@jbrowse/core 3.6.5 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (940) hide show
  1. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +32 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +13 -0
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +43 -0
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +8 -0
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +7 -0
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +2 -0
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +17 -0
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +2 -0
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +7 -0
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +20 -0
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +2 -0
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +24 -0
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +57 -0
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +11 -0
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +42 -0
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +24 -0
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +2 -0
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +14 -0
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +14 -0
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +22 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +24 -0
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +7 -0
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.js +1 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +26 -0
  26. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +10 -0
  27. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +41 -0
  28. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +7 -0
  29. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +44 -0
  30. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +7 -0
  31. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +34 -0
  32. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +8 -0
  33. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +26 -0
  34. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +3 -0
  35. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +29 -0
  36. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +6 -0
  37. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +6 -0
  38. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +11 -0
  39. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +8 -0
  40. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +40 -0
  41. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +8 -0
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +105 -0
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +5 -0
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +64 -0
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +6 -0
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +48 -0
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.d.ts +1 -0
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -0
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +31 -0
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +83 -0
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +16 -0
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +83 -0
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +8 -0
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +16 -0
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +10 -0
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +52 -0
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +9 -0
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +21 -0
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +10 -0
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +22 -0
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +80 -0
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +583 -0
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +141 -0
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +1116 -0
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -0
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.js +1 -0
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +13 -0
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +73 -0
  69. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +10 -0
  70. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +42 -0
  71. package/esm/BaseFeatureWidget/configSchema.d.ts +2 -0
  72. package/esm/BaseFeatureWidget/configSchema.js +3 -0
  73. package/esm/BaseFeatureWidget/index.d.ts +2 -0
  74. package/esm/BaseFeatureWidget/index.js +2 -0
  75. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +101 -0
  76. package/esm/BaseFeatureWidget/stateModelFactory.js +96 -0
  77. package/esm/BaseFeatureWidget/types.d.ts +22 -0
  78. package/esm/BaseFeatureWidget/types.js +1 -0
  79. package/esm/BaseFeatureWidget/util.d.ts +51 -0
  80. package/esm/BaseFeatureWidget/util.js +95 -0
  81. package/esm/CorePlugin.d.ts +6 -0
  82. package/esm/CorePlugin.js +24 -0
  83. package/esm/PhasedScheduler.js +25 -0
  84. package/esm/Plugin.d.ts +13 -0
  85. package/esm/Plugin.js +9 -0
  86. package/esm/PluginLoader.d.ts +64 -0
  87. package/esm/PluginLoader.js +164 -0
  88. package/esm/PluginManager.d.ts +125 -0
  89. package/esm/PluginManager.js +414 -0
  90. package/esm/ReExports/BaseFeatureDetails.js +9 -0
  91. package/esm/ReExports/DataGrid.js +1 -0
  92. package/esm/ReExports/MuiDataGridReExports.js +131 -0
  93. package/esm/ReExports/MuiReExports.d.ts +134 -0
  94. package/esm/ReExports/MuiReExports.js +115 -0
  95. package/esm/ReExports/index.d.ts +1 -0
  96. package/esm/ReExports/index.js +1 -0
  97. package/esm/ReExports/lazify.js +10 -0
  98. package/esm/ReExports/list.js +275 -0
  99. package/esm/ReExports/modules.js +149 -0
  100. package/esm/TextSearch/BaseResults.d.ts +46 -0
  101. package/esm/TextSearch/BaseResults.js +67 -0
  102. package/esm/TextSearch/TextSearchManager.d.ts +48 -0
  103. package/esm/TextSearch/TextSearchManager.js +77 -0
  104. package/esm/assemblyManager/assembly.d.ts +75 -0
  105. package/esm/assemblyManager/assembly.js +328 -0
  106. package/esm/assemblyManager/assemblyConfigSchema.d.ts +27 -0
  107. package/esm/assemblyManager/assemblyConfigSchema.js +51 -0
  108. package/esm/assemblyManager/assemblyManager.d.ts +528 -0
  109. package/esm/assemblyManager/assemblyManager.js +131 -0
  110. package/esm/assemblyManager/index.d.ts +3 -0
  111. package/esm/assemblyManager/index.js +2 -0
  112. package/esm/configuration/configurationSchema.d.ts +37 -0
  113. package/esm/configuration/configurationSchema.js +230 -0
  114. package/esm/configuration/configurationSlot.d.ts +33 -0
  115. package/esm/configuration/configurationSlot.js +239 -0
  116. package/esm/configuration/index.d.ts +3 -0
  117. package/esm/configuration/index.js +2 -0
  118. package/esm/configuration/types.d.ts +14 -0
  119. package/esm/configuration/types.js +1 -0
  120. package/esm/configuration/util.d.ts +10 -0
  121. package/esm/configuration/util.js +123 -0
  122. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +16 -0
  123. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +31 -0
  124. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +24 -0
  125. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +68 -0
  126. package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +18 -0
  127. package/esm/data_adapters/BaseAdapter/BaseOptions.js +1 -0
  128. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +10 -0
  129. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.js +1 -0
  130. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +11 -0
  131. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +12 -0
  132. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +6 -0
  133. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.js +1 -0
  134. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +6 -0
  135. package/esm/data_adapters/BaseAdapter/RegionsAdapter.js +1 -0
  136. package/esm/data_adapters/BaseAdapter/index.d.ts +13 -0
  137. package/esm/data_adapters/BaseAdapter/index.js +5 -0
  138. package/esm/data_adapters/BaseAdapter/stats.d.ts +10 -0
  139. package/esm/data_adapters/BaseAdapter/stats.js +48 -0
  140. package/esm/data_adapters/BaseAdapter/types.d.ts +23 -0
  141. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  142. package/esm/data_adapters/BaseAdapter/util.d.ts +12 -0
  143. package/esm/data_adapters/BaseAdapter/util.js +15 -0
  144. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +6 -0
  145. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +28 -0
  146. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +9 -0
  147. package/esm/data_adapters/CytobandAdapter/configSchema.js +24 -0
  148. package/esm/data_adapters/CytobandAdapter/index.d.ts +2 -0
  149. package/esm/data_adapters/CytobandAdapter/index.js +12 -0
  150. package/esm/data_adapters/dataAdapterCache.d.ts +14 -0
  151. package/esm/data_adapters/dataAdapterCache.js +54 -0
  152. package/esm/data_adapters/util.js +4 -0
  153. package/esm/pluggableElementTypes/AdapterType.d.ts +25 -0
  154. package/esm/pluggableElementTypes/AdapterType.js +17 -0
  155. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  156. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +10 -0
