@jbrowse/core 3.6.5 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +32 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +13 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +43 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +8 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +17 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +20 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +57 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +11 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +42 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +14 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +14 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +22 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.js +1 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +26 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +41 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +7 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +44 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +7 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +34 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +26 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +3 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +29 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +11 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +40 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +105 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +5 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +64 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +48 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.d.ts +1 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +31 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +83 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +16 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +83 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +16 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +52 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +9 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +21 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +22 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +80 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +583 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +141 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +1116 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.js +1 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +13 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +73 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +42 -0
- package/esm/BaseFeatureWidget/configSchema.d.ts +2 -0
- package/esm/BaseFeatureWidget/configSchema.js +3 -0
- package/esm/BaseFeatureWidget/index.d.ts +2 -0
- package/esm/BaseFeatureWidget/index.js +2 -0
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +101 -0
- package/esm/BaseFeatureWidget/stateModelFactory.js +96 -0
- package/esm/BaseFeatureWidget/types.d.ts +22 -0
- package/esm/BaseFeatureWidget/types.js +1 -0
- package/esm/BaseFeatureWidget/util.d.ts +51 -0
- package/esm/BaseFeatureWidget/util.js +95 -0
- package/esm/CorePlugin.d.ts +6 -0
- package/esm/CorePlugin.js +24 -0
- package/esm/PhasedScheduler.js +25 -0
- package/esm/Plugin.d.ts +13 -0
- package/esm/Plugin.js +9 -0
- package/esm/PluginLoader.d.ts +64 -0
- package/esm/PluginLoader.js +164 -0
- package/esm/PluginManager.d.ts +125 -0
- package/esm/PluginManager.js +414 -0
- package/esm/ReExports/BaseFeatureDetails.js +9 -0
- package/esm/ReExports/DataGrid.js +1 -0
- package/esm/ReExports/MuiDataGridReExports.js +131 -0
- package/esm/ReExports/MuiReExports.d.ts +134 -0
- package/esm/ReExports/MuiReExports.js +115 -0
- package/esm/ReExports/index.d.ts +1 -0
- package/esm/ReExports/index.js +1 -0
- package/esm/ReExports/lazify.js +10 -0
- package/esm/ReExports/list.js +275 -0
- package/esm/ReExports/modules.js +149 -0
- package/esm/TextSearch/BaseResults.d.ts +46 -0
- package/esm/TextSearch/BaseResults.js +67 -0
- package/esm/TextSearch/TextSearchManager.d.ts +48 -0
- package/esm/TextSearch/TextSearchManager.js +77 -0
- package/esm/assemblyManager/assembly.d.ts +75 -0
- package/esm/assemblyManager/assembly.js +328 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +27 -0
- package/esm/assemblyManager/assemblyConfigSchema.js +51 -0
- package/esm/assemblyManager/assemblyManager.d.ts +528 -0
- package/esm/assemblyManager/assemblyManager.js +131 -0
- package/esm/assemblyManager/index.d.ts +3 -0
- package/esm/assemblyManager/index.js +2 -0
- package/esm/configuration/configurationSchema.d.ts +37 -0
- package/esm/configuration/configurationSchema.js +230 -0
- package/esm/configuration/configurationSlot.d.ts +33 -0
- package/esm/configuration/configurationSlot.js +239 -0
- package/esm/configuration/index.d.ts +3 -0
- package/esm/configuration/index.js +2 -0
- package/esm/configuration/types.d.ts +14 -0
- package/esm/configuration/types.js +1 -0
- package/esm/configuration/util.d.ts +10 -0
- package/esm/configuration/util.js +123 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +16 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +31 -0
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +24 -0
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +68 -0
- package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +18 -0
- package/esm/data_adapters/BaseAdapter/BaseOptions.js +1 -0
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +10 -0
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.js +1 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +11 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +12 -0
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +6 -0
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.js +1 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +6 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.js +1 -0
- package/esm/data_adapters/BaseAdapter/index.d.ts +13 -0
- package/esm/data_adapters/BaseAdapter/index.js +5 -0
- package/esm/data_adapters/BaseAdapter/stats.d.ts +10 -0
- package/esm/data_adapters/BaseAdapter/stats.js +48 -0
- package/esm/data_adapters/BaseAdapter/types.d.ts +23 -0
- package/esm/data_adapters/BaseAdapter/types.js +1 -0
- package/esm/data_adapters/BaseAdapter/util.d.ts +12 -0
- package/esm/data_adapters/BaseAdapter/util.js +15 -0
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +6 -0
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +28 -0
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +9 -0
- package/esm/data_adapters/CytobandAdapter/configSchema.js +24 -0
- package/esm/data_adapters/CytobandAdapter/index.d.ts +2 -0
- package/esm/data_adapters/CytobandAdapter/index.js +12 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +14 -0
- package/esm/data_adapters/dataAdapterCache.js +54 -0
- package/esm/data_adapters/util.js +4 -0
- package/esm/pluggableElementTypes/AdapterType.d.ts +25 -0
- package/esm/pluggableElementTypes/AdapterType.js +17 -0
- package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
- package/esm/pluggableElementTypes/AddTrackWorkflowType.js +10 -0
- package/esm/pluggableElementTypes/ConnectionType.d.ts +20 -0
- package/esm/pluggableElementTypes/ConnectionType.js +16 -0
- package/esm/pluggableElementTypes/DisplayType.d.ts +30 -0
- package/esm/pluggableElementTypes/DisplayType.js +20 -0
- package/esm/pluggableElementTypes/GlyphType.d.ts +43 -0
- package/esm/pluggableElementTypes/GlyphType.js +18 -0
- package/esm/pluggableElementTypes/InternetAccountType.d.ts +12 -0
- package/esm/pluggableElementTypes/InternetAccountType.js +10 -0
- package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +19 -0
- package/esm/pluggableElementTypes/RpcMethodType.js +88 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +11 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +28 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +18 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.js +15 -0
- package/esm/pluggableElementTypes/TrackType.d.ts +16 -0
- package/esm/pluggableElementTypes/TrackType.js +14 -0
- package/esm/pluggableElementTypes/ViewType.d.ts +29 -0
- package/esm/pluggableElementTypes/ViewType.js +18 -0
- package/esm/pluggableElementTypes/WidgetType.d.ts +27 -0
- package/esm/pluggableElementTypes/WidgetType.js +18 -0
- package/esm/pluggableElementTypes/index.d.ts +27 -0
- package/esm/pluggableElementTypes/index.js +14 -0
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +29 -0
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +35 -0
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +180 -0
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +104 -0
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +74 -0
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +203 -0
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +52 -0
- package/esm/pluggableElementTypes/models/BaseViewModel.js +42 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +86 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +151 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +16 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -0
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +27 -0
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +32 -0
