@jbrowse/core 2.0.1 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (179) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +6 -0
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +313 -592
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +213 -479
  4. package/BaseFeatureWidget/index.js +88 -126
  5. package/BaseFeatureWidget/types.js +1 -4
  6. package/BaseFeatureWidget/util.js +40 -75
  7. package/CorePlugin.js +55 -94
  8. package/Plugin.js +9 -34
  9. package/PluginLoader.js +153 -422
  10. package/PluginManager.d.ts +17 -14
  11. package/PluginManager.js +377 -666
  12. package/ReExports/Attributes.js +3 -10
  13. package/ReExports/BaseCard.js +3 -10
  14. package/ReExports/DataGrid.js +5 -12
  15. package/ReExports/FeatureDetails.js +3 -10
  16. package/ReExports/index.js +6 -12
  17. package/ReExports/list.d.ts +5 -0
  18. package/ReExports/list.js +271 -7
  19. package/ReExports/material-ui-colors.js +15 -16
  20. package/ReExports/modules.d.ts +0 -1
  21. package/ReExports/modules.js +453 -798
  22. package/TextSearch/BaseResults.js +51 -123
  23. package/TextSearch/TextSearchManager.js +66 -144
  24. package/assemblyManager/assembly.js +280 -555
  25. package/assemblyManager/assemblyConfigSchema.js +47 -64
  26. package/assemblyManager/assemblyManager.js +126 -272
  27. package/assemblyManager/index.js +9 -22
  28. package/configuration/configurationSchema.js +167 -203
  29. package/configuration/configurationSlot.js +248 -326
  30. package/configuration/index.js +19 -35
  31. package/configuration/util.js +131 -173
  32. package/data_adapters/BaseAdapter.d.ts +2 -2
  33. package/data_adapters/BaseAdapter.js +132 -521
  34. package/data_adapters/CytobandAdapter.js +40 -126
  35. package/data_adapters/dataAdapterCache.js +77 -158
  36. package/package.json +4 -5
  37. package/pluggableElementTypes/AdapterType.js +24 -79
  38. package/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
  39. package/pluggableElementTypes/AddTrackWorkflowType.js +20 -0
  40. package/pluggableElementTypes/ConnectionType.js +22 -65
  41. package/pluggableElementTypes/DisplayType.js +35 -82
  42. package/pluggableElementTypes/InternetAccountType.js +23 -64
  43. package/pluggableElementTypes/PluggableElementBase.js +8 -20
  44. package/pluggableElementTypes/RpcMethodType.js +85 -427
  45. package/pluggableElementTypes/TextSearchAdapterType.js +16 -55
  46. package/pluggableElementTypes/TrackType.js +26 -70
  47. package/pluggableElementTypes/ViewType.js +21 -63
  48. package/pluggableElementTypes/WidgetType.js +21 -64
  49. package/pluggableElementTypes/index.d.ts +4 -3
  50. package/pluggableElementTypes/index.js +42 -125
  51. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +28 -43
  52. package/pluggableElementTypes/models/BaseDisplayModel.js +58 -95
  53. package/pluggableElementTypes/models/BaseTrackModel.js +139 -199
  54. package/pluggableElementTypes/models/BaseViewModel.js +24 -40
  55. package/pluggableElementTypes/models/InternetAccountModel.js +116 -263
  56. package/pluggableElementTypes/models/baseConnectionConfig.js +14 -25
  57. package/pluggableElementTypes/models/baseInternetAccountConfig.js +29 -38
  58. package/pluggableElementTypes/models/baseTrackConfig.js +106 -133
  59. package/pluggableElementTypes/models/index.js +21 -70
  60. package/pluggableElementTypes/renderers/BoxRendererType.js +132 -291
  61. package/pluggableElementTypes/renderers/CircularChordRendererType.js +8 -38
  62. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +60 -192
  63. package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -2
  64. package/pluggableElementTypes/renderers/FeatureRendererType.js +89 -264
  65. package/pluggableElementTypes/renderers/RendererType.js +31 -105
  66. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +61 -72
  67. package/pluggableElementTypes/renderers/ServerSideRendererType.js +112 -265
  68. package/pluggableElementTypes/renderers/index.js +19 -62
  69. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +27 -65
  70. package/rpc/BaseRpcDriver.js +169 -405
  71. package/rpc/MainThreadRpcDriver.js +27 -150
  72. package/rpc/RpcManager.js +58 -159
  73. package/rpc/WebWorkerRpcDriver.js +54 -171
  74. package/rpc/configSchema.js +25 -49
  75. package/rpc/coreRpcMethods.js +221 -959
  76. package/rpc/remoteAbortSignals.js +46 -70
  77. package/tsconfig.build.tsbuildinfo +1 -1
  78. package/ui/AboutDialog.js +106 -162
  79. package/ui/App.js +157 -242
  80. package/ui/AssemblySelector.js +59 -120
  81. package/ui/CascadingMenu.js +101 -196
  82. package/ui/ColorPicker.d.ts +16 -0
  83. package/ui/ColorPicker.js +97 -0
  84. package/ui/Drawer.js +28 -61
  85. package/ui/DrawerWidget.js +108 -202
  86. package/ui/DropDownMenu.js +60 -91
  87. package/ui/EditableTypography.js +87 -149
  88. package/ui/ErrorMessage.js +41 -56
  89. package/ui/FactoryResetDialog.js +24 -57
  90. package/ui/FatalErrorDialog.js +59 -91
  91. package/ui/FileSelector/FileSelector.js +123 -189
  92. package/ui/FileSelector/LocalFileChooser.js +44 -75
  93. package/ui/FileSelector/UrlChooser.js +17 -38
  94. package/ui/FileSelector/index.js +6 -12
  95. package/ui/Icons.js +45 -69
  96. package/ui/Logo.js +57 -110
  97. package/ui/Menu.js +232 -354
  98. package/ui/PrerenderedCanvas.js +63 -87
  99. package/ui/ResizeHandle.js +87 -116
  100. package/ui/ReturnToImportFormDialog.js +32 -63
  101. package/ui/SanitizedHTML.js +64 -47
  102. package/ui/Snackbar.js +74 -101
  103. package/ui/SnackbarModel.js +37 -51
  104. package/ui/Tooltip.js +49 -76
