@jbrowse/core 1.5.8 → 1.5.9

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Files changed (125) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.js +6 -6
  2. package/BaseFeatureWidget/SequenceFeatureDetails.js +11 -11
  3. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +1 -1
  4. package/BaseFeatureWidget/index.test.js +1 -1
  5. package/BaseFeatureWidget/util.js +3 -3
  6. package/CorePlugin.js +7 -7
  7. package/Plugin.js +3 -3
  8. package/PluginLoader.js +20 -20
  9. package/PluginManager.js +6 -6
  10. package/ReExports/index.js +1 -1
  11. package/ReExports/material-ui-colors.js +1 -1
  12. package/ReExports/modules.js +2 -2
  13. package/TextSearch/BaseResults.js +5 -5
  14. package/TextSearch/BaseResults.test.js +1 -1
  15. package/TextSearch/TextSearchManager.js +8 -8
  16. package/assemblyManager/assembly.js +23 -23
  17. package/assemblyManager/assemblyManager.js +11 -11
  18. package/assemblyManager/index.js +1 -1
  19. package/configuration/configurationSchema.js +5 -5
  20. package/configuration/configurationSlot.js +2 -2
  21. package/configuration/configurationSlot.test.js +1 -1
  22. package/configuration/util.js +3 -3
  23. package/data_adapters/BaseAdapter.js +22 -22
  24. package/data_adapters/BaseAdapter.test.js +15 -15
  25. package/data_adapters/CytobandAdapter.js +10 -10
  26. package/data_adapters/dataAdapterCache.js +6 -6
  27. package/package.json +2 -2
  28. package/pluggableElementTypes/AdapterType.js +9 -9
  29. package/pluggableElementTypes/ConnectionType.js +5 -5
  30. package/pluggableElementTypes/DisplayType.js +5 -5
  31. package/pluggableElementTypes/InternetAccountType.js +5 -5
  32. package/pluggableElementTypes/PluggableElementBase.js +3 -3
  33. package/pluggableElementTypes/RpcMethodType.js +23 -23
  34. package/pluggableElementTypes/RpcMethodType.test.js +11 -11
  35. package/pluggableElementTypes/TextSearchAdapterType.js +5 -5
  36. package/pluggableElementTypes/TrackType.js +5 -5
  37. package/pluggableElementTypes/ViewType.js +5 -5
  38. package/pluggableElementTypes/WidgetType.js +5 -5
  39. package/pluggableElementTypes/index.js +1 -1
  40. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +2 -2
  41. package/pluggableElementTypes/models/BaseDisplayModel.js +2 -2
  42. package/pluggableElementTypes/models/BaseTrackModel.js +3 -3
  43. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  44. package/pluggableElementTypes/models/baseTrackConfig.js +2 -2
  45. package/pluggableElementTypes/models/index.js +1 -1
  46. package/pluggableElementTypes/renderers/BoxRendererType.js +15 -15
  47. package/pluggableElementTypes/renderers/CircularChordRendererType.js +5 -5
  48. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +14 -14
  49. package/pluggableElementTypes/renderers/FeatureRendererType.js +14 -14
  50. package/pluggableElementTypes/renderers/RendererType.js +9 -9
  51. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +3 -3
  52. package/pluggableElementTypes/renderers/ServerSideRendererType.js +15 -15
  53. package/pluggableElementTypes/renderers/index.js +1 -1
  54. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +3 -3
  55. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +1 -1
  56. package/rpc/BaseRpcDriver.js +15 -15
  57. package/rpc/BaseRpcDriver.test.js +24 -24
  58. package/rpc/MainThreadRpcDriver.js +11 -11
  59. package/rpc/RpcManager.js +9 -9
  60. package/rpc/WebWorkerRpcDriver.js +12 -12
  61. package/rpc/coreRpcMethods.js +30 -30
  62. package/rpc/remoteAbortSignals.js +2 -2
  63. package/ui/AboutDialog.js +7 -7
  64. package/ui/App.js +3 -3
  65. package/ui/AssemblySelector.js +1 -1
  66. package/ui/Drawer.js +1 -1
  67. package/ui/DrawerWidget.js +3 -3
  68. package/ui/DropDownMenu.js +3 -3
  69. package/ui/EditableTypography.js +5 -5
  70. package/ui/ErrorMessage.js +1 -1
  71. package/ui/FactoryResetDialog.js +1 -1
  72. package/ui/FatalErrorDialog.js +3 -3
  73. package/ui/FatalErrorDialog.test.js +7 -7
  74. package/ui/FileSelector/FileSelector.js +6 -6
  75. package/ui/FileSelector/LocalFileChooser.js +1 -1
  76. package/ui/FileSelector/UrlChooser.js +1 -1
  77. package/ui/FileSelector/index.js +1 -1
  78. package/ui/Icons.js +1 -1
  79. package/ui/Logo.js +1 -1
  80. package/ui/Menu.js +5 -5
  81. package/ui/NewSessionCards.js +4 -4
  82. package/ui/PrerenderedCanvas.js +4 -4
  83. package/ui/ResizeHandle.js +4 -4
  84. package/ui/SanitizedHTML.js +1 -1
  85. package/ui/SanitizedHTML.test.js +1 -1
  86. package/ui/Snackbar.js +3 -3
  87. package/ui/Tooltip.js +3 -3
  88. package/ui/ViewContainer.js +4 -4
  89. package/ui/index.js +2 -2
  90. package/ui/theme.js +2 -2
  91. package/util/Base1DViewModel.js +2 -2
  92. package/util/Base1DViewModel.test.js +1 -1
  93. package/util/QuickLRU.js +12 -12
  94. package/util/aborting.js +10 -10
  95. package/util/analytics.js +7 -7
  96. package/util/blockTypes.js +6 -6
  97. package/util/calculateDynamicBlocks.js +2 -2
  98. package/util/calculateDynamicBlocks.test.js +2 -2
  99. package/util/calculateStaticBlocks.test.js +1 -1
  100. package/util/compositeMap.js +13 -13
  101. package/util/idMaker.js +2 -2
  102. package/util/index.js +19 -19
  103. package/util/index.test.js +3 -3
  104. package/util/io/RemoteFileWithRangeCache.js +16 -16
  105. package/util/io/index.js +5 -5
  106. package/util/jexl.js +1 -1
  107. package/util/jexlStrings.js +1 -1
  108. package/util/jexlStrings.test.js +1 -1
  109. package/util/layouts/GranularRectLayout.js +5 -5
  110. package/util/layouts/GranularRectLayout.test.js +2 -2
  111. package/util/layouts/MultiLayout.js +5 -5
  112. package/util/layouts/PrecomputedLayout.js +4 -4
  113. package/util/layouts/PrecomputedMultiLayout.js +6 -6
  114. package/util/layouts/SceneGraph.js +4 -4
  115. package/util/layouts/index.js +1 -1
  116. package/util/offscreenCanvasPonyfill.js +10 -10
  117. package/util/offscreenCanvasUtils.js +5 -5
  118. package/util/range.test.js +2 -2
  119. package/util/simpleFeature.js +5 -5
  120. package/util/simpleFeature.test.js +1 -1
  121. package/util/stats.js +6 -6
  122. package/util/stats.test.js +5 -5
  123. package/util/types/index.js +8 -8
  124. package/util/types/mst.js +3 -3
  125. package/util/when.js +5 -5
package/BaseFeatureWidget/BaseFeatureDetail.js CHANGED
@@ -1,8 +1,8 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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- var _interopRequireWildcard = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
