@jbrowse/bandage-core 11.4.0 → 11.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (142) hide show
  1. package/dist/alleleProjection/projectAlleles.js +1 -1
  2. package/dist/bubbles/bubbleHalos.js +9 -6
  3. package/dist/bubbles/classifyBubble.js +8 -5
  4. package/dist/bubbles/popBubble.js +3 -3
  5. package/dist/bubbles/superbubbles.js +11 -11
  6. package/dist/chunks/{chunk-FFHJGWDK.js → chunk-2C5SATRZ.js} +5 -5
  7. package/dist/chunks/{chunk-4XWZNPQ2.js → chunk-2JL2JVZ2.js} +1 -1
  8. package/dist/chunks/{chunk-BZFOFC4D.js → chunk-2VMKQKVO.js} +17 -7
  9. package/dist/chunks/{chunk-GM7M25NW.js → chunk-2XEAITWM.js} +15 -5
  10. package/dist/chunks/{chunk-7BTO7MZS.js → chunk-376YFQOY.js} +2 -2
  11. package/dist/chunks/{chunk-EFD753MS.js → chunk-3FWNQNF7.js} +1 -1
  12. package/dist/chunks/{chunk-B5X2RLJG.js → chunk-3YBP46PB.js} +27 -2
  13. package/dist/chunks/{chunk-EJRJAAN7.js → chunk-4DMSPNYV.js} +47 -27
  14. package/dist/chunks/{chunk-I4BYUNJN.js → chunk-4WXFQOYV.js} +5 -5
  15. package/dist/chunks/{chunk-OMUPUB4J.js → chunk-56L6R6D2.js} +2 -2
  16. package/dist/chunks/{chunk-C44YRP5F.js → chunk-5OJZV6YT.js} +3 -2
  17. package/dist/chunks/{chunk-234NFZS4.js → chunk-5ORP7EFJ.js} +1 -1
  18. package/dist/chunks/{chunk-TUQKGAK3.js → chunk-5WB7O7IT.js} +4 -4
  19. package/dist/chunks/{chunk-3VCKBSML.js → chunk-6YRSOL4K.js} +2 -2
  20. package/dist/chunks/{chunk-REOWLPH4.js → chunk-7OTWJQGA.js} +13 -13
  21. package/dist/chunks/{chunk-77EGQQJU.js → chunk-BFUS3ENH.js} +2 -2
  22. package/dist/chunks/{chunk-TGUFT6KK.js → chunk-BLUEFYIR.js} +4 -1
  23. package/dist/chunks/{chunk-JQ52XYD2.js → chunk-BVWMVWLJ.js} +12 -12
  24. package/dist/chunks/{chunk-3GP3KT5L.js → chunk-BW2NMXRV.js} +5 -5
  25. package/dist/chunks/{chunk-2Q22S52W.js → chunk-C6E6HXP5.js} +8 -8
  26. package/dist/chunks/{chunk-5I3K4R2G.js → chunk-CFXXFHRK.js} +2 -1
  27. package/dist/chunks/{chunk-JMABOQWL.js → chunk-CO6RGQAD.js} +1 -6
  28. package/dist/chunks/{chunk-M75QPZNJ.js → chunk-D3E7AXBB.js} +68 -26
  29. package/dist/chunks/{chunk-CGMSKIEO.js → chunk-DV5B5UU7.js} +55 -8
  30. package/dist/chunks/{chunk-G6UIYQZR.js → chunk-EQDQ7P4Y.js} +3 -2
  31. package/dist/chunks/{chunk-FRTYQQDI.js → chunk-EVXXFMZ7.js} +9 -9
  32. package/dist/chunks/{chunk-BXLLMWC3.js → chunk-F3KQQDKP.js} +1 -1
  33. package/dist/chunks/{chunk-6EOB6ANX.js → chunk-GZ36HNPJ.js} +1 -1
  34. package/dist/chunks/{chunk-3HGYGISG.js → chunk-HV35LDYH.js} +3 -3
  35. package/dist/chunks/{chunk-XSF4RQRP.js → chunk-JGHZ3N34.js} +22 -15
  36. package/dist/chunks/{chunk-D4ZFRBB4.js → chunk-JGQQAUVL.js} +3 -3
  37. package/dist/chunks/{chunk-PSCSZSVK.js → chunk-KA4F3N55.js} +4 -4
  38. package/dist/chunks/{chunk-SOMZGDVS.js → chunk-KJDERUQF.js} +1 -1
  39. package/dist/chunks/{chunk-E4ZM4OOJ.js → chunk-KZMSSPS6.js} +2 -2
  40. package/dist/chunks/{chunk-JDZ5GTZT.js → chunk-MEVTV4FI.js} +1 -1
  41. package/dist/chunks/{chunk-PNMJFFNB.js → chunk-MHZTTLBU.js} +1 -1
  42. package/dist/chunks/{chunk-VIQL7GZ4.js → chunk-MXLYBDOX.js} +14 -13
  43. package/dist/chunks/{chunk-3LZ334X4.js → chunk-NXBW6KY6.js} +6 -7
  44. package/dist/chunks/{chunk-7O7EGTYG.js → chunk-OUM54ZSQ.js} +2 -2
  45. package/dist/chunks/{chunk-WA5WNP6V.js → chunk-OYCQVJYY.js} +1 -1
  46. package/dist/chunks/{chunk-TZLEHZVC.js → chunk-P5PBJONQ.js} +1 -1
  47. package/dist/chunks/chunk-PQIFYQVI.js +21 -0
  48. package/dist/chunks/{chunk-6VVGFQ7S.js → chunk-QCOVHLJO.js} +1 -1
  49. package/dist/chunks/{chunk-TEXAKEJX.js → chunk-QD35GH4C.js} +3 -3
  50. package/dist/chunks/{chunk-CE6ZIKJX.js → chunk-RLCYVZ4B.js} +1 -1
  51. package/dist/chunks/{chunk-6YJESZND.js → chunk-ROLACYCO.js} +20 -20
  52. package/dist/chunks/{chunk-A7H753BA.js → chunk-SDI6BVG7.js} +5 -6
  53. package/dist/chunks/{chunk-A4JDEUAI.js → chunk-SNF2MIEF.js} +1 -1
  54. package/dist/chunks/{chunk-NMWQUFPF.js → chunk-SVVFWTG4.js} +2 -2
  55. package/dist/chunks/{chunk-PFRQBCGC.js → chunk-T3H5ELLA.js} +4 -4
  56. package/dist/chunks/{chunk-QM7KEWWT.js → chunk-TXTSE44S.js} +1 -1
  57. package/dist/chunks/{chunk-UBQSRCWR.js → chunk-VACK24HF.js} +43 -3
  58. package/dist/chunks/{chunk-HSVFCA2J.js → chunk-VO6FKNZE.js} +1 -1
  59. package/dist/chunks/{chunk-B5ARSBOH.js → chunk-W2YAW36J.js} +8 -7
  60. package/dist/chunks/{chunk-TJOOHTJ6.js → chunk-WI6SUU5B.js} +2 -2
  61. package/dist/chunks/{chunk-GJU6BJJA.js → chunk-XR2HMGAS.js} +1 -1
  62. package/dist/chunks/{chunk-N7G5ROIV.js → chunk-XXOBCANT.js} +26 -12
  63. package/dist/chunks/{chunk-G3I4TCEZ.js → chunk-YEYQFNFQ.js} +1 -1