  157. package/esm/pluggableElementTypes/ConnectionType.d.ts +20 -0
  158. package/esm/pluggableElementTypes/ConnectionType.js +16 -0
  159. package/esm/pluggableElementTypes/DisplayType.d.ts +30 -0
  160. package/esm/pluggableElementTypes/DisplayType.js +20 -0
  161. package/esm/pluggableElementTypes/GlyphType.d.ts +43 -0
  162. package/esm/pluggableElementTypes/GlyphType.js +18 -0
  163. package/esm/pluggableElementTypes/InternetAccountType.d.ts +12 -0
  164. package/esm/pluggableElementTypes/InternetAccountType.js +10 -0
  165. package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
  166. package/esm/pluggableElementTypes/RpcMethodType.d.ts +19 -0
  167. package/esm/pluggableElementTypes/RpcMethodType.js +88 -0
  168. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +11 -0
  169. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +28 -0
  170. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +18 -0
  171. package/esm/pluggableElementTypes/TextSearchAdapterType.js +15 -0
  172. package/esm/pluggableElementTypes/TrackType.d.ts +16 -0
  173. package/esm/pluggableElementTypes/TrackType.js +14 -0
  174. package/esm/pluggableElementTypes/ViewType.d.ts +29 -0
  175. package/esm/pluggableElementTypes/ViewType.js +18 -0
  176. package/esm/pluggableElementTypes/WidgetType.d.ts +27 -0
  177. package/esm/pluggableElementTypes/WidgetType.js +18 -0
  178. package/esm/pluggableElementTypes/index.d.ts +27 -0
  179. package/esm/pluggableElementTypes/index.js +14 -0
  180. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +29 -0
  181. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +35 -0
  182. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +180 -0
  183. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +104 -0
  184. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +74 -0
  185. package/esm/pluggableElementTypes/models/BaseTrackModel.js +203 -0
  186. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +52 -0
  187. package/esm/pluggableElementTypes/models/BaseViewModel.js +42 -0
  188. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +86 -0
  189. package/esm/pluggableElementTypes/models/InternetAccountModel.js +151 -0
  190. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +16 -0
  191. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -0
  192. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +27 -0
  193. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +32 -0
  194. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +87 -0
  195. package/esm/pluggableElementTypes/models/baseTrackConfig.js +134 -0
  196. package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +11 -0
  197. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +158 -0
  198. package/esm/pluggableElementTypes/models/index.d.ts +14 -0
  199. package/esm/pluggableElementTypes/models/index.js +8 -0
  200. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.d.ts +4 -0
  201. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +9 -0
  202. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +5 -0
  203. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +17 -0
  204. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +7 -0
  205. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +108 -0
  206. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +5 -0
  207. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +91 -0
  208. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +11 -0
  209. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.js +1 -0
  210. package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +52 -0
  211. package/esm/pluggableElementTypes/renderers/BoxRendererType.js +78 -0
  212. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +4 -0
  213. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +4 -0
  214. package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +58 -0
  215. package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +77 -0
  216. package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +31 -0
  217. package/esm/pluggableElementTypes/renderers/LayoutSession.js +37 -0
  218. package/esm/pluggableElementTypes/renderers/RendererType.d.ts +28 -0
  219. package/esm/pluggableElementTypes/renderers/RendererType.js +20 -0
  220. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +57 -0
  221. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +113 -0
  222. package/esm/pluggableElementTypes/renderers/index.d.ts +6 -0
  223. package/esm/pluggableElementTypes/renderers/index.js +6 -0
  224. package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +30 -0
  225. package/esm/pluggableElementTypes/renderers/util.d.ts +3 -0
  226. package/esm/pluggableElementTypes/renderers/util.js +14 -0
  227. package/esm/rpc/BaseRpcDriver.d.ts +40 -0
  228. package/esm/rpc/BaseRpcDriver.js +116 -0
  229. package/esm/rpc/MainThreadRpcDriver.d.ts +14 -0
  230. package/esm/rpc/MainThreadRpcDriver.js +33 -0
  231. package/esm/rpc/RpcManager.d.ts +35 -0
  232. package/esm/rpc/RpcManager.js +63 -0
  233. package/esm/rpc/WebWorkerRpcDriver.d.ts +31 -0
  234. package/esm/rpc/WebWorkerRpcDriver.js +77 -0
  235. package/esm/rpc/baseRpcConfig.d.ts +8 -0
  236. package/esm/rpc/baseRpcConfig.js +10 -0
  237. package/esm/rpc/configSchema.d.ts +9 -0
  238. package/esm/rpc/configSchema.js +22 -0
  239. package/esm/rpc/coreRpcMethods.d.ts +12 -0
  240. package/esm/rpc/coreRpcMethods.js +12 -0
  241. package/esm/rpc/mainThreadRpcConfig.d.ts +8 -0
  242. package/esm/rpc/mainThreadRpcConfig.js +8 -0
  243. package/esm/rpc/methods/CoreFreeResources.d.ts +6 -0
  244. package/esm/rpc/methods/CoreFreeResources.js +14 -0
  245. package/esm/rpc/methods/CoreGetExportData.d.ts +19 -0
  246. package/esm/rpc/methods/CoreGetExportData.js +18 -0
  247. package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +17 -0
  248. package/esm/rpc/methods/CoreGetFeatureDensityStats.js +25 -0
  249. package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +11 -0
  250. package/esm/rpc/methods/CoreGetFeatureDetails.js +24 -0
  251. package/esm/rpc/methods/CoreGetFeatures.d.ts +18 -0
  252. package/esm/rpc/methods/CoreGetFeatures.js +31 -0
  253. package/esm/rpc/methods/CoreGetFileInfo.d.ts +9 -0
  254. package/esm/rpc/methods/CoreGetFileInfo.js +15 -0
  255. package/esm/rpc/methods/CoreGetMetadata.d.ts +9 -0
  256. package/esm/rpc/methods/CoreGetMetadata.js +15 -0
  257. package/esm/rpc/methods/CoreGetRefNames.d.ts +10 -0
  258. package/esm/rpc/methods/CoreGetRefNames.js +19 -0
  259. package/esm/rpc/methods/CoreGetRegions.d.ts +8 -0
  260. package/esm/rpc/methods/CoreGetRegions.js +15 -0
  261. package/esm/rpc/methods/CoreGetSequence.d.ts +13 -0
  262. package/esm/rpc/methods/CoreGetSequence.js +17 -0
  263. package/esm/rpc/methods/CoreRender.d.ts +14 -0
  264. package/esm/rpc/methods/CoreRender.js +35 -0
  265. package/esm/rpc/methods/CoreSaveFeatureData.d.ts +16 -0
  266. package/esm/rpc/methods/CoreSaveFeatureData.js +32 -0
  267. package/esm/rpc/methods/util.d.ts +15 -0
  268. package/esm/rpc/methods/util.js +7 -0
  269. package/esm/rpc/webWorkerRpcConfig.d.ts +8 -0
  270. package/esm/rpc/webWorkerRpcConfig.js +8 -0
  271. package/esm/ui/AppLogo.d.ts +7 -0
  272. package/esm/ui/AppLogo.js +10 -0
  273. package/esm/ui/AssemblySelector.d.ts +13 -0
  274. package/esm/ui/AssemblySelector.js +39 -0
  275. package/esm/ui/BaseTooltip.d.ts +8 -0
  276. package/esm/ui/BaseTooltip.js +42 -0
  277. package/esm/ui/CascadingMenu.d.ts +30 -0
  278. package/esm/ui/CascadingMenu.js +48 -0
  279. package/esm/ui/CascadingMenuButton.d.ts +26 -0
  280. package/esm/ui/CascadingMenuButton.js +24 -0
  281. package/esm/ui/CascadingMenuHelpDialog.d.ts +5 -0
  282. package/esm/ui/CascadingMenuHelpDialog.js +10 -0
  283. package/esm/ui/CascadingMenuHelpIconButton.d.ts +5 -0
  284. package/esm/ui/CascadingMenuHelpIconButton.js +15 -0
  285. package/esm/ui/ColorPicker.js +62 -0
  286. package/esm/ui/ConfirmDialog.d.ts +10 -0
  287. package/esm/ui/ConfirmDialog.js +13 -0
  288. package/esm/ui/DataGridFlexContainer.d.ts +5 -0
  289. package/esm/ui/DataGridFlexContainer.js +12 -0
  290. package/esm/ui/Dialog.d.ts +7 -0
  291. package/esm/ui/Dialog.js +45 -0
  292. package/esm/ui/DraggableDialog.js +27 -0
  293. package/esm/ui/DropDownMenu.d.ts +6 -0
  294. package/esm/ui/DropDownMenu.js +24 -0
  295. package/esm/ui/EditableTypography.js +60 -0
  296. package/esm/ui/ErrorBoundary.d.ts +17 -0
  297. package/esm/ui/ErrorBoundary.js +16 -0
  298. package/esm/ui/ErrorMessage.js +56 -0
  299. package/esm/ui/ErrorMessageStackTraceContents.d.ts +4 -0
  300. package/esm/ui/ErrorMessageStackTraceContents.js +25 -0
  301. package/esm/ui/ErrorMessageStackTraceDialog.js +108 -0
  302. package/esm/ui/ExternalLink.js +7 -0
  303. package/esm/ui/FactoryResetDialog.js +18 -0
  304. package/esm/ui/FatalErrorDialog.js +18 -0
  305. package/esm/ui/FileSelector/FileSelector.d.ts +11 -0
  306. package/esm/ui/FileSelector/FileSelector.js +52 -0
  307. package/esm/ui/FileSelector/LocalFileChooser.d.ts +6 -0
  308. package/esm/ui/FileSelector/LocalFileChooser.js +39 -0
  309. package/esm/ui/FileSelector/LocationInput.d.ts +9 -0
