@jbrowse/core 1.5.5 → 1.5.9

package/ReExports/modules.js

@@ -1,13 +1,13 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireWildcard = require("@babel/runtime/helpers/interopRequireWildcard")["default"];
 
-var _typeof = require("@babel/runtime/helpers/typeof");
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = void 0;
+exports["default"] = void 0;
 
 var _react = _interopRequireDefault(require("react"));
 
@@ -151,24 +151,20 @@ var mstTypes = _interopRequireWildcard(require("../util/types/mst"));
 
 var _list = _interopRequireDefault(require("./list"));
 
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
 // this is all the stuff that the pluginManager re-exports for plugins to use
 // @material-ui components
 // material-ui lab
 var libs = {
   mobx: mobx,
   'mobx-state-tree': mst,
-  react: _react.default,
+  react: _react["default"],
   'react-dom': ReactDom,
   'mobx-react': mxreact,
-  'prop-types': _propTypes.default,
+  'prop-types': _propTypes["default"],
   // material-ui 1st-level components
   '@material-ui/core': MUICore,
   // special case so plugins can easily use @material-ui/icons; don't remove
-  '@material-ui/core/SvgIcon': _SvgIcon.default,
+  '@material-ui/core/SvgIcon': _SvgIcon["default"],
   '@material-ui/core/utils': MUIUtils,
   // end special case
   '@material-ui/lab': MUILab,
@@ -177,48 +173,48 @@ var libs = {
   // material-ui subcomponents, should get rid of these
   '@material-ui/core/colors': MUIColors,
   '@material-ui/core/styles': MUIStyles,
-  '@material-ui/core/Box': _Box.default,
-  '@material-ui/core/Button': _Button.default,
-  '@material-ui/core/ButtonGroup': _ButtonGroup.default,
-  '@material-ui/core/Card': _Card.default,
-  '@material-ui/core/CardContent': _CardContent.default,
-  '@material-ui/core/Container': _Container.default,
-  '@material-ui/core/Checkbox': _Checkbox.default,
-  '@material-ui/core/Dialog': _Dialog.default,
-  '@material-ui/core/FormGroup': _FormGroup.default,
-  '@material-ui/core/FormLabel': _FormLabel.default,
-  '@material-ui/core/FormControl': _FormControl.default,
-  '@material-ui/core/FormControlLabel': _FormControlLabel.default,
-  '@material-ui/core/Grid': _Grid.default,
-  '@material-ui/core/Icon': _Icon.default,
-  '@material-ui/core/IconButton': _IconButton.default,
-  '@material-ui/core/InputAdornment': _InputAdornment.default,
-  '@material-ui/core/LinearProgress': _LinearProgress.default,
-  '@material-ui/core/ListItemIcon': _ListItemIcon.default,
-  '@material-ui/core/ListItemText': _ListItemText.default,
-  '@material-ui/core/Menu': _Menu.default,
-  '@material-ui/core/MenuItem': _MenuItem.default,
-  '@material-ui/core/RadioGroup': _RadioGroup.default,
-  '@material-ui/core/Radio': _Radio.default,
-  '@material-ui/core/Select': _Select.default,
-  '@material-ui/core/Snackbar': _Snackbar.default,
-  '@material-ui/core/SnackbarContent': _SnackbarContent.default,
-  '@material-ui/core/TextField': _TextField.default,
-  '@material-ui/core/Tooltip': _Tooltip.default,
-  '@material-ui/core/Typography': _Typography.default,
+  '@material-ui/core/Box': _Box["default"],
+  '@material-ui/core/Button': _Button["default"],
+  '@material-ui/core/ButtonGroup': _ButtonGroup["default"],
+  '@material-ui/core/Card': _Card["default"],
+  '@material-ui/core/CardContent': _CardContent["default"],
+  '@material-ui/core/Container': _Container["default"],
+  '@material-ui/core/Checkbox': _Checkbox["default"],
+  '@material-ui/core/Dialog': _Dialog["default"],
+  '@material-ui/core/FormGroup': _FormGroup["default"],
+  '@material-ui/core/FormLabel': _FormLabel["default"],
