@jbrowse/core 1.5.5 → 1.5.9

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Files changed (139) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.js +78 -91
  2. package/BaseFeatureWidget/SequenceFeatureDetails.js +56 -64
  3. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
  4. package/BaseFeatureWidget/index.js +1 -1
  5. package/BaseFeatureWidget/index.test.js +3 -3
  6. package/BaseFeatureWidget/types.js +5 -1
  7. package/BaseFeatureWidget/util.js +9 -13
  8. package/CorePlugin.js +19 -31
  9. package/Plugin.js +11 -13
  10. package/PluginLoader.js +32 -37
  11. package/PluginManager.js +55 -56
  12. package/ReExports/index.js +4 -4
  13. package/ReExports/list.js +2 -2
  14. package/ReExports/material-ui-colors.js +20 -20
  15. package/ReExports/modules.js +47 -51
  16. package/TextSearch/BaseResults.js +24 -34
  17. package/TextSearch/BaseResults.test.js +3 -7
  18. package/TextSearch/TextSearchManager.js +15 -16
  19. package/assemblyManager/assembly.js +33 -38
  20. package/assemblyManager/assemblyConfigSchema.js +2 -2
  21. package/assemblyManager/assemblyManager.js +15 -19
  22. package/assemblyManager/index.js +3 -3
  23. package/configuration/configurationSchema.js +17 -19
  24. package/configuration/configurationSlot.js +11 -11
  25. package/configuration/configurationSlot.test.js +5 -5
  26. package/configuration/util.js +5 -5
  27. package/data_adapters/BaseAdapter.js +37 -39
  28. package/data_adapters/BaseAdapter.test.js +23 -29
  29. package/data_adapters/CytobandAdapter.js +15 -21
  30. package/data_adapters/dataAdapterCache.js +8 -8
  31. package/package.json +3 -4
  32. package/pluggableElementTypes/AdapterType.js +21 -30
  33. package/pluggableElementTypes/ConnectionType.js +18 -28
  34. package/pluggableElementTypes/DisplayType.js +17 -27
  35. package/pluggableElementTypes/InternetAccountType.js +14 -24
  36. package/pluggableElementTypes/PluggableElementBase.js +8 -10
  37. package/pluggableElementTypes/RpcMethodType.js +40 -54
  38. package/pluggableElementTypes/RpcMethodType.test.js +16 -22
  39. package/pluggableElementTypes/TextSearchAdapterType.js +15 -25
  40. package/pluggableElementTypes/TrackType.js +15 -25
  41. package/pluggableElementTypes/ViewType.js +15 -25
  42. package/pluggableElementTypes/WidgetType.js +17 -27
  43. package/pluggableElementTypes/index.js +11 -11
  44. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
  45. package/pluggableElementTypes/models/BaseDisplayModel.js +5 -8
  46. package/pluggableElementTypes/models/BaseTrackModel.js +8 -11
  47. package/pluggableElementTypes/models/BaseViewModel.js +3 -3
  48. package/pluggableElementTypes/models/InternetAccountModel.js +4 -4
  49. package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
  50. package/pluggableElementTypes/models/baseTrackConfig.js +4 -7
  51. package/pluggableElementTypes/models/index.js +4 -4
  52. package/pluggableElementTypes/renderers/BoxRendererType.js +38 -48
  53. package/pluggableElementTypes/renderers/CircularChordRendererType.js +12 -18
  54. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +26 -34
  55. package/pluggableElementTypes/renderers/FeatureRendererType.js +35 -45
  56. package/pluggableElementTypes/renderers/RendererType.js +20 -30
  57. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +8 -12
  58. package/pluggableElementTypes/renderers/ServerSideRendererType.js +30 -43
  59. package/pluggableElementTypes/renderers/index.js +8 -8
  60. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +8 -10
  61. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
