@jbrowse/core 1.5.8 → 1.5.9

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Files changed (125) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.js +6 -6
  2. package/BaseFeatureWidget/SequenceFeatureDetails.js +11 -11
  3. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +1 -1
  4. package/BaseFeatureWidget/index.test.js +1 -1
  5. package/BaseFeatureWidget/util.js +3 -3
  6. package/CorePlugin.js +7 -7
  7. package/Plugin.js +3 -3
  8. package/PluginLoader.js +20 -20
  9. package/PluginManager.js +6 -6
  10. package/ReExports/index.js +1 -1
  11. package/ReExports/material-ui-colors.js +1 -1
  12. package/ReExports/modules.js +2 -2
  13. package/TextSearch/BaseResults.js +5 -5
  14. package/TextSearch/BaseResults.test.js +1 -1
  15. package/TextSearch/TextSearchManager.js +8 -8
  16. package/assemblyManager/assembly.js +23 -23
  17. package/assemblyManager/assemblyManager.js +11 -11
  18. package/assemblyManager/index.js +1 -1
  19. package/configuration/configurationSchema.js +5 -5
  20. package/configuration/configurationSlot.js +2 -2
  21. package/configuration/configurationSlot.test.js +1 -1
  22. package/configuration/util.js +3 -3
  23. package/data_adapters/BaseAdapter.js +22 -22
  24. package/data_adapters/BaseAdapter.test.js +15 -15
  25. package/data_adapters/CytobandAdapter.js +10 -10
  26. package/data_adapters/dataAdapterCache.js +6 -6
  27. package/package.json +2 -2
  28. package/pluggableElementTypes/AdapterType.js +9 -9
  29. package/pluggableElementTypes/ConnectionType.js +5 -5
  30. package/pluggableElementTypes/DisplayType.js +5 -5
  31. package/pluggableElementTypes/InternetAccountType.js +5 -5
  32. package/pluggableElementTypes/PluggableElementBase.js +3 -3
  33. package/pluggableElementTypes/RpcMethodType.js +23 -23
  34. package/pluggableElementTypes/RpcMethodType.test.js +11 -11
  35. package/pluggableElementTypes/TextSearchAdapterType.js +5 -5
  36. package/pluggableElementTypes/TrackType.js +5 -5
  37. package/pluggableElementTypes/ViewType.js +5 -5
  38. package/pluggableElementTypes/WidgetType.js +5 -5
  39. package/pluggableElementTypes/index.js +1 -1
  40. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +2 -2
  41. package/pluggableElementTypes/models/BaseDisplayModel.js +2 -2
  42. package/pluggableElementTypes/models/BaseTrackModel.js +3 -3
  43. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  44. package/pluggableElementTypes/models/baseTrackConfig.js +2 -2
  45. package/pluggableElementTypes/models/index.js +1 -1
  46. package/pluggableElementTypes/renderers/BoxRendererType.js +15 -15
  47. package/pluggableElementTypes/renderers/CircularChordRendererType.js +5 -5
  48. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +14 -14
  49. package/pluggableElementTypes/renderers/FeatureRendererType.js +14 -14
  50. package/pluggableElementTypes/renderers/RendererType.js +9 -9
  51. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +3 -3
  52. package/pluggableElementTypes/renderers/ServerSideRendererType.js +15 -15
  53. package/pluggableElementTypes/renderers/index.js +1 -1
  54. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +3 -3
  55. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +1 -1
  56. package/rpc/BaseRpcDriver.js +15 -15
  57. package/rpc/BaseRpcDriver.test.js +24 -24
  58. package/rpc/MainThreadRpcDriver.js +11 -11
  59. package/rpc/RpcManager.js +9 -9
  60. package/rpc/WebWorkerRpcDriver.js +12 -12
  61. package/rpc/coreRpcMethods.js +30 -30
  62. package/rpc/remoteAbortSignals.js +2 -2
  63. package/ui/AboutDialog.js +7 -7
  64. package/ui/App.js +3 -3
  65. package/ui/AssemblySelector.js +1 -1
  66. package/ui/Drawer.js +1 -1
  67. package/ui/DrawerWidget.js +3 -3
  68. package/ui/DropDownMenu.js +3 -3
  69. package/ui/EditableTypography.js +5 -5
  70. package/ui/ErrorMessage.js +1 -1
  71. package/ui/FactoryResetDialog.js +1 -1
  72. package/ui/FatalErrorDialog.js +3 -3
  73. package/ui/FatalErrorDialog.test.js +7 -7
  74. package/ui/FileSelector/FileSelector.js +6 -6
  75. package/ui/FileSelector/LocalFileChooser.js +1 -1
  76. package/ui/FileSelector/UrlChooser.js +1 -1
  77. package/ui/FileSelector/index.js +1 -1
  78. package/ui/Icons.js +1 -1
  79. package/ui/Logo.js +1 -1
  80. package/ui/Menu.js +5 -5
  81. package/ui/NewSessionCards.js +4 -4
  82. package/ui/PrerenderedCanvas.js +4 -4
  83. package/ui/ResizeHandle.js +4 -4
  84. package/ui/SanitizedHTML.js +1 -1
  85. package/ui/SanitizedHTML.test.js +1 -1
  86. package/ui/Snackbar.js +3 -3
  87. package/ui/Tooltip.js +3 -3
  88. package/ui/ViewContainer.js +4 -4
  89. package/ui/index.js +2 -2
  90. package/ui/theme.js +2 -2
  91. package/util/Base1DViewModel.js +2 -2
  92. package/util/Base1DViewModel.test.js +1 -1
  93. package/util/QuickLRU.js +12 -12
  94. package/util/aborting.js +10 -10
  95. package/util/analytics.js +7 -7
  96. package/util/blockTypes.js +6 -6
  97. package/util/calculateDynamicBlocks.js +2 -2
  98. package/util/calculateDynamicBlocks.test.js +2 -2
  99. package/util/calculateStaticBlocks.test.js +1 -1
  100. package/util/compositeMap.js +13 -13
  101. package/util/idMaker.js +2 -2
  102. package/util/index.js +19 -19
  103. package/util/index.test.js +3 -3
  104. package/util/io/RemoteFileWithRangeCache.js +16 -16
  105. package/util/io/index.js +5 -5
  106. package/util/jexl.js +1 -1
  107. package/util/jexlStrings.js +1 -1
  108. package/util/jexlStrings.test.js +1 -1
  109. package/util/layouts/GranularRectLayout.js +5 -5
  110. package/util/layouts/GranularRectLayout.test.js +2 -2
  111. package/util/layouts/MultiLayout.js +5 -5
  112. package/util/layouts/PrecomputedLayout.js +4 -4
  113. package/util/layouts/PrecomputedMultiLayout.js +6 -6
  114. package/util/layouts/SceneGraph.js +4 -4
  115. package/util/layouts/index.js +1 -1
  116. package/util/offscreenCanvasPonyfill.js +10 -10
  117. package/util/offscreenCanvasUtils.js +5 -5
  118. package/util/range.test.js +2 -2
  119. package/util/simpleFeature.js +5 -5
  120. package/util/simpleFeature.test.js +1 -1
  121. package/util/stats.js +6 -6
  122. package/util/stats.test.js +5 -5
  123. package/util/types/index.js +8 -8
  124. package/util/types/mst.js +3 -3
  125. package/util/when.js +5 -5
package/util/io/index.js CHANGED
@@ -1,6 +1,6 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
@@ -13,9 +13,9 @@ Object.defineProperty(exports, "RemoteFileWithRangeCache", {
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  });
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  exports.openLocation = openLocation;
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- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
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+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
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+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
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  var _genericFilehandle = require("generic-filehandle");
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@@ -41,9 +41,9 @@ function openLocation(location, pluginManager) {
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  }