  64. package/dist/chunks/{chunk-UFUSPK2A.js → chunk-YYIU7P73.js} +4 -1
  65. package/dist/chunks/{chunk-CRCD3ODN.js → chunk-ZANALBSX.js} +11 -3
  66. package/dist/cli/figure.js +52 -47
  67. package/dist/cli/fold.js +12 -12
  68. package/dist/deletionEdges.js +5 -2
  69. package/dist/facetGrid.js +2 -2
  70. package/dist/figure.js +36 -36
  71. package/dist/figureData.js +38 -38
  72. package/dist/figureScene.js +26 -26
  73. package/dist/figureSettings.js +12 -12
  74. package/dist/foldVariants.js +2 -2
  75. package/dist/gaf/parseGaf.js +1 -1
  76. package/dist/gbzCut.js +4 -4
  77. package/dist/gbzWindow.js +3 -3
  78. package/dist/genes/backboneGenes.js +4 -4
  79. package/dist/genes/geneFiles.js +1 -1
  80. package/dist/genes/genePins.js +3 -3
  81. package/dist/gfa/gfaConverter.js +4 -4
  82. package/dist/gfa/graphTables.js +2 -2
  83. package/dist/gfa-core/gfaParser.js +1 -1
  84. package/dist/gfa-core/index.js +1 -1
  85. package/dist/graphLabels.js +7 -4
  86. package/dist/index.js +96 -90
  87. package/dist/labelLayout.js +11 -8
  88. package/dist/layout/anchoredLayout.js +1 -1
  89. package/dist/layout/forceCache.js +12 -12
  90. package/dist/layout/mergeRuns.js +2 -2
  91. package/dist/layout/placeOffReference.js +1 -1
  92. package/dist/layout/sampleRowLayout.js +2 -2
  93. package/dist/layout/trimToWindow.js +2 -2
  94. package/dist/layout/tubeMapLayout.js +14 -14
  95. package/dist/layout/walkRowDraw.js +12 -12
  96. package/dist/layout/walkRowLayout.js +7 -7
  97. package/dist/layout/walkRowLinks.js +1 -1
  98. package/dist/layout/walkRowRuns.js +4 -4
  99. package/dist/layout/walkRows.js +5 -5
  100. package/dist/layout/walkStrip.js +17 -17
  101. package/dist/layoutEngines.js +1 -1
  102. package/dist/layoutModes.js +17 -17
  103. package/dist/locus.js +8 -0
  104. package/dist/nodeWidths.js +5 -3
  105. package/dist/pansn.js +1 -1
  106. package/dist/pathAnchoring.js +4 -2
  107. package/dist/pathColors.js +8 -8
  108. package/dist/pipeline.js +11 -11
  109. package/dist/reference.js +2 -2
  110. package/dist/referenceStrip.js +12 -12
  111. package/dist/renderer/Canvas2DRenderer.js +1 -1
  112. package/dist/renderer/GeometryBuilder.js +15 -13
  113. package/dist/tubeMap/axis.js +8 -5
  114. package/dist/tubeMap/bundle.js +15 -15
  115. package/dist/tubeMap/coarsen.js +15 -15
  116. package/dist/tubeMap/deviations.js +18 -18
  117. package/dist/tubeMap/draw.js +10 -8
  118. package/dist/tubeMap/genes.js +9 -6
  119. package/dist/tubeMap/nodeColors.js +12 -12
  120. package/dist/tubeMap/reads.js +4 -4
  121. package/dist/types/figureData.d.ts +12 -0
  122. package/dist/types/gaf/parseGaf.d.ts +1 -1
  123. package/dist/types/gfa/graphTables.d.ts +3 -2
  124. package/dist/types/index.d.ts +1 -0
  125. package/dist/types/locus.d.ts +10 -0
  126. package/dist/types/nodeWidths.d.ts +2 -1
  127. package/dist/types/pathAnchoring.d.ts +2 -0
  128. package/dist/types/renderer/Canvas2DRenderer.d.ts +2 -0
  129. package/dist/types/renderer/GeometryBuilder.d.ts +1 -0
  130. package/dist/types/tubeMap/reads.d.ts +0 -1
  131. package/dist/types/util/geometry.d.ts +7 -1
  132. package/dist/types/version.d.ts +1 -1
  133. package/dist/util/SpatialIndex.js +7 -4
  134. package/dist/util/edgeCurves.js +6 -3
  135. package/dist/util/geometry.js +1 -1
  136. package/dist/util/hitDetection.js +8 -5
  137. package/dist/version.js +1 -1
  138. package/dist/viewport.js +12 -12
  139. package/dist/walkEncoding.js +12 -12
  140. package/dist/walkHighlight.js +13 -13
  141. package/dist/walkKey.js +8 -5
  142. package/package.json +1 -1
@@ -8,21 +8,23 @@ import {
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  tubeMapMismatchAt,
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  tubeMapPicture,
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  tubeMapTrackAt
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- } from "../chunks/chunk-3HGYGISG.js";
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+ } from "../chunks/chunk-HV35LDYH.js";
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  import "../chunks/chunk-BX4AUMZE.js";
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  import "../chunks/chunk-MYDHU2UV.js";
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- import "../chunks/chunk-A7H753BA.js";
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- import "../chunks/chunk-C44YRP5F.js";
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- import "../chunks/chunk-JDZ5GTZT.js";
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- import "../chunks/chunk-M75QPZNJ.js";
