@jbrowse/core 3.6.5 → 4.0.0

package/util/index.js

@@ -1,1052 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __exportStar = (this && this.__exportStar) || function(m, exports) {
-    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.makeAbortableReaction = exports.blobToDataURL = exports.isFeature = exports.SimpleFeature = exports.defaultCodonTable = exports.defaultStops = exports.defaultStarts = exports.rIC = exports.complementTable = exports.isElectron = void 0;
-exports.useDebounce = useDebounce;
-exports.useWidthSetter = useWidthSetter;
-exports.useDebouncedCallback = useDebouncedCallback;
-exports.findParentThat = findParentThat;
-exports.springAnimate = springAnimate;
-exports.findParentThatIs = findParentThatIs;
-exports.getSession = getSession;
-exports.getContainingView = getContainingView;
-exports.getContainingTrack = getContainingTrack;
-exports.getContainingDisplay = getContainingDisplay;
-exports.assembleLocString = assembleLocString;
-exports.assembleLocStringFast = assembleLocStringFast;
-exports.parseLocStringOneBased = parseLocStringOneBased;
-exports.parseLocString = parseLocString;
-exports.compareLocs = compareLocs;
-exports.compareLocStrings = compareLocStrings;
-exports.clamp = clamp;
-exports.bpToPx = bpToPx;
-exports.radToDeg = radToDeg;
-exports.degToRad = degToRad;
-exports.polarToCartesian = polarToCartesian;
-exports.cartesianToPolar = cartesianToPolar;
-exports.featureSpanPx = featureSpanPx;
-exports.bpSpanPx = bpSpanPx;
-exports.iterMap = iterMap;
-exports.findLastIndex = findLastIndex;
-exports.findLast = findLast;
-exports.renameRegionIfNeeded = renameRegionIfNeeded;
-exports.renameRegionsIfNeeded = renameRegionsIfNeeded;
-exports.minmax = minmax;
-exports.shorten = shorten;
-exports.shorten2 = shorten2;
-exports.stringify = stringify;
-exports.revcom = revcom;
-exports.reverse = reverse;
-exports.complement = complement;
-exports.measureText = measureText;
-exports.getFrame = getFrame;
-exports.generateCodonTable = generateCodonTable;
-exports.updateStatus = updateStatus;
-exports.updateStatus2 = updateStatus2;
-exports.hashCode = hashCode;
-exports.objectHash = objectHash;
-exports.bytesForRegions = bytesForRegions;
-exports.isSupportedIndexingAdapter = isSupportedIndexingAdapter;
-exports.getBpDisplayStr = getBpDisplayStr;
-exports.getProgressDisplayStr = getProgressDisplayStr;
-exports.toLocale = toLocale;
-exports.getTickDisplayStr = getTickDisplayStr;
-exports.getViewParams = getViewParams;
-exports.getLayoutId = getLayoutId;
-exports.useLocalStorage = useLocalStorage;
-exports.getUriLink = getUriLink;
-exports.getStr = getStr;
-exports.coarseStripHTML = coarseStripHTML;
-exports.linkify = linkify;
-exports.measureGridWidth = measureGridWidth;
-exports.getEnv = getEnv;
-exports.localStorageGetItem = localStorageGetItem;
-exports.localStorageSetItem = localStorageSetItem;
-exports.max = max;
-exports.min = min;
-exports.sum = sum;
-exports.avg = avg;
-exports.groupBy = groupBy;
-exports.notEmpty = notEmpty;
-exports.mergeIntervals = mergeIntervals;
-exports.gatherOverlaps = gatherOverlaps;
-exports.stripAlpha = stripAlpha;
-exports.getStrokeProps = getStrokeProps;
-exports.getFillProps = getFillProps;
-exports.renderToStaticMarkup = renderToStaticMarkup;
-exports.isGzip = isGzip;
-exports.fetchAndMaybeUnzip = fetchAndMaybeUnzip;
-exports.fetchAndMaybeUnzipText = fetchAndMaybeUnzipText;
-exports.isObject = isObject;
-exports.localStorageGetNumber = localStorageGetNumber;
-exports.localStorageGetBoolean = localStorageGetBoolean;
-exports.localStorageSetBoolean = localStorageSetBoolean;
-exports.forEachWithStopTokenCheck = forEachWithStopTokenCheck;
-exports.testAdapter = testAdapter;
-const react_1 = require("react");
-const bgzf_filehandle_1 = require("@gmod/bgzf-filehandle");
-const useMeasure_1 = __importDefault(require("@jbrowse/core/util/useMeasure"));
-const mobx_state_tree_1 = require("mobx-state-tree");
-const react_dom_1 = require("react-dom");
-const client_1 = require("react-dom/client");
-const colord_1 = require("./colord");
-const stopToken_1 = require("./stopToken");
-const types_1 = require("./types");
-__exportStar(require("./types"), exports);
-__exportStar(require("./when"), exports);
-__exportStar(require("./range"), exports);
-__exportStar(require("./dedupe"), exports);
