@jbrowse/core 3.6.5 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (940) hide show
  1. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +32 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +13 -0
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +43 -0
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +8 -0
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +7 -0
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +2 -0
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +17 -0
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +2 -0
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +7 -0
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +20 -0
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +2 -0
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +24 -0
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +57 -0
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +11 -0
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +42 -0
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +24 -0
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +2 -0
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +14 -0
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +14 -0
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +22 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +24 -0
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +7 -0
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.js +1 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +26 -0
  26. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +10 -0
  27. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +41 -0
  28. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +7 -0
  29. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +44 -0
  30. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +7 -0
  31. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +34 -0
  32. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +8 -0
  33. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +26 -0
  34. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +3 -0
  35. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +29 -0
  36. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +6 -0
  37. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +6 -0
  38. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +11 -0
  39. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +8 -0
  40. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +40 -0
  41. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +8 -0
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +105 -0
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +5 -0
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +64 -0
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +6 -0
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +48 -0
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.d.ts +1 -0
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -0
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +31 -0
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +83 -0
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +16 -0
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +83 -0
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +8 -0
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +16 -0
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +10 -0
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +52 -0
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +9 -0
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +21 -0
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +10 -0
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +22 -0
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +80 -0
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +583 -0
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +141 -0
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +1116 -0
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -0
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.js +1 -0
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +13 -0
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +73 -0
  69. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +10 -0