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  function _checkAuthNeededFetch() {
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- _checkAuthNeededFetch = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(url, opts) {
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+ _checkAuthNeededFetch = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(url, opts) {
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  var response, authHeaders;
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- return _index["default"].wrap(function _callee$(_context) {
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+ return _regenerator["default"].wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
package/util/jexl.js CHANGED
@@ -1,6 +1,6 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  value: true
package/util/jexlStrings.js CHANGED
@@ -1,6 +1,6 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
package/util/jexlStrings.test.js CHANGED
@@ -1,6 +1,6 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  var _jexlStrings = require("./jexlStrings");
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package/util/layouts/GranularRectLayout.js CHANGED
@@ -1,19 +1,19 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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  exports["default"] = void 0;
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- var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
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+ var _createForOfIteratorHelper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createForOfIteratorHelper"));
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- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
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+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
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- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
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- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
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  var _index = require("../index");
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package/util/layouts/GranularRectLayout.test.js CHANGED
@@ -1,8 +1,8 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
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+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
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  var _GranularRectLayout = _interopRequireDefault(require("./GranularRectLayout"));
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package/util/layouts/MultiLayout.js CHANGED
@@ -1,19 +1,19 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  value: true
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  exports["default"] = void 0;
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- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
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+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
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- var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
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+ var _createForOfIteratorHelper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createForOfIteratorHelper"));
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- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
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- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
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  /* eslint-disable @typescript-eslint/no-explicit-any */
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  var MultiLayout = /*#__PURE__*/function () {
package/util/layouts/PrecomputedLayout.js CHANGED
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  value: true
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- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
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+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
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- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
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- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
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package/util/layouts/PrecomputedMultiLayout.js CHANGED
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
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- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
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+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
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- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
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+ var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
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- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
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- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
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package/util/layouts/SceneGraph.js CHANGED
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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+ var _createForOfIteratorHelper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createForOfIteratorHelper"));
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- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
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- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
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package/util/layouts/index.js CHANGED
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package/util/offscreenCanvasPonyfill.js CHANGED
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+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
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- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
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+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
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- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
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- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
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@@ -755,11 +755,11 @@ if (weHave.realOffscreenCanvas) {
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- var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(canvas) {
758
+ var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(canvas) {
759
759
  var dataUri,
760
760
  img,
761
761
  _args = arguments;
762
- return _index["default"].wrap(function _callee$(_context) {
762
+ return _regenerator["default"].wrap(function _callee$(_context) {
763
763
  while (1) {
764
764
  switch (_context.prev = _context.next) {
765
765
  case 0:
package/util/offscreenCanvasUtils.js CHANGED
@@ -1,15 +1,15 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports.renderToAbstractCanvas = renderToAbstractCanvas;
9
9
 
