@jbrowse/core 2.0.1 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (179) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +6 -0
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +313 -592
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +213 -479
  4. package/BaseFeatureWidget/index.js +88 -126
  5. package/BaseFeatureWidget/types.js +1 -4
  6. package/BaseFeatureWidget/util.js +40 -75
  7. package/CorePlugin.js +55 -94
  8. package/Plugin.js +9 -34
  9. package/PluginLoader.js +153 -422
  10. package/PluginManager.d.ts +17 -14
  11. package/PluginManager.js +377 -666
  12. package/ReExports/Attributes.js +3 -10
  13. package/ReExports/BaseCard.js +3 -10
  14. package/ReExports/DataGrid.js +5 -12
  15. package/ReExports/FeatureDetails.js +3 -10
  16. package/ReExports/index.js +6 -12
  17. package/ReExports/list.d.ts +5 -0
  18. package/ReExports/list.js +271 -7
  19. package/ReExports/material-ui-colors.js +15 -16
  20. package/ReExports/modules.d.ts +0 -1
  21. package/ReExports/modules.js +453 -798
  22. package/TextSearch/BaseResults.js +51 -123
  23. package/TextSearch/TextSearchManager.js +66 -144
  24. package/assemblyManager/assembly.js +280 -555
  25. package/assemblyManager/assemblyConfigSchema.js +47 -64
  26. package/assemblyManager/assemblyManager.js +126 -272
  27. package/assemblyManager/index.js +9 -22
  28. package/configuration/configurationSchema.js +167 -203
  29. package/configuration/configurationSlot.js +248 -326
  30. package/configuration/index.js +19 -35
  31. package/configuration/util.js +131 -173
  32. package/data_adapters/BaseAdapter.d.ts +2 -2
  33. package/data_adapters/BaseAdapter.js +132 -521
  34. package/data_adapters/CytobandAdapter.js +40 -126
  35. package/data_adapters/dataAdapterCache.js +77 -158
  36. package/package.json +4 -5
  37. package/pluggableElementTypes/AdapterType.js +24 -79
  38. package/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  39. package/pluggableElementTypes/AddTrackWorkflowType.js +20 -0
  40. package/pluggableElementTypes/ConnectionType.js +22 -65
  41. package/pluggableElementTypes/DisplayType.js +35 -82
  42. package/pluggableElementTypes/InternetAccountType.js +23 -64
  43. package/pluggableElementTypes/PluggableElementBase.js +8 -20
  44. package/pluggableElementTypes/RpcMethodType.js +85 -427
  45. package/pluggableElementTypes/TextSearchAdapterType.js +16 -55
  46. package/pluggableElementTypes/TrackType.js +26 -70
  47. package/pluggableElementTypes/ViewType.js +21 -63
  48. package/pluggableElementTypes/WidgetType.js +21 -64
  49. package/pluggableElementTypes/index.d.ts +4 -3
  50. package/pluggableElementTypes/index.js +42 -125
  51. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +28 -43
  52. package/pluggableElementTypes/models/BaseDisplayModel.js +58 -95
  53. package/pluggableElementTypes/models/BaseTrackModel.js +139 -199
  54. package/pluggableElementTypes/models/BaseViewModel.js +24 -40
  55. package/pluggableElementTypes/models/InternetAccountModel.js +116 -263
  56. package/pluggableElementTypes/models/baseConnectionConfig.js +14 -25
  57. package/pluggableElementTypes/models/baseInternetAccountConfig.js +29 -38
  58. package/pluggableElementTypes/models/baseTrackConfig.js +106 -133
  59. package/pluggableElementTypes/models/index.js +21 -70
  60. package/pluggableElementTypes/renderers/BoxRendererType.js +132 -291
  61. package/pluggableElementTypes/renderers/CircularChordRendererType.js +8 -38
  62. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +60 -192
  63. package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -2
  64. package/pluggableElementTypes/renderers/FeatureRendererType.js +89 -264
  65. package/pluggableElementTypes/renderers/RendererType.js +31 -105
  66. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +61 -72
  67. package/pluggableElementTypes/renderers/ServerSideRendererType.js +112 -265