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- import "../chunks/chunk-B5ARSBOH.js";
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- import "../chunks/chunk-B5X2RLJG.js";
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+ import "../chunks/chunk-SDI6BVG7.js";
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+ import "../chunks/chunk-5OJZV6YT.js";
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+ import "../chunks/chunk-MEVTV4FI.js";
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+ import "../chunks/chunk-D3E7AXBB.js";
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+ import "../chunks/chunk-W2YAW36J.js";
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  import "../chunks/chunk-EIY2SKD3.js";
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+ import "../chunks/chunk-3YBP46PB.js";
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+ import "../chunks/chunk-VACK24HF.js";
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+ import "../chunks/chunk-CPMHA4W5.js";
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  import "../chunks/chunk-ZPZ7GNBT.js";
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  import "../chunks/chunk-BSOZW3FC.js";
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  import "../chunks/chunk-RJWPJCIB.js";
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  import "../chunks/chunk-HOAIOEI7.js";
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- import "../chunks/chunk-4XWZNPQ2.js";
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+ import "../chunks/chunk-2JL2JVZ2.js";
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  export {
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  drawTubeMap,
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  drawTubeMapHighlight,
@@ -3,18 +3,21 @@ import {
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  drawTubeMapGenes,
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  tubeMapGeneRows,
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  tubeMapGenes
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- } from "../chunks/chunk-6EOB6ANX.js";
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- import "../chunks/chunk-HSVFCA2J.js";
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- import "../chunks/chunk-PFRQBCGC.js";
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+ } from "../chunks/chunk-GZ36HNPJ.js";
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+ import "../chunks/chunk-VO6FKNZE.js";
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+ import "../chunks/chunk-T3H5ELLA.js";
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  import "../chunks/chunk-HMXCN6PG.js";
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  import "../chunks/chunk-AB35TJST.js";
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- import "../chunks/chunk-BZFOFC4D.js";
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- import "../chunks/chunk-CGMSKIEO.js";
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- import "../chunks/chunk-UBQSRCWR.js";
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+ import "../chunks/chunk-2VMKQKVO.js";
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+ import "../chunks/chunk-DV5B5UU7.js";
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+ import "../chunks/chunk-3YBP46PB.js";
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+ import "../chunks/chunk-VACK24HF.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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+ import "../chunks/chunk-ZPZ7GNBT.js";
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  import "../chunks/chunk-BSOZW3FC.js";
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  import "../chunks/chunk-RJWPJCIB.js";
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  import "../chunks/chunk-HOAIOEI7.js";
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+ import "../chunks/chunk-2JL2JVZ2.js";
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  export {
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  GENE_ROW_PX,
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  drawTubeMapGenes,
@@ -1,26 +1,26 @@
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  import {
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  tubeMapNodeColors
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- } from "../chunks/chunk-G3I4TCEZ.js";
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- import "../chunks/chunk-XSF4RQRP.js";