  310. package/esm/ui/FileSelector/LocationInput.js +15 -0
  311. package/esm/ui/FileSelector/SourceTypeSelector.d.ts +9 -0
  312. package/esm/ui/FileSelector/SourceTypeSelector.js +38 -0
  313. package/esm/ui/FileSelector/UrlChooser.d.ts +8 -0
  314. package/esm/ui/FileSelector/UrlChooser.js +17 -0
  315. package/esm/ui/FileSelector/index.d.ts +1 -0
  316. package/esm/ui/FileSelector/index.js +1 -0
  317. package/esm/ui/FileSelector/useInternetAccounts.d.ts +178 -0
  318. package/esm/ui/FileSelector/useInternetAccounts.js +18 -0
  319. package/esm/ui/HoverMenu.js +15 -0
  320. package/esm/ui/Icons.js +14 -0
  321. package/esm/ui/LoadingEllipses.d.ts +7 -0
  322. package/esm/ui/LoadingEllipses.js +31 -0
  323. package/esm/ui/Logo.js +42 -0
  324. package/esm/ui/Menu.d.ts +2 -0
  325. package/esm/ui/Menu.js +1 -0
  326. package/esm/ui/MenuButton.d.ts +1 -0
  327. package/esm/ui/MenuButton.js +1 -0
  328. package/esm/ui/MenuItems.d.ts +15 -0
  329. package/esm/ui/MenuItems.js +59 -0
  330. package/esm/ui/MenuTypes.d.ts +39 -0
  331. package/esm/ui/MenuTypes.js +1 -0
  332. package/esm/ui/PrerenderedCanvas.d.ts +10 -0
  333. package/esm/ui/PrerenderedCanvas.js +33 -0
  334. package/esm/ui/RedErrorMessageBox.js +16 -0
  335. package/esm/ui/ResizeHandle.js +67 -0
  336. package/esm/ui/ReturnToImportFormDialog.js +13 -0
  337. package/esm/ui/SanitizedHTML.js +61 -0
  338. package/esm/ui/Snackbar.d.ts +10 -0
  339. package/esm/ui/Snackbar.js +14 -0
  340. package/esm/ui/SnackbarContents.d.ts +5 -0
  341. package/esm/ui/SnackbarContents.js +11 -0
  342. package/esm/ui/SnackbarModel.d.ts +17 -0
  343. package/esm/ui/SnackbarModel.js +55 -0
  344. package/esm/ui/colors.js +67 -0
  345. package/esm/ui/index.d.ts +20 -0
  346. package/esm/ui/index.js +20 -0
  347. package/esm/ui/react-colorful.d.ts +3 -0
  348. package/esm/ui/react-colorful.js +416 -0
  349. package/esm/ui/theme.d.ts +58 -0
  350. package/esm/ui/theme.js +392 -0
  351. package/esm/ui/useEvent.js +10 -0
  352. package/esm/util/Base1DUtils.d.ts +38 -0
  353. package/esm/util/Base1DUtils.js +205 -0
  354. package/esm/util/Base1DViewModel.d.ts +61 -0
  355. package/esm/util/Base1DViewModel.js +129 -0
  356. package/esm/util/QuickLRU/index.d.ts +1 -0
  357. package/esm/util/QuickLRU/index.js +1 -0
  358. package/esm/util/TimeTraveller.d.ts +19 -0
  359. package/esm/util/TimeTraveller.js +94 -0
  360. package/esm/util/aborting.js +42 -0
  361. package/esm/util/analytics.js +80 -0
  362. package/esm/util/blobToDataURL.js +14 -0
  363. package/esm/util/blockTypes.d.ts +59 -0
  364. package/esm/util/blockTypes.js +119 -0
  365. package/esm/util/calculateDynamicBlocks.d.ts +3 -0
  366. package/esm/util/calculateDynamicBlocks.js +104 -0
  367. package/esm/util/calculateStaticBlocks.d.ts +13 -0
  368. package/esm/util/calculateStaticBlocks.js +106 -0
  369. package/esm/util/coarseStripHTML.d.ts +1 -0
  370. package/esm/util/coarseStripHTML.js +17 -0
  371. package/esm/util/color/cssColorsLevel4.js +156 -0
  372. package/esm/util/color/index.d.ts +5 -0
  373. package/esm/util/color/index.js +39 -0
  374. package/esm/util/colord.d.ts +9 -0
  375. package/esm/util/colord.js +14 -0
  376. package/esm/util/compositeMap.d.ts +11 -0
  377. package/esm/util/compositeMap.js +59 -0
  378. package/esm/util/convertCodingSequenceToPeptides.d.ts +6 -0
  379. package/esm/util/convertCodingSequenceToPeptides.js +9 -0
  380. package/esm/util/dedupe.js +12 -0
  381. package/esm/util/fetchSeq.d.ts +8 -0
  382. package/esm/util/fetchSeq.js +23 -0
  383. package/esm/util/flatbush/index.d.ts +25 -0
  384. package/esm/util/flatbush/index.js +423 -0
  385. package/esm/util/flatqueue/index.d.ts +11 -0
  386. package/esm/util/flatqueue/index.js +61 -0
  387. package/esm/util/formatFastaStrings.js +8 -0
  388. package/esm/util/idMaker.js +21 -0
  389. package/esm/util/index.d.ts +271 -0
  390. package/esm/util/index.js +873 -0
  391. package/esm/util/io/RemoteFileWithRangeCache.js +71 -0
  392. package/esm/util/io/index.d.ts +7 -0
  393. package/esm/util/io/index.js +92 -0
  394. package/esm/util/isWebWorker.d.ts +1 -0
  395. package/esm/util/isWebWorker.js +4 -0
  396. package/esm/util/jexl.d.ts +2 -0
  397. package/esm/util/jexl.js +49 -0
  398. package/esm/util/jexlStrings.js +17 -0
  399. package/esm/util/layouts/BaseLayout.d.ts +30 -0
  400. package/esm/util/layouts/BaseLayout.js +1 -0
  401. package/esm/util/layouts/GranularRectLayout.d.ts +37 -0
  402. package/esm/util/layouts/GranularRectLayout.js +418 -0
  403. package/esm/util/layouts/MultiLayout.d.ts +12 -0
  404. package/esm/util/layouts/MultiLayout.js +40 -0
  405. package/esm/util/layouts/PileupLayout.d.ts +41 -0
  406. package/esm/util/layouts/PileupLayout.js +202 -0
  407. package/esm/util/layouts/PrecomputedLayout.d.ts +30 -0
  408. package/esm/util/layouts/PrecomputedLayout.js +71 -0
  409. package/esm/util/layouts/SceneGraph.js +121 -0
  410. package/esm/util/layouts/index.d.ts +8 -0
  411. package/esm/util/layouts/index.js +6 -0
  412. package/esm/util/layouts/intervalUtils.d.ts +3 -0
  413. package/esm/util/layouts/intervalUtils.js +63 -0
  414. package/esm/util/librpc.d.ts +2 -0
  415. package/esm/util/librpc.js +1 -0
  416. package/esm/util/linkify.d.ts +1 -0
  417. package/esm/util/linkify.js +5 -0
  418. package/esm/util/locString.d.ts +9 -0
  419. package/esm/util/locString.js +62 -0
  420. package/esm/util/makeAbortableReaction.d.ts +3 -0
  421. package/esm/util/makeAbortableReaction.js +47 -0
  422. package/esm/util/map-obj/index.d.ts +13 -0
  423. package/esm/util/map-obj/index.js +92 -0
  424. package/esm/util/mst-reflection.d.ts +11 -0
  425. package/esm/util/mst-reflection.js +54 -0
  426. package/esm/util/nanoid.d.ts +5 -0
  427. package/esm/util/nanoid.js +36 -0
  428. package/esm/util/nextTick.js +3 -0
  429. package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +5 -0
  430. package/esm/util/offscreenCanvasGetSerializingSvg.js +9 -0
  431. package/esm/util/offscreenCanvasPonyfill.d.ts +5 -0
  432. package/esm/util/offscreenCanvasPonyfill.js +57 -0
  433. package/esm/util/offscreenCanvasUtils.d.ts +12 -0
  434. package/esm/util/offscreenCanvasUtils.js +19 -0
  435. package/esm/util/parseLineByLine.js +22 -0
  436. package/esm/util/range.js +21 -0
  437. package/esm/util/renderToAbstractCanvas.d.ts +17 -0
  438. package/esm/util/renderToAbstractCanvas.js +53 -0
  439. package/esm/util/rpc.d.ts +2 -0
  440. package/esm/util/rpc.js +6 -0
  441. package/esm/util/rxjs.d.ts +4 -0
  442. package/esm/util/rxjs.js +16 -0
  443. package/esm/util/simpleFeature.d.ts +44 -0
  444. package/esm/util/simpleFeature.js +81 -0
  445. package/esm/util/stats.d.ts +23 -0
  446. package/esm/util/stats.js +72 -0
  447. package/esm/util/stopToken.d.ts +19 -0
  448. package/esm/util/stopToken.js +90 -0
  449. package/esm/util/tracks.d.ts +72 -0
  450. package/esm/util/tracks.js +214 -0
  451. package/esm/util/transferables.d.ts +2 -0
  452. package/esm/util/transferables.js +35 -0
  453. package/esm/util/tss-react/cssAndCx.d.ts +16 -0
  454. package/esm/util/tss-react/cssAndCx.js +97 -0
  455. package/esm/util/tss-react/index.d.ts +4 -0
  456. package/esm/util/tss-react/index.js +7 -0
  457. package/esm/util/tss-react/makeStyles.d.ts +15 -0
  458. package/esm/util/tss-react/makeStyles.js +38 -0
  459. package/esm/util/tss-react/mergeClasses.d.ts +2 -0
  460. package/esm/util/tss-react/mergeClasses.js +24 -0
  461. package/esm/util/tss-react/mui/index.d.ts +1 -0
  462. package/esm/util/tss-react/mui/index.js +1 -0
  463. package/esm/util/tss-react/mui/mui.d.ts +10 -0
  464. package/esm/util/tss-react/mui/mui.js +5 -0
  465. package/esm/util/tss-react/tools/classnames.d.ts +2 -0
  466. package/esm/util/tss-react/tools/classnames.js +44 -0
  467. package/esm/util/tss-react/tools/getDependencyArrayRef.d.ts +1 -0
  468. package/esm/util/tss-react/tools/getDependencyArrayRef.js +19 -0
  469. package/esm/util/tss-react/types.d.ts +13 -0
  470. package/esm/util/tss-react/types.js +6 -0
  471. package/esm/util/types/ElementId.d.ts +1 -0
  472. package/esm/util/types/ElementId.js +3 -0
  473. package/esm/util/types/index.d.ts +273 -0
  474. package/esm/util/types/index.js +131 -0
  475. package/esm/util/types/mst.d.ts +107 -0
  476. package/esm/util/types/mst.js +68 -0
  477. package/esm/util/types/util.d.ts +6 -0
  478. package/esm/util/types/util.js +1 -0
  479. package/esm/util/useFeatureSequence.d.ts +19 -0
  480. package/esm/util/useFeatureSequence.js +87 -0
  481. package/esm/util/useMeasure.js +30 -0
  482. package/esm/util/when.js +1 -0
  483. package/package.json +487 -39
  484. package/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +0 -38
  485. package/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +0 -13
  486. package/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +0 -48
  487. package/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +0 -8
  488. package/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +0 -13
  489. package/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +0 -2
  490. package/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +0 -23
  491. package/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +0 -2
