@jbrowse/core 2.0.1 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (179) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +6 -0
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +313 -592
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +213 -479
  4. package/BaseFeatureWidget/index.js +88 -126
  5. package/BaseFeatureWidget/types.js +1 -4
  6. package/BaseFeatureWidget/util.js +40 -75
  7. package/CorePlugin.js +55 -94
  8. package/Plugin.js +9 -34
  9. package/PluginLoader.js +153 -422
  10. package/PluginManager.d.ts +17 -14
  11. package/PluginManager.js +377 -666
  12. package/ReExports/Attributes.js +3 -10
  13. package/ReExports/BaseCard.js +3 -10
  14. package/ReExports/DataGrid.js +5 -12
  15. package/ReExports/FeatureDetails.js +3 -10
  16. package/ReExports/index.js +6 -12
  17. package/ReExports/list.d.ts +5 -0
  18. package/ReExports/list.js +271 -7
  19. package/ReExports/material-ui-colors.js +15 -16
  20. package/ReExports/modules.d.ts +0 -1
  21. package/ReExports/modules.js +453 -798
  22. package/TextSearch/BaseResults.js +51 -123
  23. package/TextSearch/TextSearchManager.js +66 -144
  24. package/assemblyManager/assembly.js +280 -555
  25. package/assemblyManager/assemblyConfigSchema.js +47 -64
  26. package/assemblyManager/assemblyManager.js +126 -272
  27. package/assemblyManager/index.js +9 -22
  28. package/configuration/configurationSchema.js +167 -203
  29. package/configuration/configurationSlot.js +248 -326
  30. package/configuration/index.js +19 -35
  31. package/configuration/util.js +131 -173
  32. package/data_adapters/BaseAdapter.d.ts +2 -2
  33. package/data_adapters/BaseAdapter.js +132 -521
  34. package/data_adapters/CytobandAdapter.js +40 -126
  35. package/data_adapters/dataAdapterCache.js +77 -158
  36. package/package.json +4 -5
  37. package/pluggableElementTypes/AdapterType.js +24 -79
  38. package/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  39. package/pluggableElementTypes/AddTrackWorkflowType.js +20 -0
  40. package/pluggableElementTypes/ConnectionType.js +22 -65
  41. package/pluggableElementTypes/DisplayType.js +35 -82
  42. package/pluggableElementTypes/InternetAccountType.js +23 -64
  43. package/pluggableElementTypes/PluggableElementBase.js +8 -20
  44. package/pluggableElementTypes/RpcMethodType.js +85 -427
  45. package/pluggableElementTypes/TextSearchAdapterType.js +16 -55
  46. package/pluggableElementTypes/TrackType.js +26 -70
  47. package/pluggableElementTypes/ViewType.js +21 -63
  48. package/pluggableElementTypes/WidgetType.js +21 -64
  49. package/pluggableElementTypes/index.d.ts +4 -3
  50. package/pluggableElementTypes/index.js +42 -125
  51. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +28 -43
  52. package/pluggableElementTypes/models/BaseDisplayModel.js +58 -95
  53. package/pluggableElementTypes/models/BaseTrackModel.js +139 -199
  54. package/pluggableElementTypes/models/BaseViewModel.js +24 -40
  55. package/pluggableElementTypes/models/InternetAccountModel.js +116 -263
  56. package/pluggableElementTypes/models/baseConnectionConfig.js +14 -25
  57. package/pluggableElementTypes/models/baseInternetAccountConfig.js +29 -38
  58. package/pluggableElementTypes/models/baseTrackConfig.js +106 -133
  59. package/pluggableElementTypes/models/index.js +21 -70
  60. package/pluggableElementTypes/renderers/BoxRendererType.js +132 -291
  61. package/pluggableElementTypes/renderers/CircularChordRendererType.js +8 -38
  62. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +60 -192
  63. package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -2
  64. package/pluggableElementTypes/renderers/FeatureRendererType.js +89 -264
  65. package/pluggableElementTypes/renderers/RendererType.js +31 -105
  66. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +61 -72
  67. package/pluggableElementTypes/renderers/ServerSideRendererType.js +112 -265
  68. package/pluggableElementTypes/renderers/index.js +19 -62
  69. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +27 -65
  70. package/rpc/BaseRpcDriver.js +169 -405
  71. package/rpc/MainThreadRpcDriver.js +27 -150
  72. package/rpc/RpcManager.js +58 -159
  73. package/rpc/WebWorkerRpcDriver.js +54 -171
  74. package/rpc/configSchema.js +25 -49
  75. package/rpc/coreRpcMethods.js +221 -959
  76. package/rpc/remoteAbortSignals.js +46 -70
  77. package/tsconfig.build.tsbuildinfo +1 -1
  78. package/ui/AboutDialog.js +106 -162
  79. package/ui/App.js +157 -242
  80. package/ui/AssemblySelector.js +59 -120
  81. package/ui/CascadingMenu.js +101 -196
  82. package/ui/ColorPicker.d.ts +16 -0
  83. package/ui/ColorPicker.js +97 -0
  84. package/ui/Drawer.js +28 -61
  85. package/ui/DrawerWidget.js +108 -202
  86. package/ui/DropDownMenu.js +60 -91
  87. package/ui/EditableTypography.js +87 -149
  88. package/ui/ErrorMessage.js +41 -56
  89. package/ui/FactoryResetDialog.js +24 -57
  90. package/ui/FatalErrorDialog.js +59 -91
  91. package/ui/FileSelector/FileSelector.js +123 -189
  92. package/ui/FileSelector/LocalFileChooser.js +44 -75
