@jbrowse/core 2.0.1 → 2.1.0

package/pluggableElementTypes/renderers/declare.d.js

@@ -1 +0,0 @@
-"use strict";

package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js

@@ -1,20 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _serializableFilterChain = _interopRequireDefault(require("./serializableFilterChain"));
-
-test('one', function () {
-  var c = new _serializableFilterChain.default({
-    filters: ["jexl:feature.y == 2"]
-  });
-  expect(c.passes({
-    y: 1
-  })).toBe(false);
-  expect(c.passes({
-    y: 2
-  })).toBe(true);
-  expect(c.toJSON()).toEqual({
-    filters: ['jexl:feature.y == 2']
-  });
-});

package/rpc/BaseRpcDriver.test.js

@@ -1,540 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _typeof = require("@babel/runtime/helpers/typeof");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.MockRendererTimeout = exports.MockRendererShort = void 0;
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _PluginManager = _interopRequireDefault(require("../PluginManager"));
-
-var _util = require("../util");
-
-var _BaseRpcDriver2 = _interopRequireWildcard(require("./BaseRpcDriver"));
-
-var _RpcMethodType3 = _interopRequireDefault(require("../pluggableElementTypes/RpcMethodType"));
-
-var _configuration = require("../configuration");
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-function timeout(ms) {
-  return new Promise(function (resolve) {
-    setTimeout(function () {
-      resolve(true);
-    }, ms);
-  });
-}
-
-var MockWorkerHandle = /*#__PURE__*/function () {
-  function MockWorkerHandle() {
-    (0, _classCallCheck2.default)(this, MockWorkerHandle);
-    (0, _defineProperty2.default)(this, "busy", false);
-  }
-
-  (0, _createClass2.default)(MockWorkerHandle, [{
-    key: "destroy",
-    value: function destroy() {}
-  }, {
-    key: "call",
-    value: function () {
-      var _call = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(name) {
-        var _args,
-            opts,
-            start,
-            _args2 = arguments;
-
-        return _regenerator.default.wrap(function _callee$(_context) {
-          while (1) {
-            switch (_context.prev = _context.next) {
-              case 0:
-                _args = _args2.length > 1 && _args2[1] !== undefined ? _args2[1] : [];
-                opts = _args2.length > 2 && _args2[2] !== undefined ? _args2[2] : {
-                  timeout: 3000,
-                  rpcDriverClassName: 'MockRpcDriver'
-                };
-                start = Date.now();
-
-                if (!(name === 'ping')) {
-                  _context.next = 13;
-                  break;
-                }
-
-              case 4:
-                if (!this.busy) {
-                  _context.next = 11;
-                  break;
-                }
-
-                if (!(opts.timeout < +Date.now() - start)) {
-                  _context.next = 7;
-                  break;
-                }
-
-                throw new Error('timeout');
-
-              case 7:
-                _context.next = 9;
-                return timeout(50);
-
-              case 9:
-                _context.next = 4;
-                break;
-
-              case 11:
-                _context.next = 61;
-                break;
-
-              case 13:
-                if (!(name === 'doWorkShortPingTime')) {
-                  _context.next = 32;
-                  break;
-                }
-
-                this.busy = true;
-                _context.next = 17;
-                return timeout(50);
-
-              case 17:
-                this.busy = false;
-                _context.next = 20;
-                return timeout(50);
-
-              case 20:
-                this.busy = true;
-                _context.next = 23;
-                return timeout(50);
-
-              case 23:
-                this.busy = false;
-                _context.next = 26;
-                return timeout(50);
-
-              case 26:
-                this.busy = true;
-                _context.next = 29;
-                return timeout(50);
-
-              case 29:
-                this.busy = false;
-                _context.next = 61;
-                break;
-
-              case 32:
-                if (!(name === 'doWorkLongPingTime')) {
-                  _context.next = 48;
-                  break;
-                }
-
-                this.busy = true;
-                _context.next = 36;
-                return timeout(1000);
-
-              case 36:
-                (0, _util.checkAbortSignal)(opts.signal);
-                this.busy = false;
-                _context.next = 40;
-                return timeout(1000);
-
-              case 40:
-                (0, _util.checkAbortSignal)(opts.signal);
-                this.busy = true;
-                _context.next = 44;
-                return timeout(1000);
-
-              case 44:
-                (0, _util.checkAbortSignal)(opts.signal);
-                this.busy = false;
-                _context.next = 61;
-                break;
-
-              case 48:
-                if (!(name === 'MockRenderTimeout')) {
-                  _context.next = 55;
-                  break;
-                }
-
-                this.busy = true;
-                _context.next = 52;
-                return timeout(10000);
-
-              case 52:
-                this.busy = false;
-                _context.next = 61;