  62. package/rpc/BaseRpcDriver.js +37 -40
  63. package/rpc/BaseRpcDriver.test.js +48 -62
  64. package/rpc/MainThreadRpcDriver.js +21 -31
  65. package/rpc/RpcManager.js +19 -18
  66. package/rpc/WebWorkerRpcDriver.js +28 -37
  67. package/rpc/configSchema.js +2 -2
  68. package/rpc/coreRpcMethods.js +71 -81
  69. package/rpc/remoteAbortSignals.js +3 -3
  70. package/ui/AboutDialog.js +16 -20
  71. package/ui/App.js +38 -42
  72. package/ui/AssemblySelector.js +5 -5
  73. package/ui/Drawer.js +7 -7
  74. package/ui/DrawerWidget.js +33 -37
  75. package/ui/DropDownMenu.js +9 -21
  76. package/ui/EditableTypography.js +19 -30
  77. package/ui/ErrorMessage.js +5 -5
  78. package/ui/FactoryResetDialog.js +8 -8
  79. package/ui/FatalErrorDialog.js +12 -29
  80. package/ui/FatalErrorDialog.test.js +10 -10
  81. package/ui/FileSelector/FileSelector.js +32 -42
  82. package/ui/FileSelector/LocalFileChooser.js +9 -9
  83. package/ui/FileSelector/UrlChooser.js +4 -4
  84. package/ui/FileSelector/index.js +4 -4
  85. package/ui/Icons.js +9 -9
  86. package/ui/Logo.js +19 -19
  87. package/ui/Menu.js +35 -46
  88. package/ui/NewSessionCards.js +19 -29
  89. package/ui/PrerenderedCanvas.js +10 -27
  90. package/ui/ResizeHandle.js +10 -17
  91. package/ui/SanitizedHTML.js +5 -5
  92. package/ui/SanitizedHTML.test.js +4 -4
  93. package/ui/Snackbar.js +12 -16
  94. package/ui/SnackbarModel.js +1 -1
  95. package/ui/Tooltip.js +7 -11
  96. package/ui/ViewContainer.js +20 -30
  97. package/ui/index.js +13 -17
  98. package/ui/theme.js +11 -15
  99. package/util/Base1DViewModel.js +10 -14
  100. package/util/Base1DViewModel.test.js +5 -5
  101. package/util/QuickLRU.js +26 -30
  102. package/util/aborting.js +15 -25
  103. package/util/analytics.js +6 -6
  104. package/util/blockTypes.js +39 -49
  105. package/util/calculateDynamicBlocks.js +4 -4
  106. package/util/calculateDynamicBlocks.test.js +10 -14
  107. package/util/calculateStaticBlocks.js +1 -1
  108. package/util/calculateStaticBlocks.test.js +15 -15
  109. package/util/compositeMap.js +27 -30
  110. package/util/idMaker.js +4 -4
  111. package/util/index.js +34 -45
  112. package/util/index.test.js +7 -11
  113. package/util/io/RemoteFileWithRangeCache.js +28 -40
  114. package/util/io/index.js +5 -5
  115. package/util/jexl.js +8 -5
  116. package/util/jexlStrings.js +2 -2
  117. package/util/jexlStrings.test.js +2 -2
  118. package/util/layouts/BaseLayout.js +5 -1
  119. package/util/layouts/GranularRectLayout.js +27 -33
  120. package/util/layouts/GranularRectLayout.test.js +10 -10
  121. package/util/layouts/MultiLayout.js +14 -19
  122. package/util/layouts/PrecomputedLayout.js +14 -16
  123. package/util/layouts/PrecomputedMultiLayout.js +17 -23
  124. package/util/layouts/SceneGraph.js +18 -18
  125. package/util/layouts/index.js +6 -6
  126. package/util/offscreenCanvasPonyfill.js +28 -30
  127. package/util/offscreenCanvasUtils.js +5 -5
  128. package/util/range.test.js +20 -20
  129. package/util/rxjs.js +2 -2
  130. package/util/simpleFeature.js +19 -24
  131. package/util/simpleFeature.test.js +3 -3
  132. package/util/stats.js +6 -10
  133. package/util/stats.test.js +14 -14
  134. package/util/types/index.js +32 -34
  135. package/util/types/mst.js +15 -19
  136. package/util/types/util.js +5 -1
  137. package/util/when.js +5 -5
  138. package/babel.config.d.ts +0 -15
  139. package/babel.config.js +0 -19
package/util/io/index.js CHANGED
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -15,7 +15,7 @@ exports.openLocation = openLocation;
15
15
 