  93. package/ui/FileSelector/UrlChooser.js +17 -38
  94. package/ui/FileSelector/index.js +6 -12
  95. package/ui/Icons.js +45 -69
  96. package/ui/Logo.js +57 -110
  97. package/ui/Menu.js +232 -354
  98. package/ui/PrerenderedCanvas.js +63 -87
  99. package/ui/ResizeHandle.js +87 -116
  100. package/ui/ReturnToImportFormDialog.js +32 -63
  101. package/ui/SanitizedHTML.js +64 -47
  102. package/ui/Snackbar.js +74 -101
  103. package/ui/SnackbarModel.js +37 -51
  104. package/ui/Tooltip.js +49 -76
  105. package/ui/ViewContainer.js +113 -196
  106. package/ui/colors.d.ts +10 -0
  107. package/ui/colors.js +78 -0
  108. package/ui/index.js +51 -181
  109. package/ui/react-colorful.d.ts +17 -0
  110. package/ui/react-colorful.js +455 -0
  111. package/ui/theme.js +199 -247
  112. package/util/Base1DUtils.js +163 -202
  113. package/util/Base1DViewModel.js +121 -168
  114. package/util/QuickLRU.js +84 -332
  115. package/util/TimeTraveller.d.ts +19 -0
  116. package/util/TimeTraveller.js +86 -0
  117. package/util/aborting.js +49 -127
  118. package/util/analytics.js +91 -154
  119. package/util/blockTypes.js +106 -240
  120. package/util/calculateDynamicBlocks.js +98 -128
  121. package/util/calculateStaticBlocks.js +105 -125
  122. package/util/color/cssColorsLevel4.js +156 -160
  123. package/util/color/index.js +33 -55
  124. package/util/compositeMap.js +49 -333
  125. package/util/formatFastaStrings.js +9 -14
  126. package/util/idMaker.js +18 -31
  127. package/util/index.d.ts +7 -20
  128. package/util/index.js +742 -1188
  129. package/util/io/RemoteFileWithRangeCache.js +88 -257
  130. package/util/io/index.js +95 -169
  131. package/util/jexl.js +60 -115
  132. package/util/jexlStrings.js +24 -29
  133. package/util/layouts/BaseLayout.js +1 -4
  134. package/util/layouts/GranularRectLayout.js +388 -555
  135. package/util/layouts/MultiLayout.js +41 -109
  136. package/util/layouts/PrecomputedLayout.js +56 -112
  137. package/util/layouts/PrecomputedMultiLayout.js +22 -59
  138. package/util/layouts/SceneGraph.js +127 -197
  139. package/util/layouts/index.js +29 -66
  140. package/util/mst-reflection.js +55 -71
  141. package/util/offscreenCanvasPonyfill.js +66 -134
  142. package/util/offscreenCanvasUtils.d.ts +2 -7
  143. package/util/offscreenCanvasUtils.js +49 -146
  144. package/util/range.js +29 -40
  145. package/util/rxjs.js +20 -27
  146. package/util/simpleFeature.js +88 -152
  147. package/util/stats.js +91 -151
  148. package/util/tracks.js +130 -173
  149. package/util/types/index.js +110 -179
  150. package/util/types/mst.js +91 -146
  151. package/util/types/util.js +1 -4
  152. package/util/when.js +54 -101
  153. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +0 -122
  154. package/BaseFeatureWidget/index.test.js +0 -69
  155. package/TextSearch/BaseResults.test.js +0 -42
  156. package/configuration/configurationSchema.test.js +0 -266
  157. package/configuration/configurationSlot.test.js +0 -69
  158. package/configuration/util.test.js +0 -39
  159. package/data_adapters/BaseAdapter.test.js +0 -200
  160. package/declare.d.js +0 -1
  161. package/pluggableElementTypes/RpcMethodType.test.js +0 -118
  162. package/pluggableElementTypes/renderers/declare.d.js +0 -1
  163. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +0 -20
  164. package/rpc/BaseRpcDriver.test.js +0 -540
  165. package/rpc/declaration.d.js +0 -1
  166. package/ui/FatalErrorDialog.test.js +0 -82
  167. package/ui/SanitizedHTML.test.js +0 -36
  168. package/ui/theme.test.js +0 -92
  169. package/util/Base1DViewModel.test.js +0 -130
  170. package/util/calculateDynamicBlocks.test.js +0 -74
  171. package/util/calculateStaticBlocks.test.js +0 -297
  172. package/util/declare.d.js +0 -1
  173. package/util/formatFastaStrings.test.js +0 -40
  174. package/util/index.test.js +0 -213
  175. package/util/jexlStrings.test.js +0 -48
  176. package/util/layouts/GranularRectLayout.test.js +0 -99
  177. package/util/range.test.js +0 -64
  178. package/util/simpleFeature.test.js +0 -34
  179. package/util/stats.test.js +0 -172
@@ -1,95 +1,71 @@
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-
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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-
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- var _typeof = require("@babel/runtime/helpers/typeof");
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-
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- Object.defineProperty(exports, "__esModule", {
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- value: true
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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  });
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- exports.default = void 0;
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-
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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-
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- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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-
