@jbrowse/core 1.5.8 → 1.5.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (125) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.js +6 -6
  2. package/BaseFeatureWidget/SequenceFeatureDetails.js +11 -11
  3. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +1 -1
  4. package/BaseFeatureWidget/index.test.js +1 -1
  5. package/BaseFeatureWidget/util.js +3 -3
  6. package/CorePlugin.js +7 -7
  7. package/Plugin.js +3 -3
  8. package/PluginLoader.js +20 -20
  9. package/PluginManager.js +6 -6
  10. package/ReExports/index.js +1 -1
  11. package/ReExports/material-ui-colors.js +1 -1
  12. package/ReExports/modules.js +2 -2
  13. package/TextSearch/BaseResults.js +5 -5
  14. package/TextSearch/BaseResults.test.js +1 -1
  15. package/TextSearch/TextSearchManager.js +8 -8
  16. package/assemblyManager/assembly.js +23 -23
  17. package/assemblyManager/assemblyManager.js +11 -11
  18. package/assemblyManager/index.js +1 -1
  19. package/configuration/configurationSchema.js +5 -5
  20. package/configuration/configurationSlot.js +2 -2
  21. package/configuration/configurationSlot.test.js +1 -1
  22. package/configuration/util.js +3 -3
  23. package/data_adapters/BaseAdapter.js +22 -22
  24. package/data_adapters/BaseAdapter.test.js +15 -15
  25. package/data_adapters/CytobandAdapter.js +10 -10
  26. package/data_adapters/dataAdapterCache.js +6 -6
  27. package/package.json +2 -2
  28. package/pluggableElementTypes/AdapterType.js +9 -9
  29. package/pluggableElementTypes/ConnectionType.js +5 -5
  30. package/pluggableElementTypes/DisplayType.js +5 -5
  31. package/pluggableElementTypes/InternetAccountType.js +5 -5
  32. package/pluggableElementTypes/PluggableElementBase.js +3 -3
  33. package/pluggableElementTypes/RpcMethodType.js +23 -23
  34. package/pluggableElementTypes/RpcMethodType.test.js +11 -11
  35. package/pluggableElementTypes/TextSearchAdapterType.js +5 -5
  36. package/pluggableElementTypes/TrackType.js +5 -5
  37. package/pluggableElementTypes/ViewType.js +5 -5
  38. package/pluggableElementTypes/WidgetType.js +5 -5
  39. package/pluggableElementTypes/index.js +1 -1
  40. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +2 -2
  41. package/pluggableElementTypes/models/BaseDisplayModel.js +2 -2
  42. package/pluggableElementTypes/models/BaseTrackModel.js +3 -3
  43. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  44. package/pluggableElementTypes/models/baseTrackConfig.js +2 -2
  45. package/pluggableElementTypes/models/index.js +1 -1
  46. package/pluggableElementTypes/renderers/BoxRendererType.js +15 -15
  47. package/pluggableElementTypes/renderers/CircularChordRendererType.js +5 -5
  48. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +14 -14
  49. package/pluggableElementTypes/renderers/FeatureRendererType.js +14 -14
  50. package/pluggableElementTypes/renderers/RendererType.js +9 -9
  51. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +3 -3
  52. package/pluggableElementTypes/renderers/ServerSideRendererType.js +15 -15
  53. package/pluggableElementTypes/renderers/index.js +1 -1
  54. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +3 -3
  55. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +1 -1
  56. package/rpc/BaseRpcDriver.js +15 -15