+  '@material-ui/core/FormControl': _FormControl["default"],
+  '@material-ui/core/FormControlLabel': _FormControlLabel["default"],
+  '@material-ui/core/Grid': _Grid["default"],
+  '@material-ui/core/Icon': _Icon["default"],
+  '@material-ui/core/IconButton': _IconButton["default"],
+  '@material-ui/core/InputAdornment': _InputAdornment["default"],
+  '@material-ui/core/LinearProgress': _LinearProgress["default"],
+  '@material-ui/core/ListItemIcon': _ListItemIcon["default"],
+  '@material-ui/core/ListItemText': _ListItemText["default"],
+  '@material-ui/core/Menu': _Menu["default"],
+  '@material-ui/core/MenuItem': _MenuItem["default"],
+  '@material-ui/core/RadioGroup': _RadioGroup["default"],
+  '@material-ui/core/Radio': _Radio["default"],
+  '@material-ui/core/Select': _Select["default"],
+  '@material-ui/core/Snackbar': _Snackbar["default"],
+  '@material-ui/core/SnackbarContent': _SnackbarContent["default"],
+  '@material-ui/core/TextField': _TextField["default"],
+  '@material-ui/core/Tooltip': _Tooltip["default"],
+  '@material-ui/core/Typography': _Typography["default"],
   // @material-ui lab
-  '@material-ui/lab/ToggleButton': _ToggleButton.default,
-  '@material-ui/lab/ToggleButtonGroup': _ToggleButtonGroup.default,
-  '@jbrowse/core/Plugin': _Plugin.default,
+  '@material-ui/lab/ToggleButton': _ToggleButton["default"],
+  '@material-ui/lab/ToggleButtonGroup': _ToggleButtonGroup["default"],
+  '@jbrowse/core/Plugin': _Plugin["default"],
   '@jbrowse/core/pluggableElementTypes': pluggableElementTypes,
-  '@jbrowse/core/pluggableElementTypes/ViewType': _ViewType.default,
-  '@jbrowse/core/pluggableElementTypes/AdapterType': _AdapterType.default,
-  '@jbrowse/core/pluggableElementTypes/DisplayType': _DisplayType.default,
-  '@jbrowse/core/pluggableElementTypes/TrackType': _TrackType.default,
-  '@jbrowse/core/pluggableElementTypes/WidgetType': _WidgetType.default,
+  '@jbrowse/core/pluggableElementTypes/ViewType': _ViewType["default"],
+  '@jbrowse/core/pluggableElementTypes/AdapterType': _AdapterType["default"],
+  '@jbrowse/core/pluggableElementTypes/DisplayType': _DisplayType["default"],
+  '@jbrowse/core/pluggableElementTypes/TrackType': _TrackType["default"],
+  '@jbrowse/core/pluggableElementTypes/WidgetType': _WidgetType["default"],
   '@jbrowse/core/pluggableElementTypes/models': pluggableElementTypeModels,
   '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType': ServerSideRendererType,
-  '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType': _CircularChordRendererType.default,
+  '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType': _CircularChordRendererType["default"],
   '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType': BoxRendererType,
   '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType': FeatureRendererType,
   '@jbrowse/core/pluggableElementTypes/renderers/RendererType': RendererType,
@@ -229,7 +225,7 @@ var libs = {
   '@jbrowse/core/util/color': coreColor,
   '@jbrowse/core/util/layouts': coreLayouts,
   '@jbrowse/core/util/tracks': trackUtils,
-  '@jbrowse/core/util/Base1DViewModel': _Base1DViewModel.default,
+  '@jbrowse/core/util/Base1DViewModel': _Base1DViewModel["default"],
   '@jbrowse/core/util/io': coreIo,
   '@jbrowse/core/util/mst-reflection': coreMstReflection,
   '@jbrowse/core/util/rxjs': rxjs,
@@ -238,11 +234,11 @@ var libs = {
 }; // make sure that all the items in the ReExports/list array (used by build systems and such)
 // are included here. it's OK if there are some additional ones that are not in the list
 