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+ } from "../chunks/chunk-YEYQFNFQ.js";
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+ import "../chunks/chunk-JGHZ3N34.js";
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  import "../chunks/chunk-G2FD7S3C.js";
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  import "../chunks/chunk-GQZVR5DW.js";
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- import "../chunks/chunk-WA5WNP6V.js";
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- import "../chunks/chunk-3GP3KT5L.js";
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- import "../chunks/chunk-CRCD3ODN.js";
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- import "../chunks/chunk-B5X2RLJG.js";
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+ import "../chunks/chunk-OYCQVJYY.js";
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+ import "../chunks/chunk-BW2NMXRV.js";
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+ import "../chunks/chunk-ZANALBSX.js";
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  import "../chunks/chunk-VX656OAZ.js";
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- import "../chunks/chunk-ZPZ7GNBT.js";
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- import "../chunks/chunk-PFRQBCGC.js";
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+ import "../chunks/chunk-T3H5ELLA.js";
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  import "../chunks/chunk-HMXCN6PG.js";
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  import "../chunks/chunk-AB35TJST.js";
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- import "../chunks/chunk-BZFOFC4D.js";
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- import "../chunks/chunk-CGMSKIEO.js";
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- import "../chunks/chunk-UBQSRCWR.js";
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+ import "../chunks/chunk-2VMKQKVO.js";
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+ import "../chunks/chunk-DV5B5UU7.js";
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+ import "../chunks/chunk-3YBP46PB.js";
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+ import "../chunks/chunk-VACK24HF.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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+ import "../chunks/chunk-ZPZ7GNBT.js";
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  import "../chunks/chunk-BSOZW3FC.js";
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  import "../chunks/chunk-RJWPJCIB.js";
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  import "../chunks/chunk-HOAIOEI7.js";
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- import "../chunks/chunk-4XWZNPQ2.js";
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+ import "../chunks/chunk-2JL2JVZ2.js";
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  export {
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  tubeMapNodeColors
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  };
@@ -1,16 +1,16 @@
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  import {
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  FORWARD_READ_COLORS,
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  REVERSE_READ_COLORS,
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- canonicalStrand,
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  readColor,
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  stepName,
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  tubeMapReads
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- } from "../chunks/chunk-A7H753BA.js";
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- import "../chunks/chunk-C44YRP5F.js";
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+ } from "../chunks/chunk-SDI6BVG7.js";
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+ import "../chunks/chunk-5OJZV6YT.js";
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+ import "../chunks/chunk-VACK24HF.js";
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+ import "../chunks/chunk-CPMHA4W5.js";
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  export {
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  FORWARD_READ_COLORS,
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  REVERSE_READ_COLORS,
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- canonicalStrand,
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  readColor,
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  stepName,
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  tubeMapReads