  70. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +42 -0
  71. package/esm/BaseFeatureWidget/configSchema.d.ts +2 -0
  72. package/esm/BaseFeatureWidget/configSchema.js +3 -0
  73. package/esm/BaseFeatureWidget/index.d.ts +2 -0
  74. package/esm/BaseFeatureWidget/index.js +2 -0
  75. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +101 -0
  76. package/esm/BaseFeatureWidget/stateModelFactory.js +96 -0
  77. package/esm/BaseFeatureWidget/types.d.ts +22 -0
  78. package/esm/BaseFeatureWidget/types.js +1 -0
  79. package/esm/BaseFeatureWidget/util.d.ts +51 -0
  80. package/esm/BaseFeatureWidget/util.js +95 -0
  81. package/esm/CorePlugin.d.ts +6 -0
  82. package/esm/CorePlugin.js +24 -0
  83. package/esm/PhasedScheduler.js +25 -0
  84. package/esm/Plugin.d.ts +13 -0
  85. package/esm/Plugin.js +9 -0
  86. package/esm/PluginLoader.d.ts +64 -0
  87. package/esm/PluginLoader.js +164 -0
  88. package/esm/PluginManager.d.ts +125 -0
  89. package/esm/PluginManager.js +414 -0
  90. package/esm/ReExports/BaseFeatureDetails.js +9 -0
  91. package/esm/ReExports/DataGrid.js +1 -0
  92. package/esm/ReExports/MuiDataGridReExports.js +131 -0
  93. package/esm/ReExports/MuiReExports.d.ts +134 -0
  94. package/esm/ReExports/MuiReExports.js +115 -0
  95. package/esm/ReExports/index.d.ts +1 -0
  96. package/esm/ReExports/index.js +1 -0
  97. package/esm/ReExports/lazify.js +10 -0
  98. package/esm/ReExports/list.js +275 -0
  99. package/esm/ReExports/modules.js +149 -0
  100. package/esm/TextSearch/BaseResults.d.ts +46 -0
  101. package/esm/TextSearch/BaseResults.js +67 -0
  102. package/esm/TextSearch/TextSearchManager.d.ts +48 -0
  103. package/esm/TextSearch/TextSearchManager.js +77 -0
  104. package/esm/assemblyManager/assembly.d.ts +75 -0
  105. package/esm/assemblyManager/assembly.js +328 -0
  106. package/esm/assemblyManager/assemblyConfigSchema.d.ts +27 -0
  107. package/esm/assemblyManager/assemblyConfigSchema.js +51 -0
  108. package/esm/assemblyManager/assemblyManager.d.ts +528 -0
  109. package/esm/assemblyManager/assemblyManager.js +131 -0
  110. package/esm/assemblyManager/index.d.ts +3 -0
  111. package/esm/assemblyManager/index.js +2 -0
  112. package/esm/configuration/configurationSchema.d.ts +37 -0
  113. package/esm/configuration/configurationSchema.js +230 -0
  114. package/esm/configuration/configurationSlot.d.ts +33 -0
  115. package/esm/configuration/configurationSlot.js +239 -0
  116. package/esm/configuration/index.d.ts +3 -0
  117. package/esm/configuration/index.js +2 -0
  118. package/esm/configuration/types.d.ts +14 -0
  119. package/esm/configuration/types.js +1 -0
  120. package/esm/configuration/util.d.ts +10 -0
  121. package/esm/configuration/util.js +123 -0
  122. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +16 -0
  123. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +31 -0
  124. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +24 -0
  125. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +68 -0
  126. package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +18 -0
  127. package/esm/data_adapters/BaseAdapter/BaseOptions.js +1 -0
  128. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +10 -0
  129. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.js +1 -0
  130. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +11 -0
  131. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +12 -0
  132. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +6 -0
  133. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.js +1 -0
  134. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +6 -0
  135. package/esm/data_adapters/BaseAdapter/RegionsAdapter.js +1 -0
  136. package/esm/data_adapters/BaseAdapter/index.d.ts +13 -0
  137. package/esm/data_adapters/BaseAdapter/index.js +5 -0
  138. package/esm/data_adapters/BaseAdapter/stats.d.ts +10 -0
  139. package/esm/data_adapters/BaseAdapter/stats.js +48 -0
  140. package/esm/data_adapters/BaseAdapter/types.d.ts +23 -0
  141. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  142. package/esm/data_adapters/BaseAdapter/util.d.ts +12 -0
  143. package/esm/data_adapters/BaseAdapter/util.js +15 -0