10
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
10
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
12
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
12
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
13
13
 
14
14
  var _react = _interopRequireDefault(require("react"));
15
15
 
@@ -22,10 +22,10 @@ function renderToAbstractCanvas(_x, _x2, _x3, _x4) {
22
22
  }
23
23
 
24
24
  function _renderToAbstractCanvas() {
25
- _renderToAbstractCanvas = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(width, height, opts, cb) {
25
+ _renderToAbstractCanvas = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(width, height, opts, cb) {
26
26
  var exportSVG, _opts$highResolutionS, highResolutionScaling, fakeCanvas, fakeCtx, scale, _canvas, _ctx, canvas, ctx;
27
27
 
28
- return _index["default"].wrap(function _callee$(_context) {
28
+ return _regenerator["default"].wrap(function _callee$(_context) {
29
29
  while (1) {
30
30
  switch (_context.prev = _context.next) {
31
31
  case 0:
package/util/range.test.js CHANGED
@@ -1,8 +1,8 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
5
+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
6
6
 
7
7
  var _range = require("./range");
8
8
 
package/util/simpleFeature.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -8,13 +8,13 @@ Object.defineProperty(exports, "__esModule", {
8
8
  exports["default"] = void 0;
9
9
  exports.isFeature = isFeature;
10
10
 
11
- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
11
+ var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
12
12
 
13
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
13
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
14
14
 
15
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
15
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
16
16
 
17
- var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
17
+ var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/typeof"));
18
18
 
19
19
  /**
20
20
  * Abstract feature object
package/util/simpleFeature.test.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  var _simpleFeature = _interopRequireDefault(require("./simpleFeature"));
6
6
 
package/util/stats.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -11,11 +11,11 @@ exports.calcStdFromSums = calcStdFromSums;
11
11
  exports.rectifyStats = rectifyStats;
12
12
  exports.scoresToStats = scoresToStats;
13
13
 