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+ var _interopRequireWildcard = require("@babel/runtime/helpers/interopRequireWildcard")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
@@ -11,13 +11,13 @@ exports.BaseAttributes = exports.Attributes = void 0;
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  exports.BaseCard = BaseCard;
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  exports.useStyles = exports["default"] = exports.SimpleValue = exports.FieldName = exports.FeatureDetails = exports.BasicValue = exports.BaseCoreDetails = void 0;
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- var _objectWithoutProperties2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectWithoutProperties.js"));
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+ var _objectWithoutProperties2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectWithoutProperties"));
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- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
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+ var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
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- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
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+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
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- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
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+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
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  var _react = _interopRequireWildcard(require("react"));
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package/BaseFeatureWidget/SequenceFeatureDetails.js CHANGED
@@ -1,8 +1,8 @@
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  "use strict";
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- var _interopRequireWildcard = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
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+ var _interopRequireWildcard = require("@babel/runtime/helpers/interopRequireWildcard")["default"];
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
@@ -10,15 +10,15 @@ Object.defineProperty(exports, "__esModule", {
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  exports.SequencePanel = void 0;
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  exports["default"] = SequenceFeatureDetails;
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- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
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+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
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+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
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- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
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+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
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- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
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+ var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
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- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
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+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
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  var _react = _interopRequireWildcard(require("react"));
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@@ -300,10 +300,10 @@ function SequenceFeatureDetails(_ref6) {
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  }
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  function _fetchSeq() {
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- _fetchSeq = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2(start, end, refName) {
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+ _fetchSeq = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(start, end, refName) {
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  var assembly, sessionId, feats, _ref11, _ref12, feat;
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- return _index["default"].wrap(function _callee2$(_context2) {
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+ return _regenerator["default"].wrap(function _callee2$(_context2) {
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  while (1) {
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  switch (_context2.prev = _context2.next) {
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  case 0:
@@ -358,10 +358,10 @@ function SequenceFeatureDetails(_ref6) {
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  }
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  ;
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- (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
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+ (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
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  var _ref10, start, end, refName, seq, up, down;
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- return _index["default"].wrap(function _callee$(_context) {
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+ return _regenerator["default"].wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
package/BaseFeatureWidget/SequenceFeatureDetails.test.js CHANGED
@@ -1,6 +1,6 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  var _react = _interopRequireDefault(require("react"));
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package/BaseFeatureWidget/index.test.js CHANGED
@@ -1,6 +1,6 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  var _react = _interopRequireDefault(require("react"));
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package/BaseFeatureWidget/util.js CHANGED
@@ -1,6 +1,6 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  value: true
@@ -11,9 +11,9 @@ exports.ellipses = ellipses;
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  exports.revlist = revlist;
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  exports.stitch = stitch;
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- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
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+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