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- var _propTypes = _interopRequireDefault(require("prop-types"));
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-
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- var _react = _interopRequireWildcard(require("react"));
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-
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- var _offscreenCanvasPonyfill = require("../util/offscreenCanvasPonyfill");
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-
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- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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-
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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-
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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-
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+ var __importStar = (this && this.__importStar) || function (mod) {
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+ if (mod && mod.__esModule) return mod;
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+ var result = {};
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+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
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+ __setModuleDefault(result, mod);
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+ return result;
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+ };
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+ var __importDefault = (this && this.__importDefault) || function (mod) {
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+ return (mod && mod.__esModule) ? mod : { "default": mod };
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ /* eslint-disable @typescript-eslint/no-explicit-any */
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+ const prop_types_1 = __importDefault(require("prop-types"));
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+ const react_1 = __importStar(require("react"));
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+ const offscreenCanvasPonyfill_1 = require("../util/offscreenCanvasPonyfill");
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  function PrerenderedCanvas(props) {
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- var width = props.width,
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- height = props.height,
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- highResolutionScaling = props.highResolutionScaling,
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- style = props.style,
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- imageData = props.imageData,
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- blockKey = props.blockKey,
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- showSoftClip = props.showSoftClip;
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-
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- var _useState = (0, _react.useState)(false),
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- _useState2 = (0, _slicedToArray2.default)(_useState, 2),
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- done = _useState2[0],
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- setDone = _useState2[1];
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-
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- var featureCanvas = (0, _react.useRef)(null);
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- (0, _react.useEffect)(function () {
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- if (!imageData) {
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- return;
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- }
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-
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- var canvas = featureCanvas.current;
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-
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- if (!canvas) {
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- return;
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- }
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-
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- var context = canvas.getContext('2d');
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-
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- if (!context) {
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- return;
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- }
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-
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- (0, _offscreenCanvasPonyfill.drawImageOntoCanvasContext)(imageData, context);
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- setDone(true);
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- }, [imageData]);
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- var softClipString = showSoftClip ? '_softclipped' : '';