-__exportStar(require("./offscreenCanvasPonyfill"), exports);
-__exportStar(require("./offscreenCanvasUtils"), exports);
-function useDebounce(value, delay) {
-    const [debouncedValue, setDebouncedValue] = (0, react_1.useState)(value);
-    (0, react_1.useEffect)(() => {
-        const handle = setTimeout(() => {
-            setDebouncedValue(value);
-        }, delay);
-        return () => {
-            clearTimeout(handle);
-        };
-    }, [value, delay]);
-    return debouncedValue;
-}
-function useWidthSetter(view, padding) {
-    const [ref, { width }] = (0, useMeasure_1.default)();
-    (0, react_1.useEffect)(() => {
-        let token;
-        if (width && (0, mobx_state_tree_1.isAlive)(view)) {
-            token = requestAnimationFrame(() => {
-                view.setWidth(width);
-            });
-        }
-        return () => {
-            if (token) {
-                cancelAnimationFrame(token);
-            }
-        };
-    }, [padding, view, width]);
-    return ref;
-}
-function useDebouncedCallback(callback, wait = 400) {
-    const argsRef = (0, react_1.useRef)(null);
-    const timeout = (0, react_1.useRef)(null);
-    (0, react_1.useEffect)(() => {
-        if (timeout.current) {
-            clearTimeout(timeout.current);
-        }
-    }, []);
-    return function debouncedCallback(...args) {
-        argsRef.current = args;
-        if (timeout.current) {
-            clearTimeout(timeout.current);
-        }
-        timeout.current = setTimeout(() => {
-            if (argsRef.current) {
-                callback(...argsRef.current);
-            }
-        }, wait);
-    };
-}
-function findParentThat(node, predicate) {
-    if (!(0, mobx_state_tree_1.hasParent)(node)) {
-        throw new Error('node does not have parent');
-    }
-    let currentNode = (0, mobx_state_tree_1.getParent)(node);
-    while (currentNode && (0, mobx_state_tree_1.isAlive)(currentNode)) {
-        if (predicate(currentNode)) {
-            return currentNode;
-        }
-        if ((0, mobx_state_tree_1.hasParent)(currentNode)) {
-            currentNode = (0, mobx_state_tree_1.getParent)(currentNode);
-        }
-        else {
-            break;
-        }
-    }
-    throw new Error('no matching node found');
-}
-function springAnimate(fromValue, toValue, setValue, onFinish = () => { }, precision = 0, tension = 400, friction = 20, clamp = true) {
-    const mass = 1;
-    if (!precision) {
-        precision = Math.abs(toValue - fromValue) / 1000;
-    }
-    let animationFrameId;
-    function update(animation) {
-        const time = Date.now();
-        let position = animation.lastPosition;
-        let lastTime = animation.lastTime || time;
-        let velocity = animation.lastVelocity || 0;
-        if (time > lastTime + 64) {
-            lastTime = time;
-        }
-        const numSteps = Math.floor(time - lastTime);
-        for (let i = 0; i < numSteps; ++i) {
-            const force = -tension * (position - toValue);
-            const damping = -friction * velocity;
-            const acceleration = (force + damping) / mass;
-            velocity += (acceleration * 1) / 1000;
-            position += (velocity * 1) / 1000;
-        }
-        const isVelocity = Math.abs(velocity) <= precision;
-        const isDisplacement = tension !== 0 ? Math.abs(toValue - position) <= precision : true;
-        const isOvershooting = clamp && tension !== 0
-            ? fromValue < toValue
-                ? position > toValue
-                : position < toValue
-            : false;
-        const endOfAnimation = isOvershooting || (isVelocity && isDisplacement);
-        if (endOfAnimation) {
-            setValue(toValue);
-            onFinish();
-        }
-        else {
-            setValue(position);
-            animationFrameId = requestAnimationFrame(() => {
-                update({
-                    lastPosition: position,
-                    lastTime: time,
-                    lastVelocity: velocity,
-                });
-            });
-        }
-    }
-    return [
-        () => {
-            update({ lastPosition: fromValue });
-        },
-        () => {
-            cancelAnimationFrame(animationFrameId);
-        },
-    ];
-}
-function findParentThatIs(node, predicate) {