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- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
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+ var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
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  function stitch(subfeats, sequence) {
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  return subfeats.map(function (sub) {
package/CorePlugin.js CHANGED
@@ -1,23 +1,23 @@
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  "use strict";
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- var _interopRequireWildcard3 = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
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+ var _interopRequireWildcard3 = require("@babel/runtime/helpers/interopRequireWildcard")["default"];
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  value: true
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- var _interopRequireWildcard2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/interopRequireWildcard.js"));
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+ var _interopRequireWildcard2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/interopRequireWildcard"));
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- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
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- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
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- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
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+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
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- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
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+ var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
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package/Plugin.js CHANGED
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
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- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
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  /**
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package/PluginLoader.js CHANGED
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  "use strict";
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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@@ -10,19 +10,19 @@ exports.isCJSPluginDefinition = isCJSPluginDefinition;
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  exports.isUMDPluginDefinition = isUMDPluginDefinition;
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+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
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+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
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- var _interopRequireWildcard2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/interopRequireWildcard.js"));
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+ var _interopRequireWildcard2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/interopRequireWildcard"));
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- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
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+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
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- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
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- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
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- var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
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+ var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/typeof"));
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@@ -110,9 +110,9 @@ var PluginLoader = /*#__PURE__*/function () {
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- var _loadCJSPlugin = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(pluginDefinition) {
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+ var _loadCJSPlugin = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(pluginDefinition) {
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@@ -210,9 +210,9 @@ var PluginLoader = /*#__PURE__*/function () {
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  key: "loadESMPlugin",
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- var _loadESMPlugin = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2(pluginDefinition) {
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+ var _loadESMPlugin = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(pluginDefinition) {
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@@ -273,9 +273,9 @@ var PluginLoader = /*#__PURE__*/function () {
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  key: "loadUMDPlugin",
275
275
  value: function () {
276
- var _loadUMDPlugin = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3(pluginDefinition) {
276
+ var _loadUMDPlugin = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3(pluginDefinition) {
277
277
  var umdUrl, parsedUrl, moduleName, umdName, globalObject, plugin;
278
- return _index["default"].wrap(function _callee3$(_context3) {
278
+ return _regenerator["default"].wrap(function _callee3$(_context3) {
279
279
  while (1) {
280
280
  switch (_context3.prev = _context3.next) {
281
281
  case 0:
@@ -337,9 +337,9 @@ var PluginLoader = /*#__PURE__*/function () {
337
337
  }, {
338
338
  key: "loadPlugin",
339
339
  value: function () {
340
- var _loadPlugin = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee4(definition) {
340
+ var _loadPlugin = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4(definition) {
341
341
  var plugin;
342
- return _index["default"].wrap(function _callee4$(_context4) {
342
+ return _regenerator["default"].wrap(function _callee4$(_context4) {
343
343
  while (1) {
344
344
  switch (_context4.prev = _context4.next) {
345
345
  case 0:
@@ -427,16 +427,16 @@ var PluginLoader = /*#__PURE__*/function () {
427
427
  }, {
428
428
  key: "load",
429
429
  value: function () {
430
- var _load = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee6() {
430
+ var _load = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee6() {
431
431
  var _this = this;
432
432
 