-_list.default.forEach(function (name) {
+_list["default"].forEach(function (name) {
   if (!(name in libs)) {
     throw new Error("ReExports/modules is missing ".concat(name));
   }
 });
 
 var _default = libs;
-exports.default = _default;
+exports["default"] = _default;

package/TextSearch/BaseResults.js

@@ -1,43 +1,33 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = exports.RefSequenceResult = void 0;
+exports["default"] = exports.RefSequenceResult = void 0;
 
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
+var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
 
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
+var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
 
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
 
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
 
 var BaseResult = /*#__PURE__*/function () {
   function BaseResult(args) {
-    (0, _classCallCheck2.default)(this, BaseResult);
-    (0, _defineProperty2.default)(this, "label", void 0);
-    (0, _defineProperty2.default)(this, "renderingComponent", void 0);
-    (0, _defineProperty2.default)(this, "displayString", void 0);
-    (0, _defineProperty2.default)(this, "matchedAttribute", void 0);
-    (0, _defineProperty2.default)(this, "matchedObject", void 0);
-    (0, _defineProperty2.default)(this, "textSearchAdapter", void 0);
-    (0, _defineProperty2.default)(this, "relevance", void 0);
-    (0, _defineProperty2.default)(this, "trackId", void 0);
-    (0, _defineProperty2.default)(this, "score", void 0);
-    (0, _defineProperty2.default)(this, "locString", void 0);
+    (0, _classCallCheck2["default"])(this, BaseResult);
+    this.label = void 0;
+    this.renderingComponent = void 0;
+    this.displayString = void 0;
+    this.matchedAttribute = void 0;
+    this.matchedObject = void 0;
+    this.textSearchAdapter = void 0;
+    this.relevance = void 0;
+    this.trackId = void 0;
+    this.score = void 0;
+    this.locString = void 0;
     this.label = args.label;
     this.locString = args.locString;
     this.renderingComponent = args.renderingComponent;
@@ -50,7 +40,7 @@ var BaseResult = /*#__PURE__*/function () {
     this.score = args.score || 1;
   }
 
-  (0, _createClass2.default)(BaseResult, [{
+  (0, _createClass2["default"])(BaseResult, [{
     key: "getLabel",
     value: function getLabel() {
       return this.label;
@@ -95,26 +85,26 @@ var BaseResult = /*#__PURE__*/function () {
   return BaseResult;
 }();
 
-exports.default = BaseResult;
+exports["default"] = BaseResult;
 
 var RefSequenceResult = /*#__PURE__*/function (_BaseResult) {
-  (0, _inherits2.default)(RefSequenceResult, _BaseResult);
+  (0, _inherits2["default"])(RefSequenceResult, _BaseResult);
 
-  var _super = _createSuper(RefSequenceResult);
+  var _super = (0, _createSuper2["default"])(RefSequenceResult);
 
   function RefSequenceResult(args) {
     var _args$refName;
 
     var _this;
 
-    (0, _classCallCheck2.default)(this, RefSequenceResult);
+    (0, _classCallCheck2["default"])(this, RefSequenceResult);
     _this = _super.call(this, args);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "refName", void 0);
+    _this.refName = void 0;
     _this.refName = (_args$refName = args.refName) !== null && _args$refName !== void 0 ? _args$refName : '';
     return _this;
   }
 
-  (0, _createClass2.default)(RefSequenceResult, [{
+  (0, _createClass2["default"])(RefSequenceResult, [{
     key: "getLocation",
     value: function getLocation() {
       return this.refName;

package/TextSearch/BaseResults.test.js

@@ -1,22 +1,18 @@
 "use strict";
 
-var _typeof = require("@babel/runtime/helpers/typeof");
+var _interopRequireWildcard = require("@babel/runtime/helpers/interopRequireWildcard")["default"];
 
 var _BaseResults = _interopRequireWildcard(require("./BaseResults"));
 