  68. package/pluggableElementTypes/renderers/index.js +19 -62
  69. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +27 -65
  70. package/rpc/BaseRpcDriver.js +169 -405
  71. package/rpc/MainThreadRpcDriver.js +27 -150
  72. package/rpc/RpcManager.js +58 -159
  73. package/rpc/WebWorkerRpcDriver.js +54 -171
  74. package/rpc/configSchema.js +25 -49
  75. package/rpc/coreRpcMethods.js +221 -959
  76. package/rpc/remoteAbortSignals.js +46 -70
  77. package/tsconfig.build.tsbuildinfo +1 -1
  78. package/ui/AboutDialog.js +106 -162
  79. package/ui/App.js +157 -242
  80. package/ui/AssemblySelector.js +59 -120
  81. package/ui/CascadingMenu.js +101 -196
  82. package/ui/ColorPicker.d.ts +16 -0
  83. package/ui/ColorPicker.js +97 -0
  84. package/ui/Drawer.js +28 -61
  85. package/ui/DrawerWidget.js +108 -202
  86. package/ui/DropDownMenu.js +60 -91
  87. package/ui/EditableTypography.js +87 -149
  88. package/ui/ErrorMessage.js +41 -56
  89. package/ui/FactoryResetDialog.js +24 -57
  90. package/ui/FatalErrorDialog.js +59 -91
  91. package/ui/FileSelector/FileSelector.js +123 -189
  92. package/ui/FileSelector/LocalFileChooser.js +44 -75
  93. package/ui/FileSelector/UrlChooser.js +17 -38
  94. package/ui/FileSelector/index.js +6 -12
  95. package/ui/Icons.js +45 -69
  96. package/ui/Logo.js +57 -110
  97. package/ui/Menu.js +232 -354
  98. package/ui/PrerenderedCanvas.js +63 -87
  99. package/ui/ResizeHandle.js +87 -116
  100. package/ui/ReturnToImportFormDialog.js +32 -63
  101. package/ui/SanitizedHTML.js +64 -47
  102. package/ui/Snackbar.js +74 -101
  103. package/ui/SnackbarModel.js +37 -51
  104. package/ui/Tooltip.js +49 -76
  105. package/ui/ViewContainer.js +113 -196
  106. package/ui/colors.d.ts +10 -0
  107. package/ui/colors.js +78 -0
  108. package/ui/index.js +51 -181
  109. package/ui/react-colorful.d.ts +17 -0
  110. package/ui/react-colorful.js +455 -0
  111. package/ui/theme.js +199 -247
  112. package/util/Base1DUtils.js +163 -202
  113. package/util/Base1DViewModel.js +121 -168
  114. package/util/QuickLRU.js +84 -332
  115. package/util/TimeTraveller.d.ts +19 -0
  116. package/util/TimeTraveller.js +86 -0
  117. package/util/aborting.js +49 -127
  118. package/util/analytics.js +91 -154
  119. package/util/blockTypes.js +106 -240
  120. package/util/calculateDynamicBlocks.js +98 -128
  121. package/util/calculateStaticBlocks.js +105 -125
  122. package/util/color/cssColorsLevel4.js +156 -160
  123. package/util/color/index.js +33 -55
  124. package/util/compositeMap.js +49 -333
  125. package/util/formatFastaStrings.js +9 -14
  126. package/util/idMaker.js +18 -31
  127. package/util/index.d.ts +7 -20
  128. package/util/index.js +742 -1188
  129. package/util/io/RemoteFileWithRangeCache.js +88 -257
  130. package/util/io/index.js +95 -169
  131. package/util/jexl.js +60 -115
  132. package/util/jexlStrings.js +24 -29
  133. package/util/layouts/BaseLayout.js +1 -4
  134. package/util/layouts/GranularRectLayout.js +388 -555
  135. package/util/layouts/MultiLayout.js +41 -109
  136. package/util/layouts/PrecomputedLayout.js +56 -112
  137. package/util/layouts/PrecomputedMultiLayout.js +22 -59
  138. package/util/layouts/SceneGraph.js +127 -197
  139. package/util/layouts/index.js +29 -66
  140. package/util/mst-reflection.js +55 -71
  141. package/util/offscreenCanvasPonyfill.js +66 -134
  142. package/util/offscreenCanvasUtils.d.ts +2 -7
  143. package/util/offscreenCanvasUtils.js +49 -146
  144. package/util/range.js +29 -40
  145. package/util/rxjs.js +20 -27
  146. package/util/simpleFeature.js +88 -152
  147. package/util/stats.js +91 -151
  148. package/util/tracks.js +130 -173
  149. package/util/types/index.js +110 -179
  150. package/util/types/mst.js +91 -146
  151. package/util/types/util.js +1 -4
  152. package/util/when.js +54 -101