16
16
  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
17
17
 
18
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
18
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
19
19
 
20
20
  var _genericFilehandle = require("generic-filehandle");
21
21
 
@@ -41,9 +41,9 @@ function openLocation(location, pluginManager) {
41
41
  }
42
42
 
43
43
  function _checkAuthNeededFetch() {
44
- _checkAuthNeededFetch = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(url, opts) {
44
+ _checkAuthNeededFetch = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(url, opts) {
45
45
  var response, authHeaders;
46
- return _regenerator.default.wrap(function _callee$(_context) {
46
+ return _regenerator["default"].wrap(function _callee$(_context) {
47
47
  while (1) {
48
48
  switch (_context.prev = _context.next) {
49
49
  case 0:
@@ -89,7 +89,7 @@ function openLocation(location, pluginManager) {
89
89
  throw new Error('No local path provided');
90
90
  }
91
91
 
92
- if (_detectNode.default) {
92
+ if (_detectNode["default"]) {
93
93
  return new _genericFilehandle.LocalFile(location.localPath);
94
94
  } else {
95
95
  throw new Error("can't use local files in the browser");
package/util/jexl.js CHANGED
@@ -1,24 +1,27 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = _default;
8
+ exports["default"] = _default;
9
9
 
10
10
  var _jexl = _interopRequireDefault(require("jexl"));
11
11
 
12
12
  function
13
13
  /* config?: any*/
14
14
  _default() {
15
- var j = new _jexl.default.Jexl(); // someday will make sure all of configs callbacks are added in, including
15
+ var j = new _jexl["default"].Jexl(); // someday will make sure all of configs callbacks are added in, including
16
16
  // ones passed in
17
17
  // below are core functions
18
18
 
19
19
  j.addFunction('get', function (feature, data) {
20
20
  return feature.get(data);
21
21
  });
22
+ j.addFunction('parent', function (feature) {
23
+ return feature.parent();
24
+ });
22
25
  j.addFunction('id', function (feature) {
23
26
  return feature.id();
24
27
  }); // let user cast a jexl type into a javascript type
@@ -46,8 +49,8 @@ _default() {
46
49
  j.addFunction('parseInt', Number.parseInt);
47
50
  j.addFunction('parseFloat', Number.parseFloat); // string
48
51
 
49
- j.addFunction('split', function (str, char) {
50
- return str.split(char);
52
+ j.addFunction('split', function (str, _char) {
53
+ return str.split(_char);
51
54
  });
52
55
  j.addFunction('charAt', function (str, index) {
53
56
  return str.charAt(index);
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -32,7 +32,7 @@ jexl) {
32
32
  }
33
33
 
34
34
  var code = str.split('jexl:')[1];
35
- var compiled = jexl ? jexl.compile("".concat(code)) : (0, _jexl.default)().compile("".concat(code));
35
+ var compiled = jexl ? jexl.compile("".concat(code)) : (0, _jexl["default"])().compile("".concat(code));
36
36
  compilationCache[cacheKey] = compiled;
37
37
  }
38
38
 
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  var _jexlStrings = require("./jexlStrings");
6
6
 
@@ -29,7 +29,7 @@ describe('function string parsing', function () {
29
29
  expect(result).toEqual(35);
30
30
  });
31
31
  it('can use the loaded core helper functions to access feature info', function () {
32
- var feature = new _simpleFeature.default({
32
+ var feature = new _simpleFeature["default"]({
33
33
  uniqueId: 'jexlFeature',
34
34
  score: 10,
35
35
  start: 1,
@@ -1 +1,5 @@
1
- "use strict";
1
+ "use strict";
2
+
3
+ Object.defineProperty(exports, "__esModule", {
4
+ value: true
5
+ });
@@ -1,28 +1,22 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = void 0;
8
+ exports["default"] = void 0;
9
9
 
10
- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
10
+ var _createForOfIteratorHelper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createForOfIteratorHelper"));
11
11
 
12
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
12
+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
13
13
 
14
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
14
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
15
15
 
16
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
16
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
17
17
 