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +87 -0
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +134 -0
- package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +11 -0
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +158 -0
- package/esm/pluggableElementTypes/models/index.d.ts +14 -0
- package/esm/pluggableElementTypes/models/index.js +8 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.d.ts +4 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +9 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +5 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +17 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +7 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +108 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +5 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +91 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +11 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.js +1 -0
- package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +52 -0
- package/esm/pluggableElementTypes/renderers/BoxRendererType.js +78 -0
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +4 -0
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +4 -0
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +58 -0
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +77 -0
- package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +31 -0
- package/esm/pluggableElementTypes/renderers/LayoutSession.js +37 -0
- package/esm/pluggableElementTypes/renderers/RendererType.d.ts +28 -0
- package/esm/pluggableElementTypes/renderers/RendererType.js +20 -0
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +57 -0
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +113 -0
- package/esm/pluggableElementTypes/renderers/index.d.ts +6 -0
- package/esm/pluggableElementTypes/renderers/index.js +6 -0
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +30 -0
- package/esm/pluggableElementTypes/renderers/util.d.ts +3 -0
- package/esm/pluggableElementTypes/renderers/util.js +14 -0
- package/esm/rpc/BaseRpcDriver.d.ts +40 -0
- package/esm/rpc/BaseRpcDriver.js +116 -0
- package/esm/rpc/MainThreadRpcDriver.d.ts +14 -0
- package/esm/rpc/MainThreadRpcDriver.js +33 -0
- package/esm/rpc/RpcManager.d.ts +35 -0
- package/esm/rpc/RpcManager.js +63 -0
- package/esm/rpc/WebWorkerRpcDriver.d.ts +31 -0
- package/esm/rpc/WebWorkerRpcDriver.js +77 -0
- package/esm/rpc/baseRpcConfig.d.ts +8 -0
- package/esm/rpc/baseRpcConfig.js +10 -0
- package/esm/rpc/configSchema.d.ts +9 -0
- package/esm/rpc/configSchema.js +22 -0
- package/esm/rpc/coreRpcMethods.d.ts +12 -0
- package/esm/rpc/coreRpcMethods.js +12 -0
- package/esm/rpc/mainThreadRpcConfig.d.ts +8 -0
- package/esm/rpc/mainThreadRpcConfig.js +8 -0
- package/esm/rpc/methods/CoreFreeResources.d.ts +6 -0
- package/esm/rpc/methods/CoreFreeResources.js +14 -0
- package/esm/rpc/methods/CoreGetExportData.d.ts +19 -0
- package/esm/rpc/methods/CoreGetExportData.js +18 -0
- package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +17 -0
- package/esm/rpc/methods/CoreGetFeatureDensityStats.js +25 -0
- package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +11 -0
- package/esm/rpc/methods/CoreGetFeatureDetails.js +24 -0
- package/esm/rpc/methods/CoreGetFeatures.d.ts +18 -0
- package/esm/rpc/methods/CoreGetFeatures.js +31 -0
- package/esm/rpc/methods/CoreGetFileInfo.d.ts +9 -0
- package/esm/rpc/methods/CoreGetFileInfo.js +15 -0
- package/esm/rpc/methods/CoreGetMetadata.d.ts +9 -0
- package/esm/rpc/methods/CoreGetMetadata.js +15 -0
- package/esm/rpc/methods/CoreGetRefNames.d.ts +10 -0
- package/esm/rpc/methods/CoreGetRefNames.js +19 -0
- package/esm/rpc/methods/CoreGetRegions.d.ts +8 -0
- package/esm/rpc/methods/CoreGetRegions.js +15 -0
- package/esm/rpc/methods/CoreGetSequence.d.ts +13 -0
- package/esm/rpc/methods/CoreGetSequence.js +17 -0
- package/esm/rpc/methods/CoreRender.d.ts +14 -0
- package/esm/rpc/methods/CoreRender.js +35 -0
- package/esm/rpc/methods/CoreSaveFeatureData.d.ts +16 -0
- package/esm/rpc/methods/CoreSaveFeatureData.js +32 -0
- package/esm/rpc/methods/util.d.ts +15 -0
- package/esm/rpc/methods/util.js +7 -0
- package/esm/rpc/webWorkerRpcConfig.d.ts +8 -0
- package/esm/rpc/webWorkerRpcConfig.js +8 -0
- package/esm/ui/AppLogo.d.ts +7 -0
- package/esm/ui/AppLogo.js +10 -0
- package/esm/ui/AssemblySelector.d.ts +13 -0
- package/esm/ui/AssemblySelector.js +39 -0
- package/esm/ui/BaseTooltip.d.ts +8 -0
- package/esm/ui/BaseTooltip.js +42 -0
- package/esm/ui/CascadingMenu.d.ts +30 -0
- package/esm/ui/CascadingMenu.js +48 -0
- package/esm/ui/CascadingMenuButton.d.ts +26 -0
- package/esm/ui/CascadingMenuButton.js +24 -0
- package/esm/ui/CascadingMenuHelpDialog.d.ts +5 -0
- package/esm/ui/CascadingMenuHelpDialog.js +10 -0
- package/esm/ui/CascadingMenuHelpIconButton.d.ts +5 -0
- package/esm/ui/CascadingMenuHelpIconButton.js +15 -0
- package/esm/ui/ColorPicker.js +62 -0
- package/esm/ui/ConfirmDialog.d.ts +10 -0
- package/esm/ui/ConfirmDialog.js +13 -0
- package/esm/ui/DataGridFlexContainer.d.ts +5 -0
- package/esm/ui/DataGridFlexContainer.js +12 -0
- package/esm/ui/Dialog.d.ts +7 -0
- package/esm/ui/Dialog.js +45 -0
- package/esm/ui/DraggableDialog.js +27 -0
- package/esm/ui/DropDownMenu.d.ts +6 -0
- package/esm/ui/DropDownMenu.js +24 -0
- package/esm/ui/EditableTypography.js +60 -0
- package/esm/ui/ErrorBoundary.d.ts +17 -0
- package/esm/ui/ErrorBoundary.js +16 -0
- package/esm/ui/ErrorMessage.js +56 -0
- package/esm/ui/ErrorMessageStackTraceContents.d.ts +4 -0
- package/esm/ui/ErrorMessageStackTraceContents.js +25 -0
- package/esm/ui/ErrorMessageStackTraceDialog.js +108 -0
- package/esm/ui/ExternalLink.js +7 -0
- package/esm/ui/FactoryResetDialog.js +18 -0
- package/esm/ui/FatalErrorDialog.js +18 -0
- package/esm/ui/FileSelector/FileSelector.d.ts +11 -0
- package/esm/ui/FileSelector/FileSelector.js +52 -0
- package/esm/ui/FileSelector/LocalFileChooser.d.ts +6 -0
- package/esm/ui/FileSelector/LocalFileChooser.js +39 -0
- package/esm/ui/FileSelector/LocationInput.d.ts +9 -0
- package/esm/ui/FileSelector/LocationInput.js +15 -0
- package/esm/ui/FileSelector/SourceTypeSelector.d.ts +9 -0
- package/esm/ui/FileSelector/SourceTypeSelector.js +38 -0
- package/esm/ui/FileSelector/UrlChooser.d.ts +8 -0
- package/esm/ui/FileSelector/UrlChooser.js +17 -0
- package/esm/ui/FileSelector/index.d.ts +1 -0
- package/esm/ui/FileSelector/index.js +1 -0
- package/esm/ui/FileSelector/useInternetAccounts.d.ts +178 -0
- package/esm/ui/FileSelector/useInternetAccounts.js +18 -0
- package/esm/ui/HoverMenu.js +15 -0
- package/esm/ui/Icons.js +14 -0
- package/esm/ui/LoadingEllipses.d.ts +7 -0
- package/esm/ui/LoadingEllipses.js +31 -0
- package/esm/ui/Logo.js +42 -0
- package/esm/ui/Menu.d.ts +2 -0
- package/esm/ui/Menu.js +1 -0
- package/esm/ui/MenuButton.d.ts +1 -0
- package/esm/ui/MenuButton.js +1 -0
- package/esm/ui/MenuItems.d.ts +15 -0
- package/esm/ui/MenuItems.js +59 -0
- package/esm/ui/MenuTypes.d.ts +39 -0
- package/esm/ui/MenuTypes.js +1 -0
- package/esm/ui/PrerenderedCanvas.d.ts +10 -0
- package/esm/ui/PrerenderedCanvas.js +33 -0
- package/esm/ui/RedErrorMessageBox.js +16 -0
- package/esm/ui/ResizeHandle.js +67 -0
- package/esm/ui/ReturnToImportFormDialog.js +13 -0
- package/esm/ui/SanitizedHTML.js +61 -0
- package/esm/ui/Snackbar.d.ts +10 -0
- package/esm/ui/Snackbar.js +14 -0
- package/esm/ui/SnackbarContents.d.ts +5 -0
- package/esm/ui/SnackbarContents.js +11 -0
- package/esm/ui/SnackbarModel.d.ts +17 -0
- package/esm/ui/SnackbarModel.js +55 -0
- package/esm/ui/colors.js +67 -0
- package/esm/ui/index.d.ts +20 -0
- package/esm/ui/index.js +20 -0
- package/esm/ui/react-colorful.d.ts +3 -0
- package/esm/ui/react-colorful.js +416 -0
- package/esm/ui/theme.d.ts +58 -0
- package/esm/ui/theme.js +392 -0
- package/esm/ui/useEvent.js +10 -0
- package/esm/util/Base1DUtils.d.ts +38 -0
- package/esm/util/Base1DUtils.js +205 -0
- package/esm/util/Base1DViewModel.d.ts +61 -0
- package/esm/util/Base1DViewModel.js +129 -0
- package/esm/util/QuickLRU/index.d.ts +1 -0
- package/esm/util/QuickLRU/index.js +1 -0
- package/esm/util/TimeTraveller.d.ts +19 -0
- package/esm/util/TimeTraveller.js +94 -0
- package/esm/util/aborting.js +42 -0
- package/esm/util/analytics.js +80 -0
- package/esm/util/blobToDataURL.js +14 -0
- package/esm/util/blockTypes.d.ts +59 -0
- package/esm/util/blockTypes.js +119 -0
- package/esm/util/calculateDynamicBlocks.d.ts +3 -0
- package/esm/util/calculateDynamicBlocks.js +104 -0
- package/esm/util/calculateStaticBlocks.d.ts +13 -0
- package/esm/util/calculateStaticBlocks.js +106 -0
- package/esm/util/coarseStripHTML.d.ts +1 -0
- package/esm/util/coarseStripHTML.js +17 -0
- package/esm/util/color/cssColorsLevel4.js +156 -0
- package/esm/util/color/index.d.ts +5 -0
- package/esm/util/color/index.js +39 -0
- package/esm/util/colord.d.ts +9 -0
- package/esm/util/colord.js +14 -0
- package/esm/util/compositeMap.d.ts +11 -0
- package/esm/util/compositeMap.js +59 -0
- package/esm/util/convertCodingSequenceToPeptides.d.ts +6 -0
- package/esm/util/convertCodingSequenceToPeptides.js +9 -0
- package/esm/util/dedupe.js +12 -0
- package/esm/util/fetchSeq.d.ts +8 -0
- package/esm/util/fetchSeq.js +23 -0
- package/esm/util/flatbush/index.d.ts +25 -0
- package/esm/util/flatbush/index.js +423 -0
- package/esm/util/flatqueue/index.d.ts +11 -0