  153. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +0 -122
  154. package/BaseFeatureWidget/index.test.js +0 -69
  155. package/TextSearch/BaseResults.test.js +0 -42
  156. package/configuration/configurationSchema.test.js +0 -266
  157. package/configuration/configurationSlot.test.js +0 -69
  158. package/configuration/util.test.js +0 -39
  159. package/data_adapters/BaseAdapter.test.js +0 -200
  160. package/declare.d.js +0 -1
  161. package/pluggableElementTypes/RpcMethodType.test.js +0 -118
  162. package/pluggableElementTypes/renderers/declare.d.js +0 -1
  163. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +0 -20
  164. package/rpc/BaseRpcDriver.test.js +0 -540
  165. package/rpc/declaration.d.js +0 -1
  166. package/ui/FatalErrorDialog.test.js +0 -82
  167. package/ui/SanitizedHTML.test.js +0 -36
  168. package/ui/theme.test.js +0 -92
  169. package/util/Base1DViewModel.test.js +0 -130
  170. package/util/calculateDynamicBlocks.test.js +0 -74
  171. package/util/calculateStaticBlocks.test.js +0 -297
  172. package/util/declare.d.js +0 -1
  173. package/util/formatFastaStrings.test.js +0 -40
  174. package/util/index.test.js +0 -213
  175. package/util/jexlStrings.test.js +0 -48
  176. package/util/layouts/GranularRectLayout.test.js +0 -99
  177. package/util/range.test.js +0 -64
  178. package/util/simpleFeature.test.js +0 -34
  179. package/util/stats.test.js +0 -172
@@ -1,266 +0,0 @@
1
- "use strict";
2
-
3
- var _mobxStateTree = require("mobx-state-tree");
4
-
5
- var _configurationSchema = require("./configurationSchema");
6
-
7
- var _util = require("./util");
8
-
9
- var _ = require(".");
10
-
11
- describe('configuration schemas', function () {
12
- test('can make a schema with a color', function () {
13
- var container = _mobxStateTree.types.model({
14
- configuration: (0, _configurationSchema.ConfigurationSchema)('Track', {
15
- backgroundColor: {
16
- description: "the track's background color",
17
- type: 'color',
18
- defaultValue: '#eee'
19
- },
20
- someInteger: {
21
- description: 'an integer slot',
22
- type: 'integer',
23
- defaultValue: 12
24
- }
25
- })
26
- });
27
-
28
- var model = container.create();
29
- expect((0, _util.isConfigurationModel)(model.configuration)).toBe(true);
30
- expect((0, _.getConf)(model, 'backgroundColor')).toBe('#eee');
31
- expect((0, _.getConf)(model, 'someInteger')).toBe(12);
32
- model.configuration.backgroundColor.set("jexl:'#'+a");
33
- expect((0, _.getConf)(model, 'backgroundColor', {
34
- a: 'zonk'
35
- })).toBe('#zonk');
36
- expect((0, _.getConf)(model, 'backgroundColor', {
37
- a: 'bar'
38
- })).toBe('#bar');
39
- model.configuration.backgroundColor.set('hoog');
40
- expect((0, _.getConf)(model, 'backgroundColor', {
41
- a: 'zonk'
42
- })).toBe('hoog');
43
- model.configuration.someInteger.set('jexl:5+a');
44
- expect((0, _.getConf)(model, 'someInteger', {
45
- a: 5
46
- })).toBe(10);
47
- model.configuration.someInteger.set(42);
48
- expect((0, _.getConf)(model, 'someInteger', {
49
- a: 5
50
- })).toBe(42);
51
- });
52
- test('can nest an array of configuration schemas', function () {
53
- var container = _mobxStateTree.types.model({
54
- configuration: (0, _configurationSchema.ConfigurationSchema)('Foo', {
55
- someInteger: {
56
- description: 'an integer slot',
57
- type: 'integer',
58
- defaultValue: 12
59
- },
60
- myArrayOfSubConfigurations: _mobxStateTree.types.array((0, _configurationSchema.ConfigurationSchema)('SubObject', {
61
- someNumber: {
62
- description: 'some number in a subconfiguration',
63
- type: 'number',
64
- defaultValue: 4.3
65
- }
66
- }))
67
- })
68
- });
69
-
70
- var model = container.create();
71
- expect((0, _.getConf)(model, 'someInteger')).toBe(12); // expect(getConf(model, 'myArrayOfSubConfigurations')).toBe(undefined)
72
- });
73
- test('can nest a single subconfiguration schema', function () {