18
18
  var _index = require("../index");
19
19
 
20
- function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
21
-
22
- function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
23
-
24
- function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
25
-
26
20
  /**
27
21
  * Rectangle-layout manager that lays out rectangles using bitmaps at
28
22
  * resolution that, for efficiency, may be somewhat lower than that of
@@ -41,11 +35,11 @@ function segmentsIntersect(x1, x2, y1, y2) {
41
35
  // a single row in the layout
42
36
  var LayoutRow = /*#__PURE__*/function () {
43
37
  function LayoutRow() {
44
- (0, _classCallCheck2.default)(this, LayoutRow);
45
- (0, _defineProperty2.default)(this, "padding", void 0);
46
- (0, _defineProperty2.default)(this, "allFilled", void 0);
47
- (0, _defineProperty2.default)(this, "widthLimit", void 0);
48
- (0, _defineProperty2.default)(this, "rowState", void 0);
38
+ (0, _classCallCheck2["default"])(this, LayoutRow);
39
+ this.padding = void 0;
40
+ this.allFilled = void 0;
41
+ this.widthLimit = void 0;
42
+ this.rowState = void 0;
49
43
  this.padding = 1;
50
44
  this.widthLimit = 1000000; // this.rowState.offset is the offset of the bits array relative to the genomic coordinates
51
45
  // (modified by pitchX, but we don't know that in this class)
@@ -59,7 +53,7 @@ var LayoutRow = /*#__PURE__*/function () {
59
53
  // }
60
54
 
61
55
 
62
- (0, _createClass2.default)(LayoutRow, [{
56
+ (0, _createClass2["default"])(LayoutRow, [{
63
57
  key: "setAllFilled",
64
58
  value: function setAllFilled(data) {
65
59
  this.allFilled = data;
@@ -307,16 +301,16 @@ var GranularRectLayout = /*#__PURE__*/function () {
307
301
  _ref$displayMode = _ref.displayMode,
308
302
  displayMode = _ref$displayMode === void 0 ? 'normal' : _ref$displayMode;
309
303
 
310
- (0, _classCallCheck2.default)(this, GranularRectLayout);
311
- (0, _defineProperty2.default)(this, "pitchX", void 0);
312
- (0, _defineProperty2.default)(this, "pitchY", void 0);
313
- (0, _defineProperty2.default)(this, "hardRowLimit", void 0);
314
- (0, _defineProperty2.default)(this, "bitmap", void 0);
315
- (0, _defineProperty2.default)(this, "rectangles", void 0);
316
- (0, _defineProperty2.default)(this, "maxHeightReached", void 0);
317
- (0, _defineProperty2.default)(this, "maxHeight", void 0);
318
- (0, _defineProperty2.default)(this, "displayMode", void 0);
319
- (0, _defineProperty2.default)(this, "pTotalHeight", void 0);
304
+ (0, _classCallCheck2["default"])(this, GranularRectLayout);
305
+ this.pitchX = void 0;
306
+ this.pitchY = void 0;
307
+ this.hardRowLimit = void 0;
308
+ this.bitmap = void 0;
309
+ this.rectangles = void 0;
310
+ this.maxHeightReached = void 0;
311
+ this.maxHeight = void 0;
312
+ this.displayMode = void 0;
313
+ this.pTotalHeight = void 0;
320
314
  this.pitchX = pitchX;
321
315
  this.pitchY = pitchY;
322
316
  this.hardRowLimit = hardRowLimit;
@@ -339,7 +333,7 @@ var GranularRectLayout = /*#__PURE__*/function () {
339
333
  */
340
334
 
341
335
 
342
- (0, _createClass2.default)(GranularRectLayout, [{
336
+ (0, _createClass2["default"])(GranularRectLayout, [{
343
337
  key: "addRect",
344
338
  value: function addRect(id, left, right, height, data) {
345
339
  // if we have already laid it out, return its layout
@@ -524,7 +518,7 @@ var GranularRectLayout = /*#__PURE__*/function () {
524
518
  var _this = this;
525
519
 
526
520
  return new Map(Array.from(this.rectangles.entries()).map(function (_ref2) {
527
- var _ref3 = (0, _slicedToArray2.default)(_ref2, 2),
521
+ var _ref3 = (0, _slicedToArray2["default"])(_ref2, 2),
528
522
  id = _ref3[0],
529
523
  rect = _ref3[1];
530
524
 
@@ -543,12 +537,12 @@ var GranularRectLayout = /*#__PURE__*/function () {
543
537
  var regionRectangles = {};
544
538
  var maxHeightReached = false;
545
539
 