- package/esm/util/flatqueue/index.js +61 -0
- package/esm/util/formatFastaStrings.js +8 -0
- package/esm/util/idMaker.js +21 -0
- package/esm/util/index.d.ts +271 -0
- package/esm/util/index.js +873 -0
- package/esm/util/io/RemoteFileWithRangeCache.js +71 -0
- package/esm/util/io/index.d.ts +7 -0
- package/esm/util/io/index.js +92 -0
- package/esm/util/isWebWorker.d.ts +1 -0
- package/esm/util/isWebWorker.js +4 -0
- package/esm/util/jexl.d.ts +2 -0
- package/esm/util/jexl.js +49 -0
- package/esm/util/jexlStrings.js +17 -0
- package/esm/util/layouts/BaseLayout.d.ts +30 -0
- package/esm/util/layouts/BaseLayout.js +1 -0
- package/esm/util/layouts/GranularRectLayout.d.ts +37 -0
- package/esm/util/layouts/GranularRectLayout.js +418 -0
- package/esm/util/layouts/MultiLayout.d.ts +12 -0
- package/esm/util/layouts/MultiLayout.js +40 -0
- package/esm/util/layouts/PileupLayout.d.ts +41 -0
- package/esm/util/layouts/PileupLayout.js +202 -0
- package/esm/util/layouts/PrecomputedLayout.d.ts +30 -0
- package/esm/util/layouts/PrecomputedLayout.js +71 -0
- package/esm/util/layouts/SceneGraph.js +121 -0
- package/esm/util/layouts/index.d.ts +8 -0
- package/esm/util/layouts/index.js +6 -0
- package/esm/util/layouts/intervalUtils.d.ts +3 -0
- package/esm/util/layouts/intervalUtils.js +63 -0
- package/esm/util/librpc.d.ts +2 -0
- package/esm/util/librpc.js +1 -0
- package/esm/util/linkify.d.ts +1 -0
- package/esm/util/linkify.js +5 -0
- package/esm/util/locString.d.ts +9 -0
- package/esm/util/locString.js +62 -0
- package/esm/util/makeAbortableReaction.d.ts +3 -0
- package/esm/util/makeAbortableReaction.js +47 -0
- package/esm/util/map-obj/index.d.ts +13 -0
- package/esm/util/map-obj/index.js +92 -0
- package/esm/util/mst-reflection.d.ts +11 -0
- package/esm/util/mst-reflection.js +54 -0
- package/esm/util/nanoid.d.ts +5 -0
- package/esm/util/nanoid.js +36 -0
- package/esm/util/nextTick.js +3 -0
- package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +5 -0
- package/esm/util/offscreenCanvasGetSerializingSvg.js +9 -0
- package/esm/util/offscreenCanvasPonyfill.d.ts +5 -0
- package/esm/util/offscreenCanvasPonyfill.js +57 -0
- package/esm/util/offscreenCanvasUtils.d.ts +12 -0
- package/esm/util/offscreenCanvasUtils.js +19 -0
- package/esm/util/parseLineByLine.js +22 -0
- package/esm/util/range.js +21 -0
- package/esm/util/renderToAbstractCanvas.d.ts +17 -0
- package/esm/util/renderToAbstractCanvas.js +53 -0
- package/esm/util/rpc.d.ts +2 -0
- package/esm/util/rpc.js +6 -0
- package/esm/util/rxjs.d.ts +4 -0
- package/esm/util/rxjs.js +16 -0
- package/esm/util/simpleFeature.d.ts +44 -0
- package/esm/util/simpleFeature.js +81 -0
- package/esm/util/stats.d.ts +23 -0
- package/esm/util/stats.js +72 -0
- package/esm/util/stopToken.d.ts +19 -0
- package/esm/util/stopToken.js +90 -0
- package/esm/util/tracks.d.ts +72 -0
- package/esm/util/tracks.js +214 -0
- package/esm/util/transferables.d.ts +2 -0
- package/esm/util/transferables.js +35 -0
- package/esm/util/tss-react/cssAndCx.d.ts +16 -0
- package/esm/util/tss-react/cssAndCx.js +97 -0
- package/esm/util/tss-react/index.d.ts +4 -0
- package/esm/util/tss-react/index.js +7 -0
- package/esm/util/tss-react/makeStyles.d.ts +15 -0
- package/esm/util/tss-react/makeStyles.js +38 -0
- package/esm/util/tss-react/mergeClasses.d.ts +2 -0
- package/esm/util/tss-react/mergeClasses.js +24 -0
- package/esm/util/tss-react/mui/index.d.ts +1 -0
- package/esm/util/tss-react/mui/index.js +1 -0
- package/esm/util/tss-react/mui/mui.d.ts +10 -0
- package/esm/util/tss-react/mui/mui.js +5 -0
- package/esm/util/tss-react/tools/classnames.d.ts +2 -0
- package/esm/util/tss-react/tools/classnames.js +44 -0
- package/esm/util/tss-react/tools/getDependencyArrayRef.d.ts +1 -0
- package/esm/util/tss-react/tools/getDependencyArrayRef.js +19 -0
- package/esm/util/tss-react/types.d.ts +13 -0
- package/esm/util/tss-react/types.js +6 -0
- package/esm/util/types/ElementId.d.ts +1 -0
- package/esm/util/types/ElementId.js +3 -0
- package/esm/util/types/index.d.ts +273 -0
- package/esm/util/types/index.js +131 -0
- package/esm/util/types/mst.d.ts +107 -0
- package/esm/util/types/mst.js +68 -0
- package/esm/util/types/util.d.ts +6 -0
- package/esm/util/types/util.js +1 -0
- package/esm/util/useFeatureSequence.d.ts +19 -0
- package/esm/util/useFeatureSequence.js +87 -0
- package/esm/util/useMeasure.js +30 -0
- package/esm/util/when.js +1 -0
- package/package.json +487 -39
- package/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +0 -38
- package/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +0 -13
- package/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +0 -48
- package/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +0 -8
- package/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +0 -13
- package/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +0 -2
- package/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +0 -23
- package/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +0 -2
- package/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +0 -13
- package/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +0 -23
- package/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +0 -2
- package/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +0 -30
- package/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +0 -63
- package/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +0 -11
- package/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +0 -48
- package/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +0 -27
- package/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +0 -2
- package/BaseFeatureWidget/BaseFeatureDetail/Position.js +0 -17
- package/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +0 -20
- package/BaseFeatureWidget/BaseFeatureDetail/UriField.js +0 -28
- package/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +0 -7
- package/BaseFeatureWidget/BaseFeatureDetail/index.js +0 -34
- package/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +0 -7
- package/BaseFeatureWidget/BaseFeatureDetail/types.js +0 -2
- package/BaseFeatureWidget/BaseFeatureDetail/util.js +0 -32
- package/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +0 -10
- package/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +0 -48
- package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +0 -7
- package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +0 -74
- package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +0 -7
- package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +0 -72
- package/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +0 -8
- package/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +0 -28
- package/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +0 -3
- package/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +0 -34
- package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +0 -17
- package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +0 -8
- package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +0 -40
- package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +0 -8
- package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +0 -141
- package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +0 -5
- package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +0 -66
- package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +0 -6
- package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +0 -50
- package/BaseFeatureWidget/SequenceFeatureDetails/hooks.d.ts +0 -10
- package/BaseFeatureWidget/SequenceFeatureDetails/hooks.js +0 -65
- package/BaseFeatureWidget/SequenceFeatureDetails/index.d.ts +0 -1
- package/BaseFeatureWidget/SequenceFeatureDetails/index.js +0 -8
- package/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +0 -28
- package/BaseFeatureWidget/SequenceFeatureDetails/model.js +0 -81
- package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +0 -16
- package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +0 -88
- package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +0 -8
- package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +0 -20
- package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +0 -10
- package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +0 -56
- package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +0 -9
- package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +0 -25
- package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +0 -10
- package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +0 -25
- package/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
- package/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -585
- package/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
- package/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1118
- package/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +0 -8
- package/BaseFeatureWidget/SequenceFeatureDetails/types.js +0 -2
- package/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +0 -17
- package/BaseFeatureWidget/SequenceFeatureDetails/util.js +0 -49
- package/BaseFeatureWidget/configSchema.d.ts +0 -2
- package/BaseFeatureWidget/configSchema.js +0 -6
- package/BaseFeatureWidget/index.d.ts +0 -2
- package/BaseFeatureWidget/index.js +0 -7