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- var blockKeyStr = blockKey ? '_' + blockKey : '';
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- var testId = "prerendered_canvas".concat(softClipString).concat(blockKeyStr).concat(done ? '_done' : '');
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- return /*#__PURE__*/_react.default.createElement("canvas", {
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- "data-testid": testId,
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- ref: featureCanvas,
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- width: width * highResolutionScaling,
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- height: height * highResolutionScaling,
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- style: _objectSpread({
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- width: width,
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- height: height
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- }, style)
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- });
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+ const { width, height, highResolutionScaling, style, imageData, blockKey, showSoftClip, } = props;
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+ const [done, setDone] = (0, react_1.useState)(false);
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+ const featureCanvas = (0, react_1.useRef)(null);
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+ (0, react_1.useEffect)(() => {
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+ if (!imageData) {
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+ return;
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+ }
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+ const canvas = featureCanvas.current;
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+ if (!canvas) {
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+ return;
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+ }
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+ const context = canvas.getContext('2d');
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+ if (!context) {
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+ return;
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+ }
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+ (0, offscreenCanvasPonyfill_1.drawImageOntoCanvasContext)(imageData, context);
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+ setDone(true);
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+ }, [imageData]);
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+ const softClipString = showSoftClip ? '_softclipped' : '';
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+ const blockKeyStr = blockKey ? '_' + blockKey : '';
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+ const testId = `prerendered_canvas${softClipString}${blockKeyStr}${done ? '_done' : ''}`;
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+ return (react_1.default.createElement("canvas", { "data-testid": testId, ref: featureCanvas, width: width * highResolutionScaling, height: height * highResolutionScaling, style: { width, height, ...style } }));
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  }
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- width: _propTypes.default.number.isRequired,
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- highResolutionScaling: _propTypes.default.number,
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- style: _propTypes.default.objectOf(_propTypes.default.any),
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- imageData: _propTypes.default.any // config: ReactPropTypes.objectOf(ReactPropTypes.any),
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+ height: prop_types_1.default.number.isRequired,
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+ width: prop_types_1.default.number.isRequired,
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+ highResolutionScaling: prop_types_1.default.number,
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+ style: prop_types_1.default.objectOf(prop_types_1.default.any),
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+ imageData: prop_types_1.default.any,
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+ // config: ReactPropTypes.objectOf(ReactPropTypes.any),
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  };
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- highResolutionScaling: 1,
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- style: {} // config: {},
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+ highResolutionScaling: 1,
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+ style: {},
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+ // config: {},
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  };
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+ exports.default = PrerenderedCanvas;
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- var _typeof = require("@babel/runtime/helpers/typeof");
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- Object.defineProperty(exports, "__esModule", {