-                break;
-
-              case 55:
-                if (!(name === 'MockRenderShort')) {
-                  _context.next = 61;
-                  break;
-                }
-
-                this.busy = true;
-                _context.next = 59;
-                return timeout(100);
-
-              case 59:
-                (0, _util.checkAbortSignal)(opts.signal);
-                this.busy = false;
-
-              case 61:
-              case "end":
-                return _context.stop();
-            }
-          }
-        }, _callee, this);
-      }));
-
-      function call(_x) {
-        return _call.apply(this, arguments);
-      }
-
-      return call;
-    }()
-  }]);
-  return MockWorkerHandle;
-}();
-
-test('watch worker with long ping, generates timeout', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
-  var worker, workerWatcher, result;
-  return _regenerator.default.wrap(function _callee2$(_context2) {
-    while (1) {
-      switch (_context2.prev = _context2.next) {
-        case 0:
-          worker = new MockWorkerHandle();
-          expect.assertions(1);
-          _context2.prev = 2;
-          workerWatcher = (0, _BaseRpcDriver2.watchWorker)(worker, 200, 'MockRpcDriver');
-          result = worker.call('doWorkLongPingTime', undefined, {
-            timeout: 100,
-            rpcDriverClassName: 'MockRpcDriver'
-          });
-          _context2.next = 7;
-          return Promise.race([result, workerWatcher]);
-
-        case 7:
-          _context2.next = 12;
-          break;
-
-        case 9:
-          _context2.prev = 9;
-          _context2.t0 = _context2["catch"](2);
-          expect("".concat(_context2.t0)).toMatch(/timeout/);
-
-        case 12:
-        case "end":
-          return _context2.stop();
-      }
-    }
-  }, _callee2, null, [[2, 9]]);
-})));
-test('test worker abort', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
-  var worker, controller, resultP;
-  return _regenerator.default.wrap(function _callee3$(_context3) {
-    while (1) {
-      switch (_context3.prev = _context3.next) {
-        case 0:
-          worker = new MockWorkerHandle();
-          expect.assertions(1);
-          _context3.prev = 2;
-          controller = new AbortController();
-          resultP = worker.call('doWorkLongPingTime', undefined, {
-            signal: controller.signal,
-            timeout: 2000,
-            rpcDriverClassName: 'MockRpcDriver'
-          });
-          controller.abort();
-          _context3.next = 8;
-          return resultP;
-
-        case 8:
-          _context3.next = 13;
-          break;
-
-        case 10:
-          _context3.prev = 10;
-          _context3.t0 = _context3["catch"](2);
-          expect("".concat(_context3.t0)).toMatch(/abort/);
-
-        case 13:
-        case "end":
-          return _context3.stop();
-      }
-    }
-  }, _callee3, null, [[2, 10]]);
-})));
-test('watch worker generates multiple pings', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4() {
-  var worker, workerWatcher, result;
-  return _regenerator.default.wrap(function _callee4$(_context4) {
-    while (1) {
-      switch (_context4.prev = _context4.next) {
-        case 0:
-          worker = new MockWorkerHandle();
-          workerWatcher = (0, _BaseRpcDriver2.watchWorker)(worker, 200, 'MockRpcDriver');
-          result = worker.call('doWorkShortPingTime');
-          _context4.next = 5;
-          return Promise.race([result, workerWatcher]);
-
-        case 5:
-        case "end":
-          return _context4.stop();
-      }
-    }
-  }, _callee4);
-})));
-
-var MockRpcDriver = /*#__PURE__*/function (_BaseRpcDriver) {
-  (0, _inherits2.default)(MockRpcDriver, _BaseRpcDriver);
-
-  var _super = _createSuper(MockRpcDriver);
-
-  function MockRpcDriver() {
-    var _this;
-
-    (0, _classCallCheck2.default)(this, MockRpcDriver);
-
-    for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
-      args[_key] = arguments[_key];
-    }
-
-    _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'MockRpcDriver');
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "maxPingTime", 1000);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "workerCheckFrequency", 500);
-    return _this;
-  }
-
-  (0, _createClass2.default)(MockRpcDriver, [{
-    key: "makeWorker",
-    value: function () {
-      var _makeWorker = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5() {
-        return _regenerator.default.wrap(function _callee5$(_context5) {
-          while (1) {
-            switch (_context5.prev = _context5.next) {
-              case 0:
-                return _context5.abrupt("return", new MockWorkerHandle());
-
-              case 1:
-              case "end":
-                return _context5.stop();
-            }
-          }
-        }, _callee5);
-      }));
-
-      function makeWorker() {
-        return _makeWorker.apply(this, arguments);
-      }
-
-      return makeWorker;
-    }()
-  }]);
-  return MockRpcDriver;
-}(_BaseRpcDriver2.default);
-
-var MockRendererTimeout = /*#__PURE__*/function (_RpcMethodType) {
-  (0, _inherits2.default)(MockRendererTimeout, _RpcMethodType);
-
-  var _super2 = _createSuper(MockRendererTimeout);
-
-  function MockRendererTimeout() {
-    var _this2;
-
-    (0, _classCallCheck2.default)(this, MockRendererTimeout);
-
-    for (var _len2 = arguments.length, args = new Array(_len2), _key2 = 0; _key2 < _len2; _key2++) {