- package/BaseFeatureWidget/stateModelFactory.d.ts +0 -101
- package/BaseFeatureWidget/stateModelFactory.js +0 -99
- package/BaseFeatureWidget/types.d.ts +0 -22
- package/BaseFeatureWidget/types.js +0 -2
- package/BaseFeatureWidget/util.d.ts +0 -48
- package/BaseFeatureWidget/util.js +0 -77
- package/CorePlugin.d.ts +0 -6
- package/CorePlugin.js +0 -66
- package/PhasedScheduler.js +0 -28
- package/Plugin.d.ts +0 -13
- package/Plugin.js +0 -7
- package/PluginLoader.d.ts +0 -64
- package/PluginLoader.js +0 -174
- package/PluginManager.d.ts +0 -139
- package/PluginManager.js +0 -405
- package/ReExports/BaseFeatureDetails.js +0 -45
- package/ReExports/DataGrid.js +0 -5
- package/ReExports/MuiDataGridReExports.js +0 -167
- package/ReExports/MuiReExports.d.ts +0 -133
- package/ReExports/MuiReExports.js +0 -150
- package/ReExports/index.d.ts +0 -1
- package/ReExports/index.js +0 -8
- package/ReExports/lazify.js +0 -14
- package/ReExports/list.js +0 -273
- package/ReExports/material-ui-colors.d.ts +0 -1
- package/ReExports/material-ui-colors.js +0 -17
- package/ReExports/modules.js +0 -179
- package/TextSearch/BaseResults.d.ts +0 -46
- package/TextSearch/BaseResults.js +0 -61
- package/TextSearch/TextSearchManager.d.ts +0 -48
- package/TextSearch/TextSearchManager.js +0 -85
- package/assemblyManager/assembly.d.ts +0 -71
- package/assemblyManager/assembly.js +0 -304
- package/assemblyManager/assemblyConfigSchema.d.ts +0 -27
- package/assemblyManager/assemblyConfigSchema.js +0 -53
- package/assemblyManager/assemblyManager.d.ts +0 -499
- package/assemblyManager/assemblyManager.js +0 -134
- package/assemblyManager/index.d.ts +0 -3
- package/assemblyManager/index.js +0 -10
- package/configuration/configurationSchema.d.ts +0 -35
- package/configuration/configurationSchema.js +0 -174
- package/configuration/configurationSlot.d.ts +0 -31
- package/configuration/configurationSlot.js +0 -241
- package/configuration/index.d.ts +0 -3
- package/configuration/index.js +0 -21
- package/configuration/types.d.ts +0 -14
- package/configuration/types.js +0 -2
- package/configuration/util.d.ts +0 -10
- package/configuration/util.js +0 -123
- package/data_adapters/BaseAdapter/BaseAdapter.d.ts +0 -14
- package/data_adapters/BaseAdapter/BaseAdapter.js +0 -30
- package/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +0 -24
- package/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +0 -115
- package/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -15
- package/data_adapters/BaseAdapter/BaseOptions.js +0 -2
- package/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +0 -10
- package/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.js +0 -2
- package/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +0 -10
- package/data_adapters/BaseAdapter/BaseSequenceAdapter.js +0 -10
- package/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +0 -6
- package/data_adapters/BaseAdapter/BaseTextSearchAdapter.js +0 -2
- package/data_adapters/BaseAdapter/RegionsAdapter.d.ts +0 -6
- package/data_adapters/BaseAdapter/RegionsAdapter.js +0 -2
- package/data_adapters/BaseAdapter/index.d.ts +0 -13
- package/data_adapters/BaseAdapter/index.js +0 -25
- package/data_adapters/BaseAdapter/types.d.ts +0 -21
- package/data_adapters/BaseAdapter/types.js +0 -2
- package/data_adapters/BaseAdapter/util.d.ts +0 -12
- package/data_adapters/BaseAdapter/util.js +0 -22
- package/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +0 -6
- package/data_adapters/CytobandAdapter/CytobandAdapter.js +0 -31
- package/data_adapters/CytobandAdapter/configSchema.d.ts +0 -9
- package/data_adapters/CytobandAdapter/configSchema.js +0 -26
- package/data_adapters/CytobandAdapter/index.d.ts +0 -2
- package/data_adapters/CytobandAdapter/index.js +0 -51
- package/data_adapters/dataAdapterCache.d.ts +0 -14
- package/data_adapters/dataAdapterCache.js +0 -60
- package/data_adapters/util.js +0 -10
- package/pluggableElementTypes/AdapterType.d.ts +0 -25
- package/pluggableElementTypes/AdapterType.js +0 -19
- package/pluggableElementTypes/AddTrackWorkflowType.d.ts +0 -17
- package/pluggableElementTypes/AddTrackWorkflowType.js +0 -14
- package/pluggableElementTypes/ConnectionType.d.ts +0 -20
- package/pluggableElementTypes/ConnectionType.js +0 -17
- package/pluggableElementTypes/DisplayType.d.ts +0 -28
- package/pluggableElementTypes/DisplayType.js +0 -18
- package/pluggableElementTypes/InternetAccountType.d.ts +0 -12
- package/pluggableElementTypes/InternetAccountType.js +0 -14
- package/pluggableElementTypes/PluggableElementBase.js +0 -12
- package/pluggableElementTypes/RpcMethodType.d.ts +0 -17
- package/pluggableElementTypes/RpcMethodType.js +0 -69
- package/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +0 -11
- package/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +0 -35
- package/pluggableElementTypes/TextSearchAdapterType.d.ts +0 -18
- package/pluggableElementTypes/TextSearchAdapterType.js +0 -18
- package/pluggableElementTypes/TrackType.d.ts +0 -16
- package/pluggableElementTypes/TrackType.js +0 -18
- package/pluggableElementTypes/ViewType.d.ts +0 -29
- package/pluggableElementTypes/ViewType.js +0 -21
- package/pluggableElementTypes/WidgetType.d.ts +0 -25
- package/pluggableElementTypes/WidgetType.js +0 -17
- package/pluggableElementTypes/index.d.ts +0 -26
- package/pluggableElementTypes/index.js +0 -44
- package/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +0 -29
- package/pluggableElementTypes/models/BaseConnectionModelFactory.js +0 -38
- package/pluggableElementTypes/models/BaseDisplayModel.d.ts +0 -68
- package/pluggableElementTypes/models/BaseDisplayModel.js +0 -81
- package/pluggableElementTypes/models/BaseTrackModel.d.ts +0 -53
- package/pluggableElementTypes/models/BaseTrackModel.js +0 -145
- package/pluggableElementTypes/models/BaseViewModel.d.ts +0 -42
- package/pluggableElementTypes/models/BaseViewModel.js +0 -35
- package/pluggableElementTypes/models/InternetAccountModel.d.ts +0 -86
- package/pluggableElementTypes/models/InternetAccountModel.js +0 -155
- package/pluggableElementTypes/models/baseConnectionConfig.d.ts +0 -16
- package/pluggableElementTypes/models/baseConnectionConfig.js +0 -20
- package/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +0 -27
- package/pluggableElementTypes/models/baseInternetAccountConfig.js +0 -35
- package/pluggableElementTypes/models/baseTrackConfig.d.ts +0 -82
- package/pluggableElementTypes/models/baseTrackConfig.js +0 -135
- package/pluggableElementTypes/models/index.d.ts +0 -13
- package/pluggableElementTypes/models/index.js +0 -22
- package/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -60
- package/pluggableElementTypes/renderers/BoxRendererType.js +0 -102
- package/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -26
- package/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -34
- package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.d.ts +0 -38
- package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +0 -65
- package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -51
- package/pluggableElementTypes/renderers/FeatureRendererType.js +0 -85
- package/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -25
- package/pluggableElementTypes/renderers/LayoutSession.js +0 -42
- package/pluggableElementTypes/renderers/RendererType.d.ts +0 -25
- package/pluggableElementTypes/renderers/RendererType.js +0 -23
- package/pluggableElementTypes/renderers/RpcRenderedSvgGroup.d.ts +0 -9
- package/pluggableElementTypes/renderers/RpcRenderedSvgGroup.js +0 -9
- package/pluggableElementTypes/renderers/ServerSideRenderedContent.d.ts +0 -6
- package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +0 -8
- package/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -49
- package/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -81
- package/pluggableElementTypes/renderers/index.d.ts +0 -7
- package/pluggableElementTypes/renderers/index.js +0 -20
- package/pluggableElementTypes/renderers/util/serializableFilterChain.js +0 -32
- package/rpc/BaseRpcDriver.d.ts +0 -43
- package/rpc/BaseRpcDriver.js +0 -113
- package/rpc/MainThreadRpcDriver.d.ts +0 -14
- package/rpc/MainThreadRpcDriver.js +0 -32
- package/rpc/RpcManager.d.ts +0 -34
- package/rpc/RpcManager.js +0 -69
- package/rpc/WebWorkerRpcDriver.d.ts +0 -29
- package/rpc/WebWorkerRpcDriver.js +0 -65
- package/rpc/baseRpcConfig.d.ts +0 -8
- package/rpc/baseRpcConfig.js +0 -12
- package/rpc/configSchema.d.ts +0 -9
- package/rpc/configSchema.js +0 -27
- package/rpc/coreRpcMethods.d.ts +0 -9
- package/rpc/coreRpcMethods.js +0 -22
- package/rpc/mainThreadRpcConfig.d.ts +0 -8
- package/rpc/mainThreadRpcConfig.js +0 -13
- package/rpc/methods/CoreFreeResources.d.ts +0 -6
- package/rpc/methods/CoreFreeResources.js +0 -23
- package/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
- package/rpc/methods/CoreGetFeatureDensityStats.js +0 -36
- package/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
- package/rpc/methods/CoreGetFeatureDetails.js +0 -38
- package/rpc/methods/CoreGetFeatures.d.ts +0 -18
- package/rpc/methods/CoreGetFeatures.js +0 -40
- package/rpc/methods/CoreGetFileInfo.d.ts +0 -9
- package/rpc/methods/CoreGetFileInfo.js +0 -24
- package/rpc/methods/CoreGetMetadata.d.ts +0 -9
- package/rpc/methods/CoreGetMetadata.js +0 -24