-    return findParentThat(node, predicate);
-}
-function getSession(node) {
-    try {
-        return findParentThatIs(node, types_1.isSessionModel);
-    }
-    catch (e) {
-        throw new Error('no session model found!');
-    }
-}
-function getContainingView(node) {
-    try {
-        return findParentThatIs(node, types_1.isViewModel);
-    }
-    catch (e) {
-        throw new Error('no containing view found');
-    }
-}
-function getContainingTrack(node) {
-    try {
-        return findParentThatIs(node, types_1.isTrackModel);
-    }
-    catch (e) {
-        throw new Error('no containing track found');
-    }
-}
-function getContainingDisplay(node) {
-    try {
-        return findParentThatIs(node, types_1.isDisplayModel);
-    }
-    catch (e) {
-        throw new Error('no containing display found');
-    }
-}
-function assembleLocString(region) {
-    return assembleLocStringFast(region, toLocale);
-}
-function assembleLocStringFast(region, cb = (n) => n) {
-    const { assemblyName, refName, start, end, reversed } = region;
-    const assemblyNameString = assemblyName ? `{${assemblyName}}` : '';
-    let startString;
-    if (start !== undefined) {
-        startString = `:${cb(start + 1)}`;
-    }
-    else if (end !== undefined) {
-        startString = ':1';
-    }
-    else {
-        startString = '';
-    }
-    let endString;
-    if (end !== undefined) {
-        endString = start !== undefined && start + 1 === end ? '' : `..${cb(end)}`;
-    }
-    else {
-        endString = start !== undefined ? '..' : '';
-    }
-    let rev = '';
-    if (reversed) {
-        rev = '[rev]';
-    }
-    return `${assemblyNameString}${refName}${startString}${endString}${rev}`;
-}
-function parseLocStringOneBased(locString, isValidRefName) {
-    if (!locString) {
-        throw new Error('no location string provided, could not parse');
-    }
-    let reversed = false;
-    if (locString.endsWith('[rev]')) {
-        reversed = true;
-        locString = locString.replace(/\[rev]$/, '');
-    }
-    locString = locString.replace(/\s/, '');
-    const assemblyMatch = /({(.+)})?(.+)/.exec(locString);
-    if (!assemblyMatch) {
-        throw new Error(`invalid location string: "${locString}"`);
-    }
-    const [, , assemblyName2, location2] = assemblyMatch;
-    const assemblyName = assemblyName2;
-    const location = location2;
-    if (!assemblyName && location.startsWith('{}')) {
-        throw new Error(`no assembly name was provided in location "${location}"`);
-    }
-    const lastColonIdx = location.lastIndexOf(':');
-    if (lastColonIdx === -1) {
-        if (isValidRefName(location, assemblyName)) {
-            return {
-                assemblyName,
-                refName: location,
-                reversed,
-            };
-        }
-        throw new Error(`Unknown reference sequence "${location}"`);
-    }
-    const prefix = location.slice(0, lastColonIdx);
-    const suffix = location.slice(lastColonIdx + 1);
-    if (isValidRefName(prefix, assemblyName) &&
-        isValidRefName(location, assemblyName)) {
-        throw new Error(`ambiguous location string: "${locString}"`);
-    }
-    else if (isValidRefName(prefix, assemblyName)) {
-        if (suffix) {
-            const rangeMatch = /^(-?(\d+|\d{1,3}(,\d{3})*))(\.\.|-)(-?(\d+|\d{1,3}(,\d{3})*))$/.exec(suffix);
-            const singleMatch = /^(-?(\d+|\d{1,3}(,\d{3})*))(\.\.|-)?$/.exec(suffix);
-            if (rangeMatch) {
-                const [, start, , , , end] = rangeMatch;
-                if (start !== undefined && end !== undefined) {
-                    return {
-                        assemblyName,
-                        refName: prefix,
-                        start: +start.replaceAll(',', ''),
-                        end: +end.replaceAll(',', ''),
-                        reversed,
-                    };
-                }
-            }
-            else if (singleMatch) {
-                const [, start, , , separator] = singleMatch;
-                if (start !== undefined) {
-                    if (separator) {
-                        return {
-                            assemblyName,
-                            refName: prefix,
-                            start: +start.replaceAll(',', ''),
-                            reversed,