546
- var _iterator = _createForOfIteratorHelper(this.rectangles.entries()),
540
+ var _iterator = (0, _createForOfIteratorHelper2["default"])(this.rectangles.entries()),
547
541
  _step;
548
542
 
549
543
  try {
550
544
  for (_iterator.s(); !(_step = _iterator.n()).done;) {
551
- var _step$value = (0, _slicedToArray2.default)(_step.value, 2),
545
+ var _step$value = (0, _slicedToArray2["default"])(_step.value, 2),
552
546
  id = _step$value[0],
553
547
  rect = _step$value[1];
554
548
 
@@ -598,4 +592,4 @@ var GranularRectLayout = /*#__PURE__*/function () {
598
592
  return GranularRectLayout;
599
593
  }();
600
594
 
601
- exports.default = GranularRectLayout;
595
+ exports["default"] = GranularRectLayout;
@@ -1,26 +1,26 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
- var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
5
+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
6
6
 
7
7
  var _GranularRectLayout = _interopRequireDefault(require("./GranularRectLayout"));
8
8
 
9
9
  describe('GranularRectLayout', function () {
10
10
  it('lays out non-overlapping features end to end', function () {
11
- var l = new _GranularRectLayout.default({
11
+ var l = new _GranularRectLayout["default"]({
12
12
  pitchX: 10,
13
13
  pitchY: 4
14
14
  });
15
15
  var testRects = [['1,0', 4133, 5923, 16], ['1,1', 11299, 12389, 16], ['1,2', 21050, 22778, 16], ['1,3', 41125, 47459, 16], ['1,4', 47926, 49272, 16], ['1,5', 50240, 52495, 16], ['1,6', 53329, 56283, 16], ['1,7', 59309, 79441, 16], ['1,8', 80359, 83196, 16], ['1,9', 92147, 94188, 16], ['1,10', 96241, 103626, 16], ['1,11', 104396, 108110, 16], ['1,12', 111878, 125251, 16], ['1,13', 125747, 128085, 16], ['1,14', 131492, 132641, 16], ['1,15', 133857, 134931, 16], ['1,16', 137023, 138220, 16], ['1,17', 140703, 145668, 16], ['1,18', 146045, 147059, 16], ['1,19', 162296, 165395, 16], ['1,20', 168531, 170795, 16], ['1,21', 174812, 180475, 16], ['1,22', 184302, 188826, 16], ['1,23', 189609, 191141, 16], ['1,24', 199799, 201389, 16], ['1,25', 203436, 211345, 16], ['1,26', 212100, 212379, 16], ['1,27', 213418, 214627, 16], ['1,28', 215115, 219344, 16], ['1,29', 220067, 222525, 16], ['1,30', 223308, 228141, 16], ['1,31', 234473, 236768, 16], ['1,32', 239691, 245015, 16]];
16
16
 
17
17
  for (var i = 0; i < testRects.length; i += 1) {
18
- var top = l.addRect.apply(l, (0, _toConsumableArray2.default)(testRects[i]));
18
+ var top = l.addRect.apply(l, (0, _toConsumableArray2["default"])(testRects[i]));
19
19
  expect(top).toEqual(0);
20
20
  }
21
21
  });
22
22
  it('stacks up overlapping features', function () {
23
- var l = new _GranularRectLayout.default({
23
+ var l = new _GranularRectLayout["default"]({
24
24
  pitchX: 10,
25
25
  pitchY: 4
26
26
  });
@@ -31,12 +31,12 @@ describe('GranularRectLayout', function () {
31
31
  }
32
32
 
33
33
  for (var _i = 0; _i < testRects.length; _i += 1) {
34
- var top = l.addRect.apply(l, (0, _toConsumableArray2.default)(testRects[_i]));
34
+ var top = l.addRect.apply(l, (0, _toConsumableArray2["default"])(testRects[_i]));
35
35
  expect(top).toEqual(_i % 2 * 4);
36
36
  }
37
37
  });
38
38
  it('discards regions', function () {
39
- var l = new _GranularRectLayout.default({
39
+ var l = new _GranularRectLayout["default"]({
40
40
  pitchX: 10,
41
41
  pitchY: 4
42
42
  });
@@ -59,7 +59,7 @@ describe('GranularRectLayout', function () {
59
59
  }); // see issue #486
60
60
 