- package/rpc/methods/CoreGetRefNames.d.ts +0 -9
- package/rpc/methods/CoreGetRefNames.js +0 -25
- package/rpc/methods/CoreRender.d.ts +0 -10
- package/rpc/methods/CoreRender.js +0 -46
- package/rpc/methods/util.d.ts +0 -15
- package/rpc/methods/util.js +0 -9
- package/rpc/webWorkerRpcConfig.d.ts +0 -8
- package/rpc/webWorkerRpcConfig.js +0 -13
- package/stories/JBrowseCore.stories.d.ts +0 -5
- package/stories/JBrowseCore.stories.js +0 -10
- package/stories/examples/WithSequencePanel.d.ts +0 -6
- package/stories/examples/WithSequencePanel.js +0 -42
- package/stories/examples/index.d.ts +0 -1
- package/stories/examples/index.js +0 -17
- package/stories/examples/util.d.ts +0 -33
- package/stories/examples/util.js +0 -235
- package/tsconfig.build.tsbuildinfo +0 -1
- package/ui/AppLogo.d.ts +0 -7
- package/ui/AppLogo.js +0 -12
- package/ui/AssemblySelector.d.ts +0 -13
- package/ui/AssemblySelector.js +0 -46
- package/ui/BaseTooltip.d.ts +0 -8
- package/ui/BaseTooltip.js +0 -46
- package/ui/CascadingMenu.d.ts +0 -9
- package/ui/CascadingMenu.js +0 -92
- package/ui/CascadingMenuButton.d.ts +0 -11
- package/ui/CascadingMenuButton.js +0 -29
- package/ui/ColorPicker.js +0 -101
- package/ui/DataGridFlexContainer.d.ts +0 -3
- package/ui/DataGridFlexContainer.js +0 -15
- package/ui/Dialog.d.ts +0 -7
- package/ui/Dialog.js +0 -50
- package/ui/DraggableDialog.js +0 -32
- package/ui/DropDownMenu.d.ts +0 -8
- package/ui/DropDownMenu.js +0 -37
- package/ui/EditableTypography.js +0 -72
- package/ui/ErrorBoundary.d.ts +0 -17
- package/ui/ErrorBoundary.js +0 -19
- package/ui/ErrorMessage.js +0 -94
- package/ui/ErrorMessageStackTraceDialog.js +0 -149
- package/ui/ExternalLink.js +0 -13
- package/ui/FactoryResetDialog.js +0 -24
- package/ui/FatalErrorDialog.js +0 -24
- package/ui/FileSelector/FileSelector.d.ts +0 -11
- package/ui/FileSelector/FileSelector.js +0 -102
- package/ui/FileSelector/LocalFileChooser.d.ts +0 -6
- package/ui/FileSelector/LocalFileChooser.js +0 -42
- package/ui/FileSelector/UrlChooser.d.ts +0 -8
- package/ui/FileSelector/UrlChooser.js +0 -19
- package/ui/FileSelector/index.d.ts +0 -1
- package/ui/FileSelector/index.js +0 -8
- package/ui/HoverMenu.js +0 -50
- package/ui/Icons.js +0 -23
- package/ui/LoadingEllipses.d.ts +0 -6
- package/ui/LoadingEllipses.js +0 -35
- package/ui/Logo.js +0 -46
- package/ui/Menu.d.ts +0 -53
- package/ui/Menu.js +0 -233
- package/ui/MenuButton.d.ts +0 -10
- package/ui/MenuButton.js +0 -28
- package/ui/PrerenderedCanvas.d.ts +0 -10
- package/ui/PrerenderedCanvas.js +0 -34
- package/ui/RedErrorMessageBox.js +0 -19
- package/ui/ResizeHandle.js +0 -72
- package/ui/ReturnToImportFormDialog.js +0 -18
- package/ui/SanitizedHTML.js +0 -64
- package/ui/Snackbar.d.ts +0 -10
- package/ui/Snackbar.js +0 -49
- package/ui/SnackbarContents.d.ts +0 -5
- package/ui/SnackbarContents.js +0 -16
- package/ui/SnackbarModel.d.ts +0 -17
- package/ui/SnackbarModel.js +0 -96
- package/ui/colors.js +0 -78
- package/ui/hooks.d.ts +0 -66
- package/ui/hooks.js +0 -185
- package/ui/index.d.ts +0 -19
- package/ui/index.js +0 -56
- package/ui/react-colorful.d.ts +0 -17
- package/ui/react-colorful.js +0 -466
- package/ui/theme.d.ts +0 -59
- package/ui/theme.js +0 -381
- package/ui/useEvent.js +0 -47
- package/util/Base1DUtils.d.ts +0 -38
- package/util/Base1DUtils.js +0 -198
- package/util/Base1DViewModel.d.ts +0 -61
- package/util/Base1DViewModel.js +0 -135
- package/util/QuickLRU.d.ts +0 -32
- package/util/QuickLRU.js +0 -237
- package/util/TimeTraveller.d.ts +0 -19
- package/util/TimeTraveller.js +0 -90
- package/util/aborting.js +0 -48
- package/util/analytics.js +0 -86
- package/util/blobToDataURL.js +0 -17
- package/util/blockTypes.d.ts +0 -58
- package/util/blockTypes.js +0 -110
- package/util/calculateDynamicBlocks.d.ts +0 -3
- package/util/calculateDynamicBlocks.js +0 -100
- package/util/calculateStaticBlocks.d.ts +0 -13
- package/util/calculateStaticBlocks.js +0 -102
- package/util/cluster.d.ts +0 -17
- package/util/cluster.js +0 -96
- package/util/color/cssColorsLevel4.js +0 -160
- package/util/color/index.d.ts +0 -4
- package/util/color/index.js +0 -40
- package/util/colord.d.ts +0 -1
- package/util/colord.js +0 -13
- package/util/compositeMap.d.ts +0 -11
- package/util/compositeMap.js +0 -61
- package/util/dedupe.js +0 -15
- package/util/formatFastaStrings.js +0 -12
- package/util/idMaker.js +0 -24
- package/util/index.d.ts +0 -274
- package/util/index.js +0 -1052
- package/util/io/RemoteFileWithRangeCache.js +0 -76
- package/util/io/index.d.ts +0 -7
- package/util/io/index.js +0 -103
- package/util/jexl.d.ts +0 -4
- package/util/jexl.js +0 -54
- package/util/jexlStrings.js +0 -23
- package/util/layouts/BaseLayout.d.ts +0 -30
- package/util/layouts/BaseLayout.js +0 -2
- package/util/layouts/GranularRectLayout.d.ts +0 -37
- package/util/layouts/GranularRectLayout.js +0 -343
- package/util/layouts/MultiLayout.d.ts +0 -12
- package/util/layouts/MultiLayout.js +0 -42
- package/util/layouts/PrecomputedLayout.d.ts +0 -28
- package/util/layouts/PrecomputedLayout.js +0 -66
- package/util/layouts/PrecomputedMultiLayout.d.ts +0 -4
- package/util/layouts/PrecomputedMultiLayout.js +0 -21
- package/util/layouts/SceneGraph.js +0 -115
- package/util/layouts/index.d.ts +0 -7
- package/util/layouts/index.js +0 -31
- package/util/makeAbortableReaction.d.ts +0 -2
- package/util/makeAbortableReaction.js +0 -50
- package/util/map-obj.d.ts +0 -3
- package/util/map-obj.js +0 -37
- package/util/mst-reflection.d.ts +0 -11
- package/util/mst-reflection.js +0 -62
- package/util/nanoid.d.ts +0 -5
- package/util/nanoid.js +0 -43
- package/util/nextTick.js +0 -6
- package/util/offscreenCanvasPonyfill.d.ts +0 -7
- package/util/offscreenCanvasPonyfill.js +0 -65
- package/util/offscreenCanvasUtils.d.ts +0 -28
- package/util/offscreenCanvasUtils.js +0 -99
- package/util/parseLineByLine.js +0 -25
- package/util/range.js +0 -26
- package/util/rxjs.d.ts +0 -3
- package/util/rxjs.js +0 -21
- package/util/simpleFeature.d.ts +0 -44
- package/util/simpleFeature.js +0 -82
- package/util/stats.d.ts +0 -21
- package/util/stats.js +0 -78
- package/util/stopToken.d.ts +0 -3
- package/util/stopToken.js +0 -29
- package/util/tracks.d.ts +0 -55
- package/util/tracks.js +0 -168
- package/util/types/index.d.ts +0 -254
- package/util/types/index.js +0 -172
- package/util/types/mst.d.ts +0 -107
- package/util/types/mst.js +0 -72
- package/util/types/util.d.ts +0 -6
- package/util/types/util.js +0 -2
- package/util/useMeasure.js +0 -33
- package/util/when.js +0 -5
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/ArrayValue.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/BasicValue.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/DataGridDetails.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/FieldName.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/SimpleField.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/UriField.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/util.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +0 -0
- /package/{PhasedScheduler.d.ts → esm/PhasedScheduler.d.ts} +0 -0
- /package/{ReExports → esm/ReExports}/BaseFeatureDetails.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/DataGrid.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/MuiDataGridReExports.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/lazify.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/list.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/modules.d.ts +0 -0
- /package/{data_adapters → esm/data_adapters}/util.d.ts +0 -0
- /package/{pluggableElementTypes → esm/pluggableElementTypes}/PluggableElementBase.d.ts +0 -0
- /package/{pluggableElementTypes → esm/pluggableElementTypes}/renderers/util/serializableFilterChain.d.ts +0 -0
- /package/{ui → esm/ui}/ColorPicker.d.ts +0 -0
- /package/{ui → esm/ui}/DraggableDialog.d.ts +0 -0
- /package/{ui → esm/ui}/EditableTypography.d.ts +0 -0
- /package/{ui → esm/ui}/ErrorMessage.d.ts +0 -0
- /package/{ui → esm/ui}/ErrorMessageStackTraceDialog.d.ts +0 -0
- /package/{ui → esm/ui}/ExternalLink.d.ts +0 -0
- /package/{ui → esm/ui}/FactoryResetDialog.d.ts +0 -0
- /package/{ui → esm/ui}/FatalErrorDialog.d.ts +0 -0
- /package/{ui → esm/ui}/HoverMenu.d.ts +0 -0
- /package/{ui → esm/ui}/Icons.d.ts +0 -0
- /package/{ui → esm/ui}/Logo.d.ts +0 -0
- /package/{ui → esm/ui}/RedErrorMessageBox.d.ts +0 -0
- /package/{ui → esm/ui}/ResizeHandle.d.ts +0 -0
- /package/{ui → esm/ui}/ReturnToImportFormDialog.d.ts +0 -0
- /package/{ui → esm/ui}/SanitizedHTML.d.ts +0 -0
- /package/{ui → esm/ui}/colors.d.ts +0 -0
- /package/{ui → esm/ui}/useEvent.d.ts +0 -0
- /package/{util → esm/util}/aborting.d.ts +0 -0
- /package/{util → esm/util}/analytics.d.ts +0 -0
- /package/{util → esm/util}/blobToDataURL.d.ts +0 -0
- /package/{util → esm/util}/color/cssColorsLevel4.d.ts +0 -0
- /package/{util → esm/util}/dedupe.d.ts +0 -0
- /package/{util → esm/util}/formatFastaStrings.d.ts +0 -0
- /package/{util → esm/util}/idMaker.d.ts +0 -0
- /package/{util → esm/util}/io/RemoteFileWithRangeCache.d.ts +0 -0
- /package/{util → esm/util}/jexlStrings.d.ts +0 -0
- /package/{util → esm/util}/layouts/SceneGraph.d.ts +0 -0
- /package/{util → esm/util}/nextTick.d.ts +0 -0
- /package/{util → esm/util}/parseLineByLine.d.ts +0 -0
- /package/{util → esm/util}/range.d.ts +0 -0