74
- var container = _mobxStateTree.types.model({
75
- configuration: (0, _configurationSchema.ConfigurationSchema)('Foo', {
76
- someInteger: {
77
- description: 'an integer slot',
78
- type: 'integer',
79
- defaultValue: 12
80
- },
81
- mySubConfiguration: (0, _configurationSchema.ConfigurationSchema)('SubObject', {
82
- someNumber: {
83
- description: 'some number in a subconfiguration',
84
- type: 'number',
85
- defaultValue: 4.3
86
- }
87
- })
88
- })
89
- });
90
-
91
- var model = container.create();
92
- expect((0, _util.isConfigurationModel)(model.configuration)).toBe(true);
93
- expect((0, _.getConf)(model, 'someInteger')).toBe(12); // expect(getConf(model, 'mySubConfiguration.someNumber')).toBe(4.3)
94
- });
95
- test('can snapshot a simple schema', function () {
96
- var container = _mobxStateTree.types.model({
97
- configuration: (0, _configurationSchema.ConfigurationSchema)('Foo', {
98
- someInteger: {
99
- description: 'an integer slot',
100
- type: 'integer',
101
- defaultValue: 12
102
- }
103
- })
104
- });
105
-
106
- var model = container.create({
107
- configuration: {
108
- someInteger: 42
109
- }
110
- });
111
- expect((0, _.getConf)(model, 'someInteger')).toEqual(42);
112
- expect((0, _mobxStateTree.getSnapshot)(model)).toEqual({
113
- configuration: {
114
- someInteger: 42
115
- }
116
- });
117
- expect((0, _.getConf)(model, 'someInteger')).toEqual(42);
118
- var model2 = container.create({
119
- configuration: {}
120
- });
121
- expect((0, _mobxStateTree.getSnapshot)(model2)).toEqual({
122
- configuration: {}
123
- });
124
- expect((0, _.getConf)(model2, 'someInteger')).toEqual(12);
125
- });
126
- test('can snapshot a nested schema 1', function () {
127
- var container = _mobxStateTree.types.model({
128
- configuration: (0, _configurationSchema.ConfigurationSchema)('Foo', {
129
- someInteger: {
130
- description: 'an integer slot',
131
- type: 'integer',
132
- defaultValue: 12
133
- },
134
- mySubConfiguration: (0, _configurationSchema.ConfigurationSchema)('SubObject1', {
135
- someNumber: {
136
- description: 'some number in a subconfiguration',
137
- type: 'number',
138
- defaultValue: 4.3
139
- }
140
- }),
141
- myArrayOfSubConfigurations: _mobxStateTree.types.array((0, _configurationSchema.ConfigurationSchema)('SubObject2', {
142
- someNumber: {
143
- description: 'some number in a subconfiguration',
144
- type: 'number',
145
- defaultValue: 3.5
146
- }
147
- }))
148
- })
149
- });
150
-
151
- var model = container.create({
152
- configuration: {
153
- someInteger: 42,
154
- mySubConfiguration: {},
155
- myArrayOfSubConfigurations: [{
156
- someNumber: 3.5
157
- }, {
158
- someNumber: 11.1
159
- }]
160
- }
161
- });
162
- expect((0, _mobxStateTree.getSnapshot)(model)).toEqual({
163
- configuration: {
164
- someInteger: 42,
165
- // mySubConfiguration is set to the default, so doesn't appear in snapshot
166
- myArrayOfSubConfigurations: [{}, {
167
- someNumber: 11.1
168
- }]
169
- }
170
- });
171
- });
172
- test('can snapshot a nested schema 2', function () {
173
- var container = _mobxStateTree.types.model({
174
- configuration: (0, _configurationSchema.ConfigurationSchema)('Foo', {
175
- someInteger: {
176
- description: 'an integer slot',
177
- type: 'integer',
178
- defaultValue: 12
179
- },
180
- myConfigurationMap: _mobxStateTree.types.map((0, _configurationSchema.ConfigurationSchema)('MappedConfiguration', {
181
- mappedValue: {
182
- description: 'something in a mapped configuration',
183
- type: 'number',
184
- defaultValue: 101
185
- }
186
- })),
187
- mySubConfiguration: (0, _configurationSchema.ConfigurationSchema)('SubObject1', {
188
- someNumber: {
189
- description: 'some number in a subconfiguration',
190
- type: 'number',
191
- defaultValue: 4.3
192
- }
193
- }),
194
- myArrayOfSubConfigurations: _mobxStateTree.types.array((0, _configurationSchema.ConfigurationSchema)('SubObject2', {