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- value: true
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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- var _react = _interopRequireWildcard(require("react"));
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- var _mui = require("tss-react/mui");
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- var _excluded = ["onDrag", "vertical", "flexbox", "className"];
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- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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-
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- var useStyles = (0, _mui.makeStyles)()({
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- horizontalHandle: {
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- cursor: 'row-resize',
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- width: '100%'
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- },
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- verticalHandle: {
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- cursor: 'col-resize',
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- height: '100%'
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- },
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- flexbox_verticalHandle: {
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- cursor: 'col-resize',
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- alignSelf: 'stretch' // the height: 100% is actually unable to function inside flexbox
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-
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- },
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- flexbox_horizontalHandle: {
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- cursor: 'row-resize',
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- alignSelf: 'stretch' // similar to above
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-
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- }
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+ var __importStar = (this && this.__importStar) || function (mod) {
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+ if (mod && mod.__esModule) return mod;
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+ var result = {};
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+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
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+ __setModuleDefault(result, mod);
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+ return result;
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ const react_1 = __importStar(require("react"));
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+ const mui_1 = require("tss-react/mui");
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+ const useStyles = (0, mui_1.makeStyles)()({
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+ horizontalHandle: {
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+ cursor: 'row-resize',
31
+ width: '100%',
32
+ },
33
+ verticalHandle: {
34
+ cursor: 'col-resize',
35
+ height: '100%',
36
+ },
37
+ flexbox_verticalHandle: {
38
+ cursor: 'col-resize',
39
+ alignSelf: 'stretch', // the height: 100% is actually unable to function inside flexbox
40
+ },
41
+ flexbox_horizontalHandle: {
42
+ cursor: 'row-resize',
43
+ alignSelf: 'stretch', // similar to above
44
+ },
47
45
  });
48
-
49
- function ResizeHandle(_ref) {
50
- var onDrag = _ref.onDrag,
51
- _ref$vertical = _ref.vertical,
52
- vertical = _ref$vertical === void 0 ? false : _ref$vertical,
53
- _ref$flexbox = _ref.flexbox,
54
- flexbox = _ref$flexbox === void 0 ? false : _ref$flexbox,
55
- originalClassName = _ref.className,
56
- props = (0, _objectWithoutProperties2.default)(_ref, _excluded);
57
-
58
- var _useState = (0, _react.useState)(false),
59
- _useState2 = (0, _slicedToArray2.default)(_useState, 2),
60
- mouseDragging = _useState2[0],
61
- setMouseDragging = _useState2[1];
62
-
63
- var prevPos = (0, _react.useRef)(0);
64
-
65
- var _useStyles = useStyles(),
66
- classes = _useStyles.classes,
67
- cx = _useStyles.cx;
68
-
69
- (0, _react.useEffect)(function () {
70
- function mouseMove(event) {
71
- event.preventDefault();
72
- var pos = vertical ? event.clientX : event.clientY;
73
- var distance = pos - prevPos.current;
74
-
75
- if (distance) {
76
- onDrag(distance);
77
- prevPos.current = pos;
78
- }
79
- }
80
-
81
- function mouseUp() {
82
- setMouseDragging(false);
46
+ function ResizeHandle({ onDrag, vertical = false, flexbox = false, className: originalClassName, ...props }) {
47
+ const [mouseDragging, setMouseDragging] = (0, react_1.useState)(false);
48
+ const prevPos = (0, react_1.useRef)(0);
49
+ const { classes, cx } = useStyles();
50
+ (0, react_1.useEffect)(() => {
51
+ function mouseMove(event) {
52
+ event.preventDefault();
53
+ const pos = vertical ? event.clientX : event.clientY;
54
+ const distance = pos - prevPos.current;
55
+ if (distance) {
56
+ onDrag(distance);
57
+ prevPos.current = pos;