-                        };
-                    }
-                    return {
-                        assemblyName,
-                        refName: prefix,
-                        start: +start.replaceAll(',', ''),
-                        end: +start.replaceAll(',', ''),
-                        reversed,
-                    };
-                }
-            }
-            else {
-                throw new Error(`could not parse range "${suffix}" on location "${locString}"`);
-            }
-        }
-        else {
-            return {
-                assemblyName,
-                refName: prefix,
-                reversed,
-            };
-        }
-    }
-    else if (isValidRefName(location, assemblyName)) {
-        return {
-            assemblyName,
-            refName: location,
-            reversed,
-        };
-    }
-    throw new Error(`unknown reference sequence name in location "${locString}"`);
-}
-function parseLocString(locString, isValidRefName) {
-    const parsed = parseLocStringOneBased(locString, isValidRefName);
-    if (typeof parsed.start === 'number') {
-        parsed.start -= 1;
-    }
-    return parsed;
-}
-function compareLocs(locA, locB) {
-    const assemblyComp = locA.assemblyName || locB.assemblyName
-        ? (locA.assemblyName || '').localeCompare(locB.assemblyName || '')
-        : 0;
-    if (assemblyComp) {
-        return assemblyComp;
-    }
-    const refComp = locA.refName || locB.refName
-        ? (locA.refName || '').localeCompare(locB.refName || '')
-        : 0;
-    if (refComp) {
-        return refComp;
-    }
-    if (locA.start !== undefined && locB.start !== undefined) {
-        const startComp = locA.start - locB.start;
-        if (startComp) {
-            return startComp;
-        }
-    }
-    if (locA.end !== undefined && locB.end !== undefined) {
-        const endComp = locA.end - locB.end;
-        if (endComp) {
-            return endComp;
-        }
-    }
-    return 0;
-}
-function compareLocStrings(a, b, isValidRefName) {
-    const locA = parseLocString(a, isValidRefName);
-    const locB = parseLocString(b, isValidRefName);
-    return compareLocs(locA, locB);
-}
-function clamp(num, min, max) {
-    if (num < min) {
-        return min;
-    }
-    if (num > max) {
-        return max;
-    }
-    return num;
-}
-function roundToNearestPointOne(num) {
-    return Math.round(num * 10) / 10;
-}
-function bpToPx(bp, { reversed, end = 0, start = 0, }, bpPerPx) {
-    return roundToNearestPointOne((reversed ? end - bp : bp - start) / bpPerPx);
-}
-const oneEightyOverPi = 180 / Math.PI;
-const piOverOneEighty = Math.PI / 180;
-function radToDeg(radians) {
-    return (radians * oneEightyOverPi) % 360;
-}
-function degToRad(degrees) {
-    return (degrees * piOverOneEighty) % (2 * Math.PI);
-}
-function polarToCartesian(rho, theta) {
-    return [rho * Math.cos(theta), rho * Math.sin(theta)];
-}
-function cartesianToPolar(x, y) {
-    const rho = Math.sqrt(x * x + y * y);
-    const theta = Math.atan(y / x);
-    return [rho, theta];
-}
-function featureSpanPx(feature, region, bpPerPx) {
-    return bpSpanPx(feature.get('start'), feature.get('end'), region, bpPerPx);
-}
-function bpSpanPx(leftBp, rightBp, region, bpPerPx) {
-    const start = bpToPx(leftBp, region, bpPerPx);
-    const end = bpToPx(rightBp, region, bpPerPx);
-    return region.reversed ? [end, start] : [start, end];
-}
-function iterMap(iter, func, sizeHint) {
-    const results = Array.from({ length: sizeHint || 0 });
-    let counter = 0;
-    for (const item of iter) {
-        results[counter] = func(item);
-        counter += 1;
-    }
-    return results;
-}
-function findLastIndex(array, predicate) {
-    let l = array.length;
-    while (l--) {
-        if (predicate(array[l], l, array)) {
-            return l;
-        }
-    }
-    return -1;
-}
-function findLast(array, predicate) {
-    let l = array.length;
-    while (l--) {
-        if (predicate(array[l], l, array)) {
-            return array[l];
-        }
-    }
-    return undefined;
-}
-function renameRegionIfNeeded(refNameMap, region) {
-    if ((0, mobx_state_tree_1.isStateTreeNode)(region) && !(0, mobx_state_tree_1.isAlive)(region)) {
-        return region;
-    }