  492. package/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +0 -13
  493. package/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +0 -23
  494. package/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +0 -2
  495. package/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +0 -30
  496. package/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +0 -63
  497. package/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +0 -11
  498. package/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +0 -48
  499. package/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +0 -27
  500. package/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +0 -2
  501. package/BaseFeatureWidget/BaseFeatureDetail/Position.js +0 -17
  502. package/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +0 -20
  503. package/BaseFeatureWidget/BaseFeatureDetail/UriField.js +0 -28
  504. package/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +0 -7
  505. package/BaseFeatureWidget/BaseFeatureDetail/index.js +0 -34
  506. package/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +0 -7
  507. package/BaseFeatureWidget/BaseFeatureDetail/types.js +0 -2
  508. package/BaseFeatureWidget/BaseFeatureDetail/util.js +0 -32
  509. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +0 -10
  510. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +0 -48
  511. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +0 -7
  512. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +0 -74
  513. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +0 -7
  514. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +0 -72
  515. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +0 -8
  516. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +0 -28
  517. package/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +0 -3
  518. package/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +0 -34
  519. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +0 -17
  520. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +0 -8
  521. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +0 -40
  522. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +0 -8
  523. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +0 -141
  524. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +0 -5
  525. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +0 -66
  526. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +0 -6
  527. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +0 -50
  528. package/BaseFeatureWidget/SequenceFeatureDetails/hooks.d.ts +0 -10
  529. package/BaseFeatureWidget/SequenceFeatureDetails/hooks.js +0 -65
  530. package/BaseFeatureWidget/SequenceFeatureDetails/index.d.ts +0 -1
  531. package/BaseFeatureWidget/SequenceFeatureDetails/index.js +0 -8
  532. package/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +0 -28
  533. package/BaseFeatureWidget/SequenceFeatureDetails/model.js +0 -81
  534. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +0 -16
  535. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +0 -88
  536. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +0 -8
  537. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +0 -20
  538. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +0 -10
  539. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +0 -56
  540. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +0 -9
  541. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +0 -25
  542. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +0 -10
  543. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +0 -25
  544. package/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
  545. package/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -585
  546. package/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
  547. package/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1118
  548. package/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +0 -8
  549. package/BaseFeatureWidget/SequenceFeatureDetails/types.js +0 -2
  550. package/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +0 -17
  551. package/BaseFeatureWidget/SequenceFeatureDetails/util.js +0 -49
  552. package/BaseFeatureWidget/configSchema.d.ts +0 -2
  553. package/BaseFeatureWidget/configSchema.js +0 -6
  554. package/BaseFeatureWidget/index.d.ts +0 -2
  555. package/BaseFeatureWidget/index.js +0 -7
  556. package/BaseFeatureWidget/stateModelFactory.d.ts +0 -101
  557. package/BaseFeatureWidget/stateModelFactory.js +0 -99
  558. package/BaseFeatureWidget/types.d.ts +0 -22
  559. package/BaseFeatureWidget/types.js +0 -2
  560. package/BaseFeatureWidget/util.d.ts +0 -48
  561. package/BaseFeatureWidget/util.js +0 -77
  562. package/CorePlugin.d.ts +0 -6
  563. package/CorePlugin.js +0 -66
  564. package/PhasedScheduler.js +0 -28
  565. package/Plugin.d.ts +0 -13
  566. package/Plugin.js +0 -7
  567. package/PluginLoader.d.ts +0 -64
  568. package/PluginLoader.js +0 -174
  569. package/PluginManager.d.ts +0 -139
  570. package/PluginManager.js +0 -405
  571. package/ReExports/BaseFeatureDetails.js +0 -45
  572. package/ReExports/DataGrid.js +0 -5
  573. package/ReExports/MuiDataGridReExports.js +0 -167
  574. package/ReExports/MuiReExports.d.ts +0 -133
  575. package/ReExports/MuiReExports.js +0 -150
  576. package/ReExports/index.d.ts +0 -1
  577. package/ReExports/index.js +0 -8
  578. package/ReExports/lazify.js +0 -14
  579. package/ReExports/list.js +0 -273
  580. package/ReExports/material-ui-colors.d.ts +0 -1
  581. package/ReExports/material-ui-colors.js +0 -17
  582. package/ReExports/modules.js +0 -179
  583. package/TextSearch/BaseResults.d.ts +0 -46
  584. package/TextSearch/BaseResults.js +0 -61
  585. package/TextSearch/TextSearchManager.d.ts +0 -48
  586. package/TextSearch/TextSearchManager.js +0 -85
  587. package/assemblyManager/assembly.d.ts +0 -71
  588. package/assemblyManager/assembly.js +0 -304
  589. package/assemblyManager/assemblyConfigSchema.d.ts +0 -27
  590. package/assemblyManager/assemblyConfigSchema.js +0 -53
  591. package/assemblyManager/assemblyManager.d.ts +0 -499
  592. package/assemblyManager/assemblyManager.js +0 -134
  593. package/assemblyManager/index.d.ts +0 -3
  594. package/assemblyManager/index.js +0 -10
  595. package/configuration/configurationSchema.d.ts +0 -35
  596. package/configuration/configurationSchema.js +0 -174
  597. package/configuration/configurationSlot.d.ts +0 -31
  598. package/configuration/configurationSlot.js +0 -241
  599. package/configuration/index.d.ts +0 -3
  600. package/configuration/index.js +0 -21
  601. package/configuration/types.d.ts +0 -14
  602. package/configuration/types.js +0 -2
  603. package/configuration/util.d.ts +0 -10
  604. package/configuration/util.js +0 -123
  605. package/data_adapters/BaseAdapter/BaseAdapter.d.ts +0 -14
  606. package/data_adapters/BaseAdapter/BaseAdapter.js +0 -30
  607. package/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +0 -24
  608. package/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +0 -115
  609. package/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -15
  610. package/data_adapters/BaseAdapter/BaseOptions.js +0 -2
  611. package/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +0 -10
  612. package/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.js +0 -2
  613. package/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +0 -10
  614. package/data_adapters/BaseAdapter/BaseSequenceAdapter.js +0 -10
  615. package/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +0 -6
  616. package/data_adapters/BaseAdapter/BaseTextSearchAdapter.js +0 -2
  617. package/data_adapters/BaseAdapter/RegionsAdapter.d.ts +0 -6
  618. package/data_adapters/BaseAdapter/RegionsAdapter.js +0 -2
  619. package/data_adapters/BaseAdapter/index.d.ts +0 -13
  620. package/data_adapters/BaseAdapter/index.js +0 -25
  621. package/data_adapters/BaseAdapter/types.d.ts +0 -21
  622. package/data_adapters/BaseAdapter/types.js +0 -2
  623. package/data_adapters/BaseAdapter/util.d.ts +0 -12
  624. package/data_adapters/BaseAdapter/util.js +0 -22
  625. package/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +0 -6
  626. package/data_adapters/CytobandAdapter/CytobandAdapter.js +0 -31
  627. package/data_adapters/CytobandAdapter/configSchema.d.ts +0 -9
  628. package/data_adapters/CytobandAdapter/configSchema.js +0 -26
  629. package/data_adapters/CytobandAdapter/index.d.ts +0 -2
  630. package/data_adapters/CytobandAdapter/index.js +0 -51
  631. package/data_adapters/dataAdapterCache.d.ts +0 -14
  632. package/data_adapters/dataAdapterCache.js +0 -60
  633. package/data_adapters/util.js +0 -10
  634. package/pluggableElementTypes/AdapterType.d.ts +0 -25
  635. package/pluggableElementTypes/AdapterType.js +0 -19
  636. package/pluggableElementTypes/AddTrackWorkflowType.d.ts +0 -17
  637. package/pluggableElementTypes/AddTrackWorkflowType.js +0 -14
  638. package/pluggableElementTypes/ConnectionType.d.ts +0 -20
  639. package/pluggableElementTypes/ConnectionType.js +0 -17
  640. package/pluggableElementTypes/DisplayType.d.ts +0 -28