58
+ }
59
+ }
60
+ function mouseUp() {
61
+ setMouseDragging(false);
62
+ }
63
+ if (mouseDragging) {
64
+ window.addEventListener('mousemove', mouseMove, true);
65
+ window.addEventListener('mouseup', mouseUp, true);
66
+ return () => {
67
+ window.removeEventListener('mousemove', mouseMove, true);
68
+ window.removeEventListener('mouseup', mouseUp, true);
69
+ };
70
+ }
71
+ return () => { };
72
+ }, [mouseDragging, onDrag, vertical]);
73
+ let className;
74
+ if (flexbox) {
75
+ if (vertical) {
76
+ className = classes.flexbox_verticalHandle;
77
+ }
78
+ else {
79
+ className = classes.flexbox_horizontalHandle;
80
+ }
83
81
  }
84
-
85
- if (mouseDragging) {
86
- window.addEventListener('mousemove', mouseMove, true);
87
- window.addEventListener('mouseup', mouseUp, true);
88
- return function () {
89
- window.removeEventListener('mousemove', mouseMove, true);
90
- window.removeEventListener('mouseup', mouseUp, true);
91
- };
82
+ else if (vertical) {
83
+ className = classes.verticalHandle;
92
84
  }
93
-
94
- return function () {};
95
- }, [mouseDragging, onDrag, vertical]);
96
- var className;
97
-
98
- if (flexbox) {
99
- if (vertical) {
100
- className = classes.flexbox_verticalHandle;
101
- } else {
102
- className = classes.flexbox_horizontalHandle;
85
+ else {
86
+ className = classes.horizontalHandle;
103
87
  }
104
- } else if (vertical) {
105
- className = classes.verticalHandle;
106
- } else {
107
- className = classes.horizontalHandle;
108
- }
109
-
110
- return /*#__PURE__*/_react.default.createElement("div", (0, _extends2.default)({
111
- "data-resizer": "true",
112
- onMouseDown: function onMouseDown(event) {
113
- event.preventDefault();
114
- prevPos.current = vertical ? event.clientX : event.clientY;
115
- setMouseDragging(true);
116
- },
117
- role: "presentation",
118
- className: cx(className, originalClassName)
119
- }, props));
88
+ return (react_1.default.createElement("div", { "data-resizer": "true", onMouseDown: event => {
89
+ event.preventDefault();
90
+ prevPos.current = vertical ? event.clientX : event.clientY;
91
+ setMouseDragging(true);
92
+ }, role: "presentation", className: cx(className, originalClassName), ...props }));
120
93
  }
121
-
122
- var _default = ResizeHandle;
123
- exports.default = _default;
94
+ exports.default = ResizeHandle;
@@ -1,67 +1,36 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- Object.defineProperty(exports, "__esModule", {
6
- value: true
7
- });
8
- exports.default = void 0;
9
-
10
- var _react = _interopRequireDefault(require("react"));
11
-
12
- var _mobxReact = require("mobx-react");
13
-
14
- var _material = require("@mui/material");
15
-
16
- var _mui = require("tss-react/mui");
17
-
18
- var _Close = _interopRequireDefault(require("@mui/icons-material/Close"));
19
-
20
- var useStyles = (0, _mui.makeStyles)()(function (theme) {
21
- return {
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ const react_1 = __importDefault(require("react"));
7
+ const mobx_react_1 = require("mobx-react");
8
+ const material_1 = require("@mui/material");
9
+ const mui_1 = require("tss-react/mui");
10
+ const Close_1 = __importDefault(require("@mui/icons-material/Close"));
11
+ const useStyles = (0, mui_1.makeStyles)()(theme => ({
22
12
  closeButton: {
23
- position: 'absolute',
24
- right: theme.spacing(1),
25
- top: theme.spacing(1),
26
- color: theme.palette.grey[500]
27
- }
28
- };
29
- });
30
-
31
- function ReturnToImportFormDialog(_ref) {
32
- var model = _ref.model,
33
- handleClose = _ref.handleClose;
34
-
35
- var _useStyles = useStyles(),
36
- classes = _useStyles.classes;
37
-
38
- return /*#__PURE__*/_react.default.createElement(_material.Dialog, {
39
- maxWidth: "xl",
40
- open: true,
41
- onClose: handleClose
42
- }, /*#__PURE__*/_react.default.createElement(_material.DialogTitle, null, "Reference sequence", handleClose ? /*#__PURE__*/_react.default.createElement(_material.IconButton, {
43
- className: classes.closeButton,
44
- onClick: function onClick() {
45
- return handleClose();
13
+ position: 'absolute',
14
+ right: theme.spacing(1),
15
+ top: theme.spacing(1),
16
+ color: theme.palette.grey[500],
46
17
  },
47
- size: "large"
48
- }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_material.Divider, null), /*#__PURE__*/_react.default.createElement(_material.DialogContent, null, /*#__PURE__*/_react.default.createElement(_material.Typography, null, "Are you sure you want to return to the import form? This will lose your current view")), /*#__PURE__*/_react.default.createElement(_material.DialogActions, null, /*#__PURE__*/_react.default.createElement(_material.Button, {
49
- onClick: function onClick() {
50
- model.clearView();
51
- handleClose();
52
- },
53
- variant: "contained",
54
- color: "primary",
55
- autoFocus: true
56
- }, "OK"), /*#__PURE__*/_react.default.createElement(_material.Button, {
57
- onClick: function onClick() {
58
- return handleClose();
59
- },
60
- color: "secondary",
61
- variant: "contained"
62
- }, "Cancel")));
18
+ }));
19
+ function ReturnToImportFormDialog({ model, handleClose, }) {