@@ -77,6 +77,11 @@ export declare function figureData(graph: Graph, layout: LayoutResult, o?: Figur
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  referenceAxis: boolean;
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  colorScheme: import("./colorSchemes.js").ResolvedColorScheme;
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  referenceName: string | null;
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+ referenceRamp: {
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+ start: number;
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+ end: number;
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+ } | null;
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+ deletions: number;
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  };
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  panels: {
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  panel: string[];
@@ -96,6 +101,7 @@ export declare function figureData(graph: Graph, layout: LayoutResult, o?: Figur
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  length: number[];
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  depth: number[];
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  backbone: boolean[];
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+ referenceVisits: number[];
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  };
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  rowLabels: {
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  label: string[];
@@ -128,6 +134,11 @@ export declare function gfaFigureData(text: string, name: string, spec?: GfaFigu
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  referenceAxis: boolean;
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  colorScheme: import("./colorSchemes.js").ResolvedColorScheme;
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  referenceName: string | null;
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+ referenceRamp: {
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+ start: number;
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+ end: number;
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+ } | null;
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+ deletions: number;
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  };
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  panels: {
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  panel: string[];
@@ -147,6 +158,7 @@ export declare function gfaFigureData(text: string, name: string, spec?: GfaFigu
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  length: number[];
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  depth: number[];
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  backbone: boolean[];
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+ referenceVisits: number[];
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  };
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  rowLabels: {
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  label: string[];
@@ -19,7 +19,7 @@ export interface GafRecord {
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  cs?: string;
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  }
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  export declare function parseGafPath(column: string): GafStep[] | undefined;
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- export declare function parseGafLine(line: string): GafRecord | undefined;
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+ export declare function parseGafLine(text: string): GafRecord | undefined;
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  export declare function parseGaf(text: string): GafRecord[];
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  export type CsOp = {
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@@ -38,9 +38,10 @@ export declare function tablePath(w: GraphTables['walks'], p: number): Omit<Grap
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  };
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  /**
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  * Each segment's Graph node id: its name and its one drawn orientation, first
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- * claimed by a link and else by a walk
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+ * claimed by a link and else by a walk. Counts each segment's walk steps into
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+ * `traversals` when given one.