  57. package/rpc/BaseRpcDriver.test.js +24 -24
  58. package/rpc/MainThreadRpcDriver.js +11 -11
  59. package/rpc/RpcManager.js +9 -9
  60. package/rpc/WebWorkerRpcDriver.js +12 -12
  61. package/rpc/coreRpcMethods.js +30 -30
  62. package/rpc/remoteAbortSignals.js +2 -2
  63. package/ui/AboutDialog.js +7 -7
  64. package/ui/App.js +3 -3
  65. package/ui/AssemblySelector.js +1 -1
  66. package/ui/Drawer.js +1 -1
  67. package/ui/DrawerWidget.js +3 -3
  68. package/ui/DropDownMenu.js +3 -3
  69. package/ui/EditableTypography.js +5 -5
  70. package/ui/ErrorMessage.js +1 -1
  71. package/ui/FactoryResetDialog.js +1 -1
  72. package/ui/FatalErrorDialog.js +3 -3
  73. package/ui/FatalErrorDialog.test.js +7 -7
  74. package/ui/FileSelector/FileSelector.js +6 -6
  75. package/ui/FileSelector/LocalFileChooser.js +1 -1
  76. package/ui/FileSelector/UrlChooser.js +1 -1
  77. package/ui/FileSelector/index.js +1 -1
  78. package/ui/Icons.js +1 -1
  79. package/ui/Logo.js +1 -1
  80. package/ui/Menu.js +5 -5
  81. package/ui/NewSessionCards.js +4 -4
  82. package/ui/PrerenderedCanvas.js +4 -4
  83. package/ui/ResizeHandle.js +4 -4
  84. package/ui/SanitizedHTML.js +1 -1
  85. package/ui/SanitizedHTML.test.js +1 -1
  86. package/ui/Snackbar.js +3 -3
  87. package/ui/Tooltip.js +3 -3
  88. package/ui/ViewContainer.js +4 -4
  89. package/ui/index.js +2 -2
  90. package/ui/theme.js +2 -2
  91. package/util/Base1DViewModel.js +2 -2
  92. package/util/Base1DViewModel.test.js +1 -1
  93. package/util/QuickLRU.js +12 -12
  94. package/util/aborting.js +10 -10
  95. package/util/analytics.js +7 -7
  96. package/util/blockTypes.js +6 -6
  97. package/util/calculateDynamicBlocks.js +2 -2
  98. package/util/calculateDynamicBlocks.test.js +2 -2
  99. package/util/calculateStaticBlocks.test.js +1 -1
  100. package/util/compositeMap.js +13 -13
  101. package/util/idMaker.js +2 -2
  102. package/util/index.js +19 -19
  103. package/util/index.test.js +3 -3
  104. package/util/io/RemoteFileWithRangeCache.js +16 -16
  105. package/util/io/index.js +5 -5
  106. package/util/jexl.js +1 -1
  107. package/util/jexlStrings.js +1 -1
  108. package/util/jexlStrings.test.js +1 -1
  109. package/util/layouts/GranularRectLayout.js +5 -5
  110. package/util/layouts/GranularRectLayout.test.js +2 -2
  111. package/util/layouts/MultiLayout.js +5 -5
  112. package/util/layouts/PrecomputedLayout.js +4 -4
  113. package/util/layouts/PrecomputedMultiLayout.js +6 -6
  114. package/util/layouts/SceneGraph.js +4 -4
  115. package/util/layouts/index.js +1 -1
  116. package/util/offscreenCanvasPonyfill.js +10 -10
  117. package/util/offscreenCanvasUtils.js +5 -5
  118. package/util/range.test.js +2 -2
  119. package/util/simpleFeature.js +5 -5
  120. package/util/simpleFeature.test.js +1 -1
  121. package/util/stats.js +6 -6
  122. package/util/stats.test.js +5 -5
  123. package/util/types/index.js +8 -8
  124. package/util/types/mst.js +3 -3
  125. package/util/when.js +5 -5
package/configuration/configurationSchema.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -8,13 +8,13 @@ Object.defineProperty(exports, "__esModule", {
8
8
  exports.ConfigurationReference = ConfigurationReference;
9
9
  exports.ConfigurationSchema = ConfigurationSchema;
10
10
 