195
- someNumber: {
196
- description: 'some number in a subconfiguration',
197
- type: 'number',
198
- defaultValue: 3.5
199
- }
200
- }))
201
- })
202
- });
203
-
204
- var model = container.create({
205
- configuration: {
206
- someInteger: 12,
207
- myConfigurationMap: {
208
- nog: {}
209
- },
210
- mySubConfiguration: {
211
- someNumber: 12
212
- }
213
- }
214
- });
215
- expect((0, _mobxStateTree.getSnapshot)(model)).toEqual({
216
- configuration: {
217
- myConfigurationMap: {
218
- nog: {}
219
- },
220
- mySubConfiguration: {
221
- someNumber: 12
222
- }
223
- }
224
- });
225
- expect((0, _.getConf)(model, ['mySubConfiguration', 'someNumber'])).toEqual(12);
226
- });
227
- test('re-check instantiation of slots (issue #797)', function () {
228
- var configSchema = (0, _configurationSchema.ConfigurationSchema)('Gff3TabixAdapter', {
229
- gffGzLocation: {
230
- type: 'fileLocation',
231
- defaultValue: {
232
- uri: '/path/to/my.gff.gz',
233
- locationType: 'UriLocation'
234
- }
235
- },
236
- index: (0, _configurationSchema.ConfigurationSchema)('Gff3TabixIndex', {
237
- indexType: {
238
- model: _mobxStateTree.types.enumeration('IndexType', ['TBI', 'CSI']),
239
- type: 'stringEnum',
240
- defaultValue: 'TBI'
241
- },
242
- location: {
243
- type: 'fileLocation',
244
- defaultValue: {
245
- uri: '/path/to/my.gff.gz.tbi',
246
- locationType: 'UriLocation'
247
- }
248
- }
249
- }),
250
- dontRedispatch: {
251
- type: 'stringArray',
252
- defaultValue: ['chromosome', 'region']
253
- },
254
- thisShouldGetInstantiated: {
255
- type: 'string',
256
- defaultValue: 'Not instantiated'
257
- }
258
- }, {
259
- explicitlyTyped: true
260
- });
261
- var tester = configSchema.create();
262
- expect((0, _.readConfObject)(tester, 'dontRedispatch')[0]).toBe('chromosome');
263
- expect((0, _.readConfObject)(tester, 'thisShouldGetInstantiated')).toBe('Not instantiated');
264
- expect((0, _.readConfObject)(tester, ['index', 'indexType'])).toBe('TBI');
265
- });
266
- });
@@ -1,69 +0,0 @@
1
- "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- var _configurationSlot = _interopRequireDefault(require("./configurationSlot"));
6
-
7
- test('can convert a string slot to and from a callback', function () {
8
- var model = (0, _configurationSlot.default)('tester', {
9
- type: 'string',
10
- defaultValue: 'foo'
11
- });
12
- var instance = model.create();
13
- expect(instance.value).toBe('foo');
14
- expect(instance.expr.evalSync()).toBe('foo');
15
- instance.convertToCallback();
16
- expect(instance.value).toBe('jexl:"foo"');
17
- expect(instance.expr.evalSync()).toBe('foo');
18
- instance.convertToValue();
19
- expect(instance.value).toBe('foo');
20
- expect(instance.expr.evalSync()).toBe('foo');
21
- });
22
- test('can convert a numeric slot to and from a callback', function () {
23
- var model = (0, _configurationSlot.default)('tester', {
24
- type: 'number',
25
- defaultValue: 12,
26
- contextVariable: ['something']
27
- });
28
- var instance = model.create();
29
- expect(instance.value).toBe(12);
30
- expect(instance.expr.evalSync()).toBe(12);
31
- instance.convertToCallback();
32
- expect(instance.value).toBe('jexl:12');
33
- expect(instance.expr.evalSync()).toBe(12);
34
- });
35
- test('can convert a stringArray slot to and from a callback', function () {
36
- var model = (0, _configurationSlot.default)('tester', {
37
- type: 'stringArray',
38
- defaultValue: ['foo', 'bar']
39
- });
40
- var instance = model.create();
41
- expect(instance.value).toEqual(['foo', 'bar']);
42
- expect(instance.expr.evalSync()).toEqual(['foo', 'bar']);
43
- instance.convertToCallback();
44
- expect(instance.value).toContain('jexl:');
45
- expect(instance.expr.evalSync()).toEqual(['foo', 'bar']);
46
- instance.convertToValue();
47
- expect(instance.expr.evalSync()).toEqual(['foo', 'bar']);