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  */
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- export declare function tableNodeIds({ nodes: n, links: l, walks: w }: GraphTables): string[];
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+ export declare function tableNodeIds({ nodes: n, links: l, walks: w }: GraphTables, traversals?: Int32Array): string[];
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  /**
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  * The Graph `convertGFAToGraph` builds from `graphTablesGFA(tables)`, deep
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  * equal, built by index: a step costs a few array reads and its visit, where
@@ -56,6 +56,7 @@ export { genesFromBed, genesFromGff3Lines, genesFromText, mergeOverlappingByName
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  export { backboneGenes } from './genes/backboneGenes.js';
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  export type { BackboneGenes, GeneSource, IndexedGeneFile, } from './genes/backboneGenes.js';
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  export { HPRC_GBZ, cutGbzRegion, openGbz, parseRegion } from './gbzCut.js';
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+ export { formatLocus, parseLocus } from './locus.js';
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  export type { GbzSource } from './gbzCut.js';
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  export { version } from './version.js';
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  export type { FigureOptions } from './figure.js';
@@ -0,0 +1,10 @@
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+ export declare function parseLocus(text: string): {
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+ refName: string;
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+ start: number;
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+ end: number;
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+ } | undefined;
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+ export declare function formatLocus(r: {
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+ refName: string;
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+ start: number;
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+ end: number;
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+ }): string;
@@ -13,4 +13,5 @@ export type NodeWidth = (typeof NODE_WIDTHS)[number]['value'];
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  export declare function meanDepth(graph: Graph): number;
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  export declare function nodeWidthPx(node: GraphNode, contigThickness: number, nodeWidth: NodeWidth, mean: number): number;
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  export declare function maxNodeWidthPx(contigThickness: number, nodeWidth: NodeWidth): number;
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- export declare function nodeInk(graph: Graph | undefined, nodeById: ReadonlyMap<string, GraphNode> | undefined, contigThickness: number, nodeWidth: NodeWidth): NodeInk;
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+ export declare function walkLaneWidthPx(width: number, lanes: number): number;
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+ export declare function nodeInk(graph: Graph | undefined, nodeById: ReadonlyMap<string, GraphNode> | undefined, contigThickness: number, nodeWidth: NodeWidth, lanes?: number): NodeInk;
@@ -1,3 +1,4 @@
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+ import type { AnchoredNode } from './anchoredNodes.js';
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  import type { PathVisits } from './pathVisits.js';
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  import type { Graph, PathOrigin } from './types.js';
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  export declare function pathOrigin(pathName: string): {
@@ -23,3 +24,4 @@ export declare function trimOrigins(graph: Graph, kept: Map<string, {
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  first: number;
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  nodeIds: string[];
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  }>): PathOrigin[] | undefined;
27
+ export declare function referenceVisitStarts(graph: Graph): (node: AnchoredNode) => number[];
@@ -8,6 +8,7 @@ export declare class Canvas2DRenderer implements Renderer {
8
8
  private highlightedEdge;
9
9
  private highlightFactor;
10
10
  private fit;
11
+ private painted;
11
12
  constructor(canvas: HTMLCanvasElement);
12
13
  setErrorHandler(_handler: (error: Error) => void): void;
13
14
  releaseOffscreenTargets(): void;
@@ -18,6 +19,7 @@ export declare class Canvas2DRenderer implements Renderer {
18
19
  updateTransform(transform: TransformUniform): void;
19
20
  private fitted;
20
21
  render(clearColor: [number, number, number, number]): void;
22
+ private paintedGroups;
21
23
  renderHighlights(): void;
22
24
  private edgeRun;
23
25
  private liftedStrokes;
@@ -42,6 +42,7 @@ export interface ReferenceRamp {
42
42
  span: number;
43
43
  midpoints: Map<string, number>;
44
44
  }
45
+ export declare function rampFraction(node: GraphNode, ramp: ReferenceRamp): number | undefined;
45
46
  export interface ColorSchemeRange {
46
47
  minDepth: number;
47
48
  maxDepth: number;
@@ -1,7 +1,6 @@
1
1
  import type { GafRecord } from '../gaf/parseGaf.js';
2
2
  import type { Graph, GraphNode } from '../types.js';
3
3
  import type { InputTrack } from '@jbrowse/tubemap-core';
4
- export declare function canonicalStrand(node: GraphNode): "+" | "-";
5
4
  export declare function stepName(node: GraphNode, strand: '+' | '-'): string;
6
5
  export declare function tubeMapReads(graph: Graph, records: readonly GafRecord[], firstId: number): InputTrack[];
7
6
  export declare const FORWARD_READ_COLORS: string[];
@@ -25,7 +25,13 @@ export declare function curveBounds(curves: BezierCurve[]): {
25
25
  maxX: number;
26
26
  maxY: number;
27
27
  };
28
- export declare function dashCurves(curves: BezierCurve[], dashWorld: number): BezierCurve[][];
28
+ export interface Bounds {
29
+ minX: number;
30
+ minY: number;
31
+ maxX: number;
32
+ maxY: number;
33
+ }
34
+ export declare function dashCurves(curves: BezierCurve[], dashWorld: number, yToX?: number, bounds?: Bounds): BezierCurve[][];
29
35
  export declare function translateCurves(curves: BezierCurve[], dx: number, dy: number): BezierCurve[];
30
36
  type Side = 'start' | 'end';
31
37
  export interface EdgeSides {
@@ -1 +1 @@
1
- export declare const version = "11.4.0";
1
+ export declare const version = "11.6.1";
@@ -1,15 +1,18 @@
1
1
  import {
2
2
  EdgeSpatialIndex,
3
3
  SpatialIndex
4
- } from "../chunks/chunk-3VCKBSML.js";
5
- import "../chunks/chunk-WA5WNP6V.js";
4
+ } from "../chunks/chunk-6YRSOL4K.js";
5
+ import "../chunks/chunk-OYCQVJYY.js";
6
6
  import "../chunks/chunk-HMXCN6PG.js";
7
- import "../chunks/chunk-CGMSKIEO.js";
8
- import "../chunks/chunk-UBQSRCWR.js";
7
+ import "../chunks/chunk-DV5B5UU7.js";
8
+ import "../chunks/chunk-3YBP46PB.js";
9
+ import "../chunks/chunk-VACK24HF.js";
9
10
  import "../chunks/chunk-CPMHA4W5.js";
11
+ import "../chunks/chunk-ZPZ7GNBT.js";
10
12
  import "../chunks/chunk-BSOZW3FC.js";
11
13
  import "../chunks/chunk-RJWPJCIB.js";
12
14
  import "../chunks/chunk-HOAIOEI7.js";
15
+ import "../chunks/chunk-2JL2JVZ2.js";
13
16
  export {
14
17
  EdgeSpatialIndex,
15
18
  SpatialIndex
@@ -1,13 +1,16 @@
1
1
  import {
2
2
  baseEdgeCurves
3
- } from "../chunks/chunk-WA5WNP6V.js";
3
+ } from "../chunks/chunk-OYCQVJYY.js";
4
4
  import "../chunks/chunk-HMXCN6PG.js";
5
- import "../chunks/chunk-CGMSKIEO.js";
6
- import "../chunks/chunk-UBQSRCWR.js";
5
+ import "../chunks/chunk-DV5B5UU7.js";
6
+ import "../chunks/chunk-3YBP46PB.js";
7
+ import "../chunks/chunk-VACK24HF.js";
7
8
  import "../chunks/chunk-CPMHA4W5.js";
9
+ import "../chunks/chunk-ZPZ7GNBT.js";
8
10
  import "../chunks/chunk-BSOZW3FC.js";
9
11