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
 test('create BaseResult', function () {
-  var baseResult = new _BaseResults.default({
+  var baseResult = new _BaseResults["default"]({
     label: 'chr1'
   });
   expect(baseResult.getLabel()).toEqual('chr1');
   expect(baseResult.getLocation()).toEqual('chr1');
 });
 test('create LocationResult', function () {
-  var locationResult = new _BaseResults.default({
+  var locationResult = new _BaseResults["default"]({
     label: 'location result',
     locString: 'chr1:1-900'
   });

package/TextSearch/TextSearchManager.js

@@ -1,23 +1,21 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = void 0;
+exports["default"] = void 0;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
 
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
+var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
 
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
 
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
 
 var _QuickLRU = _interopRequireDefault(require("../util/QuickLRU"));
 
@@ -26,9 +24,10 @@ var _configuration = require("../configuration");
 /*  text-searching controller */
 var TextSearchManager = /*#__PURE__*/function () {
   function TextSearchManager(pluginManager) {
-    (0, _classCallCheck2.default)(this, TextSearchManager);
-    (0, _defineProperty2.default)(this, "adapterCache", void 0);
-    this.adapterCache = new _QuickLRU.default({
+    (0, _classCallCheck2["default"])(this, TextSearchManager);
+    this.pluginManager = pluginManager;
+    this.adapterCache = void 0;
+    this.adapterCache = new _QuickLRU["default"]({
       maxSize: 15
     });
   }
@@ -37,7 +36,7 @@ var TextSearchManager = /*#__PURE__*/function () {
    */
 
 
-  (0, _createClass2.default)(TextSearchManager, [{
+  (0, _createClass2["default"])(TextSearchManager, [{
     key: "loadTextSearchAdapters",
     value: function loadTextSearchAdapters(searchScope) {
       var _this = this;
@@ -74,7 +73,7 @@ var TextSearchManager = /*#__PURE__*/function () {
           tracks = _ref.tracks;
 
       var assemblyName = searchScope.assemblyName;
-      return [].concat((0, _toConsumableArray2.default)(this.getAdaptersWithAssembly(assemblyName, aggregateTextSearchAdapters)), (0, _toConsumableArray2.default)(this.getAdaptersWithAssembly(assemblyName, tracks.map(function (track) {
+      return [].concat((0, _toConsumableArray2["default"])(this.getAdaptersWithAssembly(assemblyName, aggregateTextSearchAdapters)), (0, _toConsumableArray2["default"])(this.getAdaptersWithAssembly(assemblyName, tracks.map(function (track) {
         return (0, _configuration.readConfObject)(track, ['textSearching', 'textSearchAdapter']);
       }))));
     }
@@ -96,9 +95,9 @@ var TextSearchManager = /*#__PURE__*/function () {
   }, {
     key: "search",
     value: function () {
-      var _search = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(args, searchScope, rankFn) {
+      var _search = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(args, searchScope, rankFn) {
         var textSearchAdapters, results;
-        return _regenerator.default.wrap(function _callee$(_context) {
+        return _regenerator["default"].wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
@@ -147,4 +146,4 @@ var TextSearchManager = /*#__PURE__*/function () {
   return TextSearchManager;
 }();
 
-exports.default = TextSearchManager;
+exports["default"] = TextSearchManager;

package/assemblyManager/assembly.js

@@ -1,23 +1,23 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = assemblyFactory;
+exports["default"] = assemblyFactory;
 
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
 
-var _objectWithoutProperties2 = _interopRequireDefault(require("@babel/runtime/helpers/objectWithoutProperties"));
+var _objectWithoutProperties2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectWithoutProperties"));
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
+var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
 
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
 
 var _jsonStableStringify = _interopRequireDefault(require("json-stable-stringify"));
 