- /package/{util → esm/util}/useMeasure.d.ts +0 -0
- /package/{util → esm/util}/when.d.ts +0 -0
|
@@ -0,0 +1,77 @@
|
|
|
1
|
+
import { firstValueFrom } from 'rxjs';
|
|
2
|
+
import { toArray } from 'rxjs/operators';
|
|
3
|
+
import ServerSideRendererType from "./ServerSideRendererType.js";
|
|
4
|
+
import { normalizeRegion } from "./util.js";
|
|
5
|
+
import { isFeatureAdapter } from "../../data_adapters/BaseAdapter/index.js";
|
|
6
|
+
import { getAdapter } from "../../data_adapters/dataAdapterCache.js";
|
|
7
|
+
import { iterMap } from "../../util/index.js";
|
|
8
|
+
import SimpleFeature from "../../util/simpleFeature.js";
|
|
9
|
+
export default class FeatureRendererType extends ServerSideRendererType {
|
|
10
|
+
async renderDirect(args) {
|
|
11
|
+
const result = await super.renderDirect(args);
|
|
12
|
+
return {
|
|
13
|
+
...result,
|
|
14
|
+
blockKey: args.blockKey,
|
|
15
|
+
};
|
|
16
|
+
}
|
|
17
|
+
serializeArgsInClient(args) {
|
|
18
|
+
return super.serializeArgsInClient({
|
|
19
|
+
...args,
|
|
20
|
+
displayModel: undefined,
|
|
21
|
+
regions: structuredClone(args.regions),
|
|
22
|
+
});
|
|
23
|
+
}
|
|
24
|
+
deserializeResultsInClient(result, args) {
|
|
25
|
+
const deserializedFeatures = new Map(result.features
|
|
26
|
+
?.map(f => SimpleFeature.fromJSON(f))
|
|
27
|
+
.map(f => [f.id(), f]));
|
|
28
|
+
const deserialized = super.deserializeResultsInClient({
|
|
29
|
+
...result,
|
|
30
|
+
features: deserializedFeatures,
|
|
31
|
+
}, args);
|
|
32
|
+
return {
|
|
33
|
+
...deserialized,
|
|
34
|
+
blockKey: args.blockKey,
|
|
35
|
+
features: deserializedFeatures,
|
|
36
|
+
};
|
|
37
|
+
}
|
|
38
|
+
serializeResultsInWorker(result, args) {
|
|
39
|
+
const serialized = super.serializeResultsInWorker(result, args);
|
|
40
|
+
const { features } = result;
|
|
41
|
+
return {
|
|
42
|
+
...serialized,
|
|
43
|
+
features: features instanceof Map
|
|
44
|
+
? iterMap(features.values(), f => f.toJSON(), features.size)
|
|
45
|
+
: undefined,
|
|
46
|
+
};
|
|
47
|
+
}
|
|
48
|
+
getExpandedRegion(region, _renderArgs) {
|
|
49
|
+
return region;
|
|
50
|
+
}
|
|
51
|
+
async getFeatures(renderArgs) {
|
|
52
|
+
const pm = this.pluginManager;
|
|
53
|
+
const { regions, sessionId, adapterConfig } = renderArgs;
|
|
54
|
+
const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
|
|
55
|
+
if (!isFeatureAdapter(dataAdapter)) {
|
|
56
|
+
throw new Error('Adapter does not support retrieving features');
|
|
57
|
+
}
|
|
58
|
+
const requestRegions = regions.map(r => normalizeRegion(r));
|
|
59
|
+
const featureObservable = requestRegions.length === 1
|
|
60
|
+
? dataAdapter.getFeatures(this.getExpandedRegion(requestRegions[0], renderArgs), renderArgs)
|
|
61
|
+
: dataAdapter.getFeaturesInMultipleRegions(requestRegions, renderArgs);
|
|
62
|
+
const feats = await firstValueFrom(featureObservable.pipe(toArray()));
|
|
63
|
+
return new Map(feats
|
|
64
|
+
.filter(feat => this.featurePassesFilters(renderArgs, feat))
|
|
65
|
+
.map(feat => [feat.id(), feat]));
|
|
66
|
+
}
|
|
67
|
+
featurePassesFilters(renderArgs, feature) {
|
|
68
|
+
return renderArgs.filters
|
|
69
|
+
? renderArgs.filters.passes(feature, renderArgs)
|
|
70
|
+
: true;
|
|
71
|
+
}
|
|
72
|
+
async render(renderArgs) {
|
|
73
|
+
const features = await this.getFeatures(renderArgs);
|
|
74
|
+
const result = await super.render({ ...renderArgs, features });
|
|
75
|
+
return { ...result, features };
|
|
76
|
+
}
|
|
77
|
+
}
|
|
@@ -0,0 +1,31 @@
|
|
|
1
|
+
import GranularRectLayout from '../../util/layouts/GranularRectLayout.ts';
|
|
2
|
+
import MultiLayout from '../../util/layouts/MultiLayout.ts';
|
|
3
|
+
import type SerializableFilterChain from './util/serializableFilterChain.ts';
|
|
4
|
+
import type { AnyConfigurationModel } from '../../configuration/index.ts';
|
|
5
|
+
import type { Region } from '../../util/index.ts';
|
|
6
|
+
import type { BaseLayout } from '../../util/layouts/index.ts';
|
|
7
|
+
export interface LayoutSessionProps {
|
|
8
|
+
regions: Region[];
|
|
9
|
+
config: AnyConfigurationModel;
|
|
10
|
+
bpPerPx: number;
|
|
11
|
+
filters?: SerializableFilterChain;
|
|
12
|
+
}
|
|
13
|
+
export type BaseMultiLayout = MultiLayout<BaseLayout<unknown>, unknown>;
|
|
14
|
+
export type MyMultiLayout = MultiLayout<GranularRectLayout<unknown>, unknown>;
|
|
15
|
+
export interface CachedLayout {
|
|
16
|
+
layout: BaseMultiLayout;
|
|
17
|
+
props: LayoutSessionProps;
|
|
18
|
+
}
|
|
19
|
+
export interface LayoutSessionLike {
|
|
20
|
+
layout: BaseMultiLayout;
|
|
21
|
+
update(props: LayoutSessionProps): LayoutSessionLike;
|
|
22
|
+
}
|
|
23
|
+
export declare class LayoutSession implements LayoutSessionLike {
|
|
24
|
+
props: LayoutSessionProps;
|
|
25
|
+
cachedLayout: CachedLayout | undefined;
|
|
26
|
+
constructor(props: LayoutSessionProps);
|
|
27
|
+
update(props: LayoutSessionProps): this;
|
|
28
|
+
makeLayout(): MultiLayout<GranularRectLayout<unknown>, unknown>;
|
|
29
|
+
cachedLayoutIsValid(cachedLayout: CachedLayout): boolean;
|
|
30
|
+
get layout(): BaseMultiLayout;
|
|
31
|
+
}
|
|
@@ -0,0 +1,37 @@
|
|
|
1
|
+
import deepEqual from 'fast-deep-equal';
|
|
2
|
+
import { readConfObject } from "../../configuration/index.js";
|
|
3
|
+
import GranularRectLayout from "../../util/layouts/GranularRectLayout.js";
|
|
4
|
+
import MultiLayout from "../../util/layouts/MultiLayout.js";
|
|
5
|
+
export class LayoutSession {
|
|
6
|
+
props;
|
|
7
|
+
cachedLayout;
|
|
8
|
+
constructor(props) {
|
|
9
|
+
this.props = props;
|
|
10
|
+
}
|
|
11
|
+
update(props) {
|
|
12
|
+
this.props = props;
|
|
13
|
+
return this;
|
|
14
|
+
}
|
|
15
|
+
makeLayout() {
|
|
16
|
+
return new MultiLayout(GranularRectLayout, {
|
|
17
|
+
maxHeight: readConfObject(this.props.config, 'maxHeight'),
|
|
18
|
+
displayMode: readConfObject(this.props.config, 'displayMode'),
|
|
19
|
+
pitchX: this.props.bpPerPx,
|
|
20
|
+
pitchY: readConfObject(this.props.config, 'noSpacing') ? 1 : 3,
|
|
21
|
+
});
|
|
22
|
+
}
|
|
23
|
+
cachedLayoutIsValid(cachedLayout) {
|
|
24
|
+
return (cachedLayout.props.bpPerPx === this.props.bpPerPx &&
|
|
25
|
+
deepEqual(readConfObject(this.props.config), readConfObject(cachedLayout.props.config)) &&
|
|
26
|
+
deepEqual(this.props.filters, cachedLayout.props.filters));
|
|
27
|
+
}
|
|
28
|
+
get layout() {
|
|
29
|
+
if (!this.cachedLayout || !this.cachedLayoutIsValid(this.cachedLayout)) {
|
|
30
|
+
this.cachedLayout = {
|
|
31
|
+
layout: this.makeLayout(),
|
|
32
|
+
props: this.props,
|
|
33
|
+
};
|
|
34
|
+
}
|
|
35
|
+
return this.cachedLayout.layout;
|
|
36
|
+
}
|
|
37
|
+
}
|
|
@@ -0,0 +1,28 @@
|
|
|
1
|
+
import type React from 'react';
|
|
2
|
+
import PluggableElementBase from '../PluggableElementBase.ts';
|
|
3
|
+
import type PluginManager from '../../PluginManager.ts';
|
|
4
|
+
import type { AnyConfigurationSchemaType } from '../../configuration/index.ts';
|
|
5
|
+
import type { AnyReactComponentType } from '../../util/index.ts';
|
|
6
|
+
import type { RpcResult } from '../../util/librpc.ts';
|
|
7
|
+
export type RenderProps = Record<string, unknown>;
|
|
8
|
+
export interface RenderResults {
|
|
9
|
+
reactElement?: React.ReactElement;
|
|
10
|
+
html?: string;
|
|
11
|
+
[key: string]: unknown;
|
|
12
|
+
}
|
|
13
|
+
export type RenderReturn = RenderResults | RpcResult;
|
|
14
|
+
export default class RendererType extends PluggableElementBase {
|
|
15
|
+
ReactComponent: AnyReactComponentType;
|
|
16
|
+
supportsSVG: boolean;
|
|
17
|
+
configSchema: AnyConfigurationSchemaType;
|
|
18
|
+
pluginManager: PluginManager;
|
|
19
|
+
constructor(stuff: {
|
|
20
|
+
name: string;
|
|
21
|
+
ReactComponent: AnyReactComponentType;
|
|
22
|
+
displayName?: string;
|
|
23
|
+
configSchema: AnyConfigurationSchemaType;
|
|
24
|
+
pluginManager: PluginManager;
|
|
25
|
+
});
|
|
26
|
+
render(props: RenderProps): Promise<RenderReturn>;
|
|
27
|
+
freeResources(_args: any): void;
|
|
28
|
+
}
|
|
@@ -0,0 +1,20 @@
|
|
|
1
|
+
import { jsx as _jsx } from "react/jsx-runtime";
|
|
2
|
+
import PluggableElementBase from "../PluggableElementBase.js";
|
|
3
|
+
export default class RendererType extends PluggableElementBase {
|
|
4
|
+
ReactComponent;
|
|
5
|
+
supportsSVG = true;
|
|
6
|
+
configSchema;
|
|
7
|
+
pluginManager;
|
|
8
|
+
constructor(stuff) {
|
|
9
|
+
super(stuff);
|
|
10
|
+
this.ReactComponent = stuff.ReactComponent;
|
|
11
|
+
this.configSchema = stuff.configSchema;
|
|
12
|
+
this.pluginManager = stuff.pluginManager;
|
|
13
|
+
}
|
|
14
|
+
async render(props) {
|
|
15
|
+
return {
|
|
16
|
+
reactElement: _jsx(this.ReactComponent, { ...props }),
|
|
17
|
+
};
|
|
18
|
+
}
|
|
19
|
+
freeResources(_args) { }
|
|
20
|
+
}
|
|
@@ -0,0 +1,57 @@
|
|
|
1
|
+
import RendererType from './RendererType.tsx';
|
|
2
|
+
import SerializableFilterChain from './util/serializableFilterChain.ts';
|
|
3
|
+
import type { RenderProps, RenderResults } from './RendererType.tsx';
|
|
4
|
+
import type { SerializedFilterChain } from './util/serializableFilterChain.ts';
|
|
5
|
+
import type { AnyConfigurationModel } from '../../configuration/index.ts';
|
|
6
|
+
import type RpcManager from '../../rpc/RpcManager.ts';
|
|
7
|
+
import type { SnapshotIn, SnapshotOrInstance } from '@jbrowse/mobx-state-tree';