61
61
  it('tests that adding +/- pitchX fixes resolution causing errors', function () {
62
- var l = new _GranularRectLayout.default({
62
+ var l = new _GranularRectLayout["default"]({
63
63
  pitchX: 91.21851599727707,
64
64
  pitchY: 3
65
65
  });
@@ -71,7 +71,7 @@ describe('GranularRectLayout', function () {
71
71
  });
72
72
  it('tests reinitializing layout due to throwing away old one', function () {
73
73
  var spy = jest.spyOn(console, 'warn').mockImplementation(function () {});
74
- var l = new _GranularRectLayout.default({
74
+ var l = new _GranularRectLayout["default"]({
75
75
  pitchX: 1,
76
76
  pitchY: 1,
77
77
  maxHeight: 600
@@ -84,7 +84,7 @@ describe('GranularRectLayout', function () {
84
84
  spy.mockRestore();
85
85
  });
86
86
  it('tests adding a gigantic feature that fills entire row with another smaller added on top', function () {
87
- var l = new _GranularRectLayout.default({
87
+ var l = new _GranularRectLayout["default"]({
88
88
  pitchX: 100,
89
89
  pitchY: 1,
90
90
  maxHeight: 600
@@ -1,25 +1,19 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = void 0;
8
+ exports["default"] = void 0;
9
9
 
10
- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
10
+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
11
11
 
12
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
12
+ var _createForOfIteratorHelper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createForOfIteratorHelper"));
13
13
 
14
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
14
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
15
15
 
16
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
17
-
18
- function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
19
-
20
- function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
21
-
22
- function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
16
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
23
17
 
24
18
  /* eslint-disable @typescript-eslint/no-explicit-any */
25
19
  var MultiLayout = /*#__PURE__*/function () {
@@ -30,14 +24,15 @@ var MultiLayout = /*#__PURE__*/function () {
30
24
  */
31
25
  function MultiLayout(SubLayoutClass) {
32
26
  var layoutArgs = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {};
33
- (0, _classCallCheck2.default)(this, MultiLayout);
34
- (0, _defineProperty2.default)(this, "subLayouts", new Map());
35
- (0, _defineProperty2.default)(this, "subLayoutConstructorArgs", {});
27
+ (0, _classCallCheck2["default"])(this, MultiLayout);
28
+ this.SubLayoutClass = SubLayoutClass;
29
+ this.subLayouts = new Map();
30
+ this.subLayoutConstructorArgs = {};
36
31
  this.subLayouts = new Map();
37
32
  this.subLayoutConstructorArgs = layoutArgs;
38
33
  }
39
34
 
40
- (0, _createClass2.default)(MultiLayout, [{
35
+ (0, _createClass2["default"])(MultiLayout, [{
41
36
  key: "getSublayout",
42
37
  value: function getSublayout(layoutName) {
43
38
  var subLayout = this.subLayouts.get(layoutName);
@@ -67,12 +62,12 @@ var MultiLayout = /*#__PURE__*/function () {
67
62
  value: function toJSON() {
68
63
  var data = {};
69
64
 
70
- var _iterator = _createForOfIteratorHelper(this.subLayouts.entries()),
65
+ var _iterator = (0, _createForOfIteratorHelper2["default"])(this.subLayouts.entries()),
71
66
  _step;
72
67
 
73
68
  try {
74
69
  for (_iterator.s(); !(_step = _iterator.n()).done;) {
75
- var _step$value = (0, _slicedToArray2.default)(_step.value, 2),
70
+ var _step$value = (0, _slicedToArray2["default"])(_step.value, 2),
76
71
  layoutName = _step$value[0],
77
72
  sublayout = _step$value[1];
78
73
 
@@ -90,4 +85,4 @@ var MultiLayout = /*#__PURE__*/function () {
90
85
  return MultiLayout;
91
86
  }();
92
87
 
93
- exports.default = MultiLayout;
88
+ exports["default"] = MultiLayout;
@@ -1,19 +1,17 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = void 0;
8
+ exports["default"] = void 0;
9
9
 
10
- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
10
+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
11
11
 
12
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
12
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
13
13
 
14
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
15
-
16
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
14
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
17
15
 