11
- var _defineProperty2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/defineProperty.js"));
11
+ var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/defineProperty"));
12
12
 
13
- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
13
+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
14
14
 
15
- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
15
+ var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
16
16
 
17
- var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
17
+ var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/typeof"));
18
18
 
19
19
  var _mobxStateTree = require("mobx-state-tree");
20
20
 
package/configuration/configurationSlot.js CHANGED
@@ -1,13 +1,13 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports["default"] = ConfigSlot;
9
9
 
10
- var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
10
+ var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/typeof"));
11
11
 
12
12
  var _mobxStateTree = require("mobx-state-tree");
13
13
 
package/configuration/configurationSlot.test.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  var _configurationSlot = _interopRequireDefault(require("./configurationSlot"));
6
6
 
package/configuration/util.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -13,9 +13,9 @@ exports.isConfigurationSchemaType = isConfigurationSchemaType;
13
13
  exports.isConfigurationSlotType = isConfigurationSlotType;
14
14
  exports.readConfObject = readConfObject;
15
15
 
16
- var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
16
+ var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/typeof"));
17
17
 
18
- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
18
+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
19
19
 
20
20
  var _mobxStateTree = require("mobx-state-tree");
21
21
 
package/data_adapters/BaseAdapter.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -12,19 +12,19 @@ exports.isRegionsAdapter = isRegionsAdapter;
12
12
  exports.isSequenceAdapter = isSequenceAdapter;
13
13
  exports.isTextSearchAdapter = isTextSearchAdapter;
14
14
 
15
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
15
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
16
16
 
17
- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
17
+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
18
18
 
19
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
19
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
20
20
 
21
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
21
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
22
22
 
23
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
23
+ var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
24
24
 
25
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
25
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
26
26
 
27
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
27
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
28
28
 
29
29
  var _rxjs = require("rxjs");
30
30
 
@@ -108,8 +108,8 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
108
108
  * object
109
109
  */
110
110
  function () {
111
- var _getHeader = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(_opts) {
112
- return _index["default"].wrap(function _callee$(_context) {
111
+ var _getHeader = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(_opts) {
112
+ return _regenerator["default"].wrap(function _callee$(_context) {
113
113
  while (1) {
114
114
  switch (_context.prev = _context.next) {
115
115
  case 0:
@@ -137,8 +137,8 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
137
137
  }, {
138
138
  key: "getMetadata",
139
139
  value: function () {
140
- var _getMetadata = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2(_opts) {
141
- return _index["default"].wrap(function _callee2$(_context2) {
140
+ var _getMetadata = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(_opts) {
141
+ return _regenerator["default"].wrap(function _callee2$(_context2) {
142
142
  while (1) {
143
143
  switch (_context2.prev = _context2.next) {
144
144
  case 0:
@@ -170,9 +170,9 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
170
170
 
171
171
  var opts = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {};
172
172
  return (0, _rxjs2.ObservableCreate)( /*#__PURE__*/function () {
173
- var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3(observer) {
173
+ var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3(observer) {
174
174
  var hasData;
175
- return _index["default"].wrap(function _callee3$(_context3) {
175
+ return _regenerator["default"].wrap(function _callee3$(_context3) {
176
176
  while (1) {
177
177
  switch (_context3.prev = _context3.next) {
178
178
  case 0:
@@ -228,9 +228,9 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
228
228
 
229
229
  var obs = _rxjs.merge.apply(void 0, (0, _toConsumableArray2["default"])(regions.map(function (region) {
230
230
  return (0, _rxjs2.ObservableCreate)( /*#__PURE__*/function () {
231
- var _ref2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee4(observer) {
231
+ var _ref2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4(observer) {
232
232
  var hasData;
233
- return _index["default"].wrap(function _callee4$(_context4) {
233
+ return _regenerator["default"].wrap(function _callee4$(_context4) {
234
234
  while (1) {
235
235
  switch (_context4.prev = _context4.next) {
236
236
  case 0:
@@ -277,11 +277,11 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
277
277
  }, {
278
278
  key: "hasDataForRefName",
279
279
  value: function () {
280
- var _hasDataForRefName = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee5(refName) {
280
+ var _hasDataForRefName = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee5(refName) {
281
281
  var opts,
282
282
  refNames,
283
283
  _args5 = arguments;
284
- return _index["default"].wrap(function _callee5$(_context5) {
284
+ return _regenerator["default"].wrap(function _callee5$(_context5) {
285
285
  while (1) {
286
286
  switch (_context5.prev = _context5.next) {
287
287
  case 0:
@@ -310,9 +310,9 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
310
310
  }, {
311
311
  key: "getRegionStats",
312
312
  value: function () {
313
- var _getRegionStats = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee6(region, opts) {
313
+ var _getRegionStats = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee6(region, opts) {
314
314
  var feats;
315
- return _index["default"].wrap(function _callee6$(_context6) {
315
+ return _regenerator["default"].wrap(function _callee6$(_context6) {
316
316
  while (1) {
317
317
  switch (_context6.prev = _context6.next) {
318
318
  case 0:
@@ -336,7 +336,7 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
336
336
  }, {
337
337
  key: "getMultiRegionStats",
338
338
  value: function () {
339
- var _getMultiRegionStats = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee7() {
339
+ var _getMultiRegionStats = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee7() {
340
340
  var _this3 = this;
341
341
 