@@ -32,11 +32,6 @@ var _util = require("../util");
 var _QuickLRU = _interopRequireDefault(require("../util/QuickLRU"));
 
 var _excluded = ["signal", "statusCallback"];
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
 // Based on the UCSC Genome Browser chromosome color palette:
 // https://github.com/ucscGenomeBrowser/kent/blob/a50ed53aff81d6fb3e34e6913ce18578292bc24e/src/hg/inc/chromColors.h
 // Some colors darkened to have at least a 3:1 contrast ratio on a white
@@ -64,9 +59,9 @@ function loadRefNameMap(_x, _x2, _x3, _x4) {
 
 
 function _loadRefNameMap() {
-  _loadRefNameMap = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(assembly, adapterConf, options, signal) {
+  _loadRefNameMap = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4(assembly, adapterConf, options, signal) {
     var sessionId, refNames, refNameAliases, refNameMap, reversed;
-    return _regenerator.default.wrap(function _callee4$(_context4) {
+    return _regenerator["default"].wrap(function _callee4$(_context4) {
       while (1) {
         switch (_context4.prev = _context4.next) {
           case 0:
@@ -81,7 +76,7 @@ function _loadRefNameMap() {
 
           case 3:
             _context4.next = 5;
-            return assembly.rpcManager.call(sessionId, 'CoreGetRefNames', _objectSpread({
+            return assembly.rpcManager.call(sessionId, 'CoreGetRefNames', (0, _objectSpread2["default"])({
               adapterConfig: adapterConf,
               signal: signal
             }, options), {
@@ -106,7 +101,7 @@ function _loadRefNameMap() {
             })); // make the reversed map too
 
             reversed = Object.fromEntries(Object.entries(refNameMap).map(function (_ref2) {
-              var _ref3 = (0, _slicedToArray2.default)(_ref2, 2),
+              var _ref3 = (0, _slicedToArray2["default"])(_ref2, 2),
                   canonicalName = _ref3[0],
                   adapterName = _ref3[1];
 
@@ -134,23 +129,23 @@ function checkRefName(refName) {
 }
 
 function getAdapterId(adapterConf) {
-  return (0, _jsonStableStringify.default)(adapterConf);
+  return (0, _jsonStableStringify["default"])(adapterConf);
 }
 
 function assemblyFactory(assemblyConfigType, pluginManager) {
-  var adapterLoads = new _abortablePromiseCache.default({
-    cache: new _QuickLRU.default({
+  var adapterLoads = new _abortablePromiseCache["default"]({
+    cache: new _QuickLRU["default"]({
       maxSize: 1000
     }),
     fill: function fill(args, abortSignal, statusCallback) {
-      return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
+      return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
         var adapterConf, self, options;
-        return _regenerator.default.wrap(function _callee$(_context) {
+        return _regenerator["default"].wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
                 adapterConf = args.adapterConf, self = args.self, options = args.options;
-                return _context.abrupt("return", loadRefNameMap(self, adapterConf, _objectSpread(_objectSpread({}, options), {}, {
+                return _context.abrupt("return", loadRefNameMap(self, adapterConf, (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, options), {}, {
                   statusCallback: statusCallback
                 }), abortSignal));
 
@@ -165,7 +160,7 @@ function assemblyFactory(assemblyConfigType, pluginManager) {
   });
   return _mobxStateTree.types.model({
     configuration: _mobxStateTree.types.safeReference(assemblyConfigType)
-  }).volatile(function () {
+  })["volatile"](function () {
     return {
       error: undefined,
       regions: undefined,
@@ -191,7 +186,7 @@ function assemblyFactory(assemblyConfigType, pluginManager) {
       },
 
       get allAliases() {
-        return [this.name].concat((0, _toConsumableArray2.default)(this.aliases));
+        return [this.name].concat((0, _toConsumableArray2["default"])(this.aliases));
       },
 
       get refNames() {
@@ -289,7 +284,7 @@ function assemblyFactory(assemblyConfigType, pluginManager) {
       getAdapterMapEntry: function getAdapterMapEntry(adapterConf, options) {
         var signal = options.signal,
             statusCallback = options.statusCallback,
-            rest = (0, _objectWithoutProperties2.default)(options, _excluded);
+            rest = (0, _objectWithoutProperties2["default"])(options, _excluded);
 
         if (!options.sessionId) {
           throw new Error('sessionId is required');
@@ -311,9 +306,9 @@ function assemblyFactory(assemblyConfigType, pluginManager) {
       getRefNameMapForAdapter: function getRefNameMapForAdapter(adapterConf, opts) {
         var _this = this;
 