18
16
  var _ = require("..");
19
17
 
@@ -24,19 +22,19 @@ var PrecomputedLayout = /*#__PURE__*/function () {
24
22
  var rectangles = _ref.rectangles,
25
23
  totalHeight = _ref.totalHeight,
26
24
  maxHeightReached = _ref.maxHeightReached;
27
- (0, _classCallCheck2.default)(this, PrecomputedLayout);
28
- (0, _defineProperty2.default)(this, "rectangles", void 0);
29
- (0, _defineProperty2.default)(this, "totalHeight", void 0);
30
- (0, _defineProperty2.default)(this, "maxHeightReached", void 0);
31
- (0, _defineProperty2.default)(this, "rbush", void 0);
25
+ (0, _classCallCheck2["default"])(this, PrecomputedLayout);
26
+ this.rectangles = void 0;
27
+ this.totalHeight = void 0;
28
+ this.maxHeightReached = void 0;
29
+ this.rbush = void 0;
32
30
  this.rectangles = new Map(Object.entries(rectangles)); // rectangles is of the form "featureId": [leftPx, topPx, rightPx, bottomPx]
33
31
 
34
32
  this.totalHeight = totalHeight;
35
33
  this.maxHeightReached = maxHeightReached;
36
- this.rbush = new _rbush.default();
34
+ this.rbush = new _rbush["default"]();
37
35
 
38
36
  for (var _i = 0, _Object$entries = Object.entries(rectangles); _i < _Object$entries.length; _i++) {
39
- var _Object$entries$_i = (0, _slicedToArray2.default)(_Object$entries[_i], 2),
37
+ var _Object$entries$_i = (0, _slicedToArray2["default"])(_Object$entries[_i], 2),
40
38
  key = _Object$entries$_i[0],
41
39
  layout = _Object$entries$_i[1];
42
40
 
@@ -50,7 +48,7 @@ var PrecomputedLayout = /*#__PURE__*/function () {
50
48
  }
51
49
  }
52
50
 
53
- (0, _createClass2.default)(PrecomputedLayout, [{
51
+ (0, _createClass2["default"])(PrecomputedLayout, [{
54
52
  key: "addRect",
55
53
  value: function addRect(id) {
56
54
  var rect = this.rectangles.get(id);
@@ -125,4 +123,4 @@ var PrecomputedLayout = /*#__PURE__*/function () {
125
123
  return PrecomputedLayout;
126
124
  }();
127
125
 
128
- exports.default = PrecomputedLayout;
126
+ exports["default"] = PrecomputedLayout;
@@ -1,60 +1,54 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = void 0;
8
+ exports["default"] = void 0;
9
9
 
10
- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
10
+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
11
11
 
12
- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
12
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/inherits"));
13
13
 
14
- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
14
+ var _createSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createSuper"));
15
15
 
16
- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
16
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
17
17
 
18
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
19
-
20
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
18
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
21
19
 
22
20
  var _MultiLayout2 = _interopRequireDefault(require("./MultiLayout"));
23
21
 
24
22
  var _PrecomputedLayout = _interopRequireDefault(require("./PrecomputedLayout"));
25
23
 
26
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
27
-
28
- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
29
-
30
- var ThrowingLayout = /*#__PURE__*/(0, _createClass2.default)(function ThrowingLayout() {
31
- (0, _classCallCheck2.default)(this, ThrowingLayout);
24
+ var ThrowingLayout = /*#__PURE__*/(0, _createClass2["default"])(function ThrowingLayout() {
25
+ (0, _classCallCheck2["default"])(this, ThrowingLayout);
32
26
  throw new Error('invalid layout name');
33
27
  });
34
28
 
35
29
  var PrecomputedMultiLayout = /*#__PURE__*/function (_MultiLayout) {
36
- (0, _inherits2.default)(PrecomputedMultiLayout, _MultiLayout);
30
+ (0, _inherits2["default"])(PrecomputedMultiLayout, _MultiLayout);
37
31
 
38
- var _super = _createSuper(PrecomputedMultiLayout);
32
+ var _super = (0, _createSuper2["default"])(PrecomputedMultiLayout);
39
33
 