-    if (refNameMap === null || refNameMap === void 0 ? void 0 : refNameMap[region.refName]) {
-        region = (0, mobx_state_tree_1.isStateTreeNode)(region)
-            ? { ...(0, mobx_state_tree_1.getSnapshot)(region) }
-            : { ...region };
-        const newRef = refNameMap[region.refName];
-        if (newRef) {
-            return { ...region, refName: newRef, originalRefName: region.refName };
-        }
-    }
-    return region;
-}
-async function renameRegionsIfNeeded(assemblyManager, args) {
-    const { regions = [], adapterConfig } = args;
-    if (!args.sessionId) {
-        throw new Error('sessionId is required');
-    }
-    const assemblyNames = regions.map(region => region.assemblyName);
-    const assemblyMaps = Object.fromEntries(await Promise.all([...new Set(assemblyNames)].map(async (assemblyName) => {
-        return [
-            assemblyName,
-            await assemblyManager.getRefNameMapForAdapter(adapterConfig, assemblyName, args),
-        ];
-    })));
-    return {
-        ...args,
-        regions: regions.map((region, i) => renameRegionIfNeeded(assemblyMaps[assemblyNames[i]], region)),
-    };
-}
-function minmax(a, b) {
-    return [Math.min(a, b), Math.max(a, b)];
-}
-function shorten(name, max = 70, short = 30) {
-    return name.length > max
-        ? `${name.slice(0, short)}...${name.slice(-short)}`
-        : name;
-}
-function shorten2(name, max = 70) {
-    return name.length > max ? `${name.slice(0, max)}...` : name;
-}
-function stringify({ refName, coord, assemblyName, oob, }, useAssemblyName) {
-    return [
-        assemblyName && useAssemblyName ? `{${assemblyName}}` : '',
-        refName
-            ? `${shorten(refName)}:${toLocale(coord)}${oob ? ' (out of bounds)' : ''}`
-            : '',
-    ].join('');
-}
-exports.isElectron = /electron/i.test(typeof navigator !== 'undefined' ? navigator.userAgent : '');
-exports.complementTable = {
-    S: 'S',
-    w: 'w',
-    T: 'A',
-    r: 'y',
-    a: 't',
-    N: 'N',
-    K: 'M',
-    x: 'x',
-    d: 'h',
-    Y: 'R',
-    V: 'B',
-    y: 'r',
-    M: 'K',
-    h: 'd',
-    k: 'm',
-    C: 'G',
-    g: 'c',
-    t: 'a',
-    A: 'T',
-    n: 'n',
-    W: 'W',
-    X: 'X',
-    m: 'k',
-    v: 'b',
-    B: 'V',
-    s: 's',
-    H: 'D',
-    c: 'g',
-    D: 'H',
-    b: 'v',
-    R: 'Y',
-    G: 'C',
-};
-function revcom(str) {
-    var _a;
-    let revcomped = '';
-    for (let i = str.length - 1; i >= 0; i--) {
-        revcomped += (_a = exports.complementTable[str[i]]) !== null && _a !== void 0 ? _a : str[i];
-    }
-    return revcomped;
-}
-function reverse(str) {
-    let reversed = '';
-    for (let i = str.length - 1; i >= 0; i--) {
-        reversed += str[i];
-    }
-    return reversed;
-}
-function complement(str) {
-    var _a;
-    let comp = '';
-    for (const element of str) {
-        comp += (_a = exports.complementTable[element]) !== null && _a !== void 0 ? _a : element;
-    }
-    return comp;
-}
-exports.rIC = typeof jest === 'undefined'
-    ?
-        typeof window !== 'undefined' && window.requestIdleCallback
-            ? window.requestIdleCallback
-            : (cb) => setTimeout(() => {
-                cb();
-            }, 1)
-    : (cb) => {
-        cb();
-    };
-const widths = [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.2796875, 0.2765625, 0.3546875, 0.5546875, 0.5546875, 0.8890625, 0.665625, 0.190625, 0.3328125, 0.3328125, 0.3890625, 0.5828125, 0.2765625, 0.3328125, 0.2765625, 0.3015625, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.2765625, 0.2765625, 0.584375, 0.5828125, 0.584375, 0.5546875, 1.0140625, 0.665625, 0.665625, 0.721875, 0.721875, 0.665625, 0.609375, 0.7765625, 0.721875, 0.2765625, 0.5, 0.665625, 0.5546875, 0.8328125, 0.721875, 0.7765625, 0.665625, 0.7765625, 0.721875, 0.665625, 0.609375, 0.721875, 0.665625, 0.94375, 0.665625, 0.665625, 0.609375, 0.2765625, 0.3546875, 0.2765625, 0.4765625, 0.5546875, 0.3328125, 0.5546875, 0.5546875, 0.5, 0.5546875, 0.5546875, 0.2765625, 0.5546875, 0.5546875, 0.221875, 0.240625, 0.5, 0.221875, 0.8328125, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.3328125, 0.5, 0.2765625, 0.5546875, 0.5, 0.721875, 0.5, 0.5, 0.5, 0.3546875, 0.259375, 0.353125, 0.5890625];
-function measureText(str, fontSize = 10) {
-    var _a;
-    const avg = 0.5279276315789471;