20
+ const { classes } = useStyles();
21
+ return (react_1.default.createElement(material_1.Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
22
+ react_1.default.createElement(material_1.DialogTitle, null,
23
+ "Reference sequence",
24
+ handleClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose(), size: "large" },
25
+ react_1.default.createElement(Close_1.default, null))) : null),
26
+ react_1.default.createElement(material_1.Divider, null),
27
+ react_1.default.createElement(material_1.DialogContent, null,
28
+ react_1.default.createElement(material_1.Typography, null, "Are you sure you want to return to the import form? This will lose your current view")),
29
+ react_1.default.createElement(material_1.DialogActions, null,
30
+ react_1.default.createElement(material_1.Button, { onClick: () => {
31
+ model.clearView();
32
+ handleClose();
33
+ }, variant: "contained", color: "primary", autoFocus: true }, "OK"),
34
+ react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), color: "secondary", variant: "contained" }, "Cancel"))));
63
35
  }
64
-
65
- var _default = (0, _mobxReact.observer)(ReturnToImportFormDialog);
66
-
67
- exports.default = _default;
36
+ exports.default = (0, mobx_react_1.observer)(ReturnToImportFormDialog);
@@ -1,57 +1,74 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- Object.defineProperty(exports, "__esModule", {
6
- value: true
7
- });
8
- exports.default = SanitizedHTML;
9
- exports.isHTML = isHTML;
10
-
11
- var _react = _interopRequireDefault(require("react"));
12
-
13
- var _escapeHtml = _interopRequireDefault(require("escape-html"));
14
-
15
- var _dompurify = _interopRequireDefault(require("dompurify"));
16
-
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.isHTML = void 0;
7
+ const react_1 = __importDefault(require("react"));
8
+ const escape_html_1 = __importDefault(require("escape-html"));
9
+ const dompurify_1 = __importDefault(require("dompurify"));
17
10
  // source https://github.com/sindresorhus/html-tags/blob/master/html-tags.json
18
11
  // with some random uncommon ones removed. note: we just use this to run the content
19
12
  // through dompurify without escaping if we see an htmlTag from this list
20
13
  // otherwise we escape angle brackets and things prematurely because it might be
21
14
  // something like <TRA> in VCF. Ref #657
22
- var htmlTags = ['a', 'b', 'br', 'code', 'div', 'em', 'h1', 'h2', 'h3', 'h4', 'h5', 'h6', 'i', 'img', 'li', 'p', 'pre', 'span', 'small', 'strong', 'table', 'tbody', 'td', 'tfoot', 'th', 'thead', 'tr', 'u', 'ul'];
23
- var added = false; // adapted from is-html
15
+ const htmlTags = [
16
+ 'a',
17
+ 'b',
18
+ 'br',
19
+ 'code',
20
+ 'div',
21
+ 'em',
22
+ 'h1',
23
+ 'h2',
24
+ 'h3',
25
+ 'h4',
26
+ 'h5',
27
+ 'h6',
28
+ 'i',
29
+ 'img',
30
+ 'li',
31
+ 'p',
32
+ 'pre',
33
+ 'span',
34
+ 'small',
35
+ 'strong',
36
+ 'table',
37
+ 'tbody',
38
+ 'td',
39
+ 'tfoot',
40
+ 'th',
41
+ 'thead',
42
+ 'tr',
43
+ 'u',
44
+ 'ul',
45
+ ];
46
+ let added = false;
47
+ // adapted from is-html
24
48
  // https://github.com/sindresorhus/is-html/blob/master/index.js
25
-
26
- var full = new RegExp(htmlTags.map(function (tag) {
27
- return "<".concat(tag, "\\b[^>]*>");
28
- }).join('|'), 'i');
29
-
49
+ const full = new RegExp(htmlTags.map(tag => `<${tag}\\b[^>]*>`).join('|'), 'i');
30
50
  function isHTML(str) {
31
- return full.test(str);
51
+ return full.test(str);
32
52
  }
33
-
34
- function SanitizedHTML(_ref) {
35
- var html = _ref.html;
36
- var value = isHTML(html) ? html : (0, _escapeHtml.default)(html);
37
-
38
- if (!added) {
39
- added = true; // see https://github.com/cure53/DOMPurify/issues/317
40
- // only have to add this once, and can't do it globally because dompurify
41
- // not yet initialized at global scope
42
-
43
- _dompurify.default.addHook('afterSanitizeAttributes', function (node) {
44
- if (node.tagName === 'A') {
45
- node.setAttribute('rel', 'noopener noreferrer');
46
- node.setAttribute('target', '_blank');
47
- }
48
- });
49
- }
50
-
51
- return /*#__PURE__*/_react.default.createElement("div", {
52
- // eslint-disable-next-line react/no-danger
53
- dangerouslySetInnerHTML: {
54
- __html: _dompurify.default.sanitize(value)
53
+ exports.isHTML = isHTML;
54
+ function SanitizedHTML({ html }) {
55
+ const value = isHTML(html) ? html : (0, escape_html_1.default)(html);
56
+ if (!added) {
57
+ added = true;
58
+ // see https://github.com/cure53/DOMPurify/issues/317
59
+ // only have to add this once, and can't do it globally because dompurify
60
+ // not yet initialized at global scope
61
+ dompurify_1.default.addHook('afterSanitizeAttributes', node => {
62
+ if (node.tagName === 'A') {
63
+ node.setAttribute('rel', 'noopener noreferrer');
64
+ node.setAttribute('target', '_blank');
65
+ }
66
+ });
55
67
  }
56
- });
57
- }
68
+ return (react_1.default.createElement("div", {
69
+ // eslint-disable-next-line react/no-danger
70
+ dangerouslySetInnerHTML: {
71
+ __html: dompurify_1.default.sanitize(value),
72
+ } }));
73
+ }
74
+ exports.default = SanitizedHTML;