  105. package/ui/ViewContainer.js +113 -196
  106. package/ui/colors.d.ts +10 -0
  107. package/ui/colors.js +78 -0
  108. package/ui/index.js +51 -181
  109. package/ui/react-colorful.d.ts +17 -0
  110. package/ui/react-colorful.js +455 -0
  111. package/ui/theme.js +199 -247
  112. package/util/Base1DUtils.js +163 -202
  113. package/util/Base1DViewModel.js +121 -168
  114. package/util/QuickLRU.js +84 -332
  115. package/util/TimeTraveller.d.ts +19 -0
  116. package/util/TimeTraveller.js +86 -0
  117. package/util/aborting.js +49 -127
  118. package/util/analytics.js +91 -154
  119. package/util/blockTypes.js +106 -240
  120. package/util/calculateDynamicBlocks.js +98 -128
  121. package/util/calculateStaticBlocks.js +105 -125
  122. package/util/color/cssColorsLevel4.js +156 -160
  123. package/util/color/index.js +33 -55
  124. package/util/compositeMap.js +49 -333
  125. package/util/formatFastaStrings.js +9 -14
  126. package/util/idMaker.js +18 -31
  127. package/util/index.d.ts +7 -20
  128. package/util/index.js +742 -1188
  129. package/util/io/RemoteFileWithRangeCache.js +88 -257
  130. package/util/io/index.js +95 -169
  131. package/util/jexl.js +60 -115
  132. package/util/jexlStrings.js +24 -29
  133. package/util/layouts/BaseLayout.js +1 -4
  134. package/util/layouts/GranularRectLayout.js +388 -555
  135. package/util/layouts/MultiLayout.js +41 -109
  136. package/util/layouts/PrecomputedLayout.js +56 -112
  137. package/util/layouts/PrecomputedMultiLayout.js +22 -59
  138. package/util/layouts/SceneGraph.js +127 -197
  139. package/util/layouts/index.js +29 -66
  140. package/util/mst-reflection.js +55 -71
  141. package/util/offscreenCanvasPonyfill.js +66 -134
  142. package/util/offscreenCanvasUtils.d.ts +2 -7
  143. package/util/offscreenCanvasUtils.js +49 -146
  144. package/util/range.js +29 -40
  145. package/util/rxjs.js +20 -27
  146. package/util/simpleFeature.js +88 -152
  147. package/util/stats.js +91 -151
  148. package/util/tracks.js +130 -173
  149. package/util/types/index.js +110 -179
  150. package/util/types/mst.js +91 -146
  151. package/util/types/util.js +1 -4
  152. package/util/when.js +54 -101
  153. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +0 -122
  154. package/BaseFeatureWidget/index.test.js +0 -69
  155. package/TextSearch/BaseResults.test.js +0 -42
  156. package/configuration/configurationSchema.test.js +0 -266
  157. package/configuration/configurationSlot.test.js +0 -69
  158. package/configuration/util.test.js +0 -39
  159. package/data_adapters/BaseAdapter.test.js +0 -200
  160. package/declare.d.js +0 -1
  161. package/pluggableElementTypes/RpcMethodType.test.js +0 -118
  162. package/pluggableElementTypes/renderers/declare.d.js +0 -1
  163. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +0 -20
  164. package/rpc/BaseRpcDriver.test.js +0 -540
  165. package/rpc/declaration.d.js +0 -1
  166. package/ui/FatalErrorDialog.test.js +0 -82
  167. package/ui/SanitizedHTML.test.js +0 -36
  168. package/ui/theme.test.js +0 -92
  169. package/util/Base1DViewModel.test.js +0 -130
  170. package/util/calculateDynamicBlocks.test.js +0 -74
  171. package/util/calculateStaticBlocks.test.js +0 -297
  172. package/util/declare.d.js +0 -1
  173. package/util/formatFastaStrings.test.js +0 -40
  174. package/util/index.test.js +0 -213
  175. package/util/jexlStrings.test.js +0 -48
  176. package/util/layouts/GranularRectLayout.test.js +0 -99
  177. package/util/range.test.js +0 -64
  178. package/util/simpleFeature.test.js +0 -34
  179. package/util/stats.test.js +0 -172
@@ -1,216 +1,133 @@
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  "use strict";
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-
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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-
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- var _typeof = require("@babel/runtime/helpers/typeof");
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-
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- Object.defineProperty(exports, "__esModule", {
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- value: true
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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  });
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- exports.default = void 0;
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-
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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-
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- var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
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-
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- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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-
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- var _react = _interopRequireWildcard(require("react"));
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-
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- var _material = require("@mui/material");
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-
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- var _mui = require("tss-react/mui");
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-
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- var _styles = require("@mui/material/styles");
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-
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- var _mobxReact = require("mobx-react");
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-
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- var _mobxStateTree = require("mobx-state-tree");
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-
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- var _reactUseMeasure = _interopRequireDefault(require("react-use-measure"));
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-
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- var _Close = _interopRequireDefault(require("@mui/icons-material/Close"));
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-
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- var _Menu = _interopRequireDefault(require("@mui/icons-material/Menu"));
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-
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- var _EditableTypography = _interopRequireDefault(require("./EditableTypography"));
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-
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- var _Menu2 = _interopRequireDefault(require("./Menu"));
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-
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- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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-
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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-
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- function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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-
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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-
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- var useStyles = (0, _mui.makeStyles)()(function (theme) {
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- return {
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+ var __importStar = (this && this.__importStar) || function (mod) {
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+ if (mod && mod.__esModule) return mod;
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+ var result = {};
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+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
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+ __setModuleDefault(result, mod);
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+ return result;
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+ };
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+ var __importDefault = (this && this.__importDefault) || function (mod) {
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+ return (mod && mod.__esModule) ? mod : { "default": mod };
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ const react_1 = __importStar(require("react"));
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+ const material_1 = require("@mui/material");
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+ const mui_1 = require("tss-react/mui");
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+ const styles_1 = require("@mui/material/styles");
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+ const mobx_react_1 = require("mobx-react");
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+ const mobx_state_tree_1 = require("mobx-state-tree");
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+ const react_use_measure_1 = __importDefault(require("react-use-measure"));
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+ // icons
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+ const Close_1 = __importDefault(require("@mui/icons-material/Close"));
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+ const Menu_1 = __importDefault(require("@mui/icons-material/Menu"));
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+ const EditableTypography_1 = __importDefault(require("./EditableTypography"));
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+ const Menu_2 = __importDefault(require("./Menu"));
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+ const useStyles = (0, mui_1.makeStyles)()(theme => ({
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  viewContainer: {
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- overflow: 'hidden',
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- background: theme.palette.secondary.main,
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- margin: theme.spacing(0.5)
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+ overflow: 'hidden',
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+ background: theme.palette.secondary.main,
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+ margin: theme.spacing(0.5),
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  },
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  icon: {
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- color: theme.palette.secondary.contrastText
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+ color: theme.palette.secondary.contrastText,
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  },
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  grow: {
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- flexGrow: 1
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+ flexGrow: 1,
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  },
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  iconRoot: {
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- '&:hover': {
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- backgroundColor: (0, _styles.alpha)(theme.palette.secondary.contrastText, theme.palette.action.hoverOpacity),
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- '@media (hover: none)': {
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- backgroundColor: 'transparent'
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- }
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- }
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+ '&:hover': {
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+ backgroundColor: (0, styles_1.alpha)(theme.palette.secondary.contrastText, theme.palette.action.hoverOpacity),
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+ '@media (hover: none)': {
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+ backgroundColor: 'transparent',
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+ },
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+ },
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  },
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  input: {
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- paddingBottom: 0,
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- paddingTop: 2
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+ paddingBottom: 0,
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+ paddingTop: 2,
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  },
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  inputBase: {
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- color: theme.palette.secondary.contrastText
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+ color: theme.palette.secondary.contrastText,
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  },
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  inputRoot: {
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- '&:hover': {
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- backgroundColor: theme.palette.secondary.light
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- }
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+ '&:hover': {
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+ backgroundColor: theme.palette.secondary.light,
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+ },
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  },
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  inputFocused: {
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- borderColor: theme.palette.primary.main,
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- backgroundColor: theme.palette.secondary.light
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- }
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- };
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- });
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- var ViewMenu = (0, _mobxReact.observer)(function (_ref) {
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- var model = _ref.model,
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- IconButtonProps = _ref.IconButtonProps,
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- IconProps = _ref.IconProps;
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-
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- var _useState = (0, _react.useState)(),
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- _useState2 = (0, _slicedToArray2.default)(_useState, 2),
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- anchorEl = _useState2[0],
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- setAnchorEl = _useState2[1];
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-
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- var menuItems = model.menuItems; // <=1.3.3 didn't use a function
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-
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- var items = typeof menuItems === 'function' ? menuItems() : menuItems;
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- return items !== null && items !== void 0 && items.length ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_material.IconButton, (0, _extends2.default)({}, IconButtonProps, {
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- style: {
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- padding: 3
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+ borderColor: theme.palette.primary.main,
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+ backgroundColor: theme.palette.secondary.light,
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  },
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- onClick: function onClick(event) {
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- return setAnchorEl(event.currentTarget);
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- },
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- "data-testid": "view_menu_icon",
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- size: "small"
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- }), /*#__PURE__*/_react.default.createElement(_Menu.default, (0, _extends2.default)({}, IconProps, {
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- fontSize: "small"
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- }))), /*#__PURE__*/_react.default.createElement(_Menu2.default, {
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- anchorEl: anchorEl,
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- open: Boolean(anchorEl),
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- onMenuItemClick: function onMenuItemClick(_event, callback) {
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- callback();
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- setAnchorEl(undefined);
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- },
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- onClose: function onClose() {
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- return setAnchorEl(undefined);
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- },
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- menuItems: model.menuItems()
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- })) : null;
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+ }));
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+ const ViewMenu = (0, mobx_react_1.observer)(({ model, IconButtonProps, IconProps, }) => {
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+ const [anchorEl, setAnchorEl] = (0, react_1.useState)();
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+ const { menuItems } = model;
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+ // <=1.3.3 didn't use a function
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+ const items = typeof menuItems === 'function' ? menuItems() : menuItems;
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+ return (items === null || items === void 0 ? void 0 : items.length) ? (react_1.default.createElement(react_1.default.Fragment, null,
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+ react_1.default.createElement(material_1.IconButton, { ...IconButtonProps, style: { padding: 3 }, onClick: event => setAnchorEl(event.currentTarget), "data-testid": "view_menu_icon", size: "small" },
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+ react_1.default.createElement(Menu_1.default, { ...IconProps, fontSize: "small" })),
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+ react_1.default.createElement(Menu_2.default, { anchorEl: anchorEl, open: Boolean(anchorEl), onMenuItemClick: (_event, callback) => {
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+ callback();
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+ setAnchorEl(undefined);
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+ }, onClose: () => setAnchorEl(undefined), menuItems: model.menuItems() }))) : null;
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  });
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- var ViewContainer = (0, _mobxReact.observer)(function (_ref2) {
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- var _view$assemblyNames;
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-
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- var view = _ref2.view,
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- onClose = _ref2.onClose,
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- style = _ref2.style,
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- children = _ref2.children;
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-
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- var _useStyles = useStyles(),
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- classes = _useStyles.classes;
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-
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- var theme = (0, _material.useTheme)();
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- var padWidth = theme.spacing(1);
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-
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- var _useMeasure = (0, _reactUseMeasure.default)(),
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- _useMeasure2 = (0, _slicedToArray2.default)(_useMeasure, 2),
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- ref = _useMeasure2[0],
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- width = _useMeasure2[1].width;
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- (0, _react.useEffect)(function () {
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- if (width && (0, _mobxStateTree.isAlive)(view)) {
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- view.setWidth(width - parseInt(padWidth, 10) * 2);
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- }
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- }, [padWidth, view, width]);
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- var scrollRef = (0, _react.useRef)(null); // scroll the view into view when first mounted
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- // note that this effect will run only once, because of
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- // the empty array second param
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-
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- (0, _react.useEffect)(function () {
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- var _scrollRef$current, _scrollRef$current$sc;
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-
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- (_scrollRef$current = scrollRef.current) === null || _scrollRef$current === void 0 ? void 0 : (_scrollRef$current$sc = _scrollRef$current.scrollIntoView) === null || _scrollRef$current$sc === void 0 ? void 0 : _scrollRef$current$sc.call(_scrollRef$current, {
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- block: 'center'
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- });
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- }, []);
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- return /*#__PURE__*/_react.default.createElement(_material.Paper, {
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- ref: ref,
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- elevation: 12,
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- className: classes.viewContainer,
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- style: _objectSpread(_objectSpread({}, style), {}, {
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- padding: "0px ".concat(padWidth, " ").concat(padWidth)
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- })
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- }, /*#__PURE__*/_react.default.createElement("div", {
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- ref: scrollRef,
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- style: {
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- display: 'flex'
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- }
171
- }, /*#__PURE__*/_react.default.createElement(ViewMenu, {
172
- model: view,
173
- IconButtonProps: {
174
- classes: {
175
- root: classes.iconRoot
176
- },
177
- edge: 'start'
178
- },
179
- IconProps: {
180
- className: classes.icon
181
- }
182
- }), /*#__PURE__*/_react.default.createElement("div", {
183
- className: classes.grow
184
- }), /*#__PURE__*/_react.default.createElement(_material.Tooltip, {
185
- title: "Rename view",
186
- arrow: true
187
- }, /*#__PURE__*/_react.default.createElement(_EditableTypography.default, {
188
- value: view.displayName || ( // @ts-ignore
189
- (_view$assemblyNames = view.assemblyNames) === null || _view$assemblyNames === void 0 ? void 0 : _view$assemblyNames.join(',')) || 'Untitled view',
190
- setValue: function setValue(val) {
191
- return view.setDisplayName(val);
192
- },
193
- variant: "body2",
194
- classes: {
195
- input: classes.input,
196
- inputBase: classes.inputBase,
197
- inputRoot: classes.inputRoot,
198
- inputFocused: classes.inputFocused
199
- }
200
- })), /*#__PURE__*/_react.default.createElement("div", {
201
- className: classes.grow
202
- }), /*#__PURE__*/_react.default.createElement(_material.IconButton, {
203
- "data-testid": "close_view",
204
- classes: {
205
- root: classes.iconRoot
206
- },
207
- edge: "end",
208
- size: "small",
209
- onClick: onClose
210
- }, /*#__PURE__*/_react.default.createElement(_Close.default, {
211
- className: classes.icon,
212
- fontSize: "small"
213
- }))), /*#__PURE__*/_react.default.createElement(_material.Paper, null, children));
91
+ const ViewContainer = (0, mobx_react_1.observer)(({ view, onClose, style, children, }) => {
92
+ var _a;
93
+ const { classes } = useStyles();
94
+ const theme = (0, material_1.useTheme)();
95
+ const padWidth = theme.spacing(1);
96
+ const [ref, { width }] = (0, react_use_measure_1.default)();
97
+ (0, react_1.useEffect)(() => {
98
+ if (width && (0, mobx_state_tree_1.isAlive)(view)) {
99
+ view.setWidth(width - parseInt(padWidth, 10) * 2);
100
+ }
101
+ }, [padWidth, view, width]);
102
+ const scrollRef = (0, react_1.useRef)(null);
103
+ // scroll the view into view when first mounted
104
+ // note that this effect will run only once, because of
105
+ // the empty array second param
106
+ (0, react_1.useEffect)(() => {
107
+ var _a, _b;
108
+ (_b = (_a = scrollRef.current) === null || _a === void 0 ? void 0 : _a.scrollIntoView) === null || _b === void 0 ? void 0 : _b.call(_a, { block: 'center' });
109
+ }, []);
110
+ return (react_1.default.createElement(material_1.Paper, { ref: ref, elevation: 12, className: classes.viewContainer, style: { ...style, padding: `0px ${padWidth} ${padWidth}` } },
111
+ react_1.default.createElement("div", { ref: scrollRef, style: { display: 'flex' } },
112
+ react_1.default.createElement(ViewMenu, { model: view, IconButtonProps: {
113
+ classes: { root: classes.iconRoot },
114
+ edge: 'start',
115
+ }, IconProps: { className: classes.icon } }),
116
+ react_1.default.createElement("div", { className: classes.grow }),
117
+ react_1.default.createElement(material_1.Tooltip, { title: "Rename view", arrow: true },
118
+ react_1.default.createElement(EditableTypography_1.default, { value: view.displayName ||
119
+ (
120
+ // @ts-ignore
121
+ (_a = view.assemblyNames) === null || _a === void 0 ? void 0 : _a.join(',')) ||
122
+ 'Untitled view', setValue: val => view.setDisplayName(val), variant: "body2", classes: {
123
+ input: classes.input,
124
+ inputBase: classes.inputBase,
125
+ inputRoot: classes.inputRoot,
126
+ inputFocused: classes.inputFocused,
127
+ } })),
128
+ react_1.default.createElement("div", { className: classes.grow }),
129
+ react_1.default.createElement(material_1.IconButton, { "data-testid": "close_view", classes: { root: classes.iconRoot }, edge: "end", size: "small", onClick: onClose },
130
+ react_1.default.createElement(Close_1.default, { className: classes.icon, fontSize: "small" }))),
131
+ react_1.default.createElement(material_1.Paper, null, children)));
214
132
  });
215
- var _default = ViewContainer;
216
- exports.default = _default;
133
+ exports.default = ViewContainer;
package/ui/colors.d.ts ADDED
@@ -0,0 +1,10 @@
1
+ declare const category10: string[];
2
+ declare const dark2: string[];
3
+ declare const set1: string[];
4
+ declare const set2: string[];
5
+ declare const tableau10: string[];
6
+ declare const ggplot2Colors6: string[];
7
+ declare const ggplot2Colors5: string[];
8
+ declare const ggplot2Colors4: string[];
9
+ declare const ggplot2Colors3: string[];
10
+ export { set1, set2, tableau10, dark2, category10, ggplot2Colors6, ggplot2Colors5, ggplot2Colors4, ggplot2Colors3, };
package/ui/colors.js ADDED
@@ -0,0 +1,78 @@
1
+ "use strict";
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ exports.ggplot2Colors3 = exports.ggplot2Colors4 = exports.ggplot2Colors5 = exports.ggplot2Colors6 = exports.category10 = exports.dark2 = exports.tableau10 = exports.set2 = exports.set1 = void 0;
4
+ const category10 = [
5
+ '#1f77b4',
6
+ '#ff7f0e',
7
+ '#2ca02c',
8
+ '#d62728',
9
+ '#9467bd',
10
+ '#8c564b',
11
+ '#e377c2',
12
+ '#7f7f7f',
13
+ '#bcbd22',
14
+ '#17becf',
15
+ ];
16
+ exports.category10 = category10;
17
+ const dark2 = [
18
+ '#1b9e77',
19
+ '#d95f02',
20
+ '#7570b3',
21
+ '#e7298a',
22
+ '#66a61e',
23
+ '#e6ab02',
24
+ '#a6761d',
25
+ '#666666',
26
+ ];
27
+ exports.dark2 = dark2;
28
+ const set1 = [
29
+ '#e41a1c',
30
+ '#377eb8',
31
+ '#4daf4a',
32
+ '#984ea3',
33
+ '#ff7f00',
34
+ '#ffff33',
35
+ '#a65628',
36
+ '#f781bf',
37
+ '#999999',
38
+ ];
39
+ exports.set1 = set1;
40
+ const set2 = [
41
+ '#66c2a5',
42
+ '#fc8d62',
43
+ '#8da0cb',
44
+ '#e78ac3',
45
+ '#a6d854',
46
+ '#ffd92f',
47
+ '#e5c494',
48
+ '#b3b3b3',
49
+ ];
50
+ exports.set2 = set2;
51
+ const tableau10 = [
52
+ '#4e79a7',
53
+ '#f28e2c',
54
+ '#e15759',
55
+ '#76b7b2',
56
+ '#59a14f',
57
+ '#edc949',
58
+ '#af7aa1',
59
+ '#ff9da7',
60
+ '#9c755f',
61
+ '#bab0ab',
62
+ ];
63
+ exports.tableau10 = tableau10;
64
+ const ggplot2Colors6 = [
65
+ '#F8766D',
66
+ '#B79F00',
67
+ '#00BA38',
68
+ '#00BFC4',
69
+ '#619CFF',
70
+ '#F564E3',
71
+ ];
72
+ exports.ggplot2Colors6 = ggplot2Colors6;
73
+ const ggplot2Colors5 = ['#F8766D', '#A3A500', '#00BF7D', '#00B0F6', '#E76BF3'];
74
+ exports.ggplot2Colors5 = ggplot2Colors5;
75
+ const ggplot2Colors4 = ['#F8766D', '#7CAE00', '#00BFC4', '#C77CFF'];
76
+ exports.ggplot2Colors4 = ggplot2Colors4;
77
+ const ggplot2Colors3 = ['#F8766D', '#00BA38', '#619CFF'];
78
+ exports.ggplot2Colors3 = ggplot2Colors3;
package/ui/index.js CHANGED
@@ -1,183 +1,53 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- var _typeof = require("@babel/runtime/helpers/typeof");
6
-
7
- Object.defineProperty(exports, "__esModule", {
8
- value: true
9
- });
10
- var _exportNames = {
11
- LogoFull: true,
12
- Logomark: true,
13
- App: true,
14
- ReturnToImportFormDialog: true,
15
- ErrorMessage: true,
16
- AssemblySelector: true,
17
- FileSelector: true,
18
- PrerenderedCanvas: true,
19
- ResizeHandle: true,
20
- EditableTypography: true,
21
- FactoryResetDialog: true,
22
- Tooltip: true,
23
- FatalErrorDialog: true,
24
- Menu: true,
25
- CascadingMenu: true,
26
- SanitizedHTML: true
27
- };
28
- Object.defineProperty(exports, "App", {
29
- enumerable: true,
30
- get: function get() {
31
- return _App.default;
32
- }
33
- });
34
- Object.defineProperty(exports, "AssemblySelector", {
35
- enumerable: true,
36
- get: function get() {
37
- return _AssemblySelector.default;
38
- }
39
- });
40
- Object.defineProperty(exports, "CascadingMenu", {
41
- enumerable: true,
42
- get: function get() {
43
- return _CascadingMenu.default;
44
- }
45
- });
46
- Object.defineProperty(exports, "EditableTypography", {
47
- enumerable: true,
48
- get: function get() {
49
- return _EditableTypography.default;
50
- }
51
- });
52
- Object.defineProperty(exports, "ErrorMessage", {
53
- enumerable: true,
54
- get: function get() {
55
- return _ErrorMessage.default;
56
- }
57
- });
58
- Object.defineProperty(exports, "FactoryResetDialog", {
59
- enumerable: true,
60
- get: function get() {
61
- return _FactoryResetDialog.default;
62
- }
63
- });
64
- Object.defineProperty(exports, "FatalErrorDialog", {
65
- enumerable: true,
66
- get: function get() {
67
- return _FatalErrorDialog.default;
68
- }
69
- });
70
- Object.defineProperty(exports, "FileSelector", {
71
- enumerable: true,
72
- get: function get() {
73
- return _FileSelector.default;
74
- }
75
- });
76
- Object.defineProperty(exports, "LogoFull", {
77
- enumerable: true,
78
- get: function get() {
79
- return _Logo.LogoFull;
80
- }
81
- });
82
- Object.defineProperty(exports, "Logomark", {
83
- enumerable: true,
84
- get: function get() {
85
- return _Logo.Logomark;
86
- }
87
- });
88
- Object.defineProperty(exports, "Menu", {
89
- enumerable: true,
90
- get: function get() {
91
- return _Menu.default;
92
- }
93
- });
94
- Object.defineProperty(exports, "PrerenderedCanvas", {
95
- enumerable: true,
96
- get: function get() {
97
- return _PrerenderedCanvas.default;
98
- }
99
- });
100
- Object.defineProperty(exports, "ResizeHandle", {
101
- enumerable: true,
102
- get: function get() {
103
- return _ResizeHandle.default;
104
- }
105
- });
106
- Object.defineProperty(exports, "ReturnToImportFormDialog", {
107
- enumerable: true,
108
- get: function get() {
109
- return _ReturnToImportFormDialog.default;
110
- }
111
- });
112
- Object.defineProperty(exports, "SanitizedHTML", {
113
- enumerable: true,
114
- get: function get() {
115
- return _SanitizedHTML.default;
116
- }
117
- });
118
- Object.defineProperty(exports, "Tooltip", {
119
- enumerable: true,
120
- get: function get() {
121
- return _Tooltip.default;
122
- }
123
- });
124
-
125
- var _theme = require("./theme");
126
-
127
- Object.keys(_theme).forEach(function (key) {
128
- if (key === "default" || key === "__esModule") return;
129
- if (Object.prototype.hasOwnProperty.call(_exportNames, key)) return;
130
- if (key in exports && exports[key] === _theme[key]) return;
131
- Object.defineProperty(exports, key, {
132
- enumerable: true,
133
- get: function get() {
134
- return _theme[key];
135
- }
136
- });
137
- });
138
-
139
- var _Logo = require("./Logo");
140
-
141
- var _App = _interopRequireDefault(require("./App"));
142
-
143
- var _ReturnToImportFormDialog = _interopRequireDefault(require("./ReturnToImportFormDialog"));
144
-
145
- var _ErrorMessage = _interopRequireDefault(require("./ErrorMessage"));
146
-
147
- var _AssemblySelector = _interopRequireDefault(require("./AssemblySelector"));
148
-
149
- var _FileSelector = _interopRequireDefault(require("./FileSelector"));
150
-
151
- var _PrerenderedCanvas = _interopRequireDefault(require("./PrerenderedCanvas"));
152
-
153
- var _ResizeHandle = _interopRequireDefault(require("./ResizeHandle"));
154
-
155
- var _EditableTypography = _interopRequireDefault(require("./EditableTypography"));
156
-
157
- var _FactoryResetDialog = _interopRequireDefault(require("./FactoryResetDialog"));
158
-
159
- var _Tooltip = _interopRequireDefault(require("./Tooltip"));
160
-
161
- var _FatalErrorDialog = _interopRequireDefault(require("./FatalErrorDialog"));
162
-
163
- var _Menu = _interopRequireWildcard(require("./Menu"));
164
-
165
- Object.keys(_Menu).forEach(function (key) {
166
- if (key === "default" || key === "__esModule") return;
167
- if (Object.prototype.hasOwnProperty.call(_exportNames, key)) return;
168
- if (key in exports && exports[key] === _Menu[key]) return;
169
- Object.defineProperty(exports, key, {
170
- enumerable: true,
171
- get: function get() {
172
- return _Menu[key];
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
173
7
  }
174
- });
175
- });
176
-
177
- var _CascadingMenu = _interopRequireDefault(require("./CascadingMenu"));
178
-
179
- var _SanitizedHTML = _interopRequireDefault(require("./SanitizedHTML"));
180
-
181
- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
182
-
183
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __exportStar = (this && this.__exportStar) || function(m, exports) {
14
+ for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
15
+ };
16
+ var __importDefault = (this && this.__importDefault) || function (mod) {
17
+ return (mod && mod.__esModule) ? mod : { "default": mod };
18
+ };
19
+ Object.defineProperty(exports, "__esModule", { value: true });
20
+ exports.SanitizedHTML = exports.CascadingMenu = exports.Menu = exports.FatalErrorDialog = exports.Tooltip = exports.FactoryResetDialog = exports.EditableTypography = exports.ResizeHandle = exports.PrerenderedCanvas = exports.FileSelector = exports.AssemblySelector = exports.ErrorMessage = exports.ReturnToImportFormDialog = exports.App = exports.Logomark = exports.LogoFull = void 0;
21
+ __exportStar(require("./theme"), exports);
22
+ var Logo_1 = require("./Logo");
23
+ Object.defineProperty(exports, "LogoFull", { enumerable: true, get: function () { return Logo_1.LogoFull; } });
24
+ Object.defineProperty(exports, "Logomark", { enumerable: true, get: function () { return Logo_1.Logomark; } });
25
+ var App_1 = require("./App");
26
+ Object.defineProperty(exports, "App", { enumerable: true, get: function () { return __importDefault(App_1).default; } });
27
+ var ReturnToImportFormDialog_1 = require("./ReturnToImportFormDialog");
28
+ Object.defineProperty(exports, "ReturnToImportFormDialog", { enumerable: true, get: function () { return __importDefault(ReturnToImportFormDialog_1).default; } });
29
+ var ErrorMessage_1 = require("./ErrorMessage");
30
+ Object.defineProperty(exports, "ErrorMessage", { enumerable: true, get: function () { return __importDefault(ErrorMessage_1).default; } });
31
+ var AssemblySelector_1 = require("./AssemblySelector");
32
+ Object.defineProperty(exports, "AssemblySelector", { enumerable: true, get: function () { return __importDefault(AssemblySelector_1).default; } });
33
+ var FileSelector_1 = require("./FileSelector");
34
+ Object.defineProperty(exports, "FileSelector", { enumerable: true, get: function () { return __importDefault(FileSelector_1).default; } });
35
+ var PrerenderedCanvas_1 = require("./PrerenderedCanvas");
36
+ Object.defineProperty(exports, "PrerenderedCanvas", { enumerable: true, get: function () { return __importDefault(PrerenderedCanvas_1).default; } });
37
+ var ResizeHandle_1 = require("./ResizeHandle");
38
+ Object.defineProperty(exports, "ResizeHandle", { enumerable: true, get: function () { return __importDefault(ResizeHandle_1).default; } });
39
+ var EditableTypography_1 = require("./EditableTypography");
40
+ Object.defineProperty(exports, "EditableTypography", { enumerable: true, get: function () { return __importDefault(EditableTypography_1).default; } });
41
+ var FactoryResetDialog_1 = require("./FactoryResetDialog");
42
+ Object.defineProperty(exports, "FactoryResetDialog", { enumerable: true, get: function () { return __importDefault(FactoryResetDialog_1).default; } });
43
+ var Tooltip_1 = require("./Tooltip");
44
+ Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_1).default; } });
45
+ var FatalErrorDialog_1 = require("./FatalErrorDialog");
46
+ Object.defineProperty(exports, "FatalErrorDialog", { enumerable: true, get: function () { return __importDefault(FatalErrorDialog_1).default; } });
47
+ var Menu_1 = require("./Menu");
48
+ Object.defineProperty(exports, "Menu", { enumerable: true, get: function () { return __importDefault(Menu_1).default; } });
49
+ var CascadingMenu_1 = require("./CascadingMenu");
50
+ Object.defineProperty(exports, "CascadingMenu", { enumerable: true, get: function () { return __importDefault(CascadingMenu_1).default; } });
51
+ var SanitizedHTML_1 = require("./SanitizedHTML");
52
+ Object.defineProperty(exports, "SanitizedHTML", { enumerable: true, get: function () { return __importDefault(SanitizedHTML_1).default; } });
53
+ __exportStar(require("./Menu"), exports);