
const session = this.layoutSessions[key];
|
|
55
|
-
if (session) {
|
|
56
|
-
const region = regions[0];
|
|
57
|
-
session.layout.discardRange(region.refName, region.start, region.end);
|
|
58
|
-
}
|
|
59
|
-
return super.freeResourcesInClient(rpcManager, args);
|
|
60
|
-
}
|
|
61
|
-
deserializeLayoutInClient(json) {
|
|
62
|
-
return new PrecomputedLayout_1.default(json);
|
|
63
|
-
}
|
|
64
|
-
deserializeResultsInClient(result, args) {
|
|
65
|
-
const layout = this.deserializeLayoutInClient(result.layout);
|
|
66
|
-
return super.deserializeResultsInClient({
|
|
67
|
-
...result,
|
|
68
|
-
layout,
|
|
69
|
-
}, args);
|
|
70
|
-
}
|
|
71
|
-
createLayoutInWorker(args) {
|
|
72
|
-
const { regions } = args;
|
|
73
|
-
const { layout } = this.getWorkerSession(args);
|
|
74
|
-
return layout.getSublayout(regions[0].refName);
|
|
75
|
-
}
|
|
76
|
-
serializeResultsInWorker(results, args) {
|
|
77
|
-
const { features, ...rest } = super.serializeResultsInWorker(results, args);
|
|
78
|
-
const region = args.regions[0];
|
|
79
|
-
const layout = results.layout.serializeRegion(this.getExpandedRegion(region, args));
|
|
80
|
-
return {
|
|
81
|
-
...rest,
|
|
82
|
-
layout,
|
|
83
|
-
maxHeightReached: layout.maxHeightReached,
|
|
84
|
-
features: layout.rectangles !== undefined
|
|
85
|
-
? features.filter(f => !!layout.rectangles[f.uniqueId])
|
|
86
|
-
: features,
|
|
87
|
-
};
|
|
88
|
-
}
|
|
89
|
-
async render(props) {
|
|
90
|
-
const layout = props.layout ||
|
|
91
|
-
this.createLayoutInWorker(props);
|
|
92
|
-
const result = await super.render({
|
|
93
|
-
...props,
|
|
94
|
-
layout,
|
|
95
|
-
});
|
|
96
|
-
return {
|
|
97
|
-
...result,
|
|
98
|
-
layout,
|
|
99
|
-
};
|
|
100
|
-
}
|
|
101
|
-
}
|
|
102
|
-
exports.default = BoxRendererType;
|
|
@@ -1,26 +0,0 @@
|
|
|
1
|
-
import FeatureRenderer from './FeatureRendererType';
|
|
2
|
-
import { SimpleFeature } from '../../util';
|
|
3
|
-
import type { SimpleFeatureSerialized } from '../../util';
|
|
4
|
-
import type { ThemeOptions } from '@mui/material';
|
|
5
|
-
export default class CircularChordRendererType extends FeatureRenderer {
|
|
6
|
-
supportsSVG: boolean;
|
|
7
|
-
deserializeResultsInClient(res: {
|
|
8
|
-
features: SimpleFeatureSerialized[];
|
|
9
|
-
html: string;
|
|
10
|
-
}, args: {
|
|
11
|
-
displayModel?: any;
|
|
12
|
-
theme: ThemeOptions;
|
|
13
|
-
exportSVG?: {
|
|
14
|
-
rasterizeLayers?: boolean;
|
|
15
|
-
};
|
|
16
|
-
}): {
|
|
17
|
-
features: Map<string, SimpleFeature>;
|
|
18
|
-
blockKey: string;
|
|
19
|
-
html: string;
|
|
20
|
-
} | {
|
|
21
|
-
features: Map<string, SimpleFeature>;
|
|
22
|
-
blockKey: string;
|
|
23
|
-
reactElement: import("react/jsx-runtime").JSX.Element;
|
|
24
|
-
html: string;
|
|
25
|
-
};
|
|
26
|
-
}
|
|
@@ -1,34 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
-
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
-
};
|
|
5
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
7
|
-
const FeatureRendererType_1 = __importDefault(require("./FeatureRendererType"));
|
|
8
|
-
const RpcRenderedSvgGroup_1 = __importDefault(require("./RpcRenderedSvgGroup"));
|
|
9
|
-
const util_1 = require("../../util");
|
|
10
|
-
class CircularChordRendererType extends FeatureRendererType_1.default {