-      args[_key2] = arguments[_key2];
-    }
-
-    _this2 = _super2.call.apply(_super2, [this].concat(args));
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this2), "name", 'MockRenderTimeout');
-    return _this2;
-  }
-
-  (0, _createClass2.default)(MockRendererTimeout, [{
-    key: "execute",
-    value: function () {
-      var _execute = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6() {
-        return _regenerator.default.wrap(function _callee6$(_context6) {
-          while (1) {
-            switch (_context6.prev = _context6.next) {
-              case 0:
-              case "end":
-                return _context6.stop();
-            }
-          }
-        }, _callee6);
-      }));
-
-      function execute() {
-        return _execute.apply(this, arguments);
-      }
-
-      return execute;
-    }()
-  }]);
-  return MockRendererTimeout;
-}(_RpcMethodType3.default);
-
-exports.MockRendererTimeout = MockRendererTimeout;
-
-var MockRendererShort = /*#__PURE__*/function (_RpcMethodType2) {
-  (0, _inherits2.default)(MockRendererShort, _RpcMethodType2);
-
-  var _super3 = _createSuper(MockRendererShort);
-
-  function MockRendererShort() {
-    var _this3;
-
-    (0, _classCallCheck2.default)(this, MockRendererShort);
-
-    for (var _len3 = arguments.length, args = new Array(_len3), _key3 = 0; _key3 < _len3; _key3++) {
-      args[_key3] = arguments[_key3];
-    }
-
-    _this3 = _super3.call.apply(_super3, [this].concat(args));
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this3), "name", 'MockRenderShort');
-    return _this3;
-  }
-
-  (0, _createClass2.default)(MockRendererShort, [{
-    key: "execute",
-    value: function () {
-      var _execute2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee7() {
-        return _regenerator.default.wrap(function _callee7$(_context7) {
-          while (1) {
-            switch (_context7.prev = _context7.next) {
-              case 0:
-              case "end":
-                return _context7.stop();
-            }
-          }
-        }, _callee7);
-      }));
-
-      function execute() {
-        return _execute2.apply(this, arguments);
-      }
-
-      return execute;
-    }()
-  }]);
-  return MockRendererShort;
-}(_RpcMethodType3.default);
-
-exports.MockRendererShort = MockRendererShort;
-test('test RPC driver operation timeout and worker replace', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee8() {
-  var config, driver, pluginManager;
-  return _regenerator.default.wrap(function _callee8$(_context8) {
-    while (1) {
-      switch (_context8.prev = _context8.next) {
-        case 0:
-          console.error = jest.fn();
-          console.warn = jest.fn();
-          expect.assertions(1);
-          config = (0, _configuration.ConfigurationSchema)('Mock', {}).create();
-          driver = new MockRpcDriver({
-            config: config
-          });
-          pluginManager = new _PluginManager.default();
-          pluginManager.addRpcMethod(function () {
-            return new MockRendererTimeout(pluginManager);
-          });
-          pluginManager.addRpcMethod(function () {
-            return new MockRendererShort(pluginManager);
-          });
-          pluginManager.createPluggableElements();
-          _context8.prev = 9;
-          _context8.next = 12;
-          return driver.call(pluginManager, 'sessionId', 'MockRenderTimeout', {}, {});
-
-        case 12:
-          _context8.next = 17;
-          break;
-
-        case 14:
-          _context8.prev = 14;
-          _context8.t0 = _context8["catch"](9);
-          expect("".concat(_context8.t0)).toMatch(/operation timed out/);
-
-        case 17:
-          _context8.next = 19;
-          return driver.call(pluginManager, 'sessionId', 'MockRenderShort', {}, {});
-
-        case 19:
-        case "end":
-          return _context8.stop();
-      }
-    }
-  }, _callee8, null, [[9, 14]]);
-})));
-test('remote abort', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee9() {
-  var config, driver, pluginManager, controller, resP;
-  return _regenerator.default.wrap(function _callee9$(_context9) {
-    while (1) {
-      switch (_context9.prev = _context9.next) {
-        case 0:
-          console.error = jest.fn();
-          console.warn = jest.fn();
-          expect.assertions(1);
-          config = (0, _configuration.ConfigurationSchema)('Mock', {}).create();
-          driver = new MockRpcDriver({
-            config: config
-          });
-          pluginManager = new _PluginManager.default();
-          pluginManager.addRpcMethod(function () {
-            return new MockRendererShort(pluginManager);
-          });
-          pluginManager.createPluggableElements();
-          _context9.prev = 8;
-          controller = new AbortController();
-          resP = driver.call(pluginManager, 'sessionId', 'MockRenderShort', {}, {
-            signal: controller.signal
-          });
-          controller.abort();
-          _context9.next = 14;
-          return resP;
-
-        case 14:
-          _context9.next = 19;
-          break;
-
-        case 16:
-          _context9.prev = 16;
-          _context9.t0 = _context9["catch"](8);
-          expect("".concat(_context9.t0)).toMatch(/abort/);
-
-        case 19:
-        case "end":
-          return _context9.stop();
-      }
-    }
-  }, _callee9, null, [[8, 16]]);
-})));