  641. package/pluggableElementTypes/DisplayType.js +0 -18
  642. package/pluggableElementTypes/InternetAccountType.d.ts +0 -12
  643. package/pluggableElementTypes/InternetAccountType.js +0 -14
  644. package/pluggableElementTypes/PluggableElementBase.js +0 -12
  645. package/pluggableElementTypes/RpcMethodType.d.ts +0 -17
  646. package/pluggableElementTypes/RpcMethodType.js +0 -69
  647. package/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +0 -11
  648. package/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +0 -35
  649. package/pluggableElementTypes/TextSearchAdapterType.d.ts +0 -18
  650. package/pluggableElementTypes/TextSearchAdapterType.js +0 -18
  651. package/pluggableElementTypes/TrackType.d.ts +0 -16
  652. package/pluggableElementTypes/TrackType.js +0 -18
  653. package/pluggableElementTypes/ViewType.d.ts +0 -29
  654. package/pluggableElementTypes/ViewType.js +0 -21
  655. package/pluggableElementTypes/WidgetType.d.ts +0 -25
  656. package/pluggableElementTypes/WidgetType.js +0 -17
  657. package/pluggableElementTypes/index.d.ts +0 -26
  658. package/pluggableElementTypes/index.js +0 -44
  659. package/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +0 -29
  660. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +0 -38
  661. package/pluggableElementTypes/models/BaseDisplayModel.d.ts +0 -68
  662. package/pluggableElementTypes/models/BaseDisplayModel.js +0 -81
  663. package/pluggableElementTypes/models/BaseTrackModel.d.ts +0 -53
  664. package/pluggableElementTypes/models/BaseTrackModel.js +0 -145
  665. package/pluggableElementTypes/models/BaseViewModel.d.ts +0 -42
  666. package/pluggableElementTypes/models/BaseViewModel.js +0 -35
  667. package/pluggableElementTypes/models/InternetAccountModel.d.ts +0 -86
  668. package/pluggableElementTypes/models/InternetAccountModel.js +0 -155
  669. package/pluggableElementTypes/models/baseConnectionConfig.d.ts +0 -16
  670. package/pluggableElementTypes/models/baseConnectionConfig.js +0 -20
  671. package/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +0 -27
  672. package/pluggableElementTypes/models/baseInternetAccountConfig.js +0 -35
  673. package/pluggableElementTypes/models/baseTrackConfig.d.ts +0 -82
  674. package/pluggableElementTypes/models/baseTrackConfig.js +0 -135
  675. package/pluggableElementTypes/models/index.d.ts +0 -13
  676. package/pluggableElementTypes/models/index.js +0 -22
  677. package/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -60
  678. package/pluggableElementTypes/renderers/BoxRendererType.js +0 -102
  679. package/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -26
  680. package/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -34
  681. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.d.ts +0 -38
  682. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +0 -65
  683. package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -51
  684. package/pluggableElementTypes/renderers/FeatureRendererType.js +0 -85
  685. package/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -25
  686. package/pluggableElementTypes/renderers/LayoutSession.js +0 -42
  687. package/pluggableElementTypes/renderers/RendererType.d.ts +0 -25
  688. package/pluggableElementTypes/renderers/RendererType.js +0 -23
  689. package/pluggableElementTypes/renderers/RpcRenderedSvgGroup.d.ts +0 -9
  690. package/pluggableElementTypes/renderers/RpcRenderedSvgGroup.js +0 -9
  691. package/pluggableElementTypes/renderers/ServerSideRenderedContent.d.ts +0 -6
  692. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +0 -8
  693. package/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -49
  694. package/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -81
  695. package/pluggableElementTypes/renderers/index.d.ts +0 -7
  696. package/pluggableElementTypes/renderers/index.js +0 -20
  697. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +0 -32
  698. package/rpc/BaseRpcDriver.d.ts +0 -43
  699. package/rpc/BaseRpcDriver.js +0 -113
  700. package/rpc/MainThreadRpcDriver.d.ts +0 -14
  701. package/rpc/MainThreadRpcDriver.js +0 -32
  702. package/rpc/RpcManager.d.ts +0 -34
  703. package/rpc/RpcManager.js +0 -69
  704. package/rpc/WebWorkerRpcDriver.d.ts +0 -29
  705. package/rpc/WebWorkerRpcDriver.js +0 -65
  706. package/rpc/baseRpcConfig.d.ts +0 -8
  707. package/rpc/baseRpcConfig.js +0 -12
  708. package/rpc/configSchema.d.ts +0 -9
  709. package/rpc/configSchema.js +0 -27
  710. package/rpc/coreRpcMethods.d.ts +0 -9
  711. package/rpc/coreRpcMethods.js +0 -22
  712. package/rpc/mainThreadRpcConfig.d.ts +0 -8
  713. package/rpc/mainThreadRpcConfig.js +0 -13
  714. package/rpc/methods/CoreFreeResources.d.ts +0 -6
  715. package/rpc/methods/CoreFreeResources.js +0 -23
  716. package/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
  717. package/rpc/methods/CoreGetFeatureDensityStats.js +0 -36
  718. package/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
  719. package/rpc/methods/CoreGetFeatureDetails.js +0 -38
  720. package/rpc/methods/CoreGetFeatures.d.ts +0 -18
  721. package/rpc/methods/CoreGetFeatures.js +0 -40
  722. package/rpc/methods/CoreGetFileInfo.d.ts +0 -9
  723. package/rpc/methods/CoreGetFileInfo.js +0 -24
  724. package/rpc/methods/CoreGetMetadata.d.ts +0 -9
  725. package/rpc/methods/CoreGetMetadata.js +0 -24
  726. package/rpc/methods/CoreGetRefNames.d.ts +0 -9
  727. package/rpc/methods/CoreGetRefNames.js +0 -25
  728. package/rpc/methods/CoreRender.d.ts +0 -10
  729. package/rpc/methods/CoreRender.js +0 -46
  730. package/rpc/methods/util.d.ts +0 -15
  731. package/rpc/methods/util.js +0 -9
  732. package/rpc/webWorkerRpcConfig.d.ts +0 -8
  733. package/rpc/webWorkerRpcConfig.js +0 -13
  734. package/stories/JBrowseCore.stories.d.ts +0 -5
  735. package/stories/JBrowseCore.stories.js +0 -10
  736. package/stories/examples/WithSequencePanel.d.ts +0 -6
  737. package/stories/examples/WithSequencePanel.js +0 -42
  738. package/stories/examples/index.d.ts +0 -1
  739. package/stories/examples/index.js +0 -17
  740. package/stories/examples/util.d.ts +0 -33
  741. package/stories/examples/util.js +0 -235
  742. package/tsconfig.build.tsbuildinfo +0 -1
  743. package/ui/AppLogo.d.ts +0 -7
  744. package/ui/AppLogo.js +0 -12
  745. package/ui/AssemblySelector.d.ts +0 -13
  746. package/ui/AssemblySelector.js +0 -46
  747. package/ui/BaseTooltip.d.ts +0 -8
  748. package/ui/BaseTooltip.js +0 -46
  749. package/ui/CascadingMenu.d.ts +0 -9
  750. package/ui/CascadingMenu.js +0 -92
  751. package/ui/CascadingMenuButton.d.ts +0 -11
  752. package/ui/CascadingMenuButton.js +0 -29
  753. package/ui/ColorPicker.js +0 -101
  754. package/ui/DataGridFlexContainer.d.ts +0 -3
  755. package/ui/DataGridFlexContainer.js +0 -15
  756. package/ui/Dialog.d.ts +0 -7
  757. package/ui/Dialog.js +0 -50
  758. package/ui/DraggableDialog.js +0 -32
  759. package/ui/DropDownMenu.d.ts +0 -8
  760. package/ui/DropDownMenu.js +0 -37
  761. package/ui/EditableTypography.js +0 -72
  762. package/ui/ErrorBoundary.d.ts +0 -17
  763. package/ui/ErrorBoundary.js +0 -19
  764. package/ui/ErrorMessage.js +0 -94
  765. package/ui/ErrorMessageStackTraceDialog.js +0 -149
  766. package/ui/ExternalLink.js +0 -13
  767. package/ui/FactoryResetDialog.js +0 -24
  768. package/ui/FatalErrorDialog.js +0 -24
  769. package/ui/FileSelector/FileSelector.d.ts +0 -11
  770. package/ui/FileSelector/FileSelector.js +0 -102
  771. package/ui/FileSelector/LocalFileChooser.d.ts +0 -6
  772. package/ui/FileSelector/LocalFileChooser.js +0 -42
  773. package/ui/FileSelector/UrlChooser.d.ts +0 -8
  774. package/ui/FileSelector/UrlChooser.js +0 -19
  775. package/ui/FileSelector/index.d.ts +0 -1
  776. package/ui/FileSelector/index.js +0 -8
  777. package/ui/HoverMenu.js +0 -50
  778. package/ui/Icons.js +0 -23
  779. package/ui/LoadingEllipses.d.ts +0 -6
  780. package/ui/LoadingEllipses.js +0 -35
  781. package/ui/Logo.js +0 -46
  782. package/ui/Menu.d.ts +0 -53
  783. package/ui/Menu.js +0 -233
  784. package/ui/MenuButton.d.ts +0 -10
  785. package/ui/MenuButton.js +0 -28
  786. package/ui/PrerenderedCanvas.d.ts +0 -10
  787. package/ui/PrerenderedCanvas.js +0 -34
  788. package/ui/RedErrorMessageBox.js +0 -19
  789. package/ui/ResizeHandle.js +0 -72
  790. package/ui/ReturnToImportFormDialog.js +0 -18
  791. package/ui/SanitizedHTML.js +0 -64
  792. package/ui/Snackbar.d.ts +0 -10
  793. package/ui/Snackbar.js +0 -49
  794. package/ui/SnackbarContents.d.ts +0 -5
  795. package/ui/SnackbarContents.js +0 -16
  796. package/ui/SnackbarModel.d.ts +0 -17
  797. package/ui/SnackbarModel.js +0 -96
  798. package/ui/colors.js +0 -78
  799. package/ui/hooks.d.ts +0 -66
  800. package/ui/hooks.js +0 -185
  801. package/ui/index.d.ts +0 -19
  802. package/ui/index.js +0 -56
  803. package/ui/react-colorful.d.ts +0 -17
  804. package/ui/react-colorful.js +0 -466
  805. package/ui/theme.d.ts +0 -59
  806. package/ui/theme.js +0 -381
  807. package/ui/useEvent.js +0 -47
  808. package/util/Base1DUtils.d.ts +0 -38
  809. package/util/Base1DUtils.js +0 -198
  810. package/util/Base1DViewModel.d.ts +0 -61
  811. package/util/Base1DViewModel.js +0 -135