|
|
11
|
-
constructor() {
|
|
12
|
-
super(...arguments);
|
|
13
|
-
this.supportsSVG = true;
|
|
14
|
-
}
|
|
15
|
-
deserializeResultsInClient(res, args) {
|
|
16
|
-
const deserializedFeatures = new Map(res.features.map(f => util_1.SimpleFeature.fromJSON(f)).map(f => [f.id(), f]));
|
|
17
|
-
return args.exportSVG
|
|
18
|
-
? {
|
|
19
|
-
...res,
|
|
20
|
-
features: deserializedFeatures,
|
|
21
|
-
blockKey: 'circularChord',
|
|
22
|
-
html: this.supportsSVG
|
|
23
|
-
? res.html
|
|
24
|
-
: '<text y="12" fill="black">SVG export not supported for this track</text>',
|
|
25
|
-
}
|
|
26
|
-
: {
|
|
27
|
-
...res,
|
|
28
|
-
features: deserializedFeatures,
|
|
29
|
-
blockKey: 'circularChord',
|
|
30
|
-
reactElement: ((0, jsx_runtime_1.jsx)(RpcRenderedSvgGroup_1.default, { ...args, ...res, features: deserializedFeatures, RenderingComponent: this.ReactComponent })),
|
|
31
|
-
};
|
|
32
|
-
}
|
|
33
|
-
}
|
|
34
|
-
exports.default = CircularChordRendererType;
|
|
@@ -1,38 +0,0 @@
|
|
|
1
|
-
import ServerSideRenderer from './ServerSideRendererType';
|
|
2
|
-
import type { RenderArgs as ServerSideRenderArgs, RenderArgsDeserialized as ServerSideRenderArgsDeserialized, RenderArgsSerialized as ServerSideRenderArgsSerialized, ResultsDeserialized as ServerSideResultsDeserialized, ResultsSerialized as ServerSideResultsSerialized } from './ServerSideRendererType';
|
|
3
|
-
import type { AnyConfigurationModel } from '../../configuration';
|
|
4
|
-
import type RpcManager from '../../rpc/RpcManager';
|
|
5
|
-
import type { Feature } from '../../util/simpleFeature';
|
|
6
|
-
import type { Region } from '../../util/types';
|
|
7
|
-
export interface RenderArgs extends ServerSideRenderArgs {
|
|
8
|
-
blockKey: string;
|
|
9
|
-
}
|
|
10
|
-
export interface RenderArgsSerialized extends ServerSideRenderArgsSerialized {
|
|
11
|
-
blockKey: string;
|
|
12
|
-
}
|
|
13
|
-
export interface RenderArgsDeserialized extends ServerSideRenderArgsDeserialized {
|
|
14
|
-
blockKey: string;
|
|
15
|
-
}
|
|
16
|
-
export type ResultsSerialized = ServerSideResultsSerialized;
|
|
17
|
-
export interface ResultsDeserialized extends ServerSideResultsDeserialized {
|
|
18
|
-
blockKey: string;
|
|
19
|
-
}
|
|
20
|
-
export interface ResultsSerializedSvgExport extends ResultsSerialized {
|
|
21
|
-
canvasRecordedData: unknown;
|
|
22
|
-
width: number;
|
|
23
|
-
height: number;
|
|
24
|
-
reactElement: unknown;
|
|
25
|
-
}
|
|
26
|
-
export default class ComparativeServerSideRenderer extends ServerSideRenderer {
|
|
27
|
-
renameRegionsIfNeeded(args: RenderArgs): Promise<RenderArgs>;
|
|
28
|
-
serializeArgsInClient(args: RenderArgs): ServerSideRenderArgsSerialized;
|
|
29
|
-
deserializeResultsInClient(result: ResultsSerialized, args: RenderArgs): ResultsDeserialized;
|
|
30
|
-
renderInClient(rpcManager: RpcManager, args: RenderArgs): Promise<ServerSideResultsSerialized>;
|
|
31
|
-
featurePassesFilters(renderArgs: RenderArgsDeserialized, feature: Feature): boolean;
|
|
32
|
-
getFeatures(renderArgs: {
|
|
33
|
-
regions: Region[];
|
|
34
|
-
sessionId: string;
|
|
35
|
-
adapterConfig: AnyConfigurationModel;
|
|
36
|
-
}): Promise<Feature[]>;
|
|
37
|
-
}
|
|
38
|
-
export { type RenderResults } from './ServerSideRendererType';
|