433
- return _index["default"].wrap(function _callee6$(_context6) {
433
+ return _regenerator["default"].wrap(function _callee6$(_context6) {
434
434
  while (1) {
435
435
  switch (_context6.prev = _context6.next) {
436
436
  case 0:
437
437
  return _context6.abrupt("return", Promise.all(this.definitions.map( /*#__PURE__*/function () {
438
- var _ref3 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee5(definition) {
439
- return _index["default"].wrap(function _callee5$(_context5) {
438
+ var _ref3 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee5(definition) {
439
+ return _regenerator["default"].wrap(function _callee5$(_context5) {
440
440
  while (1) {
441
441
  switch (_context5.prev = _context5.next) {
442
442
  case 0:
package/PluginManager.js CHANGED
@@ -1,21 +1,21 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports["default"] = void 0;
9
9
 
10
- var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
10
+ var _createForOfIteratorHelper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createForOfIteratorHelper"));
11
11
 
12
- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
12
+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
13
13
 
14
- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
14
+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
15
15
 
16
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
16
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
17
17
 
18
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
18
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
19
19
 
20
20
  var _mobxStateTree = require("mobx-state-tree");
21
21
 
package/ReExports/index.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
package/ReExports/material-ui-colors.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
package/ReExports/modules.js CHANGED
@@ -1,8 +1,8 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireWildcard = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
3
+ var _interopRequireWildcard = require("@babel/runtime/helpers/interopRequireWildcard")["default"];
4
4
 
5
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
5
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
6
6
 
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
package/TextSearch/BaseResults.js CHANGED
@@ -1,19 +1,19 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports["default"] = exports.RefSequenceResult = void 0;
9
9
 
10
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
10
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
11
11
 
12
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
12
+ var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
13
13
 
14
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
14
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
15
15
 
16
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
16
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
17
17
 
18
18
  var BaseResult = /*#__PURE__*/function () {
19
19
  function BaseResult(args) {
package/TextSearch/BaseResults.test.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireWildcard = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
3
+ var _interopRequireWildcard = require("@babel/runtime/helpers/interopRequireWildcard")["default"];
4
4
 
5
5
  var _BaseResults = _interopRequireWildcard(require("./BaseResults"));
6
6
 
package/TextSearch/TextSearchManager.js CHANGED
@@ -1,21 +1,21 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports["default"] = void 0;
9
9
 
10
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
10
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
12
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
12
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
13
13
 
14
- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
14
+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
15
15
 
16
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
16
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
17
17
 
18
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
18
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
19
19
 
20
20
  var _QuickLRU = _interopRequireDefault(require("../util/QuickLRU"));
21
21
 