  812. package/util/QuickLRU.d.ts +0 -32
  813. package/util/QuickLRU.js +0 -237
  814. package/util/TimeTraveller.d.ts +0 -19
  815. package/util/TimeTraveller.js +0 -90
  816. package/util/aborting.js +0 -48
  817. package/util/analytics.js +0 -86
  818. package/util/blobToDataURL.js +0 -17
  819. package/util/blockTypes.d.ts +0 -58
  820. package/util/blockTypes.js +0 -110
  821. package/util/calculateDynamicBlocks.d.ts +0 -3
  822. package/util/calculateDynamicBlocks.js +0 -100
  823. package/util/calculateStaticBlocks.d.ts +0 -13
  824. package/util/calculateStaticBlocks.js +0 -102
  825. package/util/cluster.d.ts +0 -17
  826. package/util/cluster.js +0 -96
  827. package/util/color/cssColorsLevel4.js +0 -160
  828. package/util/color/index.d.ts +0 -4
  829. package/util/color/index.js +0 -40
  830. package/util/colord.d.ts +0 -1
  831. package/util/colord.js +0 -13
  832. package/util/compositeMap.d.ts +0 -11
  833. package/util/compositeMap.js +0 -61
  834. package/util/dedupe.js +0 -15
  835. package/util/formatFastaStrings.js +0 -12
  836. package/util/idMaker.js +0 -24
  837. package/util/index.d.ts +0 -274
  838. package/util/index.js +0 -1052
  839. package/util/io/RemoteFileWithRangeCache.js +0 -76
  840. package/util/io/index.d.ts +0 -7
  841. package/util/io/index.js +0 -103
  842. package/util/jexl.d.ts +0 -4
  843. package/util/jexl.js +0 -54
  844. package/util/jexlStrings.js +0 -23
  845. package/util/layouts/BaseLayout.d.ts +0 -30
  846. package/util/layouts/BaseLayout.js +0 -2
  847. package/util/layouts/GranularRectLayout.d.ts +0 -37
  848. package/util/layouts/GranularRectLayout.js +0 -343
  849. package/util/layouts/MultiLayout.d.ts +0 -12
  850. package/util/layouts/MultiLayout.js +0 -42
  851. package/util/layouts/PrecomputedLayout.d.ts +0 -28
  852. package/util/layouts/PrecomputedLayout.js +0 -66
  853. package/util/layouts/PrecomputedMultiLayout.d.ts +0 -4
  854. package/util/layouts/PrecomputedMultiLayout.js +0 -21
  855. package/util/layouts/SceneGraph.js +0 -115
  856. package/util/layouts/index.d.ts +0 -7
  857. package/util/layouts/index.js +0 -31
  858. package/util/makeAbortableReaction.d.ts +0 -2
  859. package/util/makeAbortableReaction.js +0 -50
  860. package/util/map-obj.d.ts +0 -3
  861. package/util/map-obj.js +0 -37
  862. package/util/mst-reflection.d.ts +0 -11
  863. package/util/mst-reflection.js +0 -62
  864. package/util/nanoid.d.ts +0 -5
  865. package/util/nanoid.js +0 -43
  866. package/util/nextTick.js +0 -6
  867. package/util/offscreenCanvasPonyfill.d.ts +0 -7
  868. package/util/offscreenCanvasPonyfill.js +0 -65
  869. package/util/offscreenCanvasUtils.d.ts +0 -28
  870. package/util/offscreenCanvasUtils.js +0 -99
  871. package/util/parseLineByLine.js +0 -25
  872. package/util/range.js +0 -26
  873. package/util/rxjs.d.ts +0 -3
  874. package/util/rxjs.js +0 -21
  875. package/util/simpleFeature.d.ts +0 -44
  876. package/util/simpleFeature.js +0 -82
  877. package/util/stats.d.ts +0 -21
  878. package/util/stats.js +0 -78
  879. package/util/stopToken.d.ts +0 -3
  880. package/util/stopToken.js +0 -29
  881. package/util/tracks.d.ts +0 -55
  882. package/util/tracks.js +0 -168
  883. package/util/types/index.d.ts +0 -254
  884. package/util/types/index.js +0 -172
  885. package/util/types/mst.d.ts +0 -107
  886. package/util/types/mst.js +0 -72
  887. package/util/types/util.d.ts +0 -6
  888. package/util/types/util.js +0 -2
  889. package/util/useMeasure.js +0 -33
  890. package/util/when.js +0 -5
  891. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/ArrayValue.d.ts +0 -0
  892. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/BasicValue.d.ts +0 -0
  893. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/DataGridDetails.d.ts +0 -0
  894. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/FieldName.d.ts +0 -0
  895. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/SimpleField.d.ts +0 -0
  896. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/UriField.d.ts +0 -0
  897. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/util.d.ts +0 -0
  898. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +0 -0
  899. /package/{PhasedScheduler.d.ts → esm/PhasedScheduler.d.ts} +0 -0
  900. /package/{ReExports → esm/ReExports}/BaseFeatureDetails.d.ts +0 -0
  901. /package/{ReExports → esm/ReExports}/DataGrid.d.ts +0 -0
  902. /package/{ReExports → esm/ReExports}/MuiDataGridReExports.d.ts +0 -0
  903. /package/{ReExports → esm/ReExports}/lazify.d.ts +0 -0
  904. /package/{ReExports → esm/ReExports}/list.d.ts +0 -0
  905. /package/{ReExports → esm/ReExports}/modules.d.ts +0 -0
  906. /package/{data_adapters → esm/data_adapters}/util.d.ts +0 -0
  907. /package/{pluggableElementTypes → esm/pluggableElementTypes}/PluggableElementBase.d.ts +0 -0
  908. /package/{pluggableElementTypes → esm/pluggableElementTypes}/renderers/util/serializableFilterChain.d.ts +0 -0
  909. /package/{ui → esm/ui}/ColorPicker.d.ts +0 -0
  910. /package/{ui → esm/ui}/DraggableDialog.d.ts +0 -0
  911. /package/{ui → esm/ui}/EditableTypography.d.ts +0 -0
  912. /package/{ui → esm/ui}/ErrorMessage.d.ts +0 -0
  913. /package/{ui → esm/ui}/ErrorMessageStackTraceDialog.d.ts +0 -0
  914. /package/{ui → esm/ui}/ExternalLink.d.ts +0 -0
  915. /package/{ui → esm/ui}/FactoryResetDialog.d.ts +0 -0
  916. /package/{ui → esm/ui}/FatalErrorDialog.d.ts +0 -0
  917. /package/{ui → esm/ui}/HoverMenu.d.ts +0 -0
  918. /package/{ui → esm/ui}/Icons.d.ts +0 -0
  919. /package/{ui → esm/ui}/Logo.d.ts +0 -0
  920. /package/{ui → esm/ui}/RedErrorMessageBox.d.ts +0 -0
  921. /package/{ui → esm/ui}/ResizeHandle.d.ts +0 -0
  922. /package/{ui → esm/ui}/ReturnToImportFormDialog.d.ts +0 -0
  923. /package/{ui → esm/ui}/SanitizedHTML.d.ts +0 -0
  924. /package/{ui → esm/ui}/colors.d.ts +0 -0
  925. /package/{ui → esm/ui}/useEvent.d.ts +0 -0
  926. /package/{util → esm/util}/aborting.d.ts +0 -0
  927. /package/{util → esm/util}/analytics.d.ts +0 -0
  928. /package/{util → esm/util}/blobToDataURL.d.ts +0 -0
  929. /package/{util → esm/util}/color/cssColorsLevel4.d.ts +0 -0
  930. /package/{util → esm/util}/dedupe.d.ts +0 -0
  931. /package/{util → esm/util}/formatFastaStrings.d.ts +0 -0
  932. /package/{util → esm/util}/idMaker.d.ts +0 -0
  933. /package/{util → esm/util}/io/RemoteFileWithRangeCache.d.ts +0 -0
  934. /package/{util → esm/util}/jexlStrings.d.ts +0 -0
  935. /package/{util → esm/util}/layouts/SceneGraph.d.ts +0 -0
  936. /package/{util → esm/util}/nextTick.d.ts +0 -0
  937. /package/{util → esm/util}/parseLineByLine.d.ts +0 -0
  938. /package/{util → esm/util}/range.d.ts +0 -0
  939. /package/{util → esm/util}/useMeasure.d.ts +0 -0
  940. /package/{util → esm/util}/when.d.ts +0 -0
@@ -1,17 +0,0 @@
1
- "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __exportStar = (this && this.__exportStar) || function(m, exports) {
14
- for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
15
- };
16
- Object.defineProperty(exports, "__esModule", { value: true });
17
- __exportStar(require("@mui/material/colors"), exports);
@@ -1,179 +0,0 @@
1
- "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || (function () {
19
- var ownKeys = function(o) {
20
- ownKeys = Object.getOwnPropertyNames || function (o) {
21
- var ar = [];
22
- for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
- return ar;
24
- };
25
- return ownKeys(o);
26
- };
27
- return function (mod) {
28
- if (mod && mod.__esModule) return mod;
29
- var result = {};
30
- if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
- __setModuleDefault(result, mod);
32
- return result;
33
- };
34
- })();
35
- var __importDefault = (this && this.__importDefault) || function (mod) {
36
- return (mod && mod.__esModule) ? mod : { "default": mod };
37
- };
38
- Object.defineProperty(exports, "__esModule", { value: true });
39
- const React = __importStar(require("react"));
40
- const material_1 = require("@mui/material");
41
- const MUIStyles = __importStar(require("@mui/material/styles"));
42
- const MUIUtils = __importStar(require("@mui/material/utils"));
43
- const x_data_grid_1 = require("@mui/x-data-grid");
44
- const mobx = __importStar(require("mobx"));
45
- const mxreact = __importStar(require("mobx-react"));
46
- const mst = __importStar(require("mobx-state-tree"));
47
- const ReactJSXRuntime = __importStar(require("react/jsx-runtime"));
48
- const ReactDom = __importStar(require("react-dom"));
49
- const ReactDomClient = __importStar(require("react-dom/client"));
50
- const mui_1 = require("tss-react/mui");
51
- const Plugin_1 = __importDefault(require("../Plugin"));
52
- const Configuration = __importStar(require("../configuration"));
53
- const BaseAdapterExports = __importStar(require("../data_adapters/BaseAdapter"));
54
- const pluggableElementTypes = __importStar(require("../pluggableElementTypes"));
55
- const BaseFeatureDetails_1 = require("./BaseFeatureDetails");
56
- const MuiDataGridReExports_1 = require("./MuiDataGridReExports");
57
- const MuiReExports_1 = require("./MuiReExports");
58
- const lazify_1 = require("./lazify");
59
- const list_1 = __importDefault(require("./list"));
60
- const AdapterType_1 = __importDefault(require("../pluggableElementTypes/AdapterType"));