48
- expect(instance.value).toEqual(['foo', 'bar']);
49
- });
50
- test('can convert a slot with a default function value to a scalar value', function () {
51
- var model = (0, _configurationSlot.default)('tester', {
52
- type: 'string',
53
- defaultValue: 'jexl:get(feature,"foo")'
54
- });
55
- var instance = model.create();
56
- expect(instance.value).toBe('jexl:get(feature,"foo")');
57
- expect(function () {
58
- return instance.expr.evalSync();
59
- }).toThrow();
60
- instance.convertToCallback();
61
- expect(instance.value).toBe('jexl:get(feature,"foo")');
62
- expect(function () {
63
- return instance.expr.evalSync();
64
- }).toThrow();
65
- instance.convertToValue();
66
- expect(instance.value).not.toContain('jexl:');
67
- expect(instance.value).toBe('');
68
- expect(instance.expr.evalSync()).toEqual('');
69
- });
@@ -1,39 +0,0 @@
1
- "use strict";
2
-
3
- var _mobxStateTree = require("mobx-state-tree");
4
-
5
- var _configurationSchema = require("./configurationSchema");
6
-
7
- var _util = require("./util");
8
-
9
- describe('getTypeNamesFromExplicitlyTypedUnion', function () {
10
- test('regular config schemas', function () {
11
- var one = (0, _configurationSchema.ConfigurationSchema)('One', {}, {
12
- explicitlyTyped: true
13
- });
14
- var two = (0, _configurationSchema.ConfigurationSchema)('Two', {}, {
15
- explicitlyTyped: true
16
- });
17
-
18
- var u = _mobxStateTree.types.union(one, two);
19
-
20
- var names = (0, _util.getTypeNamesFromExplicitlyTypedUnion)(u);
21
- expect(names).toEqual(['One', 'Two']);
22
- });
23
- test('late config schemas', function () {
24
- var one = (0, _configurationSchema.ConfigurationSchema)('One', {}, {
25
- explicitlyTyped: true
26
- });
27
-
28
- var two = _mobxStateTree.types.late(function () {
29
- return (0, _configurationSchema.ConfigurationSchema)('Two', {}, {
30
- explicitlyTyped: true
31
- });
32
- });
33
-
34
- var u = _mobxStateTree.types.union(one, two);
35
-
36
- var names = (0, _util.getTypeNamesFromExplicitlyTypedUnion)(u);
37
- expect(names).toEqual(['One', 'Two']);
38
- });
39
- });
@@ -1,200 +0,0 @@
1
- "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
6
-
7
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
8
-
9
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
10
-
11
- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
12
-
13
- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
14
-
15
- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
16
-
17
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
18
-
19
- var _operators = require("rxjs/operators");
20
-
21
- var _BaseAdapter = require("./BaseAdapter");
22
-
23
- var _rxjs = require("../util/rxjs");
24
-
25
- var _simpleFeature = _interopRequireDefault(require("../util/simpleFeature"));
26
-
27
- var _configurationSchema = require("../configuration/configurationSchema");
28
-
29
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
30
-
31
- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
32
-
33
- describe('base data adapter', function () {
34
- it('properly propagates errors in feature fetching', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
35
- var Adapter, adapter, features, featuresArray;
36
- return _regenerator.default.wrap(function _callee2$(_context2) {
37
- while (1) {
38
- switch (_context2.prev = _context2.next) {
39
- case 0:
40
- Adapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
41
- (0, _inherits2.default)(Adapter, _BaseFeatureDataAdapt);
42
-
43
- var _super = _createSuper(Adapter);
44
-
45
- function Adapter() {
46
- (0, _classCallCheck2.default)(this, Adapter);
47
- return _super.apply(this, arguments);
48
- }
49
-
50
- (0, _createClass2.default)(Adapter, [{
51
- key: "getRefNames",
52
- value: function () {
53
- var _getRefNames = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
54