|
|
8
|
+
import type { ThemeOptions } from '@mui/material';
|
|
9
|
+
interface BaseRenderArgs extends RenderProps {
|
|
10
|
+
sessionId: string;
|
|
11
|
+
trackInstanceId: string;
|
|
12
|
+
stopToken?: string;
|
|
13
|
+
theme: ThemeOptions;
|
|
14
|
+
exportSVG?: {
|
|
15
|
+
rasterizeLayers?: boolean;
|
|
16
|
+
};
|
|
17
|
+
}
|
|
18
|
+
export interface RenderArgs extends BaseRenderArgs {
|
|
19
|
+
config: SnapshotOrInstance<AnyConfigurationModel>;
|
|
20
|
+
filters?: SerializableFilterChain;
|
|
21
|
+
renderingProps?: Record<string, unknown>;
|
|
22
|
+
}
|
|
23
|
+
export interface RenderArgsSerialized extends BaseRenderArgs {
|
|
24
|
+
statusCallback?: (arg: string) => void;
|
|
25
|
+
config: SnapshotIn<AnyConfigurationModel>;
|
|
26
|
+
filters?: SerializedFilterChain;
|
|
27
|
+
}
|
|
28
|
+
export interface RenderArgsDeserialized extends BaseRenderArgs {
|
|
29
|
+
config: AnyConfigurationModel;
|
|
30
|
+
filters?: SerializableFilterChain;
|
|
31
|
+
}
|
|
32
|
+
export type ResultsSerialized = Omit<RenderResults, 'reactElement'> & {
|
|
33
|
+
imageData?: ImageBitmap;
|
|
34
|
+
};
|
|
35
|
+
export interface ResultsSerializedSvgExport extends ResultsSerialized {
|
|
36
|
+
canvasRecordedData: unknown;
|
|
37
|
+
width: number;
|
|
38
|
+
height: number;
|
|
39
|
+
reactElement: unknown;
|
|
40
|
+
}
|
|
41
|
+
export type ResultsDeserialized = RenderResults;
|
|
42
|
+
export default class ServerSideRenderer extends RendererType {
|
|
43
|
+
renderDirect(args: RenderArgs): Promise<RenderResults | {
|
|
44
|
+
reactElement: import("react/jsx-runtime").JSX.Element | undefined;
|
|
45
|
+
html?: string;
|
|
46
|
+
}>;
|
|
47
|
+
serializeArgsInClient(args: RenderArgs): RenderArgsSerialized;
|
|
48
|
+
deserializeResultsInClient(res: ResultsSerialized, args: RenderArgs): ResultsDeserialized;
|
|
49
|
+
deserializeArgsInWorker(args: RenderArgsSerialized): RenderArgsDeserialized;
|
|
50
|
+
serializeResultsInWorker(results: RenderResults & {
|
|
51
|
+
imageData?: ImageBitmap;
|
|
52
|
+
}, _args: RenderArgsDeserialized): ResultsSerialized;
|
|
53
|
+
renderInClient(rpcManager: RpcManager, args: RenderArgs): Promise<ResultsSerialized>;
|
|
54
|
+
renderInWorker(args: RenderArgsSerialized): Promise<ResultsSerialized>;
|
|
55
|
+
freeResourcesInClient(rpcManager: RpcManager, args: RenderArgs): Promise<void>;
|
|
56
|
+
}
|
|
57
|
+
export { type RenderResults, type RenderReturn } from './RendererType.tsx';
|
|
@@ -0,0 +1,113 @@
|
|
|
1
|
+
import { jsx as _jsx } from "react/jsx-runtime";
|
|
2
|
+
import { getSnapshot, isStateTreeNode } from '@jbrowse/mobx-state-tree';
|
|
3
|
+
import RendererType from "./RendererType.js";
|
|
4
|
+
import SerializableFilterChain from "./util/serializableFilterChain.js";
|
|
5
|
+
import { getSerializedSvg, updateStatus } from "../../util/index.js";
|
|
6
|
+
import { isRpcResult } from "../../util/rpc.js";
|
|
7
|
+
import { checkStopToken } from "../../util/stopToken.js";
|
|
8
|
+
function isCanvasRecordedSvgExport(e) {
|
|
9
|
+
return 'canvasRecordedData' in e;
|
|
10
|
+
}
|
|
11
|
+
function hasPreRenderedContent(res) {
|
|
12
|
+
return !!res.html;
|
|
13
|
+
}
|
|
14
|
+
function createSvgExportElement(res, args, ReactComponent, supportsSVG) {
|
|
15
|
+
if (hasPreRenderedContent(res)) {
|
|
16
|
+
return undefined;
|
|
17
|
+
}
|
|
18
|
+
if (supportsSVG) {
|
|
19
|
+
return _jsx(ReactComponent, { ...args, ...res });
|
|
20
|
+
}
|
|
21
|
+
return (_jsx("text", { y: "12", fill: "black", children: "SVG export not supported for this track" }));
|
|
22
|
+
}
|
|
23
|
+
function createNormalElement(res, args, ReactComponent, renderingProps) {
|
|
24
|
+
return _jsx(ReactComponent, { ...args, ...res, ...renderingProps });
|
|
25
|
+
}
|
|
26
|
+
export default class ServerSideRenderer extends RendererType {
|
|
27
|
+
async renderDirect(args) {
|
|
28
|
+
const { renderingProps, ...rest } = args;
|
|
29
|
+
const config = isStateTreeNode(args.config)
|
|
30
|
+
? args.config
|
|
31
|
+
: this.configSchema.create(args.config || {}, {
|
|
32
|
+
pluginManager: this.pluginManager,
|
|
33
|
+
});
|
|
34
|
+
const results = await this.render({
|
|
35
|
+
...rest,
|
|
36
|
+
config,
|
|
37
|
+
});
|
|
38
|
+
if (isRpcResult(results)) {
|
|
39
|
+
const unwrapped = results.value;
|
|
40
|
+
return this.deserializeResultsInClient(unwrapped, args);
|
|
41
|
+
}
|
|
42
|
+
const { reactElement, ...resultRest } = results;
|
|
43
|
+
return {
|
|
44
|
+
...resultRest,
|
|
45
|
+
reactElement: args.exportSVG
|
|
46
|
+
? createSvgExportElement(resultRest, args, this.ReactComponent, this.supportsSVG)
|
|
47
|
+
: createNormalElement(resultRest, args, this.ReactComponent, renderingProps),
|
|
48
|
+
};
|
|
49
|
+
}
|
|
50
|
+
serializeArgsInClient(args) {
|
|
51
|
+
const { renderingProps, ...rest } = args;
|
|
52
|
+
return {
|
|
53
|
+
...rest,
|
|
54
|
+
config: isStateTreeNode(args.config)
|
|
55
|
+
? getSnapshot(args.config)
|
|
56
|
+
: args.config,
|
|
57
|
+
filters: args.filters?.toJSON().filters,
|
|
58
|
+
};
|
|
59
|
+
}
|
|
60
|
+
deserializeResultsInClient(res, args) {
|
|
61
|
+
const { renderingProps } = args;
|
|
62
|
+
return {
|
|
63
|
+
...res,
|
|
64
|
+
reactElement: args.exportSVG
|
|
65
|
+
? createSvgExportElement(res, args, this.ReactComponent, this.supportsSVG)
|
|
66
|
+
: createNormalElement(res, args, this.ReactComponent, renderingProps),
|
|
67
|
+
};
|
|
68
|
+
}
|
|
69
|
+
deserializeArgsInWorker(args) {
|
|
70
|
+
return {
|
|
71
|
+
...args,
|
|
72
|
+
config: this.configSchema.create(args.config || {}, {
|
|
73
|
+
pluginManager: this.pluginManager,
|
|
74
|
+
}),
|
|
75
|
+
filters: args.filters
|
|
76
|
+
? new SerializableFilterChain({ filters: args.filters })
|
|
77
|
+
: undefined,
|
|
78
|
+
};
|
|
79
|
+
}
|
|
80
|
+
serializeResultsInWorker(results, _args) {
|
|
81
|
+
const { reactElement, ...rest } = results;
|
|
82
|
+
return rest;
|
|
83
|
+
}
|
|
84
|
+
async renderInClient(rpcManager, args) {
|
|
85
|
+
const results = (await rpcManager.call(args.sessionId, 'CoreRender', args));
|
|
86
|
+
if (isCanvasRecordedSvgExport(results)) {
|
|
87
|
+
const { reactElement, ...rest } = results;
|
|
88
|
+
return {
|
|
89
|
+
...rest,
|
|
90
|
+
html: await getSerializedSvg(results),
|
|
91
|
+
};
|
|
92
|
+
}
|
|
93
|
+
else {
|
|
94
|
+
return results;
|
|
95
|
+
}
|
|
96
|
+
}
|
|
97
|
+
async renderInWorker(args) {
|
|
98
|
+
const { stopToken, statusCallback = () => { } } = args;
|
|
99
|
+
const args2 = this.deserializeArgsInWorker(args);
|
|
100
|
+
const results = await updateStatus('Rendering plot', statusCallback, () => this.render(args2));
|
|
101
|
+
checkStopToken(stopToken);
|
|
102
|
+
if (isRpcResult(results)) {
|
|
103
|
+
return results;
|
|
104
|
+
}
|
|
105
|
+
return updateStatus('Serializing results', statusCallback, () => this.serializeResultsInWorker(results, args2));
|
|
106
|
+
}
|
|
107
|
+
async freeResourcesInClient(rpcManager, args) {
|
|
108
|
+
const serializedArgs = this.serializeArgsInClient(args);
|
|
109
|
+
const { sessionId } = args;
|
|
110
|
+
await rpcManager.call(sessionId, 'CoreFreeResources', serializedArgs);
|
|
111
|
+
}
|
|
112
|
+
}
|
|
113
|
+
export {} from "./RendererType.js";
|
|
@@ -0,0 +1,6 @@
|
|
|
1
|
+
export { default as BoxRendererType } from './BoxRendererType.ts';
|
|
2
|
+
export { default as CircularChordRendererType } from './CircularChordRendererType.tsx';
|
|
3
|
+
export { default as RendererType } from './RendererType.tsx';
|
|
4
|
+
export { default as FeatureRendererType } from './FeatureRendererType.ts';
|
|
5
|
+
export { default as ServerSideRendererType } from './ServerSideRendererType.tsx';
|
|
6
|
+
export { type RenderProps } from './RendererType.tsx';
|
|
@@ -0,0 +1,6 @@
|
|
|
1
|
+
export { default as BoxRendererType } from "./BoxRendererType.js";
|
|
2
|
+
export { default as CircularChordRendererType } from "./CircularChordRendererType.js";
|
|
3
|
+
export { default as RendererType } from "./RendererType.js";
|
|
4
|
+
export { default as FeatureRendererType } from "./FeatureRendererType.js";
|
|
5
|
+
export { default as ServerSideRendererType } from "./ServerSideRendererType.js";
|
|
6
|
+
export {} from "./RendererType.js";
|
|
@@ -0,0 +1,30 @@
|
|
|
1
|
+
import { stringToJexlExpression } from "../../../util/jexlStrings.js";
|
|
2
|
+
export default class SerializableFilterChain {
|
|
3
|
+
filterChain;
|
|
4
|
+
constructor({ filters }) {
|
|
5
|
+
this.filterChain = filters
|
|
6
|
+
.map(f => f.trim())
|
|
7
|
+
.filter(f => !!f)
|
|
8
|
+
.map(inputFilter => {
|
|
9
|
+
if (typeof inputFilter === 'string') {
|
|
10
|
+
const expr = stringToJexlExpression(inputFilter);
|
|
11
|
+
return { expr, string: inputFilter };
|
|
12
|
+
}
|
|
13
|
+
throw new Error(`invalid inputFilter string "${inputFilter}"`);
|
|
14
|
+
});
|
|
15
|
+
}
|
|
16
|
+
passes(...args) {
|
|
17
|
+
for (const entry of this.filterChain) {
|
|
18
|
+
if (!entry.expr.eval({ feature: args[0] })) {
|
|
19
|
+
return false;
|
|
20
|
+
}
|
|
21
|
+
}
|
|
22
|
+
return true;
|
|
23
|
+
}
|
|
24
|
+
toJSON() {
|
|
25
|
+
return { filters: this.filterChain.map(f => f.string) };
|
|
26
|
+
}
|
|
27
|
+
static fromJSON(json) {
|
|
28
|
+
return new SerializableFilterChain(json);