61
- const DisplayType_1 = __importDefault(require("../pluggableElementTypes/DisplayType"));
62
- const TrackType_1 = __importDefault(require("../pluggableElementTypes/TrackType"));
63
- const ViewType_1 = __importDefault(require("../pluggableElementTypes/ViewType"));
64
- const WidgetType_1 = __importDefault(require("../pluggableElementTypes/WidgetType"));
65
- const pluggableElementTypeModels = __importStar(require("../pluggableElementTypes/models"));
66
- const BoxRendererType = __importStar(require("../pluggableElementTypes/renderers/BoxRendererType"));
67
- const CircularChordRendererType_1 = __importDefault(require("../pluggableElementTypes/renderers/CircularChordRendererType"));
68
- const FeatureRendererType = __importStar(require("../pluggableElementTypes/renderers/FeatureRendererType"));
69
- const RendererType = __importStar(require("../pluggableElementTypes/renderers/RendererType"));
70
- const ServerSideRendererType = __importStar(require("../pluggableElementTypes/renderers/ServerSideRendererType"));
71
- const coreUi = __importStar(require("../ui"));
72
- const coreTheme = __importStar(require("../ui/theme"));
73
- const coreUtil = __importStar(require("../util"));
74
- const Base1DViewModel_1 = __importDefault(require("../util/Base1DViewModel"));
75
- const coreColor = __importStar(require("../util/color"));
76
- const coreIo = __importStar(require("../util/io"));
77
- const coreLayouts = __importStar(require("../util/layouts"));
78
- const coreMstReflection = __importStar(require("../util/mst-reflection"));
79
- const rxjs = __importStar(require("../util/rxjs"));
80
- const trackUtils = __importStar(require("../util/tracks"));
81
- const mstTypes = __importStar(require("../util/types/mst"));
82
- const libs = {
83
- mobx,
84
- 'mobx-state-tree': mst,
85
- react: React,
86
- 'react/jsx-runtime': ReactJSXRuntime,
87
- 'react-dom': ReactDom,
88
- 'react-dom/client': ReactDomClient,
89
- 'mobx-react': mxreact,
90
- '@mui/x-data-grid': {
91
- useGridApiContext: x_data_grid_1.useGridApiContext,
92
- useGridApiRef: x_data_grid_1.useGridApiRef,
93
- useGridRootProps: x_data_grid_1.useGridRootProps,
94
- ...(0, lazify_1.lazyMap)(MuiDataGridReExports_1.DataGridEntries),
95
- },
96
- '@mui/material/utils': MUIUtils,
97
- '@material-ui/core/utils': MUIUtils,
98
- 'tss-react/mui': {
99
- makeStyles: mui_1.makeStyles,
100
- },
101
- '@material-ui/core': {
102
- ...(0, lazify_1.lazyMap)(MuiReExports_1.Entries),
103
- useTheme: material_1.useTheme,
104
- alpha: material_1.alpha,
105
- makeStyles: (args) => {
106
- const useStyles = (0, mui_1.makeStyles)()(args);
107
- return () => useStyles().classes;
108
- },
109
- },
110
- '@mui/material': {
111
- ...(0, lazify_1.lazyMap)(MuiReExports_1.Entries),
112
- alpha: material_1.alpha,
113
- useTheme: material_1.useTheme,
114
- createTheme: material_1.createTheme,
115
- },
116
- ...(0, lazify_1.lazyMap)(MuiReExports_1.Entries, '@mui/material/'),
117
- ...(0, lazify_1.lazyMap)(MuiReExports_1.Entries, '@material-ui/core/'),
118
- '@mui/material/styles': {
119
- ...MUIStyles,
120
- makeStyles: (args) => {
121
- const useStyles = (0, mui_1.makeStyles)()(args);
122
- return () => useStyles().classes;
123
- },
124
- },
125
- '@material-ui/core/styles': {
126
- ...MUIStyles,
127
- makeStyles: (args) => {
128
- const useStyles = (0, mui_1.makeStyles)()(args);
129
- return () => useStyles().classes;
130
- },
131
- },
132
- '@material-ui/lab/ToggleButton': MuiReExports_1.Entries.ToggleButton,
133
- '@material-ui/lab/ToggleButtonGroup': MuiReExports_1.Entries.ToggleButtonGroup,
134
- '@material-ui/lab/Autocomplete': MuiReExports_1.Entries.Autocomplete,
135
- '@material-ui/lab/Alert': MuiReExports_1.Entries.Alert,
136
- '@material-ui/lab': {
137
- Alert: MuiReExports_1.Entries.Alert,
138
- Autocomplete: MuiReExports_1.Entries.Autocomplete,
139
- ToggleButton: MuiReExports_1.Entries.ToggleButton,
140
- ToggleButtonGroup: MuiReExports_1.Entries.ToggleButtonGroup,
141
- },
142
- '@jbrowse/core/Plugin': Plugin_1.default,
143
- '@jbrowse/core/pluggableElementTypes/renderers/RendererType': RendererType,
144
- '@jbrowse/core/configuration': Configuration,
145
- '@jbrowse/core/util/types/mst': mstTypes,
146
- '@jbrowse/core/ui': coreUi,
147
- '@jbrowse/core/ui/theme': coreTheme,
148
- '@jbrowse/core/util': coreUtil,
149
- '@jbrowse/core/util/color': coreColor,
150
- '@jbrowse/core/util/layouts': coreLayouts,
151
- '@jbrowse/core/util/tracks': trackUtils,
152
- '@jbrowse/core/util/Base1DViewModel': Base1DViewModel_1.default,
153
- '@jbrowse/core/util/io': coreIo,
154
- '@jbrowse/core/util/mst-reflection': coreMstReflection,
155
- '@jbrowse/core/util/rxjs': rxjs,
156
- '@jbrowse/core/pluggableElementTypes': pluggableElementTypes,
157
- '@jbrowse/core/pluggableElementTypes/ViewType': ViewType_1.default,
158
- '@jbrowse/core/pluggableElementTypes/AdapterType': AdapterType_1.default,
159
- '@jbrowse/core/pluggableElementTypes/DisplayType': DisplayType_1.default,
160
- '@jbrowse/core/pluggableElementTypes/TrackType': TrackType_1.default,
161
- '@jbrowse/core/pluggableElementTypes/WidgetType': WidgetType_1.default,
162
- '@jbrowse/core/pluggableElementTypes/models': pluggableElementTypeModels,
163
- '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType': ServerSideRendererType,
164
- '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType': CircularChordRendererType_1.default,
165
- '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType': BoxRendererType,
166
- '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType': FeatureRendererType,
167
- '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail': BaseFeatureDetails_1.BaseFeatureDetail,
168
- '@jbrowse/core/data_adapters/BaseAdapter': BaseAdapterExports,
169
- };
170
- const libsList = Object.keys(libs);
171
- const inLibsOnly = libsList.filter(mod => !list_1.default.includes(mod));
172
- if (inLibsOnly.length > 0) {
173
- throw new Error(`The following modules are in the modules libs, but not the re-exports list: ${inLibsOnly.join(', ')}`);
174
- }
175
- const inReExportsOnly = list_1.default.filter(mod => !libsList.includes(mod));
176
- if (inReExportsOnly.length) {
177
- throw new Error(`The following modules are in the re-exports list, but not the modules libs: ${inReExportsOnly.join(', ')}`);
178
- }
179
- exports.default = libs;
@@ -1,46 +0,0 @@
1
- import type React from 'react';
2
- import type { SearchType } from '../data_adapters/BaseAdapter';
3
- import type TextSearchAdapterType from '../pluggableElementTypes/TextSearchAdapterType';
4
- export interface BaseResultArgs {
5
- label: string;
6
- displayString?: string;
7
- renderingComponent?: React.ReactElement;
8
- matchedAttribute?: string;
9
- matchedObject?: object;
10
- textSearchAdapter?: TextSearchAdapterType;
11
- relevance?: SearchType;
12
- locString?: string;
13
- refName?: string;
14
- trackId?: string;
15
- score?: number;
16
- results?: BaseResult[];
17
- }
18
- export default class BaseResult {
19
- label: string;
20
- renderingComponent?: React.ReactElement;
21
- displayString?: string;
22
- matchedAttribute?: string;
23
- matchedObject?: object;
24
- textSearchAdapter?: TextSearchAdapterType;
25
- relevance?: SearchType;
26
- trackId?: string;
27
- score: number;
28
- locString?: string;
29
- results?: BaseResult[];
30
- constructor(args: BaseResultArgs);
31
- getLabel(): string;
32
- getDisplayString(): string;
33
- getRenderingComponent(): React.ReactElement<unknown, string | React.JSXElementConstructor<any>> | undefined;
34
- getTrackId(): string | undefined;
35
- getScore(): number;
36
- updateScore(newScore: number): number;
37
- getId(): string;
38
- hasLocation(): boolean;
39
- getLocation(): string | undefined;
40
- getComboResults(): BaseResult[] | undefined;
41
- }
42
- export declare class RefSequenceResult extends BaseResult {
43
- refName: string;
44
- constructor(args: BaseResultArgs);
45
- getLocation(): string;
46
- }
@@ -1,61 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.RefSequenceResult = void 0;
4
- class BaseResult {
5
- constructor(args) {
6
- this.label = args.label;
7
- this.locString = args.locString;
8
- this.renderingComponent = args.renderingComponent;
9
- this.displayString = args.displayString;
10
- this.matchedAttribute = args.matchedAttribute;
11
- this.matchedObject = args.matchedObject;
12
- this.textSearchAdapter = args.textSearchAdapter;
13
- this.relevance = args.relevance;
14
- this.trackId = args.trackId;
15
- this.score = args.score || 1;
16
- this.results = args.results || [];
17
- }
18
- getLabel() {
19
- return this.label;
20
- }
21
- getDisplayString() {
22
- return this.displayString || this.label;
23
- }
24
- getRenderingComponent() {
25
- return this.renderingComponent;
26
- }
27
- getTrackId() {
28
- return this.trackId;
29
- }
30
- getScore() {
31
- return this.score;
32
- }
33
- updateScore(newScore) {
34
- this.score = newScore;
35
- return this.score;
36
- }
37
- getId() {
38
- return `${this.getLabel()}-${this.getLocation()}-${this.getTrackId()}`;
39
- }
40
- hasLocation() {
41
- return !!this.locString;
42
- }
43
- getLocation() {
44