-    const s = String(str);
-    let total = 0;
-    for (let i = 0; i < s.length; i++) {
-        const code = s.charCodeAt(i);
-        total += (_a = widths[code]) !== null && _a !== void 0 ? _a : avg;
-    }
-    return total * fontSize;
-}
-function getFrame(start, end, strand, phase) {
-    return strand === 1
-        ? (((start + phase) % 3) + 1)
-        : (-1 * ((end - phase) % 3) - 1);
-}
-exports.defaultStarts = ['ATG'];
-exports.defaultStops = ['TAA', 'TAG', 'TGA'];
-exports.defaultCodonTable = {
-    TCA: 'S',
-    TCC: 'S',
-    TCG: 'S',
-    TCT: 'S',
-    TTC: 'F',
-    TTT: 'F',
-    TTA: 'L',
-    TTG: 'L',
-    TAC: 'Y',
-    TAT: 'Y',
-    TAA: '*',
-    TAG: '*',
-    TGC: 'C',
-    TGT: 'C',
-    TGA: '*',
-    TGG: 'W',
-    CTA: 'L',
-    CTC: 'L',
-    CTG: 'L',
-    CTT: 'L',
-    CCA: 'P',
-    CCC: 'P',
-    CCG: 'P',
-    CCT: 'P',
-    CAC: 'H',
-    CAT: 'H',
-    CAA: 'Q',
-    CAG: 'Q',
-    CGA: 'R',
-    CGC: 'R',
-    CGG: 'R',
-    CGT: 'R',
-    ATA: 'I',
-    ATC: 'I',
-    ATT: 'I',
-    ATG: 'M',
-    ACA: 'T',
-    ACC: 'T',
-    ACG: 'T',
-    ACT: 'T',
-    AAC: 'N',
-    AAT: 'N',
-    AAA: 'K',
-    AAG: 'K',
-    AGC: 'S',
-    AGT: 'S',
-    AGA: 'R',
-    AGG: 'R',
-    GTA: 'V',
-    GTC: 'V',
-    GTG: 'V',
-    GTT: 'V',
-    GCA: 'A',
-    GCC: 'A',
-    GCG: 'A',
-    GCT: 'A',
-    GAC: 'D',
-    GAT: 'D',
-    GAA: 'E',
-    GAG: 'E',
-    GGA: 'G',
-    GGC: 'G',
-    GGG: 'G',
-    GGT: 'G',
-};
-function generateCodonTable(table) {
-    const tempCodonTable = {};
-    for (const codon of Object.keys(table)) {
-        const aa = table[codon];
-        const nucs = [];
-        for (let i = 0; i < 3; i++) {
-            const nuc = codon.charAt(i);
-            nucs[i] = [];
-            nucs[i][0] = nuc.toUpperCase();
-            nucs[i][1] = nuc.toLowerCase();
-        }
-        for (let i = 0; i < 2; i++) {
-            const n0 = nucs[0][i];
-            for (let j = 0; j < 2; j++) {
-                const n1 = nucs[1][j];
-                for (let k = 0; k < 2; k++) {
-                    const n2 = nucs[2][k];
-                    const triplet = n0 + n1 + n2;
-                    tempCodonTable[triplet] = aa;
-                }
-            }
-        }
-    }
-    return tempCodonTable;
-}
-async function updateStatus(msg, cb, fn) {
-    cb(msg);
-    const res = await fn();
-    cb('');
-    return res;
-}
-async function updateStatus2(msg, cb, stopToken, fn) {
-    cb(msg);
-    const res = await fn();
-    (0, stopToken_1.checkStopToken)(stopToken);
-    cb('');
-    return res;
-}
-function hashCode(str) {
-    let hash = 0;
-    if (str.length === 0) {
-        return hash;
-    }
-    for (let i = 0; i < str.length; i++) {
-        const chr = str.charCodeAt(i);
-        hash = (hash << 5) - hash + chr;
-        hash |= 0;
-    }
-    return hash;
-}
-function objectHash(obj) {
-    return `${hashCode(JSON.stringify(obj))}`;
-}
-async function bytesForRegions(regions, index) {
-    const blockResults = await Promise.all(regions.map(r => index.blocksForRange(r.refName, r.start, r.end)));
-    return blockResults
-        .flat()
-        .map(block => ({
-        start: block.minv.blockPosition,
-        end: block.maxv.blockPosition + 65535,
-    }))
-        .reduce((a, b) => a + b.end - b.start, 0);
-}
-function isSupportedIndexingAdapter(type = '') {
-    return [
-        'Gff3TabixAdapter',
-        'VcfTabixAdapter',
-        'Gff3Adapter',
-        'VcfAdapter',
-    ].includes(type);
-}
-function getBpDisplayStr(total) {
-    if (Math.floor(total / 1000000) > 0) {
-        return `${r(total / 1000000)}Mbp`;
-    }
-    else if (Math.floor(total / 1000) > 0) {
-        return `${r(total / 1000)}Kbp`;
-    }
-    else {
-        return `${Math.floor(total)}bp`;
-    }
-}
-function r(s) {
-    return toLocale(Number.parseFloat(s.toPrecision(3)));
-}
-function getProgressDisplayStr(current, total) {
-    if (Math.floor(total / 1000000) > 0) {
-        return `${r(current / 1000000)}/${r(total / 1000000)}Mb`;
-    }
-    else if (Math.floor(total / 1000) > 0) {
-        return `${r(current / 1000)}/${r(total / 1000)}Kb`;
-    }
-    else {
-        return `${r(current)}/${r(total)}}bytes`;
-    }
-}
-function toLocale(n) {
-    return n.toLocaleString('en-US');