- return _regenerator.default.wrap(function _callee$(_context) {
55
- while (1) {
56
- switch (_context.prev = _context.next) {
57
- case 0:
58
- return _context.abrupt("return", ['ctgA', 'ctgB']);
59
-
60
- case 1:
61
- case "end":
62
- return _context.stop();
63
- }
64
- }
65
- }, _callee);
66
- }));
67
-
68
- function getRefNames() {
69
- return _getRefNames.apply(this, arguments);
70
- }
71
-
72
- return getRefNames;
73
- }()
74
- }, {
75
- key: "getFeatures",
76
- value: function getFeatures(_region) {
77
- return (0, _rxjs.ObservableCreate)(function () {
78
- return Promise.reject(new Error('something blew up'));
79
- });
80
- }
81
- }, {
82
- key: "freeResources",
83
- value: function freeResources() {}
84
- }]);
85
- return Adapter;
86
- }(_BaseAdapter.BaseFeatureDataAdapter);
87
-
88
- adapter = new Adapter((0, _configurationSchema.ConfigurationSchema)('empty', {}).create());
89
- features = adapter.getFeatures({
90
- assemblyName: 'volvox',
91
- refName: 'ctgA',
92
- start: 0,
93
- end: 20000
94
- });
95
- featuresArray = features.pipe((0, _operators.toArray)()).toPromise();
96
- expect(featuresArray).rejects.toThrow(/something blew up/);
97
-
98
- case 5:
99
- case "end":
100
- return _context2.stop();
101
- }
102
- }
103
- }, _callee2);
104
- })));
105
- it('retrieves features', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4() {
106
- var Adapter, adapter, features, featuresArray, features2, featuresArray2;
107
- return _regenerator.default.wrap(function _callee4$(_context4) {
108
- while (1) {
109
- switch (_context4.prev = _context4.next) {
110
- case 0:
111
- Adapter = /*#__PURE__*/function (_BaseFeatureDataAdapt2) {
112
- (0, _inherits2.default)(Adapter, _BaseFeatureDataAdapt2);
113
-
114
- var _super2 = _createSuper(Adapter);
115
-
116
- function Adapter() {
117
- (0, _classCallCheck2.default)(this, Adapter);
118
- return _super2.apply(this, arguments);
119
- }
120
-
121
- (0, _createClass2.default)(Adapter, [{
122
- key: "getRefNames",
123
- value: function () {
124
- var _getRefNames2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
125
- return _regenerator.default.wrap(function _callee3$(_context3) {
126
- while (1) {
127
- switch (_context3.prev = _context3.next) {
128
- case 0:
129
- return _context3.abrupt("return", ['ctgA', 'ctgB']);
130
-
131
- case 1:
132
- case "end":
133
- return _context3.stop();
134
- }
135
- }
136
- }, _callee3);
137
- }));
138
-
139
- function getRefNames() {
140
- return _getRefNames2.apply(this, arguments);
141
- }
142
-
143
- return getRefNames;
144
- }()
145
- }, {
146
- key: "getFeatures",
147
- value: function getFeatures(region) {
148
- return (0, _rxjs.ObservableCreate)(function (observer) {
149
- if (region.refName === 'ctgA') {
150
- observer.next(new _simpleFeature.default({
151
- uniqueId: 'testFeature',
152
- start: 100,
153
- end: 200
154
- }));
155
- }
156
-
157
- observer.complete();
158
- });
159
- }
160
- }, {
161
- key: "freeResources",
162
- value: function freeResources() {}
163
- }]);
164
- return Adapter;
165
- }(_BaseAdapter.BaseFeatureDataAdapter);
166
-
167
- adapter = new Adapter((0, _configurationSchema.ConfigurationSchema)('empty', {}).create());
168
- features = adapter.getFeatures({
169
- assemblyName: 'volvox',
170
- refName: 'ctgA',
171
- start: 0,
172
- end: 20000
173
- });
174
- _context4.next = 5;
175
- return features.pipe((0, _operators.toArray)()).toPromise();
176
-
177
- case 5:
178
- featuresArray = _context4.sent;
179
- expect(featuresArray).toMatchInlineSnapshot("\n Array [\n Object {\n \"end\": 200,\n \"start\": 100,\n \"uniqueId\": \"testFeature\",\n },\n ]\n ");
180
- features2 = adapter.getFeatures({
181
- assemblyName: 'volvox',
182
- refName: 'ctgC',
183
- start: 0,
184
- end: 20000
185
- });
186
- _context4.next = 10;
187
- return features2.pipe((0, _operators.toArray)()).toPromise();
188
-
189