  144. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +6 -0
  145. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +28 -0
  146. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +9 -0
  147. package/esm/data_adapters/CytobandAdapter/configSchema.js +24 -0
  148. package/esm/data_adapters/CytobandAdapter/index.d.ts +2 -0
  149. package/esm/data_adapters/CytobandAdapter/index.js +12 -0
  150. package/esm/data_adapters/dataAdapterCache.d.ts +14 -0
  151. package/esm/data_adapters/dataAdapterCache.js +54 -0
  152. package/esm/data_adapters/util.js +4 -0
  153. package/esm/pluggableElementTypes/AdapterType.d.ts +25 -0
  154. package/esm/pluggableElementTypes/AdapterType.js +17 -0
  155. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  156. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +10 -0
  157. package/esm/pluggableElementTypes/ConnectionType.d.ts +20 -0
  158. package/esm/pluggableElementTypes/ConnectionType.js +16 -0
  159. package/esm/pluggableElementTypes/DisplayType.d.ts +30 -0
  160. package/esm/pluggableElementTypes/DisplayType.js +20 -0
  161. package/esm/pluggableElementTypes/GlyphType.d.ts +43 -0
  162. package/esm/pluggableElementTypes/GlyphType.js +18 -0
  163. package/esm/pluggableElementTypes/InternetAccountType.d.ts +12 -0
  164. package/esm/pluggableElementTypes/InternetAccountType.js +10 -0
  165. package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
  166. package/esm/pluggableElementTypes/RpcMethodType.d.ts +19 -0
  167. package/esm/pluggableElementTypes/RpcMethodType.js +88 -0
  168. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +11 -0
  169. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +28 -0
  170. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +18 -0
  171. package/esm/pluggableElementTypes/TextSearchAdapterType.js +15 -0
  172. package/esm/pluggableElementTypes/TrackType.d.ts +16 -0
  173. package/esm/pluggableElementTypes/TrackType.js +14 -0
  174. package/esm/pluggableElementTypes/ViewType.d.ts +29 -0
  175. package/esm/pluggableElementTypes/ViewType.js +18 -0
  176. package/esm/pluggableElementTypes/WidgetType.d.ts +27 -0
  177. package/esm/pluggableElementTypes/WidgetType.js +18 -0
  178. package/esm/pluggableElementTypes/index.d.ts +27 -0
  179. package/esm/pluggableElementTypes/index.js +14 -0
  180. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +29 -0
  181. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +35 -0
  182. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +180 -0
  183. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +104 -0
  184. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +74 -0
  185. package/esm/pluggableElementTypes/models/BaseTrackModel.js +203 -0
  186. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +52 -0
  187. package/esm/pluggableElementTypes/models/BaseViewModel.js +42 -0
  188. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +86 -0
  189. package/esm/pluggableElementTypes/models/InternetAccountModel.js +151 -0
  190. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +16 -0
  191. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -0
  192. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +27 -0
  193. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +32 -0
  194. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +87 -0
  195. package/esm/pluggableElementTypes/models/baseTrackConfig.js +134 -0
  196. package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +11 -0
  197. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +158 -0
  198. package/esm/pluggableElementTypes/models/index.d.ts +14 -0
  199. package/esm/pluggableElementTypes/models/index.js +8 -0
  200. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.d.ts +4 -0
  201. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +9 -0
  202. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +5 -0
  203. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +17 -0
  204. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +7 -0
  205. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +108 -0
  206. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +5 -0
  207. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +91 -0
  208. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +11 -0
  209. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.js +1 -0
  210. package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +52 -0
  211. package/esm/pluggableElementTypes/renderers/BoxRendererType.js +78 -0
  212. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +4 -0
  213. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +4 -0
  214. package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +58 -0
  215. package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +77 -0
  216. package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +31 -0
  217. package/esm/pluggableElementTypes/renderers/LayoutSession.js +37 -0
  218. package/esm/pluggableElementTypes/renderers/RendererType.d.ts +28 -0
  219. package/esm/pluggableElementTypes/renderers/RendererType.js +20 -0
  220. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +57 -0
  221. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +113 -0
  222. package/esm/pluggableElementTypes/renderers/index.d.ts +6 -0
  223. package/esm/pluggableElementTypes/renderers/index.js +6 -0
  224. package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +30 -0
  225. package/esm/pluggableElementTypes/renderers/util.d.ts +3 -0
  226. package/esm/pluggableElementTypes/renderers/util.js +14 -0
  227. package/esm/rpc/BaseRpcDriver.d.ts +40 -0
  228. package/esm/rpc/BaseRpcDriver.js +116 -0
  229. package/esm/rpc/MainThreadRpcDriver.d.ts +14 -0
  230. package/esm/rpc/MainThreadRpcDriver.js +33 -0
  231. package/esm/rpc/RpcManager.d.ts +35 -0
  232. package/esm/rpc/RpcManager.js +63 -0
  233. package/esm/rpc/WebWorkerRpcDriver.d.ts +31 -0
  234. package/esm/rpc/WebWorkerRpcDriver.js +77 -0
  235. package/esm/rpc/baseRpcConfig.d.ts +8 -0
  236. package/esm/rpc/baseRpcConfig.js +10 -0
  237. package/esm/rpc/configSchema.d.ts +9 -0
  238. package/esm/rpc/configSchema.js +22 -0
  239. package/esm/rpc/coreRpcMethods.d.ts +12 -0
  240. package/esm/rpc/coreRpcMethods.js +12 -0
  241. package/esm/rpc/mainThreadRpcConfig.d.ts +8 -0
  242. package/esm/rpc/mainThreadRpcConfig.js +8 -0
  243. package/esm/rpc/methods/CoreFreeResources.d.ts +6 -0
  244. package/esm/rpc/methods/CoreFreeResources.js +14 -0
  245. package/esm/rpc/methods/CoreGetExportData.d.ts +19 -0
  246. package/esm/rpc/methods/CoreGetExportData.js +18 -0
  247. package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +17 -0
  248. package/esm/rpc/methods/CoreGetFeatureDensityStats.js +25 -0
  249. package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +11 -0
  250. package/esm/rpc/methods/CoreGetFeatureDetails.js +24 -0
  251. package/esm/rpc/methods/CoreGetFeatures.d.ts +18 -0
  252. package/esm/rpc/methods/CoreGetFeatures.js +31 -0
  253. package/esm/rpc/methods/CoreGetFileInfo.d.ts +9 -0
  254. package/esm/rpc/methods/CoreGetFileInfo.js +15 -0
  255. package/esm/rpc/methods/CoreGetMetadata.d.ts +9 -0
  256. package/esm/rpc/methods/CoreGetMetadata.js +15 -0
  257. package/esm/rpc/methods/CoreGetRefNames.d.ts +10 -0
  258. package/esm/rpc/methods/CoreGetRefNames.js +19 -0
  259. package/esm/rpc/methods/CoreGetRegions.d.ts +8 -0
  260. package/esm/rpc/methods/CoreGetRegions.js +15 -0
  261. package/esm/rpc/methods/CoreGetSequence.d.ts +13 -0
  262. package/esm/rpc/methods/CoreGetSequence.js +17 -0
  263. package/esm/rpc/methods/CoreRender.d.ts +14 -0
  264. package/esm/rpc/methods/CoreRender.js +35 -0
  265. package/esm/rpc/methods/CoreSaveFeatureData.d.ts +16 -0
  266. package/esm/rpc/methods/CoreSaveFeatureData.js +32 -0
  267. package/esm/rpc/methods/util.d.ts +15 -0
  268. package/esm/rpc/methods/util.js +7 -0
  269. package/esm/rpc/webWorkerRpcConfig.d.ts +8 -0
  270. package/esm/rpc/webWorkerRpcConfig.js +8 -0
  271. package/esm/ui/AppLogo.d.ts +7 -0
  272. package/esm/ui/AppLogo.js +10 -0
  273. package/esm/ui/AssemblySelector.d.ts +13 -0
  274. package/esm/ui/AssemblySelector.js +39 -0
  275. package/esm/ui/BaseTooltip.d.ts +8 -0
  276. package/esm/ui/BaseTooltip.js +42 -0
  277. package/esm/ui/CascadingMenu.d.ts +30 -0
  278. package/esm/ui/CascadingMenu.js +48 -0
  279. package/esm/ui/CascadingMenuButton.d.ts +26 -0
  280. package/esm/ui/CascadingMenuButton.js +24 -0
  281. package/esm/ui/CascadingMenuHelpDialog.d.ts +5 -0
  282. package/esm/ui/CascadingMenuHelpDialog.js +10 -0
  283. package/esm/ui/CascadingMenuHelpIconButton.d.ts +5 -0
  284. package/esm/ui/CascadingMenuHelpIconButton.js +15 -0
  285. package/esm/ui/ColorPicker.js +62 -0
  286. package/esm/ui/ConfirmDialog.d.ts +10 -0
  287. package/esm/ui/ConfirmDialog.js +13 -0
  288. package/esm/ui/DataGridFlexContainer.d.ts +5 -0
  289. package/esm/ui/DataGridFlexContainer.js +12 -0
  290. package/esm/ui/Dialog.d.ts +7 -0
  291. package/esm/ui/Dialog.js +45 -0
  292. package/esm/ui/DraggableDialog.js +27 -0
  293. package/esm/ui/DropDownMenu.d.ts +6 -0
  294. package/esm/ui/DropDownMenu.js +24 -0
  295. package/esm/ui/EditableTypography.js +60 -0
  296. package/esm/ui/ErrorBoundary.d.ts +17 -0
  297. package/esm/ui/ErrorBoundary.js +16 -0
  298. package/esm/ui/ErrorMessage.js +56 -0
  299. package/esm/ui/ErrorMessageStackTraceContents.d.ts +4 -0
  300. package/esm/ui/ErrorMessageStackTraceContents.js +25 -0
  301. package/esm/ui/ErrorMessageStackTraceDialog.js +108 -0
  302. package/esm/ui/ExternalLink.js +7 -0
  303. package/esm/ui/FactoryResetDialog.js +18 -0
  304. package/esm/ui/FatalErrorDialog.js +18 -0
  305. package/esm/ui/FileSelector/FileSelector.d.ts +11 -0
  306. package/esm/ui/FileSelector/FileSelector.js +52 -0
  307. package/esm/ui/FileSelector/LocalFileChooser.d.ts +6 -0
  308. package/esm/ui/FileSelector/LocalFileChooser.js +39 -0
  309. package/esm/ui/FileSelector/LocationInput.d.ts +9 -0
  310. package/esm/ui/FileSelector/LocationInput.js +15 -0
  311. package/esm/ui/FileSelector/SourceTypeSelector.d.ts +9 -0
  312. package/esm/ui/FileSelector/SourceTypeSelector.js +38 -0
  313. package/esm/ui/FileSelector/UrlChooser.d.ts +8 -0
  314. package/esm/ui/FileSelector/UrlChooser.js +17 -0
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  671. package/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +0 -27
  672. package/pluggableElementTypes/models/baseInternetAccountConfig.js +0 -35
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  677. package/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -60
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  679. package/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -26
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  685. package/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -25
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  687. package/pluggableElementTypes/renderers/RendererType.d.ts +0 -25
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  690. package/pluggableElementTypes/renderers/RpcRenderedSvgGroup.js +0 -9
  691. package/pluggableElementTypes/renderers/ServerSideRenderedContent.d.ts +0 -6
  692. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +0 -8
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  700. package/rpc/MainThreadRpcDriver.d.ts +0 -14
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  712. package/rpc/mainThreadRpcConfig.d.ts +0 -8
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  724. package/rpc/methods/CoreGetMetadata.d.ts +0 -9
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  726. package/rpc/methods/CoreGetRefNames.d.ts +0 -9
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  728. package/rpc/methods/CoreRender.d.ts +0 -10
  729. package/rpc/methods/CoreRender.js +0 -46
  730. package/rpc/methods/util.d.ts +0 -15
  731. package/rpc/methods/util.js +0 -9
  732. package/rpc/webWorkerRpcConfig.d.ts +0 -8
  733. package/rpc/webWorkerRpcConfig.js +0 -13
  734. package/stories/JBrowseCore.stories.d.ts +0 -5
  735. package/stories/JBrowseCore.stories.js +0 -10
  736. package/stories/examples/WithSequencePanel.d.ts +0 -6
  737. package/stories/examples/WithSequencePanel.js +0 -42
  738. package/stories/examples/index.d.ts +0 -1
  739. package/stories/examples/index.js +0 -17
  740. package/stories/examples/util.d.ts +0 -33
  741. package/stories/examples/util.js +0 -235
  742. package/tsconfig.build.tsbuildinfo +0 -1
  743. package/ui/AppLogo.d.ts +0 -7
  744. package/ui/AppLogo.js +0 -12
  745. package/ui/AssemblySelector.d.ts +0 -13
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  754. package/ui/DataGridFlexContainer.d.ts +0 -3