342
342
  var regions,
@@ -349,7 +349,7 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
349
349
  featureCount,
350
350
  basesCovered,
351
351
  _args7 = arguments;
352
- return _index["default"].wrap(function _callee7$(_context7) {
352
+ return _regenerator["default"].wrap(function _callee7$(_context7) {
353
353
  while (1) {
354
354
  switch (_context7.prev = _context7.next) {
355
355
  case 0:
package/data_adapters/BaseAdapter.test.js CHANGED
@@ -1,18 +1,18 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
5
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
6
6
 
7
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
7
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
8
8
 
9
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
9
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
10
10
 
11
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
11
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
12
12
 
13
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
13
+ var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
14
14
 
15
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
15
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
16
16
 
17
17
  var _operators = require("rxjs/operators");
18
18
 
@@ -25,9 +25,9 @@ var _simpleFeature = _interopRequireDefault(require("../util/simpleFeature"));
25
25
  var _configurationSchema = require("../configuration/configurationSchema");
26
26
 
27
27
  describe('base data adapter', function () {
28
- it('properly propagates errors in feature fetching', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2() {
28
+ it('properly propagates errors in feature fetching', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
29
29
  var Adapter, adapter, features, featuresArray;
30
- return _index["default"].wrap(function _callee2$(_context2) {
30
+ return _regenerator["default"].wrap(function _callee2$(_context2) {
31
31
  while (1) {
32
32
  switch (_context2.prev = _context2.next) {
33
33
  case 0:
@@ -44,8 +44,8 @@ describe('base data adapter', function () {
44
44
  (0, _createClass2["default"])(Adapter, [{
45
45
  key: "getRefNames",
46
46
  value: function () {
47
- var _getRefNames = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
48
- return _index["default"].wrap(function _callee$(_context) {
47
+ var _getRefNames = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
48
+ return _regenerator["default"].wrap(function _callee$(_context) {
49
49
  while (1) {
50
50
  switch (_context.prev = _context.next) {
51
51
  case 0:
@@ -96,9 +96,9 @@ describe('base data adapter', function () {
96
96
  }
97
97
  }, _callee2);
98
98
  })));
99
- it('retrieves features', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee4() {
99
+ it('retrieves features', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4() {
100
100
  var Adapter, adapter, features, featuresArray, features2, featuresArray2;
101
- return _index["default"].wrap(function _callee4$(_context4) {
101
+ return _regenerator["default"].wrap(function _callee4$(_context4) {
102
102
  while (1) {
103
103
  switch (_context4.prev = _context4.next) {
104
104
  case 0:
@@ -115,8 +115,8 @@ describe('base data adapter', function () {
115
115
  (0, _createClass2["default"])(Adapter, [{
116
116
  key: "getRefNames",
117
117
  value: function () {
118
- var _getRefNames2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3() {
119
- return _index["default"].wrap(function _callee3$(_context3) {
118
+ var _getRefNames2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3() {
119
+ return _regenerator["default"].wrap(function _callee3$(_context3) {
120
120
  while (1) {
121
121
  switch (_context3.prev = _context3.next) {
122
122
  case 0:
package/data_adapters/CytobandAdapter.js CHANGED
@@ -1,25 +1,25 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports.configSchema = exports.DataAdapter = void 0;
9
9
 
10
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
10
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
12
- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
12
+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
13
13
 
14
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
14
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
15
15
 
16
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
16
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
17
17
 
18
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
18
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
19
19
 
20
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
20
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
21
21
 
22
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
22
+ var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
23
23
 
24
24
  var _simpleFeature = _interopRequireDefault(require("@jbrowse/core/util/simpleFeature"));
25
25
 
@@ -54,9 +54,9 @@ var CytobandAdapter = /*#__PURE__*/function (_BaseAdapter) {
54
54
  (0, _createClass2["default"])(CytobandAdapter, [{
55
55
  key: "getData",
56
56
  value: function () {
57
- var _getData = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
57
+ var _getData = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
58
58
  var loc, data;
59
- return _index["default"].wrap(function _callee$(_context) {
59
+ return _regenerator["default"].wrap(function _callee$(_context) {
60
60
  while (1) {
61
61
  switch (_context.prev = _context.next) {
62
62
  case 0:
package/data_adapters/dataAdapterCache.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -9,11 +9,11 @@ exports.clearAdapterCache = clearAdapterCache;
9
9
  exports.freeAdapterResources = freeAdapterResources;
10
10
  exports.getAdapter = getAdapter;
11
11
 