14
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
14
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
15
15
 
16
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
16
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
17
17
 
18
- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
18
+ var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
19
19
 
20
20
  var _operators = require("rxjs/operators");
21
21
 
@@ -117,10 +117,10 @@ function scoresToStats(_x, _x2) {
117
117
  }
118
118
 
119
119
  function _scoresToStats() {
120
- _scoresToStats = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(region, features) {
120
+ _scoresToStats = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(region, features) {
121
121
  var start, end, _yield$features$pipe$, scoreMin, scoreMax, scoreSum, scoreSumSquares, featureCount;
122
122
 
123
- return _index["default"].wrap(function _callee$(_context) {
123
+ return _regenerator["default"].wrap(function _callee$(_context) {
124
124
  while (1) {
125
125
  switch (_context.prev = _context.next) {
126
126
  case 0:
package/util/stats.test.js CHANGED
@@ -1,10 +1,10 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
5
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
6
6
 
7
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
7
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
8
8
 
9
9
  var _simpleFeature = _interopRequireDefault(require("@jbrowse/core/util/simpleFeature"));
10
10
 
@@ -45,9 +45,9 @@ test('test rectify', function () {
45
45
  scoreSumSquares: 14
46
46
  }).scoreStdDev).toEqual(1); // calculated from a webapp about sample standard deviations
47
47
  });
48
- test('scores to stats', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
48
+ test('scores to stats', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
49
49
  var ret;
50
- return _index["default"].wrap(function _callee$(_context) {
50
+ return _regenerator["default"].wrap(function _callee$(_context) {
51
51
  while (1) {
52
52
  switch (_context.prev = _context.next) {
53
53
  case 0:
package/util/types/index.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -43,19 +43,19 @@ exports.isUriLocation = isUriLocation;
43
43
  exports.isViewContainer = isViewContainer;
44
44
  exports.isViewModel = isViewModel;
45
45
 
46
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
46
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
47
47
 
48
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
48
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
49
49
 
50
- var _assertThisInitialized2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/assertThisInitialized.js"));
50
+ var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/assertThisInitialized"));
51
51
 
52
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
52
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
53
53
 
54
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
54
+ var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
55
55
 
56
- var _wrapNativeSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/wrapNativeSuper.js"));
56
+ var _wrapNativeSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/wrapNativeSuper"));
57
57
 
58
- var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
58
+ var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/typeof"));
59
59
 
60
60
  var _mobxStateTree = require("mobx-state-tree");
61
61
 
package/util/types/mst.js CHANGED
@@ -1,15 +1,15 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports.UriLocationRaw = exports.UriLocation = exports.Region = exports.PropTypes = exports.NoAssemblyRegion = exports.LocalPathLocation = exports.FileLocation = exports.ElementId = exports.BlobLocation = void 0;
9
9
 
10
- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
10
+ var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
11
11
 
12
- var _objectWithoutProperties2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectWithoutProperties.js"));
12
+ var _objectWithoutProperties2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectWithoutProperties"));
13
13
 
14
14
  var _shortid = _interopRequireDefault(require("shortid"));
15
15
 
package/util/when.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -8,9 +8,9 @@ Object.defineProperty(exports, "__esModule", {
8
8
  exports.when = when;
9
9
  exports.whenPresent = whenPresent;
10
10
 
11
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
11
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
12
12
 
13
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
13
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
14
14
 
15
15
  var _mobx = require("mobx");
16
16
 
@@ -87,10 +87,10 @@ function whenPresent(_x) {
87
87
  }
88
88
 
89
89
  function _whenPresent() {
90
- _whenPresent = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(getter) {
90
+ _whenPresent = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(getter) {
91
91
  var opts,
92
92
  _args = arguments;
93
- return _index["default"].wrap(function _callee$(_context) {
93
+ return _regenerator["default"].wrap(function _callee$(_context) {
94
94
  while (1) {
95
95
  switch (_context.prev = _context.next) {
96
96
  case 0: