@jbrowse/core 1.5.5 → 1.5.9

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Files changed (139) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.js +78 -91
  2. package/BaseFeatureWidget/SequenceFeatureDetails.js +56 -64
  3. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
  4. package/BaseFeatureWidget/index.js +1 -1
  5. package/BaseFeatureWidget/index.test.js +3 -3
  6. package/BaseFeatureWidget/types.js +5 -1
  7. package/BaseFeatureWidget/util.js +9 -13
  8. package/CorePlugin.js +19 -31
  9. package/Plugin.js +11 -13
  10. package/PluginLoader.js +32 -37
  11. package/PluginManager.js +55 -56
  12. package/ReExports/index.js +4 -4
  13. package/ReExports/list.js +2 -2
  14. package/ReExports/material-ui-colors.js +20 -20
  15. package/ReExports/modules.js +47 -51
  16. package/TextSearch/BaseResults.js +24 -34
  17. package/TextSearch/BaseResults.test.js +3 -7
  18. package/TextSearch/TextSearchManager.js +15 -16
  19. package/assemblyManager/assembly.js +33 -38
  20. package/assemblyManager/assemblyConfigSchema.js +2 -2
  21. package/assemblyManager/assemblyManager.js +15 -19
  22. package/assemblyManager/index.js +3 -3
  23. package/configuration/configurationSchema.js +17 -19
  24. package/configuration/configurationSlot.js +11 -11
  25. package/configuration/configurationSlot.test.js +5 -5
  26. package/configuration/util.js +5 -5
  27. package/data_adapters/BaseAdapter.js +37 -39
  28. package/data_adapters/BaseAdapter.test.js +23 -29
  29. package/data_adapters/CytobandAdapter.js +15 -21
  30. package/data_adapters/dataAdapterCache.js +8 -8
  31. package/package.json +3 -4
  32. package/pluggableElementTypes/AdapterType.js +21 -30
  33. package/pluggableElementTypes/ConnectionType.js +18 -28
  34. package/pluggableElementTypes/DisplayType.js +17 -27
  35. package/pluggableElementTypes/InternetAccountType.js +14 -24
  36. package/pluggableElementTypes/PluggableElementBase.js +8 -10
  37. package/pluggableElementTypes/RpcMethodType.js +40 -54
  38. package/pluggableElementTypes/RpcMethodType.test.js +16 -22
  39. package/pluggableElementTypes/TextSearchAdapterType.js +15 -25
  40. package/pluggableElementTypes/TrackType.js +15 -25
  41. package/pluggableElementTypes/ViewType.js +15 -25
  42. package/pluggableElementTypes/WidgetType.js +17 -27
  43. package/pluggableElementTypes/index.js +11 -11
  44. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
  45. package/pluggableElementTypes/models/BaseDisplayModel.js +5 -8
  46. package/pluggableElementTypes/models/BaseTrackModel.js +8 -11
  47. package/pluggableElementTypes/models/BaseViewModel.js +3 -3
  48. package/pluggableElementTypes/models/InternetAccountModel.js +4 -4
  49. package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
  50. package/pluggableElementTypes/models/baseTrackConfig.js +4 -7
  51. package/pluggableElementTypes/models/index.js +4 -4
  52. package/pluggableElementTypes/renderers/BoxRendererType.js +38 -48
  53. package/pluggableElementTypes/renderers/CircularChordRendererType.js +12 -18
  54. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +26 -34
  55. package/pluggableElementTypes/renderers/FeatureRendererType.js +35 -45
  56. package/pluggableElementTypes/renderers/RendererType.js +20 -30
  57. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +8 -12
  58. package/pluggableElementTypes/renderers/ServerSideRendererType.js +30 -43
  59. package/pluggableElementTypes/renderers/index.js +8 -8
  60. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +8 -10
  61. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
  62. package/rpc/BaseRpcDriver.js +37 -40
  63. package/rpc/BaseRpcDriver.test.js +48 -62
  64. package/rpc/MainThreadRpcDriver.js +21 -31
  65. package/rpc/RpcManager.js +19 -18
  66. package/rpc/WebWorkerRpcDriver.js +28 -37
  67. package/rpc/configSchema.js +2 -2
  68. package/rpc/coreRpcMethods.js +71 -81
  69. package/rpc/remoteAbortSignals.js +3 -3
  70. package/ui/AboutDialog.js +16 -20
  71. package/ui/App.js +38 -42
  72. package/ui/AssemblySelector.js +5 -5
  73. package/ui/Drawer.js +7 -7
  74. package/ui/DrawerWidget.js +33 -37
  75. package/ui/DropDownMenu.js +9 -21
  76. package/ui/EditableTypography.js +19 -30
  77. package/ui/ErrorMessage.js +5 -5
  78. package/ui/FactoryResetDialog.js +8 -8
  79. package/ui/FatalErrorDialog.js +12 -29
  80. package/ui/FatalErrorDialog.test.js +10 -10
  81. package/ui/FileSelector/FileSelector.js +32 -42
  82. package/ui/FileSelector/LocalFileChooser.js +9 -9
  83. package/ui/FileSelector/UrlChooser.js +4 -4
  84. package/ui/FileSelector/index.js +4 -4
  85. package/ui/Icons.js +9 -9
  86. package/ui/Logo.js +19 -19
  87. package/ui/Menu.js +35 -46
  88. package/ui/NewSessionCards.js +19 -29
  89. package/ui/PrerenderedCanvas.js +10 -27
  90. package/ui/ResizeHandle.js +10 -17
  91. package/ui/SanitizedHTML.js +5 -5
  92. package/ui/SanitizedHTML.test.js +4 -4
  93. package/ui/Snackbar.js +12 -16
  94. package/ui/SnackbarModel.js +1 -1
  95. package/ui/Tooltip.js +7 -11
  96. package/ui/ViewContainer.js +20 -30
  97. package/ui/index.js +13 -17
  98. package/ui/theme.js +11 -15
  99. package/util/Base1DViewModel.js +10 -14
  100. package/util/Base1DViewModel.test.js +5 -5
  101. package/util/QuickLRU.js +26 -30
  102. package/util/aborting.js +15 -25
  103. package/util/analytics.js +6 -6
  104. package/util/blockTypes.js +39 -49
  105. package/util/calculateDynamicBlocks.js +4 -4
  106. package/util/calculateDynamicBlocks.test.js +10 -14
  107. package/util/calculateStaticBlocks.js +1 -1
  108. package/util/calculateStaticBlocks.test.js +15 -15
  109. package/util/compositeMap.js +27 -30
  110. package/util/idMaker.js +4 -4
  111. package/util/index.js +34 -45
  112. package/util/index.test.js +7 -11
  113. package/util/io/RemoteFileWithRangeCache.js +28 -40
  114. package/util/io/index.js +5 -5
  115. package/util/jexl.js +8 -5
  116. package/util/jexlStrings.js +2 -2
  117. package/util/jexlStrings.test.js +2 -2
  118. package/util/layouts/BaseLayout.js +5 -1
  119. package/util/layouts/GranularRectLayout.js +27 -33
  120. package/util/layouts/GranularRectLayout.test.js +10 -10
  121. package/util/layouts/MultiLayout.js +14 -19
  122. package/util/layouts/PrecomputedLayout.js +14 -16
  123. package/util/layouts/PrecomputedMultiLayout.js +17 -23
  124. package/util/layouts/SceneGraph.js +18 -18
  125. package/util/layouts/index.js +6 -6
  126. package/util/offscreenCanvasPonyfill.js +28 -30
  127. package/util/offscreenCanvasUtils.js +5 -5
  128. package/util/range.test.js +20 -20
  129. package/util/rxjs.js +2 -2
  130. package/util/simpleFeature.js +19 -24
  131. package/util/simpleFeature.test.js +3 -3
  132. package/util/stats.js +6 -10
  133. package/util/stats.test.js +14 -14
  134. package/util/types/index.js +32 -34
  135. package/util/types/mst.js +15 -19
  136. package/util/types/util.js +5 -1
  137. package/util/when.js +5 -5
  138. package/babel.config.d.ts +0 -15
  139. package/babel.config.js +0 -19
package/Plugin.js CHANGED
@@ -1,31 +1,29 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports.default = void 0;
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+ exports["default"] = void 0;
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- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
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- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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-
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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  /**
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  function Plugin() {
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- (0, _defineProperty2.default)(this, "configurationSchema", undefined);
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+ (0, _classCallCheck2["default"])(this, Plugin);
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+ this.url = void 0;
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+ this.version = void 0;
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+ this.configurationSchema = undefined;
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- (0, _createClass2.default)(Plugin, [{
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+ (0, _createClass2["default"])(Plugin, [{
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  value: function install(_pluginManager) {}
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@@ -35,4 +33,4 @@ var Plugin = /*#__PURE__*/function () {
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  return Plugin;
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- exports.default = Plugin;
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+ exports["default"] = Plugin;
package/PluginLoader.js CHANGED
@@ -1,30 +1,28 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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-
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- var _typeof3 = require("@babel/runtime/helpers/typeof");
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports.default = exports.PluginSourceConfigurationSchema = void 0;
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+ exports["default"] = exports.PluginSourceConfigurationSchema = void 0;
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  exports.isCJSPluginDefinition = isCJSPluginDefinition;
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  exports.isESMPluginDefinition = isESMPluginDefinition;
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  exports.isUMDPluginDefinition = isUMDPluginDefinition;
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  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
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- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
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+ var _interopRequireWildcard2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/interopRequireWildcard"));
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- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
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- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
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- var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
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+ var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/typeof"));
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  var _loadScript = _interopRequireDefault(require("load-script2"));
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@@ -36,10 +34,7 @@ var _ReExports = _interopRequireDefault(require("./ReExports"));
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  var _util = require("./util");
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- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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-
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@@ -69,7 +64,7 @@ function getGlobalObject() {
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- (typeof self === "undefined" ? "undefined" : (0, _typeof2.default)(self)) === 'object' && self.self === self && self || (typeof global === "undefined" ? "undefined" : (0, _typeof2.default)(global)) === 'object' && global.global === global && global || // @ts-ignore
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+ (typeof self === "undefined" ? "undefined" : (0, _typeof2["default"])(self)) === 'object' && self.self === self && self || (typeof global === "undefined" ? "undefined" : (0, _typeof2["default"])(global)) === 'object' && global.global === global && global || // @ts-ignore
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@@ -81,18 +76,18 @@ function isInWebWorker(globalObject) {
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  function PluginLoader() {
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  var pluginDefinitions = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : [];
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- (0, _createClass2.default)(PluginLoader, [{
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  var globalObject = getGlobalObject();
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- return (0, _loadScript.default)(scriptUrl);
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+ return (0, _loadScript["default"])(scriptUrl);
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@@ -115,9 +110,9 @@ var PluginLoader = /*#__PURE__*/function () {
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@@ -160,7 +155,7 @@ var PluginLoader = /*#__PURE__*/function () {
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@@ -215,9 +210,9 @@ var PluginLoader = /*#__PURE__*/function () {
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  while (1) {
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@@ -245,7 +240,7 @@ var PluginLoader = /*#__PURE__*/function () {
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@@ -421,8 +416,8 @@ var PluginLoader = /*#__PURE__*/function () {
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@@ -432,16 +427,16 @@ var PluginLoader = /*#__PURE__*/function () {
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@@ -487,4 +482,4 @@ var PluginLoader = /*#__PURE__*/function () {
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package/PluginManager.js CHANGED
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1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = void 0;
8
+ exports["default"] = void 0;
9
9
 
10
- var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
10
+ var _createForOfIteratorHelper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createForOfIteratorHelper"));
11
11
 
12
- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
12
+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
13
13
 
14
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
14
+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
15
15
 
16
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
16
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
17
17
 
18
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
18
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
19
19
 
20
20
  var _mobxStateTree = require("mobx-state-tree");
21
21
 
@@ -49,19 +49,13 @@ var _CorePlugin = _interopRequireDefault(require("./CorePlugin"));
49
49
 
50
50
  var _jexl = _interopRequireDefault(require("./util/jexl"));
51
51
 
52
- function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
53
-
54
- function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
55
-
56
- function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
57
-
58
52
  /** little helper class that keeps groups of callbacks that are
59
53
  then run in a specified order by group */
60
54
  var PhasedScheduler = /*#__PURE__*/function () {
61
55
  function PhasedScheduler() {
62
- (0, _classCallCheck2.default)(this, PhasedScheduler);
63
- (0, _defineProperty2.default)(this, "phaseCallbacks", new Map());
64
- (0, _defineProperty2.default)(this, "phaseOrder", []);
56
+ (0, _classCallCheck2["default"])(this, PhasedScheduler);
57
+ this.phaseCallbacks = new Map();
58
+ this.phaseOrder = [];
65
59
 