12
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
12
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
13
13
 
14
- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
14
+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
15
15
 
16
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
16
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
17
17
 
18
18
  var _idMaker = _interopRequireDefault(require("../util/idMaker"));
19
19
 
@@ -43,9 +43,9 @@ function getAdapter(_x, _x2, _x3) {
43
43
 
44
44
 
45
45
  function _getAdapter() {
46
- _getAdapter = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(pluginManager, sessionId, adapterConfigSnapshot) {
46
+ _getAdapter = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(pluginManager, sessionId, adapterConfigSnapshot) {
47
47
  var cacheKey, adapterType, dataAdapterType, adapterConfig, getSubAdapter, AdapterClass, getAdapterClass, CLASS, dataAdapter, cacheEntry;
48
- return _index["default"].wrap(function _callee$(_context) {
48
+ return _regenerator["default"].wrap(function _callee$(_context) {
49
49
  while (1) {
50
50
  switch (_context.prev = _context.next) {
51
51
  case 0:
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/core",
3
- "version": "1.5.8",
3
+ "version": "1.5.9",
4
4
  "description": "JBrowse 2 core libraries used by plugins",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -77,5 +77,5 @@
77
77
  "access": "public",
78
78
  "directory": "dist"
79
79
  },
80
- "gitHead": "f16afc382629a4a830f9040410a9ff1a3a328918"
80
+ "gitHead": "ed95a546c760209df8d59ff499dc81a6438d0f3e"
81
81
  }
package/pluggableElementTypes/AdapterType.js CHANGED
@@ -1,23 +1,23 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports["default"] = void 0;
9
9
 
10
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
10
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
12
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
12
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
13
13
 
14
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
14
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
15
15
 
16
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
16
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
17
17
 
18
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
18
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
19
19
 
20
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
20
+ var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
21
21
 
22
22
  var _PluggableElementBase2 = _interopRequireDefault(require("./PluggableElementBase"));
23
23
 
@@ -40,8 +40,8 @@ var AdapterType = /*#__PURE__*/function (_PluggableElementBase) {
40
40
 
41
41
  if ('AdapterClass' in stuff) {
42
42
  _this.AdapterClass = stuff.AdapterClass;
43
- _this.getAdapterClass = /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
44
- return _index["default"].wrap(function _callee$(_context) {
43
+ _this.getAdapterClass = /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
44
+ return _regenerator["default"].wrap(function _callee$(_context) {
45
45
  while (1) {
46
46
  switch (_context.prev = _context.next) {
47
47
  case 0:
package/pluggableElementTypes/ConnectionType.js CHANGED
@@ -1,19 +1,19 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports["default"] = void 0;
9
9
 
10
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
10
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
11
11
 
12
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
12
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
13
13
 
14
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
14
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
15
15
 
16
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
16
+ var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
17
17
 
18
18
  var _PluggableElementBase2 = _interopRequireDefault(require("./PluggableElementBase"));
19
19
 
package/pluggableElementTypes/DisplayType.js CHANGED
@@ -1,19 +1,19 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports["default"] = void 0;
9
9
 
10
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
10
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
11
11
 
12
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
12
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
13
13
 
14
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
14
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
15
15
 
16
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
16
+ var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
17
17
 
18
18
  var _PluggableElementBase2 = _interopRequireDefault(require("./PluggableElementBase"));
19
19
 
package/pluggableElementTypes/InternetAccountType.js CHANGED
@@ -1,19 +1,19 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports["default"] = void 0;
9
9
 
10
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
10
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
11
11
 
12
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
12
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
13
13
 
14
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
14
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
15
15
 
16
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
16
+ var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
17
17
 
18
18
  var _PluggableElementBase2 = _interopRequireDefault(require("./PluggableElementBase"));
19
19
 
package/pluggableElementTypes/PluggableElementBase.js CHANGED
@@ -1,15 +1,15 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports["default"] = void 0;
9
9
 
10
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
10
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
11
11
 
12
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
12
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
13
13
 
14
14
  var PluggableElementBase = /*#__PURE__*/(0, _createClass2["default"])(function PluggableElementBase(args) {
15
15
  (0, _classCallCheck2["default"])(this, PluggableElementBase);