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  756. package/ui/Dialog.d.ts +0 -7
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  758. package/ui/DraggableDialog.js +0 -32
  759. package/ui/DropDownMenu.d.ts +0 -8
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  765. package/ui/ErrorMessageStackTraceDialog.js +0 -149
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  769. package/ui/FileSelector/FileSelector.d.ts +0 -11
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  771. package/ui/FileSelector/LocalFileChooser.d.ts +0 -6
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  773. package/ui/FileSelector/UrlChooser.d.ts +0 -8
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  779. package/ui/LoadingEllipses.d.ts +0 -6
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  781. package/ui/Logo.js +0 -46
  782. package/ui/Menu.d.ts +0 -53
  783. package/ui/Menu.js +0 -233
  784. package/ui/MenuButton.d.ts +0 -10
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  786. package/ui/PrerenderedCanvas.d.ts +0 -10
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  788. package/ui/RedErrorMessageBox.js +0 -19
  789. package/ui/ResizeHandle.js +0 -72
  790. package/ui/ReturnToImportFormDialog.js +0 -18
  791. package/ui/SanitizedHTML.js +0 -64
  792. package/ui/Snackbar.d.ts +0 -10
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  798. package/ui/colors.js +0 -78
  799. package/ui/hooks.d.ts +0 -66
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  803. package/ui/react-colorful.d.ts +0 -17
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  810. package/util/Base1DViewModel.d.ts +0 -61
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  891. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/ArrayValue.d.ts +0 -0
  892. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/BasicValue.d.ts +0 -0
  893. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/DataGridDetails.d.ts +0 -0
  894. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/FieldName.d.ts +0 -0
  895. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/SimpleField.d.ts +0 -0
  896. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/UriField.d.ts +0 -0
  897. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/util.d.ts +0 -0
  898. /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +0 -0
  899. /package/{PhasedScheduler.d.ts → esm/PhasedScheduler.d.ts} +0 -0
  900. /package/{ReExports → esm/ReExports}/BaseFeatureDetails.d.ts +0 -0
  901. /package/{ReExports → esm/ReExports}/DataGrid.d.ts +0 -0
  902. /package/{ReExports → esm/ReExports}/MuiDataGridReExports.d.ts +0 -0
  903. /package/{ReExports → esm/ReExports}/lazify.d.ts +0 -0
  904. /package/{ReExports → esm/ReExports}/list.d.ts +0 -0
  905. /package/{ReExports → esm/ReExports}/modules.d.ts +0 -0
  906. /package/{data_adapters → esm/data_adapters}/util.d.ts +0 -0
  907. /package/{pluggableElementTypes → esm/pluggableElementTypes}/PluggableElementBase.d.ts +0 -0
  908. /package/{pluggableElementTypes → esm/pluggableElementTypes}/renderers/util/serializableFilterChain.d.ts +0 -0
  909. /package/{ui → esm/ui}/ColorPicker.d.ts +0 -0
  910. /package/{ui → esm/ui}/DraggableDialog.d.ts +0 -0
  911. /package/{ui → esm/ui}/EditableTypography.d.ts +0 -0
  912. /package/{ui → esm/ui}/ErrorMessage.d.ts +0 -0
  913. /package/{ui → esm/ui}/ErrorMessageStackTraceDialog.d.ts +0 -0
  914. /package/{ui → esm/ui}/ExternalLink.d.ts +0 -0
  915. /package/{ui → esm/ui}/FactoryResetDialog.d.ts +0 -0
  916. /package/{ui → esm/ui}/FatalErrorDialog.d.ts +0 -0
  917. /package/{ui → esm/ui}/HoverMenu.d.ts +0 -0
  918. /package/{ui → esm/ui}/Icons.d.ts +0 -0
  919. /package/{ui → esm/ui}/Logo.d.ts +0 -0
  920. /package/{ui → esm/ui}/RedErrorMessageBox.d.ts +0 -0
  921. /package/{ui → esm/ui}/ResizeHandle.d.ts +0 -0
  922. /package/{ui → esm/ui}/ReturnToImportFormDialog.d.ts +0 -0
  923. /package/{ui → esm/ui}/SanitizedHTML.d.ts +0 -0
  924. /package/{ui → esm/ui}/colors.d.ts +0 -0
  925. /package/{ui → esm/ui}/useEvent.d.ts +0 -0
  926. /package/{util → esm/util}/aborting.d.ts +0 -0
  927. /package/{util → esm/util}/analytics.d.ts +0 -0