@@ -95,9 +95,9 @@ var TextSearchManager = /*#__PURE__*/function () {
95
95
  }, {
96
96
  key: "search",
97
97
  value: function () {
98
- var _search = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(args, searchScope, rankFn) {
98
+ var _search = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(args, searchScope, rankFn) {
99
99
  var textSearchAdapters, results;
100
- return _index["default"].wrap(function _callee$(_context) {
100
+ return _regenerator["default"].wrap(function _callee$(_context) {
101
101
  while (1) {
102
102
  switch (_context.prev = _context.next) {
103
103
  case 0:
package/assemblyManager/assembly.js CHANGED
@@ -1,23 +1,23 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports["default"] = assemblyFactory;
9
9
 
10
- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
10
+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
11
11
 
12
- var _objectWithoutProperties2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectWithoutProperties.js"));
12
+ var _objectWithoutProperties2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectWithoutProperties"));
13
13
 
14
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
14
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
15
15
 
16
- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
16
+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
17
17
 
18
- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
18
+ var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
19
19
 
20
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
20
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
21
21
 
22
22
  var _jsonStableStringify = _interopRequireDefault(require("json-stable-stringify"));
23
23
 
@@ -59,9 +59,9 @@ function loadRefNameMap(_x, _x2, _x3, _x4) {
59
59
 
60
60
 
61
61
  function _loadRefNameMap() {
62
- _loadRefNameMap = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee4(assembly, adapterConf, options, signal) {
62
+ _loadRefNameMap = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4(assembly, adapterConf, options, signal) {
63
63
  var sessionId, refNames, refNameAliases, refNameMap, reversed;
64
- return _index["default"].wrap(function _callee4$(_context4) {
64
+ return _regenerator["default"].wrap(function _callee4$(_context4) {
65
65
  while (1) {
66
66
  switch (_context4.prev = _context4.next) {
67
67
  case 0:
@@ -138,9 +138,9 @@ function assemblyFactory(assemblyConfigType, pluginManager) {
138
138
  maxSize: 1000
139
139
  }),
140
140
  fill: function fill(args, abortSignal, statusCallback) {
141
- return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
141
+ return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
142
142
  var adapterConf, self, options;
143
- return _index["default"].wrap(function _callee$(_context) {
143
+ return _regenerator["default"].wrap(function _callee$(_context) {
144
144
  while (1) {
145
145
  switch (_context.prev = _context.next) {
146
146
  case 0:
@@ -306,9 +306,9 @@ function assemblyFactory(assemblyConfigType, pluginManager) {
306
306
  getRefNameMapForAdapter: function getRefNameMapForAdapter(adapterConf, opts) {
307
307
  var _this = this;
308
308
 
309
- return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2() {
309
+ return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
310
310
  var map;
311
- return _index["default"].wrap(function _callee2$(_context2) {
311
+ return _regenerator["default"].wrap(function _callee2$(_context2) {
312
312
  while (1) {
313
313
  switch (_context2.prev = _context2.next) {
314
314
  case 0:
@@ -342,9 +342,9 @@ function assemblyFactory(assemblyConfigType, pluginManager) {
342
342
  getReverseRefNameMapForAdapter: function getReverseRefNameMapForAdapter(adapterConf, opts) {
343
343
  var _this2 = this;
344
344
 
345
- return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3() {
345
+ return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3() {
346
346
  var map;
347
- return _index["default"].wrap(function _callee3$(_context3) {
347
+ return _regenerator["default"].wrap(function _callee3$(_context3) {
348
348
  while (1) {
349
349
  switch (_context3.prev = _context3.next) {
350
350
  case 0:
@@ -398,9 +398,9 @@ function loadAssemblyReaction(_x5, _x6) {
398
398
  }
399
399
 
400
400
  function _loadAssemblyReaction() {
401
- _loadAssemblyReaction = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee5(props, signal) {
401
+ _loadAssemblyReaction = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee5(props, signal) {
402
402
  var sequenceAdapterConfig, assemblyName, refNameAliasesAdapterConfig, cytobandAdapterConfig, pluginManager, adapterRegions, adapterRegionsWithAssembly, refNameAliases, aliases, cytobands;
403
- return _index["default"].wrap(function _callee5$(_context5) {
403
+ return _regenerator["default"].wrap(function _callee5$(_context5) {
404
404
  while (1) {
405
405
  switch (_context5.prev = _context5.next) {
406
406
  case 0:
@@ -468,11 +468,11 @@ function getRefNameAliases(_x7, _x8, _x9) {
468
468
  }
469
469
 