package/rpc/declaration.d.js

@@ -1 +0,0 @@
-"use strict";

package/ui/FatalErrorDialog.test.js

@@ -1,82 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-require("@testing-library/jest-dom/extend-expect");
-
-var _react = require("@testing-library/react");
-
-var _react2 = _interopRequireDefault(require("react"));
-
-var _FatalErrorDialog = _interopRequireDefault(require("./FatalErrorDialog"));
-
-afterEach(_react.cleanup);
-test('open fatal error dialog in web', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
-  var _render, findByTestId, getByText;
-
-  return _regenerator.default.wrap(function _callee$(_context) {
-    while (1) {
-      switch (_context.prev = _context.next) {
-        case 0:
-          console.error = jest.fn();
-          _render = (0, _react.render)( /*#__PURE__*/_react2.default.createElement(_FatalErrorDialog.default, {
-            resetButtonText: "Reset Session",
-            onFactoryReset: function onFactoryReset() {
-              return /*#__PURE__*/_react2.default.createElement("div", null, "Placeholder for actual factory reset func");
-            }
-          })), findByTestId = _render.findByTestId, getByText = _render.getByText;
-          expect(getByText('Reset Session')).toBeTruthy();
-          _context.t0 = _react.fireEvent;
-          _context.next = 6;
-          return findByTestId('fatal-error');
-
-        case 6:
-          _context.t1 = _context.sent;
-
-          _context.t0.click.call(_context.t0, _context.t1);
-
-          expect(getByText('Are you sure you want to reset? This will restore the default configuration.')).toBeTruthy();
-
-        case 9:
-        case "end":
-          return _context.stop();
-      }
-    }
-  }, _callee);
-})));
-test('open fatal error dialog in desktop', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
-  var _render2, findByTestId, getByText;
-
-  return _regenerator.default.wrap(function _callee2$(_context2) {
-    while (1) {
-      switch (_context2.prev = _context2.next) {
-        case 0:
-          console.error = jest.fn();
-          _render2 = (0, _react.render)( /*#__PURE__*/_react2.default.createElement(_FatalErrorDialog.default, {
-            onFactoryReset: function onFactoryReset() {
-              return /*#__PURE__*/_react2.default.createElement("div", null, "Placeholder for actual factory reset func");
-            }
-          })), findByTestId = _render2.findByTestId, getByText = _render2.getByText;
-          expect(getByText('Factory Reset')).toBeTruthy();
-          _context2.t0 = _react.fireEvent;
-          _context2.next = 6;
-          return findByTestId('fatal-error');
-
-        case 6:
-          _context2.t1 = _context2.sent;
-
-          _context2.t0.click.call(_context2.t0, _context2.t1);
-
-          expect(getByText('Are you sure you want to reset? This will restore the default configuration.')).toBeTruthy();
-
-        case 9:
-        case "end":
-          return _context2.stop();
-      }
-    }
-  }, _callee2);
-})));

package/ui/SanitizedHTML.test.js

@@ -1,36 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _react = _interopRequireDefault(require("react"));
-
-require("@testing-library/jest-dom/extend-expect");
-
-var _react2 = require("@testing-library/react");
-
-var _SanitizedHTML = _interopRequireDefault(require("./SanitizedHTML"));
-
-test('test basic escaping with bold', function () {
-  var _render = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_SanitizedHTML.default, {
-    html: "<b>Test</b"
-  })),
-      getByText = _render.getByText;
-
-  expect(getByText('Test')).toBeInTheDocument();
-});
-test('test escaping', function () {
-  var _render2 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_SanitizedHTML.default, {
-    html: "<bb>Test</b"
-  })),
-      getByText = _render2.getByText;
-
-  expect(getByText('<bb>Test</b')).toBeInTheDocument();
-});
-test('test <TRA>', function () {
-  var _render3 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_SanitizedHTML.default, {
-    html: "<TRA><DEL><INS><DEL:ME>"
-  })),
-      getByText = _render3.getByText;
-
-  expect(getByText('<TRA><DEL><INS><DEL:ME>')).toBeInTheDocument();
-});