-}
-function getTickDisplayStr(totalBp, bpPerPx) {
-    return Math.floor(bpPerPx / 1000) > 0
-        ? `${toLocale(Number.parseFloat((totalBp / 1000000).toFixed(2)))}M`
-        : toLocale(Math.floor(totalBp));
-}
-function getViewParams(model, exportSVG) {
-    const { dynamicBlocks, staticBlocks, offsetPx } = getContainingView(model);
-    const b = (dynamicBlocks === null || dynamicBlocks === void 0 ? void 0 : dynamicBlocks.contentBlocks[0]) || {};
-    const staticblock = (staticBlocks === null || staticBlocks === void 0 ? void 0 : staticBlocks.contentBlocks[0]) || {};
-    const staticblock1 = (staticBlocks === null || staticBlocks === void 0 ? void 0 : staticBlocks.contentBlocks[1]) || {};
-    return {
-        offsetPx: exportSVG ? 0 : offsetPx - staticblock.offsetPx,
-        offsetPx1: exportSVG ? 0 : offsetPx - staticblock1.offsetPx,
-        start: b.start,
-        end: b.end,
-    };
-}
-function getLayoutId({ sessionId, layoutId, }) {
-    return `${sessionId}-${layoutId}`;
-}
-function useLocalStorage(key, initialValue) {
-    const [storedValue, setStoredValue] = (0, react_1.useState)(() => {
-        if (typeof window === 'undefined') {
-            return initialValue;
-        }
-        try {
-            const item = window.localStorage.getItem(key);
-            return item ? JSON.parse(item) : initialValue;
-        }
-        catch (error) {
-            console.error(error);
-            return initialValue;
-        }
-    });
-    const setValue = (value) => {
-        try {
-            const valueToStore = value instanceof Function ? value(storedValue) : value;
-            setStoredValue(valueToStore);
-            if (typeof window !== 'undefined') {
-                window.localStorage.setItem(key, JSON.stringify(valueToStore));
-            }
-        }
-        catch (error) {
-            console.error(error);
-        }
-    };
-    return [storedValue, setValue];
-}
-function getUriLink(value) {
-    const { uri, baseUri = '' } = value;
-    let href;
-    try {
-        href = new URL(uri, baseUri).href;
-    }
-    catch (e) {
-        href = uri;
-    }
-    return href;
-}
-function getStr(obj) {
-    return isObject(obj)
-        ? (0, types_1.isUriLocation)(obj)
-            ? getUriLink(obj)
-            : JSON.stringify(obj)
-        : String(obj);
-}
-function coarseStripHTML(s) {
-    return s.replaceAll(/(<([^>]+)>)/gi, '');
-}
-function linkify(s) {
-    const pattern = /(^|[\s\n]|<[A-Za-z]*\/?>)((?:https?|ftp):\/\/[-A-Z0-9+\u0026\u2019@#/%?=()~_|!:,.;]*[-A-Z0-9+\u0026@#/%=~()_|])/gi;
-    return s.replaceAll(pattern, '$1<a href=\'$2\' target="_blank">$2</a>');
-}
-function measureGridWidth(elements, args) {
-    const { padding = 30, minWidth = 80, fontSize = 12, maxWidth = 1000, stripHTML = false, } = args || {};
-    return max(elements
-        .map(element => getStr(element))
-        .map(str => (stripHTML ? coarseStripHTML(str) : str))
-        .map(str => measureText(str, fontSize))
-        .map(n => Math.min(Math.max(n + padding, minWidth), maxWidth)));
-}
-function getEnv(obj) {
-    return (0, mobx_state_tree_1.getEnv)(obj);
-}
-function localStorageGetItem(item) {
-    return typeof localStorage !== 'undefined'
-        ? localStorage.getItem(item)
-        : undefined;
-}
-function localStorageSetItem(str, item) {
-    if (typeof localStorage !== 'undefined') {
-        localStorage.setItem(str, item);
-    }
-}
-function max(arr, init = Number.NEGATIVE_INFINITY) {
-    let max = init;
-    for (const entry of arr) {
-        max = Math.max(entry, max);
-    }
-    return max;
-}
-function min(arr, init = Number.POSITIVE_INFINITY) {
-    let min = init;
-    for (const entry of arr) {
-        min = Math.min(entry, min);
-    }
-    return min;
-}
-function sum(arr) {
-    let sum = 0;
-    for (const entry of arr) {
-        sum += entry;
-    }
-    return sum;
-}
-function avg(arr) {
-    return sum(arr) / arr.length;
-}
-function groupBy(array, predicate) {
-    const result = {};
-    for (const value of array) {
-        const t = predicate(value);
-        if (!result[t]) {
-            result[t] = [];
-        }
-        result[t].push(value);
-    }
-    return result;
-}
-function notEmpty(value) {
-    return value !== null && value !== undefined;