  928. /package/{util → esm/util}/blobToDataURL.d.ts +0 -0
  929. /package/{util → esm/util}/color/cssColorsLevel4.d.ts +0 -0
  930. /package/{util → esm/util}/dedupe.d.ts +0 -0
  931. /package/{util → esm/util}/formatFastaStrings.d.ts +0 -0
  932. /package/{util → esm/util}/idMaker.d.ts +0 -0
  933. /package/{util → esm/util}/io/RemoteFileWithRangeCache.d.ts +0 -0
  934. /package/{util → esm/util}/jexlStrings.d.ts +0 -0
  935. /package/{util → esm/util}/layouts/SceneGraph.d.ts +0 -0
  936. /package/{util → esm/util}/nextTick.d.ts +0 -0
  937. /package/{util → esm/util}/parseLineByLine.d.ts +0 -0
  938. /package/{util → esm/util}/range.d.ts +0 -0
  939. /package/{util → esm/util}/useMeasure.d.ts +0 -0
  940. /package/{util → esm/util}/when.d.ts +0 -0
package/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js DELETED
@@ -1,585 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.default = {
4
- source: 'BestRefSeq',
5
- type: 'gene',
6
- start: 35331036,
7
- end: 35395251,
8
- strand: -1,
9
- phase: 0,
10
- refName: 'NC_000001.10',
11
- id: 'gene625',
12
- dbxref: ['GeneID:58512', 'HGNC:HGNC:30368', 'MIM:611413'],
13
- name: 'DLGAP3',
14
- description: 'DLG associated protein 3',
15
- gbkey: 'Gene',
16
- gene: 'DLGAP3',
17
- gene_biotype: 'protein_coding',
18
- gene_synonym: ['DAP3', 'SAPAP3'],
19
- subfeatures: [
20
- {
21
- source: 'BestRefSeq',
22
- type: 'mRNA',
23
- start: 35331036,
24
- end: 35395251,
25
- strand: -1,
26
- phase: 0,
27
- refName: 'NC_000001.10',
28
- id: 'mRNA1315',
29
- parent: 'gene625',
30
- dbxref: [
31
- 'GeneID:58512',
32
- 'Genbank:NM_001080418.3',
33
- 'HGNC:HGNC:30368',
34
- 'MIM:611413',
35
- ],
36
- name: 'NM_001080418.3',
37
- gbkey: 'mRNA',
38
- gene: 'DLGAP3',
39
- product: 'DLG associated protein 3',
40
- tag: 'RefSeq Select',
41
- transcript_id: 'NM_001080418.3',
42
- subfeatures: [
43
- {
44
- source: 'BestRefSeq',
45
- type: 'exon',
46
- start: 35331036,
47
- end: 35331902,
48
- strand: -1,
49
- phase: 0,
50
- refName: 'NC_000001.10',
51
- parent: 'mRNA1315',
52
- dbxref: [
53
- 'GeneID:58512',
54
- 'Genbank:NM_001080418.3',
55
- 'HGNC:HGNC:30368',
56
- 'MIM:611413',
57
- ],
58
- gbkey: 'mRNA',
59
- gene: 'DLGAP3',
60
- product: 'DLG associated protein 3',
61
- tag: 'RefSeq Select',
62
- transcript_id: 'NM_001080418.3',
63
- uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-0',
64
- parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
65
- },
66
- {
67
- source: 'BestRefSeq',
68
- type: 'CDS',
69
- start: 35331683,
70
- end: 35331902,
71
- strand: -1,
72
- phase: 0,
73
- refName: 'NC_000001.10',
74
- id: 'CDS1270',
75
- parent: 'mRNA1315',
76
- dbxref: [
77
- 'CCDS:CCDS30670.1',
78
- 'GeneID:58512',
79
- 'Genbank:NP_001073887.1',
80
- 'HGNC:HGNC:30368',
81
- 'MIM:611413',
82
- ],
83
- name: 'NP_001073887.1',
84
- gbkey: 'CDS',
85
- gene: 'DLGAP3',
86
- product: 'disks large-associated protein 3',
87
- protein_id: 'NP_001073887.1',
88
- tag: 'RefSeq Select',
89
- uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-1',
90
- parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
91
- },
92
- {
93
- source: 'BestRefSeq',
94
- type: 'CDS',
95
- start: 35332648,
96
- end: 35332792,
97
- strand: -1,
98
- phase: 0,
99
- refName: 'NC_000001.10',
100
- id: 'CDS1270',
101
- parent: 'mRNA1315',
102
- dbxref: [
103
- 'CCDS:CCDS30670.1',
104
- 'GeneID:58512',
105
- 'Genbank:NP_001073887.1',
106
- 'HGNC:HGNC:30368',
107
- 'MIM:611413',
108
- ],
109
- name: 'NP_001073887.1',
110
- gbkey: 'CDS',
111
- gene: 'DLGAP3',
112
- product: 'disks large-associated protein 3',
113
- protein_id: 'NP_001073887.1',
114
- tag: 'RefSeq Select',
115
- uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-2',
116
- parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
117
- },
118
- {
119
- source: 'BestRefSeq',
120
- type: 'CDS',
121
- start: 35333136,
122
- end: 35333228,
123
- strand: -1,
124
- phase: 2,
125
- refName: 'NC_000001.10',
126
- id: 'CDS1270',
127
- parent: 'mRNA1315',
128
- dbxref: [
129
- 'CCDS:CCDS30670.1',
130
- 'GeneID:58512',
131
- 'Genbank:NP_001073887.1',
132
- 'HGNC:HGNC:30368',
133
- 'MIM:611413',
134
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135
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