- case 10:
190
- featuresArray2 = _context4.sent;
191
- expect(featuresArray2).toMatchInlineSnapshot('Array []');
192
-
193
- case 12:
194
- case "end":
195
- return _context4.stop();
196
- }
197
- }
198
- }, _callee4);
199
- })));
200
- });
package/declare.d.js DELETED
@@ -1 +0,0 @@
1
- "use strict";
@@ -1,118 +0,0 @@
1
- "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- Object.defineProperty(exports, "__esModule", {
6
- value: true
7
- });
8
- exports.MockRpcMethodType = void 0;
9
-
10
- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
-
12
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
13
-
14
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
15
-
16
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
17
-
18
- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
19
-
20
- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
21
-
22
- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
23
-
24
- var _PluginManager = _interopRequireDefault(require("../PluginManager"));
25
-
26
- var _RpcMethodType2 = _interopRequireDefault(require("./RpcMethodType"));
27
-
28
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
29
-
30
- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
31
-
32
- var pluginManager = new _PluginManager.default();
33
-
34
- var MockRpcMethodType = /*#__PURE__*/function (_RpcMethodType) {
35
- (0, _inherits2.default)(MockRpcMethodType, _RpcMethodType);
36
-
37
- var _super = _createSuper(MockRpcMethodType);
38
-
39
- function MockRpcMethodType() {
40
- (0, _classCallCheck2.default)(this, MockRpcMethodType);
41
- return _super.apply(this, arguments);
42
- }
43
-
44
- (0, _createClass2.default)(MockRpcMethodType, [{
45
- key: "execute",
46
- value: function () {
47
- var _execute = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
48
- return _regenerator.default.wrap(function _callee$(_context) {
49
- while (1) {
50
- switch (_context.prev = _context.next) {
51
- case 0:
52
- case "end":
53
- return _context.stop();
54
- }
55
- }
56
- }, _callee);
57
- }));
58
-
59
- function execute() {
60
- return _execute.apply(this, arguments);
61
- }
62
-
63
- return execute;
64
- }()
65
- }]);
66
- return MockRpcMethodType;
67
- }(_RpcMethodType2.default);
68
-
69
- exports.MockRpcMethodType = MockRpcMethodType;
70
- test('test serialize arguments with augmentLocationObject', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
71
- var mockRpc, locationInAdapter, deeplyNestedLocation;
72
- return _regenerator.default.wrap(function _callee2$(_context2) {
73
- while (1) {
74
- switch (_context2.prev = _context2.next) {
75
- case 0:
76
- mockRpc = new MockRpcMethodType(pluginManager);
77
- mockRpc.serializeNewAuthArguments = jest.fn().mockReturnValue({
78
- locationType: 'UriLocation',
79
- uri: 'test',
80
- internetAccountId: 'HTTPBasicInternetAccount-test'
81
- });
82
- locationInAdapter = {
83
- locationType: 'UriLocation',
84
- uri: 'test',
85
- internetAccountId: 'HTTPBasicInternetAccount-test'
86
- };
87
- deeplyNestedLocation = {
88
- locationType: 'UriLocation',
89
- uri: 'test2',
90
- internetAccountId: 'HTTPBasicInternetAccount-test2'
91
- };
92
- _context2.next = 6;
93
- return mockRpc.serializeArguments({
94
- adapter: {
95
- testLocation: locationInAdapter
96
- },
97
- filters: [],
98
- signal: 'teststring',
99
- randomProperty: 'randomstring',
100
- parentObject: {
101
- nestedObject: {
102
- arrayInNestedObject: [deeplyNestedLocation]
103
- }
104
- }
105
- }, '');
106
-
107
- case 6:
108
- expect(mockRpc.serializeNewAuthArguments).toHaveBeenCalledTimes(2);
109
- expect(mockRpc.serializeNewAuthArguments).toHaveBeenCalledWith(locationInAdapter);
110
- expect(mockRpc.serializeNewAuthArguments).toHaveBeenCalledWith(deeplyNestedLocation);
111
-
112
- case 9:
113
- case "end":
114
- return _context2.stop();
115
- }
116
- }
117
- }, _callee2);
118
- })));