470
470
  function _getRefNameAliases() {
471
- _getRefNameAliases = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee6(config, pluginManager, signal) {
471
+ _getRefNameAliases = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee6(config, pluginManager, signal) {
472
472
  var _type$getAdapterClass;
473
473
 
474
474
  var type, CLASS, adapter;
475
- return _index["default"].wrap(function _callee6$(_context6) {
475
+ return _regenerator["default"].wrap(function _callee6$(_context6) {
476
476
  while (1) {
477
477
  switch (_context6.prev = _context6.next) {
478
478
  case 0:
@@ -502,9 +502,9 @@ function getCytobands(_x10, _x11) {
502
502
  }
503
503
 
504
504
  function _getCytobands() {
505
- _getCytobands = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee7(config, pluginManager) {
505
+ _getCytobands = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee7(config, pluginManager) {
506
506
  var type, CLASS, adapter;
507
- return _index["default"].wrap(function _callee7$(_context7) {
507
+ return _regenerator["default"].wrap(function _callee7$(_context7) {
508
508
  while (1) {
509
509
  switch (_context7.prev = _context7.next) {
510
510
  case 0:
@@ -533,9 +533,9 @@ function getAssemblyRegions(_x12, _x13, _x14) {
533
533
  }
534
534
 
535
535
  function _getAssemblyRegions() {
536
- _getAssemblyRegions = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee8(config, pluginManager, signal) {
536
+ _getAssemblyRegions = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee8(config, pluginManager, signal) {
537
537
  var type, CLASS, adapter;
538
- return _index["default"].wrap(function _callee8$(_context8) {
538
+ return _regenerator["default"].wrap(function _callee8$(_context8) {
539
539
  while (1) {
540
540
  switch (_context8.prev = _context8.next) {
541
541
  case 0:
package/assemblyManager/assemblyManager.js CHANGED
@@ -1,19 +1,19 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports["default"] = assemblyManagerFactory;
9
9
 
10
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
10
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
12
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
12
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
13
13
 
14
- var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
14
+ var _createForOfIteratorHelper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createForOfIteratorHelper"));
15
15
 
16
- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
16
+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
17
17
 
18
18
  var _mobx = require("mobx");
19
19
 
@@ -95,9 +95,9 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
95
95
  // use this method instead of assemblyManager.get(assemblyName)
96
96
  // get an assembly with regions loaded
97
97
  waitForAssembly: function waitForAssembly(assemblyName) {
98
- return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
98
+ return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
99
99
  var assembly;
100
- return _index["default"].wrap(function _callee$(_context) {
100
+ return _regenerator["default"].wrap(function _callee$(_context) {
101
101
  while (1) {
102
102
  switch (_context.prev = _context.next) {
103
103
  case 0:
@@ -144,9 +144,9 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
144
144
  }))();
145
145
  },
146
146
  getRefNameMapForAdapter: function getRefNameMapForAdapter(adapterConf, assemblyName, opts) {
147
- return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2() {
147
+ return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
148
148
  var assembly;
149
- return _index["default"].wrap(function _callee2$(_context2) {
149
+ return _regenerator["default"].wrap(function _callee2$(_context2) {
150
150
  while (1) {
151
151
  switch (_context2.prev = _context2.next) {
152
152
  case 0:
@@ -180,9 +180,9 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
180
180
  }))();
181
181
  },
182
182
  getReverseRefNameMapForAdapter: function getReverseRefNameMapForAdapter(adapterConf, assemblyName, opts) {
183
- return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3() {
183
+ return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3() {
184
184
  var assembly;
185
- return _index["default"].wrap(function _callee3$(_context3) {
185
+ return _regenerator["default"].wrap(function _callee3$(_context3) {
186
186
  while (1) {
187
187
  switch (_context3.prev = _context3.next) {
188
188
  case 0:
package/assemblyManager/index.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true