- return this.locString;
45
- }
46
- getComboResults() {
47
- return this.results;
48
- }
49
- }
50
- exports.default = BaseResult;
51
- class RefSequenceResult extends BaseResult {
52
- constructor(args) {
53
- var _a;
54
- super(args);
55
- this.refName = (_a = args.refName) !== null && _a !== void 0 ? _a : '';
56
- }
57
- getLocation() {
58
- return this.refName;
59
- }
60
- }
61
- exports.RefSequenceResult = RefSequenceResult;
@@ -1,48 +0,0 @@
1
- import QuickLRU from '../util/QuickLRU';
2
- import type BaseResult from './BaseResults';
3
- import type PluginManager from '../PluginManager';
4
- import type { AnyConfigurationModel } from '../configuration';
5
- import type { BaseTextSearchAdapter, BaseTextSearchArgs } from '../data_adapters/BaseAdapter';
6
- export interface SearchScope {
7
- includeAggregateIndexes: boolean;
8
- assemblyName: string;
9
- tracks?: string[];
10
- }
11
- export default class TextSearchManager {
12
- pluginManager: PluginManager;
13
- adapterCache: QuickLRU<string, BaseTextSearchAdapter>;
14
- constructor(pluginManager: PluginManager);
15
- loadTextSearchAdapters(searchScope: SearchScope): Promise<BaseTextSearchAdapter[]>;
16
- relevantAdapters(searchScope: SearchScope): ({
17
- [x: string]: any;
18
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
19
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
20
- [x: string]: any;
21
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("../configuration").AnyConfigurationSchemaType>);
22
- } & import("mobx-state-tree").IStateTreeNode<import("../configuration").AnyConfigurationSchemaType>)[];
23
- getAdaptersWithAssembly(assemblyName: string, confs: AnyConfigurationModel[]): ({
24
- [x: string]: any;
25
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
26
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
27
- [x: string]: any;
28
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("../configuration").AnyConfigurationSchemaType>);
29
- } & import("mobx-state-tree").IStateTreeNode<import("../configuration").AnyConfigurationSchemaType>)[];
30
- getTrackAdaptersWithAssembly(assemblyName: string, confs: AnyConfigurationModel[]): ({
31
- [x: string]: any;
32
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
33
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
34
- [x: string]: any;
35
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("../configuration").AnyConfigurationSchemaType>);
36
- } & import("mobx-state-tree").IStateTreeNode<import("../configuration").AnyConfigurationSchemaType>)[];
37
- search(args: BaseTextSearchArgs, searchScope: SearchScope, rankFn: (results: BaseResult[]) => BaseResult[]): Promise<BaseResult[]>;
38
- search2({ args, searchScope, rankFn, }: {
39
- args: BaseTextSearchArgs;
40
- searchScope: SearchScope;
41
- rankFn: (results: BaseResult[]) => BaseResult[];
42
- }): Promise<BaseResult[]>;
43
- sortResults2({ results, rankFn, args, }: {
44
- results: BaseResult[];
45
- args: BaseTextSearchArgs;
46
- rankFn: (results: BaseResult[]) => BaseResult[];
47
- }): BaseResult[];
48
- }
@@ -1,85 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- const ufuzzy_1 = __importDefault(require("@leeoniya/ufuzzy"));
7
- const configuration_1 = require("../configuration");
8
- const QuickLRU_1 = __importDefault(require("../util/QuickLRU"));
9
- class TextSearchManager {
10
- constructor(pluginManager) {
11
- this.pluginManager = pluginManager;
12
- this.adapterCache = new QuickLRU_1.default({
13
- maxSize: 15,
14
- });
15
- }
16
- loadTextSearchAdapters(searchScope) {
17
- return Promise.all(this.relevantAdapters(searchScope).map(async (conf) => {
18
- const adapterId = (0, configuration_1.readConfObject)(conf, 'textSearchAdapterId');
19
- const r = this.adapterCache.get(adapterId);
20
- if (r) {
21
- return r;
22
- }
23
- else {
24
- const adapterType = this.pluginManager.getTextSearchAdapterType(conf.type);
25
- const AdapterClass = await adapterType.getAdapterClass();
26
- const adapterInstance = new AdapterClass(conf, undefined, this.pluginManager);
27
- this.adapterCache.set(adapterId, adapterInstance);
28
- return adapterInstance;
29
- }
30
- }));
31
- }
32
- relevantAdapters(searchScope) {
33
- const rootModel = this.pluginManager.rootModel;
34
- const { aggregateTextSearchAdapters } = rootModel === null || rootModel === void 0 ? void 0 : rootModel.jbrowse;
35
- const { tracks } = rootModel === null || rootModel === void 0 ? void 0 : rootModel.session;
36
- const { assemblyName } = searchScope;
37
- return [
38
- ...this.getAdaptersWithAssembly(assemblyName, aggregateTextSearchAdapters),
39
- ...this.getTrackAdaptersWithAssembly(assemblyName, tracks),
40
- ];
41
- }
42
- getAdaptersWithAssembly(assemblyName, confs) {
43
- return confs.filter(c => { var _a; return (_a = (0, configuration_1.readConfObject)(c, 'assemblyNames')) === null || _a === void 0 ? void 0 : _a.includes(assemblyName); });
44
- }
45
- getTrackAdaptersWithAssembly(assemblyName, confs) {
46
- return confs
47
- .filter(conf => {
48
- var _a;
49
- return (_a = (0, configuration_1.readConfObject)(conf, [
50
- 'textSearching',
51
- 'textSearchAdapter',
52
- 'assemblyNames',
53
- ])) === null || _a === void 0 ? void 0 : _a.includes(assemblyName);
54
- })
55
- .map(conf => conf.textSearching.textSearchAdapter);
56
- }
57
- async search(args, searchScope, rankFn) {
58
- return this.search2({ args, searchScope, rankFn });
59
- }
60
- async search2({ args, searchScope, rankFn, }) {
61
- const adapters = await this.loadTextSearchAdapters(searchScope);
62
- const results = await Promise.all(adapters.map(a => a.searchIndex(args)));
63
- return this.sortResults2({
64
- args,
65
- results: results.flat(),
66
- rankFn,
67
- });
68
- }
69
- sortResults2({ results, rankFn, args, }) {
70
- const uf = new ufuzzy_1.default({});
71
- const haystack = results.map(r => r.getDisplayString());
72
- const needle = args.queryString;
73
- const idxs = uf.filter(haystack, needle);
74
- const res = [];
75
- if (idxs != null && idxs.length > 0) {
76
- const info = uf.info(idxs, haystack, needle);
77
- const order = uf.sort(info, haystack, needle);
78
- for (const element of order) {
79
- res.push(results[info.idx[element]]);
80
- }
81
- }
82
- return rankFn(res);
83
- }
84
- }
85
- exports.default = TextSearchManager;
@@ -1,71 +0,0 @@
1
- import type PluginManager from '../PluginManager';
2
- import type { BaseOptions } from '../data_adapters/BaseAdapter';
3
- import type RpcManager from '../rpc/RpcManager';
4
- import type { Feature, Region } from '../util';
5
- import type { IAnyType, Instance } from 'mobx-state-tree';
6
- type AdapterConf = Record<string, unknown>;
7
- type RefNameAliases = Record<string, string>;
8
- export interface RefNameMap {
9
- forwardMap: RefNameAliases;
10
- reverseMap: RefNameAliases;
11
- }
12
- export interface BasicRegion {
13
- start: number;
14
- end: number;
15
- refName: string;
16
- assemblyName: string;
17
- }
18
- export default function assemblyFactory(assemblyConfigType: IAnyType, pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
19
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
20
- }, {
21
- error: unknown;
22
- loadingP: Promise<void> | undefined;
23
- volatileRegions: BasicRegion[] | undefined;
24
- refNameAliases: RefNameAliases | undefined;
25
- cytobands: Feature[] | undefined;
26
- } & {
27
- getConf(arg: string): any;
28
- readonly lowerCaseRefNameAliases: {
29
- [k: string]: string;
30
- } | undefined;
31
- } & {
32
- readonly initialized: boolean;
33
- readonly name: string;
34
- readonly regions: BasicRegion[] | undefined;
35
- readonly aliases: string[];
36
- readonly displayName: string;
37
- hasName(name: string): boolean;
38
- readonly allAliases: string[];
39
- readonly allRefNames: string[] | undefined;
40
- readonly lowerCaseRefNames: string[] | undefined;
41
- readonly allRefNamesWithLowerCase: string[] | undefined;
42
- readonly rpcManager: RpcManager;
43
- readonly refNameColors: string[];
44
- } & {
45
- readonly refNames: string[] | undefined;
46
- } & {
47
- getCanonicalRefName(refName: string): string | undefined;
48
- getRefNameColor(refName: string): string | undefined;
49
- isValidRefName(refName: string): boolean;
50
- } & {
51
- setLoaded({ regions, refNameAliases, cytobands, }: {
52
- regions: Region[];
53
- refNameAliases: RefNameAliases;
54
- cytobands: Feature[];
55
- }): void;
56
- setError(e: unknown): void;
57
- setRegions(regions: Region[]): void;
58
- setRefNameAliases(aliases: RefNameAliases): void;
59
- setCytobands(cytobands: Feature[]): void;
60
- setLoadingP(p?: Promise<void>): void;
61
- load(): Promise<void>;
62
- loadPre(): Promise<void>;
63
- } & {
64
- getAdapterMapEntry(adapterConf: AdapterConf, options: BaseOptions): Promise<RefNameMap>;
65
- getRefNameMapForAdapter(adapterConf: AdapterConf, opts: BaseOptions): Promise<RefNameAliases>;
66
- getReverseRefNameMapForAdapter(adapterConf: AdapterConf, opts: BaseOptions): Promise<RefNameAliases>;
67
- afterCreate(): void;
68
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
69
- export type AssemblyModel = ReturnType<typeof assemblyFactory>;
70
- export type Assembly = Instance<AssemblyModel>;
71
- export {};