40
34
  function PrecomputedMultiLayout(json) {
41
35
  var _this;
42
36
 
43
- (0, _classCallCheck2.default)(this, PrecomputedMultiLayout);
37
+ (0, _classCallCheck2["default"])(this, PrecomputedMultiLayout);
44
38
  // use ThrowingLayout because there is not supposed to be any creation
45
39
  // of new layouts in a precomputed layout
46
40
  _this = _super.call(this, ThrowingLayout);
47
41
  Object.entries(json).forEach(function (_ref) {
48
- var _ref2 = (0, _slicedToArray2.default)(_ref, 2),
42
+ var _ref2 = (0, _slicedToArray2["default"])(_ref, 2),
49
43
  layoutName = _ref2[0],
50
44
  sublayoutJson = _ref2[1];
51
45
 
52
- _this.subLayouts.set(layoutName, new _PrecomputedLayout.default(sublayoutJson));
46
+ _this.subLayouts.set(layoutName, new _PrecomputedLayout["default"](sublayoutJson));
53
47
  });
54
48
  return _this;
55
49
  }
56
50
 
57
- return (0, _createClass2.default)(PrecomputedMultiLayout);
58
- }(_MultiLayout2.default);
51
+ return (0, _createClass2["default"])(PrecomputedMultiLayout);
52
+ }(_MultiLayout2["default"]);
59
53
 
60
- exports.default = PrecomputedMultiLayout;
54
+ exports["default"] = PrecomputedMultiLayout;
@@ -1,36 +1,36 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = void 0;
8
+ exports["default"] = void 0;
9
9
 
10
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
10
+ var _createForOfIteratorHelper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createForOfIteratorHelper"));
11
11
 
12
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
12
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
13
13
 
14
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
14
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
15
15
 
16
16
  var _ = require("..");
17
17
 
18
- function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
19
-
20
- function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
21
-
22
- function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
23
-
24
18
  var SceneGraph = /*#__PURE__*/function () {
25
19
  /**
26
20
  * note: all coordinates are inter-base or inter-pixel coordinates
27
21
  */
28
22
  function SceneGraph(name, left, top, width, height, // eslint-disable-next-line @typescript-eslint/no-explicit-any
29
23
  data) {
30
- (0, _classCallCheck2.default)(this, SceneGraph);
31
- (0, _defineProperty2.default)(this, "children", void 0);
32
- (0, _defineProperty2.default)(this, "absoluteCache", void 0);
33
- (0, _defineProperty2.default)(this, "parent", void 0);
24
+ (0, _classCallCheck2["default"])(this, SceneGraph);
25
+ this.name = name;
26
+ this.left = left;
27
+ this.top = top;
28
+ this.width = width;
29
+ this.height = height;
30
+ this.data = data;
31
+ this.children = void 0;
32
+ this.absoluteCache = void 0;
33
+ this.parent = void 0;
34
34
 
35
35
  if (_.inDevelopment && (typeof name !== 'string' || typeof left !== 'number' || Number.isNaN(left) || typeof top !== 'number' || Number.isNaN(top) || typeof width !== 'number' || Number.isNaN(width) || typeof height !== 'number' || Number.isNaN(height))) {
36
36
  throw new TypeError('invalid SceneGraph arguments');
@@ -42,7 +42,7 @@ var SceneGraph = /*#__PURE__*/function () {
42
42
  };
43
43
  }
44
44
 
45
- (0, _createClass2.default)(SceneGraph, [{
45
+ (0, _createClass2["default"])(SceneGraph, [{
46
46
  key: "addChild",
47
47
  value: function addChild(nameOrSceneGraph, left, top, width, height, // eslint-disable-next-line @typescript-eslint/no-explicit-any
48
48
  data) {
@@ -149,7 +149,7 @@ var SceneGraph = /*#__PURE__*/function () {
149
149
  }, {
150
150
  key: "walkChildren",
151
151
  value: function walkChildren(callback) {
152
- var _iterator = _createForOfIteratorHelper(this.children.values()),
152
+ var _iterator = (0, _createForOfIteratorHelper2["default"])(this.children.values()),
153
153
  _step;
154
154
 
155
155
  try {
@@ -210,4 +210,4 @@ var SceneGraph = /*#__PURE__*/function () {
210
210
  return SceneGraph;
211
211
  }();
212
212
 
213
- exports.default = SceneGraph;
213
+ exports["default"] = SceneGraph;