-        return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
+        return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
           var map;
-          return _regenerator.default.wrap(function _callee2$(_context2) {
+          return _regenerator["default"].wrap(function _callee2$(_context2) {
             while (1) {
               switch (_context2.prev = _context2.next) {
                 case 0:
@@ -347,9 +342,9 @@ function assemblyFactory(assemblyConfigType, pluginManager) {
       getReverseRefNameMapForAdapter: function getReverseRefNameMapForAdapter(adapterConf, opts) {
         var _this2 = this;
 
-        return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
+        return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3() {
           var map;
-          return _regenerator.default.wrap(function _callee3$(_context3) {
+          return _regenerator["default"].wrap(function _callee3$(_context3) {
             while (1) {
               switch (_context3.prev = _context3.next) {
                 case 0:
@@ -403,9 +398,9 @@ function loadAssemblyReaction(_x5, _x6) {
 }
 
 function _loadAssemblyReaction() {
-  _loadAssemblyReaction = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5(props, signal) {
+  _loadAssemblyReaction = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee5(props, signal) {
     var sequenceAdapterConfig, assemblyName, refNameAliasesAdapterConfig, cytobandAdapterConfig, pluginManager, adapterRegions, adapterRegionsWithAssembly, refNameAliases, aliases, cytobands;
-    return _regenerator.default.wrap(function _callee5$(_context5) {
+    return _regenerator["default"].wrap(function _callee5$(_context5) {
       while (1) {
         switch (_context5.prev = _context5.next) {
           case 0:
@@ -425,7 +420,7 @@ function _loadAssemblyReaction() {
             adapterRegions = _context5.sent;
             adapterRegionsWithAssembly = adapterRegions.map(function (adapterRegion) {
               checkRefName(adapterRegion.refName);
-              return _objectSpread(_objectSpread({}, adapterRegion), {}, {
+              return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, adapterRegion), {}, {
                 assemblyName: assemblyName
               });
             });
@@ -473,11 +468,11 @@ function getRefNameAliases(_x7, _x8, _x9) {
 }
 
 function _getRefNameAliases() {
-  _getRefNameAliases = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6(config, pluginManager, signal) {
+  _getRefNameAliases = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee6(config, pluginManager, signal) {
     var _type$getAdapterClass;
 
     var type, CLASS, adapter;
-    return _regenerator.default.wrap(function _callee6$(_context6) {
+    return _regenerator["default"].wrap(function _callee6$(_context6) {
       while (1) {
         switch (_context6.prev = _context6.next) {
           case 0:
@@ -507,9 +502,9 @@ function getCytobands(_x10, _x11) {
 }
 
 function _getCytobands() {
-  _getCytobands = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee7(config, pluginManager) {
+  _getCytobands = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee7(config, pluginManager) {
     var type, CLASS, adapter;
-    return _regenerator.default.wrap(function _callee7$(_context7) {
+    return _regenerator["default"].wrap(function _callee7$(_context7) {
       while (1) {
         switch (_context7.prev = _context7.next) {
           case 0:
@@ -538,9 +533,9 @@ function getAssemblyRegions(_x12, _x13, _x14) {
 }
 
 function _getAssemblyRegions() {
-  _getAssemblyRegions = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee8(config, pluginManager, signal) {
+  _getAssemblyRegions = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee8(config, pluginManager, signal) {
     var type, CLASS, adapter;
-    return _regenerator.default.wrap(function _callee8$(_context8) {
+    return _regenerator["default"].wrap(function _callee8$(_context8) {
       while (1) {
         switch (_context8.prev = _context8.next) {
           case 0:

package/assemblyManager/assemblyConfigSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = void 0;
+exports["default"] = void 0;
 
 var _configuration = require("../configuration");
 
@@ -64,4 +64,4 @@ var _default = function _default(pluginManager) {
   });
 };
 
-exports.default = _default;
+exports["default"] = _default;