-}
-function mergeIntervals(intervals, w = 5000) {
-    if (intervals.length <= 1) {
-        return intervals;
-    }
-    const stack = [];
-    let top = null;
-    intervals = intervals.sort((a, b) => a.start - b.start);
-    stack.push(intervals[0]);
-    for (let i = 1; i < intervals.length; i++) {
-        top = stack.at(-1);
-        if (top.end + w < intervals[i].start - w) {
-            stack.push(intervals[i]);
-        }
-        else if (top.end < intervals[i].end) {
-            top.end = Math.max(top.end, intervals[i].end);
-            stack.pop();
-            stack.push(top);
-        }
-    }
-    return stack;
-}
-function gatherOverlaps(regions, w = 5000) {
-    const memo = {};
-    for (const x of regions) {
-        if (!memo[x.refName]) {
-            memo[x.refName] = [];
-        }
-        memo[x.refName].push(x);
-    }
-    return Object.values(memo).flatMap(group => mergeIntervals(group.sort((a, b) => a.start - b.start), w));
-}
-function stripAlpha(str) {
-    return (0, colord_1.colord)(str).alpha(1).toHex();
-}
-function getStrokeProps(str) {
-    if (str) {
-        const c = (0, colord_1.colord)(str);
-        return {
-            strokeOpacity: c.alpha(),
-            stroke: c.alpha(1).toHex(),
-        };
-    }
-    else {
-        return {};
-    }
-}
-function getFillProps(str) {
-    if (str) {
-        const c = (0, colord_1.colord)(str);
-        return {
-            fillOpacity: c.alpha(),
-            fill: c.alpha(1).toHex(),
-        };
-    }
-    else {
-        return {};
-    }
-}
-function renderToStaticMarkup(node) {
-    const div = document.createElement('div');
-    (0, react_dom_1.flushSync)(() => {
-        (0, client_1.createRoot)(div).render(node);
-    });
-    return div.innerHTML.replaceAll(/\brgba\((.+?),[^,]+?\)/g, 'rgb($1)');
-}
-function isGzip(buf) {
-    return buf[0] === 31 && buf[1] === 139 && buf[2] === 8;
-}
-async function fetchAndMaybeUnzip(loc, opts = {}) {
-    const { statusCallback = () => { } } = opts;
-    const buf = await updateStatus('Downloading file', statusCallback, () => loc.readFile(opts));
-    return isGzip(buf)
-        ? await updateStatus('Unzipping', statusCallback, () => (0, bgzf_filehandle_1.unzip)(buf))
-        : buf;
-}
-async function fetchAndMaybeUnzipText(loc, opts) {
-    const buffer = await fetchAndMaybeUnzip(loc, opts);
-    if (buffer.length > 536870888) {
-        throw new Error('Data exceeds maximum string length (512MB)');
-    }
-    return new TextDecoder('utf8', { fatal: true }).decode(buffer);
-}
-function isObject(x) {
-    return typeof x === 'object' && x !== null;
-}
-function localStorageGetNumber(key, defaultVal) {
-    var _a;
-    return +((_a = localStorageGetItem(key)) !== null && _a !== void 0 ? _a : defaultVal);
-}
-function localStorageGetBoolean(key, defaultVal) {
-    return Boolean(JSON.parse(localStorageGetItem(key) || JSON.stringify(defaultVal)));
-}
-function localStorageSetBoolean(key, value) {
-    localStorageSetItem(key, JSON.stringify(value));
-}
-function forEachWithStopTokenCheck(iter, stopToken, arg, durationMs = 400) {
-    let start = performance.now();
-    let i = 0;
-    for (const t of iter) {
-        if (performance.now() - start > durationMs) {
-            (0, stopToken_1.checkStopToken)(stopToken);
-            start = performance.now();
-        }
-        arg(t, i++);
-    }
-}
-function testAdapter(fileName, regex, adapterHint, expected) {
-    return (regex.test(fileName) && !adapterHint) || adapterHint === expected;
-}
-var simpleFeature_1 = require("./simpleFeature");
-Object.defineProperty(exports, "SimpleFeature", { enumerable: true, get: function () { return __importDefault(simpleFeature_1).default; } });
-Object.defineProperty(exports, "isFeature", { enumerable: true, get: function () { return simpleFeature_1.isFeature; } });
-var blobToDataURL_1 = require("./blobToDataURL");
-Object.defineProperty(exports, "blobToDataURL", { enumerable: true, get: function () { return blobToDataURL_1.blobToDataURL; } });
-var makeAbortableReaction_1 = require("./makeAbortableReaction");
-Object.defineProperty(exports, "makeAbortableReaction", { enumerable: true, get: function () { return makeAbortableReaction_1.makeAbortableReaction; } });
-__exportStar(require("./aborting"), exports);