66
60
  for (var _len = arguments.length, phaseOrder = new Array(_len), _key = 0; _key < _len; _key++) {
67
61
  phaseOrder[_key] = arguments[_key];
@@ -70,7 +64,7 @@ var PhasedScheduler = /*#__PURE__*/function () {
70
64
  this.phaseOrder = phaseOrder;
71
65
  }
72
66
 
73
- (0, _createClass2.default)(PhasedScheduler, [{
67
+ (0, _createClass2["default"])(PhasedScheduler, [{
74
68
  key: "add",
75
69
  value: function add(phase, callback) {
76
70
  if (!this.phaseOrder.includes(phase)) {
@@ -108,11 +102,13 @@ var PhasedScheduler = /*#__PURE__*/function () {
108
102
  /** internal class that holds the info for a certain element type */
109
103
  var TypeRecord = /*#__PURE__*/function () {
110
104
  function TypeRecord(typeName, baseClass) {
111
- (0, _classCallCheck2.default)(this, TypeRecord);
112
- (0, _defineProperty2.default)(this, "registeredTypes", {});
105
+ (0, _classCallCheck2["default"])(this, TypeRecord);
106
+ this.typeName = typeName;
107
+ this.baseClass = baseClass;
108
+ this.registeredTypes = {};
113
109
  }
114
110
 
115
- (0, _createClass2.default)(TypeRecord, [{
111
+ (0, _createClass2["default"])(TypeRecord, [{
116
112
  key: "add",
117
113
  value: function add(name, t) {
118
114
  this.registeredTypes[name] = t;
@@ -147,35 +143,37 @@ var PluginManager = /*#__PURE__*/function () {
147
143
  var _this2 = this;
148
144
 
149
145
  var initialPlugins = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : [];
150
- (0, _classCallCheck2.default)(this, PluginManager);
151
- (0, _defineProperty2.default)(this, "plugins", []);
152
- (0, _defineProperty2.default)(this, "jexl", (0, _jexl.default)());
153
- (0, _defineProperty2.default)(this, "pluginMetadata", {});
154
- (0, _defineProperty2.default)(this, "runtimePluginDefinitions", []);
155
- (0, _defineProperty2.default)(this, "elementCreationSchedule", new PhasedScheduler('renderer', 'adapter', 'text search adapter', 'display', 'track', 'connection', 'view', 'widget', 'rpc method', 'internet account'));
156
- (0, _defineProperty2.default)(this, "rendererTypes", new TypeRecord('RendererType', _RendererType.default));
157
- (0, _defineProperty2.default)(this, "adapterTypes", new TypeRecord('AdapterType', _AdapterType.default));
158
- (0, _defineProperty2.default)(this, "textSearchAdapterTypes", new TypeRecord('TextSearchAdapterType', _TextSearchAdapterType.default));
159
- (0, _defineProperty2.default)(this, "trackTypes", new TypeRecord('TrackType', _TrackType.default));
160
- (0, _defineProperty2.default)(this, "displayTypes", new TypeRecord('DisplayType', _DisplayType.default));
161
- (0, _defineProperty2.default)(this, "connectionTypes", new TypeRecord('ConnectionType', _ConnectionType.default));
162
- (0, _defineProperty2.default)(this, "viewTypes", new TypeRecord('ViewType', _ViewType.default));
163
- (0, _defineProperty2.default)(this, "widgetTypes", new TypeRecord('WidgetType', _WidgetType.default));
164
- (0, _defineProperty2.default)(this, "rpcMethods", new TypeRecord('RpcMethodType', _RpcMethodType.default));
165
- (0, _defineProperty2.default)(this, "internetAccountTypes", new TypeRecord('InternetAccountType', _InternetAccountType.default));
166
- (0, _defineProperty2.default)(this, "configured", false);
167
- (0, _defineProperty2.default)(this, "rootModel", void 0);
168
- (0, _defineProperty2.default)(this, "extensionPoints", new Map());
169
- (0, _defineProperty2.default)(this, "jbrequireCache", new Map());
170
- (0, _defineProperty2.default)(this, "lib", _ReExports.default);
171
- (0, _defineProperty2.default)(this, "load", function (lib) {
146
+ (0, _classCallCheck2["default"])(this, PluginManager);
147
+ this.plugins = [];
148
+ this.jexl = (0, _jexl["default"])();
149
+ this.pluginMetadata = {};
150
+ this.runtimePluginDefinitions = [];
151
+ this.elementCreationSchedule = new PhasedScheduler('renderer', 'adapter', 'text search adapter', 'display', 'track', 'connection', 'view', 'widget', 'rpc method', 'internet account');
152
+ this.rendererTypes = new TypeRecord('RendererType', _RendererType["default"]);
153
+ this.adapterTypes = new TypeRecord('AdapterType', _AdapterType["default"]);
154
+ this.textSearchAdapterTypes = new TypeRecord('TextSearchAdapterType', _TextSearchAdapterType["default"]);
155
+ this.trackTypes = new TypeRecord('TrackType', _TrackType["default"]);
156
+ this.displayTypes = new TypeRecord('DisplayType', _DisplayType["default"]);
157
+ this.connectionTypes = new TypeRecord('ConnectionType', _ConnectionType["default"]);
158
+ this.viewTypes = new TypeRecord('ViewType', _ViewType["default"]);
159
+ this.widgetTypes = new TypeRecord('WidgetType', _WidgetType["default"]);
160
+ this.rpcMethods = new TypeRecord('RpcMethodType', _RpcMethodType["default"]);
161
+ this.internetAccountTypes = new TypeRecord('InternetAccountType', _InternetAccountType["default"]);
162
+ this.configured = false;
163
+ this.rootModel = void 0;
164
+ this.extensionPoints = new Map();
165
+ this.jbrequireCache = new Map();
166
+ this.lib = _ReExports["default"];
167
+
168
+ this.load = function (lib) {
172
169
  if (!_this2.jbrequireCache.has(lib)) {
173
170
  _this2.jbrequireCache.set(lib, lib(_this2));
174
171
  }
175
172
 
176
173
  return _this2.jbrequireCache.get(lib);
177
- });
178
- (0, _defineProperty2.default)(this, "jbrequire", function (lib // eslint-disable-next-line @typescript-eslint/no-explicit-any
174
+ };
175
+
176
+ this.jbrequire = function (lib // eslint-disable-next-line @typescript-eslint/no-explicit-any
179
177
  ) {
180
178
  if (typeof lib === 'string') {
181
179
  var pack = _this2.lib[lib];
@@ -191,15 +189,16 @@ var PluginManager = /*#__PURE__*/function () {
191
189
  return _this2.load(lib);
192
190
  }
193
191
 
194
- if (lib.default) {
195
- return _this2.jbrequire(lib.default);
192
+ if (lib["default"]) {
193
+ return _this2.jbrequire(lib["default"]);
196
194
  }
197
195
 
198
196
  throw new TypeError('lib passed to jbrequire must be either a string or a function');
199
- });
197
+ };
198
+
200
199
  // add the core plugin
201
200
  this.addPlugin({
202
- plugin: new _CorePlugin.default(),
201
+ plugin: new _CorePlugin["default"](),
203
202
  metadata: {
204
203
  isCore: true
205
204
  }
@@ -210,7 +209,7 @@ var PluginManager = /*#__PURE__*/function () {
210
209
  });
211
210
  }
212
211
 
213
- (0, _createClass2.default)(PluginManager, [{
212
+ (0, _createClass2["default"])(PluginManager, [{
214
213
  key: "pluginConfigurationSchemas",
215
214
  value: function pluginConfigurationSchemas() {
216
215
  var configurationSchemas = {};
@@ -228,8 +227,8 @@ var PluginManager = /*#__PURE__*/function () {
228
227
  throw new Error('JBrowse already configured, cannot add plugins');
229
228
  }
230
229
 
231
- var _ref = load instanceof _Plugin.default ? [load, {}] : [load.plugin, load.metadata],
232
- _ref2 = (0, _slicedToArray2.default)(_ref, 2),
230
+ var _ref = load instanceof _Plugin["default"] ? [load, {}] : [load.plugin, load.metadata],
231
+ _ref2 = (0, _slicedToArray2["default"])(_ref, 2),
233
232
  plugin = _ref2[0],
234
233
  _ref2$ = _ref2[1],
235
234
  metadata = _ref2$ === void 0 ? {} : _ref2$;
@@ -378,7 +377,7 @@ var PluginManager = /*#__PURE__*/function () {
378
377
  }, {
379
378
  key: "pluggableMstType",
380
379
  value: function pluggableMstType(typeGroup, fieldName) {
381
- var fallback = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : _mobxStateTree.types.maybe(_mobxStateTree.types.null);
380
+ var fallback = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : _mobxStateTree.types.maybe(_mobxStateTree.types["null"]);
382
381
  var pluggableTypes = this.getElementTypeRecord(typeGroup).all() // @ts-ignore
383
382
  .map(function (t) {
384
383
  return t[fieldName];
@@ -392,7 +391,7 @@ var PluginManager = /*#__PURE__*/function () {
392
391
  return fallback;
393
392
  }
394
393
 
395
- return _mobxStateTree.types.union.apply(_mobxStateTree.types, (0, _toConsumableArray2.default)(pluggableTypes));
394
+ return _mobxStateTree.types.union.apply(_mobxStateTree.types, (0, _toConsumableArray2["default"])(pluggableTypes));
396
395
  }
397
396
  /** get a MST type for the union of all specified pluggable config schemas */
398
397
 
@@ -411,7 +410,7 @@ var PluginManager = /*#__PURE__*/function () {
411
410
  pluggableTypes.push((0, _configuration.ConfigurationSchema)('Null', {}));
412
411
  }
413
412
 
414
- return _mobxStateTree.types.union.apply(_mobxStateTree.types, (0, _toConsumableArray2.default)(pluggableTypes));
413
+ return _mobxStateTree.types.union.apply(_mobxStateTree.types, (0, _toConsumableArray2["default"])(pluggableTypes));
415
414
  }
416
415
  }, {
417
416
  key: "getRendererType",
@@ -569,7 +568,7 @@ var PluginManager = /*#__PURE__*/function () {
569
568
  var accumulator = extendee;
570
569
 
571
570
  if (callbacks) {
572
- var _iterator = _createForOfIteratorHelper(callbacks),
571
+ var _iterator = (0, _createForOfIteratorHelper2["default"])(callbacks),
573
572
  _step;
574
573
 
575
574
  try {
@@ -595,4 +594,4 @@ var PluginManager = /*#__PURE__*/function () {
595
594
  return PluginManager;
596
595
  }();
597
596
 
598
- exports.default = PluginManager;
597
+ exports["default"] = PluginManager;
@@ -1,13 +1,13 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = void 0;
8
+ exports["default"] = void 0;
9
9
 
10
10
  var _modules = _interopRequireDefault(require("./modules"));
11
11
 
12
- var _default = _modules.default;
13
- exports.default = _default;
12
+ var _default = _modules["default"];
13
+ exports["default"] = _default;
package/ReExports/list.js CHANGED
@@ -3,6 +3,6 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports.default = void 0;
6
+ exports["default"] = void 0;
7
7
  var _default = ['mobx', 'mobx-state-tree', 'react', 'react-dom', 'mobx-react', 'prop-types', '@material-ui/core', '@material-ui/core/SvgIcon', '@material-ui/core/utils', '@material-ui/lab', '@mui/x-data-grid', '@jbrowse/core/Plugin', '@jbrowse/core/pluggableElementTypes', '@jbrowse/core/pluggableElementTypes/ViewType', '@jbrowse/core/pluggableElementTypes/AdapterType', '@jbrowse/core/pluggableElementTypes/DisplayType', '@jbrowse/core/pluggableElementTypes/TrackType', '@jbrowse/core/pluggableElementTypes/WidgetType', '@jbrowse/core/pluggableElementTypes/models', '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType', '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType', '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType', '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType', '@jbrowse/core/pluggableElementTypes/renderers/RendererType', '@jbrowse/core/configuration', '@jbrowse/core/util/types/mst', '@jbrowse/core/ui', '@jbrowse/core/util', '@jbrowse/core/util/color', '@jbrowse/core/util/layouts', '@jbrowse/core/util/tracks', '@jbrowse/core/util/Base1DViewModel', '@jbrowse/core/util/io', '@jbrowse/core/util/mst-reflection', '@jbrowse/core/util/rxjs', '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail', '@jbrowse/core/data_adapters/BaseAdapter'];
8
- exports.default = _default;
8
+ exports["default"] = _default;
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -8,115 +8,115 @@ Object.defineProperty(exports, "__esModule", {
8
8
  Object.defineProperty(exports, "amber", {
9
9
  enumerable: true,
10
10
  get: function get() {
11
- return _amber.default;
11
+ return _amber["default"];
12
12
  }
13
13
  });
14
14
  Object.defineProperty(exports, "blue", {
15
15
  enumerable: true,
16
16
  get: function get() {
17
- return _blue.default;
17
+ return _blue["default"];
18
18
  }
19
19
  });
20
20
  Object.defineProperty(exports, "blueGrey", {
21
21
  enumerable: true,
22
22
  get: function get() {
23
- return _blueGrey.default;
23
+ return _blueGrey["default"];
24
24
  }
25
25
  });
26
26
  Object.defineProperty(exports, "brown", {
27
27
  enumerable: true,
28
28
  get: function get() {
29
- return _brown.default;
29
+ return _brown["default"];
30
30
  }
31
31
  });
32
32
  Object.defineProperty(exports, "cyan", {
33
33
  enumerable: true,
34
34
  get: function get() {
35
- return _cyan.default;
35
+ return _cyan["default"];
36
36
  }
37
37
  });
38
38
  Object.defineProperty(exports, "deepOrange", {
39
39
  enumerable: true,
40
40
  get: function get() {
41
- return _deepOrange.default;
41
+ return _deepOrange["default"];
42
42
  }
43
43
  });
44
44
  Object.defineProperty(exports, "deepPurple", {
45
45
  enumerable: true,
46
46
  get: function get() {
47
- return _deepPurple.default;
47
+ return _deepPurple["default"];
48
48
  }
49
49
  });
50
50
  Object.defineProperty(exports, "green", {
51
51
  enumerable: true,
52
52
  get: function get() {
53
- return _green.default;
53
+ return _green["default"];
54
54
  }
55
55
  });
56
56
  Object.defineProperty(exports, "grey", {
57
57
  enumerable: true,
58
58
  get: function get() {
59
- return _grey.default;
59
+ return _grey["default"];
60
60
  }
61
61
  });
62
62
  Object.defineProperty(exports, "indigo", {
63
63
  enumerable: true,
64
64
  get: function get() {
65
- return _indigo.default;
65
+ return _indigo["default"];
66
66
  }
67
67
  });
68
68
  Object.defineProperty(exports, "lightBlue", {
69
69
  enumerable: true,
70
70
  get: function get() {
71
- return _lightBlue.default;
71
+ return _lightBlue["default"];
72
72
  }
73
73
  });
74
74
  Object.defineProperty(exports, "lightGreen", {
75
75
  enumerable: true,
76
76
  get: function get() {
77
- return _lightGreen.default;
77
+ return _lightGreen["default"];
78
78
  }
79
79
  });
80
80
  Object.defineProperty(exports, "lime", {
81
81
  enumerable: true,
82
82
  get: function get() {
83
- return _lime.default;
83
+ return _lime["default"];
84
84
  }
85
85
  });
86
86
  Object.defineProperty(exports, "orange", {
87
87
  enumerable: true,
88
88
  get: function get() {
89
- return _orange.default;
89
+ return _orange["default"];
90
90
  }
91
91
  });
92
92
  Object.defineProperty(exports, "pink", {
93
93
  enumerable: true,
94
94
  get: function get() {
95
- return _pink.default;
95
+ return _pink["default"];
96
96
  }
97
97
  });
98
98
  Object.defineProperty(exports, "purple", {
99
99
  enumerable: true,
100
100
  get: function get() {
101
- return _purple.default;
101
+ return _purple["default"];
102
102
  }
103
103
  });
104
104
  Object.defineProperty(exports, "red", {
105
105
  enumerable: true,
106
106
  get: function get() {
107
- return _red.default;
107
+ return _red["default"];
108
108
  }
109
109
  });
110
110
  Object.defineProperty(exports, "teal", {
111
111
  enumerable: true,
112
112
  get: function get() {
113
- return _teal.default;
113
+ return _teal["default"];
114
114
  }
115
115
  });
116
116
  Object.defineProperty(exports, "yellow", {
117
117
  enumerable: true,
118
118
  get: function get() {
119
- return _yellow.default;
119
+ return _yellow["default"];
120
120
  }
121
121
  });
122
122