|
|
29
|
+
}
|
|
30
|
+
}
|
|
@@ -0,0 +1,14 @@
|
|
|
1
|
+
export function normalizeRegion(region) {
|
|
2
|
+
return {
|
|
3
|
+
...region,
|
|
4
|
+
start: Math.floor(region.start),
|
|
5
|
+
end: Math.ceil(region.end),
|
|
6
|
+
};
|
|
7
|
+
}
|
|
8
|
+
export function expandRegion(region, bpExpansion) {
|
|
9
|
+
return {
|
|
10
|
+
...region,
|
|
11
|
+
start: Math.floor(Math.max(region.start - bpExpansion, 0)),
|
|
12
|
+
end: Math.ceil(region.end + bpExpansion),
|
|
13
|
+
};
|
|
14
|
+
}
|
|
@@ -0,0 +1,40 @@
|
|
|
1
|
+
import type PluginManager from '../PluginManager.ts';
|
|
2
|
+
import type { AnyConfigurationModel } from '../configuration/index.ts';
|
|
3
|
+
export interface WorkerHandle {
|
|
4
|
+
status?: string;
|
|
5
|
+
error?: unknown;
|
|
6
|
+
on?: (channel: string, callback: (message: unknown) => void) => void;
|
|
7
|
+
off?: (channel: string, callback: (message: unknown) => void) => void;
|
|
8
|
+
destroy(): void;
|
|
9
|
+
call(functionName: string, args?: unknown, options?: {
|
|
10
|
+
statusCallback?(message: string): void;
|
|
11
|
+
rpcDriverClassName: string;
|
|
12
|
+
}): Promise<unknown>;
|
|
13
|
+
}
|
|
14
|
+
export interface RpcDriverConstructorArgs {
|
|
15
|
+
config: AnyConfigurationModel;
|
|
16
|
+
}
|
|
17
|
+
declare class LazyWorker {
|
|
18
|
+
driver: BaseRpcDriver;
|
|
19
|
+
workerP?: Promise<WorkerHandle> | undefined;
|
|
20
|
+
constructor(driver: BaseRpcDriver);
|
|
21
|
+
getWorker(): Promise<WorkerHandle>;
|
|
22
|
+
}
|
|
23
|
+
export default abstract class BaseRpcDriver {
|
|
24
|
+
abstract name: string;
|
|
25
|
+
private lastWorkerAssignment;
|
|
26
|
+
private workerAssignments;
|
|
27
|
+
abstract makeWorker(): Promise<WorkerHandle>;
|
|
28
|
+
private workerPool?;
|
|
29
|
+
config: AnyConfigurationModel;
|
|
30
|
+
constructor(args: RpcDriverConstructorArgs);
|
|
31
|
+
filterArgs<THING_TYPE>(thing: THING_TYPE, sessionId: string): THING_TYPE;
|
|
32
|
+
remoteAbort(sessionId: string, functionName: string, stopTokenId: number): Promise<void>;
|
|
33
|
+
createWorkerPool(): LazyWorker[];
|
|
34
|
+
getWorkerPool(): LazyWorker[];
|
|
35
|
+
getWorker(sessionId: string): Promise<WorkerHandle>;
|
|
36
|
+
call(pluginManager: PluginManager, sessionId: string, functionName: string, args: {
|
|
37
|
+
statusCallback?: (message: unknown) => void;
|
|
38
|
+
}, options?: {}): Promise<unknown>;
|
|
39
|
+
}
|
|
40
|
+
export {};
|
|
@@ -0,0 +1,116 @@
|
|
|
1
|
+
import { isAlive, isStateTreeNode } from '@jbrowse/mobx-state-tree';
|
|
2
|
+
import { readConfObject } from "../configuration/index.js";
|
|
3
|
+
import { clamp } from "../util/index.js";
|
|
4
|
+
function isCloneable(thing) {
|
|
5
|
+
return !(typeof thing === 'function') && !(thing instanceof Error);
|
|
6
|
+
}
|
|
7
|
+
function detectHardwareConcurrency() {
|
|
8
|
+
const mainThread = typeof window !== 'undefined';
|
|
9
|
+
const canDetect = mainThread && 'hardwareConcurrency' in window.navigator;
|
|
10
|
+
return mainThread && canDetect ? window.navigator.hardwareConcurrency : 1;
|
|
11
|
+
}
|
|
12
|
+
class LazyWorker {
|
|
13
|
+
driver;
|
|
14
|
+
workerP;
|
|
15
|
+
constructor(driver) {
|
|
16
|
+
this.driver = driver;
|
|
17
|
+
}
|
|
18
|
+
async getWorker() {
|
|
19
|
+
if (!this.workerP) {
|
|
20
|
+
this.workerP = this.driver.makeWorker().catch((e) => {
|
|
21
|
+
this.workerP = undefined;
|
|
22
|
+
throw e;
|
|
23
|
+
});
|
|
24
|
+
}
|
|
25
|
+
return this.workerP;
|
|
26
|
+
}
|
|
27
|
+
}
|
|
28
|
+
export default class BaseRpcDriver {
|
|
29
|
+
lastWorkerAssignment = -1;
|
|
30
|
+
workerAssignments = new Map();
|
|
31
|
+
workerPool;
|
|
32
|
+
config;
|
|
33
|
+
constructor(args) {
|
|
34
|
+
this.config = args.config;
|
|
35
|
+
}
|
|
36
|
+
filterArgs(thing, sessionId) {
|
|
37
|
+
if (thing === null || thing === undefined) {
|
|
38
|
+
return thing;
|
|
39
|
+
}
|
|
40
|
+
const type = typeof thing;
|
|
41
|
+
if (type === 'string' || type === 'number' || type === 'boolean') {
|
|
42
|
+
return thing;
|
|
43
|
+
}
|
|
44
|
+
if (type !== 'object') {
|
|
45
|
+
return undefined;
|
|
46
|
+
}
|
|
47
|
+
if (Array.isArray(thing)) {
|
|
48
|
+
return thing
|
|
49
|
+
.filter(thing => isCloneable(thing))
|
|
50
|
+
.map(t => this.filterArgs(t, sessionId));
|
|
51
|
+
}
|
|
52
|
+
else if (isStateTreeNode(thing) && !isAlive(thing)) {
|
|
53
|
+
throw new Error('dead state tree node passed to RPC call');
|
|
54
|
+
}
|
|
55
|
+
else if (thing instanceof File) {
|
|
56
|
+
return thing;
|
|
57
|
+
}
|
|
58
|
+
else {
|
|
59
|
+
return Object.fromEntries(Object.entries(thing)
|
|
60
|
+
.filter(e => isCloneable(e[1]))
|
|
61
|
+
.map(([k, v]) => [k, this.filterArgs(v, sessionId)]));
|
|
62
|
+
}
|
|
63
|
+
}
|
|
64
|
+
async remoteAbort(sessionId, functionName, stopTokenId) {
|
|
65
|
+
const worker = await this.getWorker(sessionId);
|
|
66
|
+
await worker.call(functionName, { stopTokenId }, { rpcDriverClassName: this.name });
|
|
67
|
+
}
|
|
68
|
+
createWorkerPool() {
|
|
69
|
+
const hardwareConcurrency = detectHardwareConcurrency();
|
|
70
|
+
const workerCount = readConfObject(this.config, 'workerCount') ||
|
|
71
|
+
clamp(1, Math.max(1, hardwareConcurrency - 1), 5);
|
|
72
|
+
const workers = [];
|
|
73
|
+
for (let i = 0; i < workerCount; i++) {
|
|
74
|
+
workers.push(new LazyWorker(this));
|
|
75
|
+
}
|
|
76
|
+
return workers;
|
|
77
|
+
}
|
|
78
|
+
getWorkerPool() {
|
|
79
|
+
if (!this.workerPool) {
|
|
80
|
+
const res = this.createWorkerPool();
|
|
81
|
+
this.workerPool = res;
|
|
82
|
+
return res;
|
|
83
|
+
}
|
|
84
|
+
return this.workerPool;
|
|
85
|
+
}
|
|
86
|
+
async getWorker(sessionId) {
|
|
87
|
+
const workers = this.getWorkerPool();
|
|
88
|
+
let workerNumber = this.workerAssignments.get(sessionId);
|
|
89
|
+
if (workerNumber === undefined) {
|
|
90
|
+
const workerAssignment = (this.lastWorkerAssignment + 1) % workers.length;
|
|
91
|
+
this.workerAssignments.set(sessionId, workerAssignment);
|
|
92
|
+
this.lastWorkerAssignment = workerAssignment;
|
|
93
|
+
workerNumber = workerAssignment;
|
|
94
|
+
}
|
|
95
|
+
return workers[workerNumber].getWorker();
|
|
96
|
+
}
|
|
97
|
+
async call(pluginManager, sessionId, functionName, args, options = {}) {
|
|
98
|
+
if (!sessionId) {
|
|
99
|
+
throw new TypeError('sessionId is required');
|
|
100
|
+
}
|
|
101
|
+
const unextendedWorker = await this.getWorker(sessionId);
|
|
102
|
+
const worker = pluginManager.evaluateExtensionPoint('Core-extendWorker', unextendedWorker);
|
|
103
|
+
const rpcMethod = pluginManager.getRpcMethodType(functionName);
|
|
104
|
+
if (!rpcMethod) {
|
|
105
|
+
throw new Error(`unknown RPC method ${functionName}`);
|
|
106
|
+
}
|
|
107
|
+
const serializedArgs = await rpcMethod.serializeArguments(args, this.name);
|
|
108
|
+
const filteredAndSerializedArgs = this.filterArgs(serializedArgs, sessionId);
|
|
109
|
+
const call = await worker.call(functionName, filteredAndSerializedArgs, {
|
|
110
|
+
statusCallback: args.statusCallback,
|
|
111
|
+
rpcDriverClassName: this.name,
|
|
112
|
+
...options,
|
|
113
|
+
});
|
|
114
|
+
return rpcMethod.deserializeReturn(call, args, this.name);
|
|
115
|
+
}
|
|
116
|
+
}
|
|
@@ -0,0 +1,14 @@
|
|
|
1
|
+
import BaseRpcDriver from './BaseRpcDriver.ts';
|
|
2
|
+
import type { RpcDriverConstructorArgs } from './BaseRpcDriver.ts';
|
|
3
|
+
import type PluginManager from '../PluginManager.ts';
|
|
4
|
+
declare class DummyHandle {
|
|
5
|
+
destroy(): void;
|
|
6
|
+
call(_functionName: string, _filteredArgs?: Record<string, unknown>, _options?: {}): Promise<unknown>;
|
|
7
|
+
}
|
|
8
|
+
export default class MainThreadRpcDriver extends BaseRpcDriver {
|
|
9
|
+
name: string;
|
|
10
|
+
makeWorker: () => Promise<DummyHandle>;
|
|
11
|
+
constructor(args: RpcDriverConstructorArgs);
|
|
12
|
+
call(pm: PluginManager, sessionId: string, funcName: string, args: Record<string, unknown>): Promise<unknown>;
|
|
13
|
+
}
|
|
14
|
+
export {};
|
|
@@ -0,0 +1,33 @@
|
|
|
1
|
+
import BaseRpcDriver from "./BaseRpcDriver.js";
|
|
2
|
+
class DummyHandle {
|
|
3
|
+
destroy() { }
|
|
4
|
+
async call(_functionName, _filteredArgs, _options = {}) {
|
|
5
|
+
return undefined;
|
|
6
|
+
}
|
|
7
|
+
}
|
|
8
|
+
export default class MainThreadRpcDriver extends BaseRpcDriver {
|
|
9
|
+
name = 'MainThreadRpcDriver';
|
|
10
|
+
makeWorker;
|
|
11
|
+
constructor(args) {
|
|
12
|
+
super(args);
|
|
13
|
+
this.makeWorker = async () => new DummyHandle();
|
|
14
|
+
}
|
|
15
|
+
async call(pm, sessionId, funcName, args) {
|
|
16
|
+
if (!sessionId) {
|
|
17
|
+
throw new TypeError('sessionId is required');
|
|
18
|
+
}
|
|
19
|
+
const rpcMethod = pm.getRpcMethodType(funcName);
|
|
20
|
+
if (!rpcMethod) {
|
|
21
|
+
throw new Error(`unknown RPC method ${funcName}`);
|
|
22
|
+
}
|
|
23
|
+
if (rpcMethod.supportsDirectExecution()) {
|
|
24
|
+
const result = await rpcMethod.executeDirect(args);
|
|
25
|
+
if (result !== undefined) {
|
|
26
|
+
return result;
|
|
27
|
+
}
|
|
28
|
+
}
|
|
29
|
+
const serializedArgs = await rpcMethod.serializeArguments(args, this.name);
|
|
30
|
+
const result = await rpcMethod.execute(serializedArgs, this.name);
|
|
31
|
+
return rpcMethod.deserializeReturn(result, args, this.name);
|
|
32
|
+
}
|
|
33
|
+
}
|