  import "../chunks/chunk-RJWPJCIB.js";
10
12
  import "../chunks/chunk-HOAIOEI7.js";
13
+ import "../chunks/chunk-2JL2JVZ2.js";
11
14
  export {
12
15
  baseEdgeCurves
13
16
  };
@@ -17,7 +17,7 @@ import {
17
17
  svgPath,
18
18
  translateCurves,
19
19
  yToXOf
20
- } from "../chunks/chunk-UBQSRCWR.js";
20
+ } from "../chunks/chunk-VACK24HF.js";
21
21
  import "../chunks/chunk-CPMHA4W5.js";
22
22
  export {
23
23
  PATH_RIBBON_SPACING_PX,
@@ -4,16 +4,19 @@ import {
4
4
  findHoveredEdge,
5
5
  findHoveredNode,
6
6
  nodesUnderBox
7
- } from "../chunks/chunk-OMUPUB4J.js";
8
- import "../chunks/chunk-3VCKBSML.js";
9
- import "../chunks/chunk-WA5WNP6V.js";
7
+ } from "../chunks/chunk-56L6R6D2.js";
8
+ import "../chunks/chunk-6YRSOL4K.js";
9
+ import "../chunks/chunk-OYCQVJYY.js";
10
10
  import "../chunks/chunk-HMXCN6PG.js";
11
- import "../chunks/chunk-CGMSKIEO.js";
12
- import "../chunks/chunk-UBQSRCWR.js";
11
+ import "../chunks/chunk-DV5B5UU7.js";
12
+ import "../chunks/chunk-3YBP46PB.js";
13
+ import "../chunks/chunk-VACK24HF.js";
13
14
  import "../chunks/chunk-CPMHA4W5.js";
15
+ import "../chunks/chunk-ZPZ7GNBT.js";
14
16
  import "../chunks/chunk-BSOZW3FC.js";
15
17
  import "../chunks/chunk-RJWPJCIB.js";
16
18
  import "../chunks/chunk-HOAIOEI7.js";
19
+ import "../chunks/chunk-2JL2JVZ2.js";
17
20
  export {
18
21
  distanceToCubicBezier,
19
22
  distanceToSegment,
package/dist/version.js CHANGED
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  version
3
- } from "./chunks/chunk-QM7KEWWT.js";
3
+ } from "./chunks/chunk-TXTSE44S.js";
4
4
  export {
5
5
  version
6
6
  };
package/dist/viewport.js CHANGED
@@ -5,31 +5,31 @@ import {
5
5
  screenToLayout,
6
6
  viewportOf,
7
7
  zoomAbout
8
- } from "./chunks/chunk-CE6ZIKJX.js";
9
- import "./chunks/chunk-REOWLPH4.js";
8
+ } from "./chunks/chunk-RLCYVZ4B.js";
9
+ import "./chunks/chunk-7OTWJQGA.js";
10
+ import "./chunks/chunk-OPPVSPEF.js";
10
11
  import "./chunks/chunk-3PZSBNLI.js";
11
12
  import "./chunks/chunk-CKUVEHSS.js";
12
- import "./chunks/chunk-OPPVSPEF.js";
13
13
  import "./chunks/chunk-VPE4AYP7.js";
14
- import "./chunks/chunk-FFHJGWDK.js";
14
+ import "./chunks/chunk-2C5SATRZ.js";
15
15
  import "./chunks/chunk-QYBZZI5H.js";
16
- import "./chunks/chunk-5I3K4R2G.js";
17
- import "./chunks/chunk-B5ARSBOH.js";
18
- import "./chunks/chunk-B5X2RLJG.js";
16
+ import "./chunks/chunk-CFXXFHRK.js";
17
+ import "./chunks/chunk-W2YAW36J.js";
19
18
  import "./chunks/chunk-VX656OAZ.js";
20
19
  import "./chunks/chunk-DZR37KXT.js";
21
20
  import "./chunks/chunk-EIY2SKD3.js";
22
- import "./chunks/chunk-ZPZ7GNBT.js";
23
- import "./chunks/chunk-BZFOFC4D.js";
21
+ import "./chunks/chunk-2VMKQKVO.js";
24
22
  import "./chunks/chunk-HKYXWZQS.js";
25
23
  import "./chunks/chunk-34BOZKIE.js";
26
- import "./chunks/chunk-CGMSKIEO.js";
27
- import "./chunks/chunk-UBQSRCWR.js";
24
+ import "./chunks/chunk-DV5B5UU7.js";
25
+ import "./chunks/chunk-3YBP46PB.js";
26
+ import "./chunks/chunk-VACK24HF.js";
28
27
  import "./chunks/chunk-CPMHA4W5.js";
28
+ import "./chunks/chunk-ZPZ7GNBT.js";
29
29
  import "./chunks/chunk-BSOZW3FC.js";
30
30
  import "./chunks/chunk-RJWPJCIB.js";
31
31
  import "./chunks/chunk-HOAIOEI7.js";
32
- import "./chunks/chunk-4XWZNPQ2.js";
32
+ import "./chunks/chunk-2JL2JVZ2.js";
33
33
  export {
34
34
  axisScaleOf,
35
35
  contains,
@@ -9,27 +9,27 @@ import {
9
9
  schemeColor,
10
10
  schemeCss,
11
11
  schemeRgb
12
- } from "./chunks/chunk-GM7M25NW.js";
13
- import "./chunks/chunk-XSF4RQRP.js";
12
+ } from "./chunks/chunk-2XEAITWM.js";
13
+ import "./chunks/chunk-JGHZ3N34.js";
14
14
  import "./chunks/chunk-G2FD7S3C.js";
15
15
  import "./chunks/chunk-GQZVR5DW.js";
16
- import "./chunks/chunk-WA5WNP6V.js";
17
- import "./chunks/chunk-3GP3KT5L.js";
18
- import "./chunks/chunk-CRCD3ODN.js";
19
- import "./chunks/chunk-B5X2RLJG.js";
16
+ import "./chunks/chunk-OYCQVJYY.js";
17
+ import "./chunks/chunk-BW2NMXRV.js";
18
+ import "./chunks/chunk-ZANALBSX.js";
20
19
  import "./chunks/chunk-VX656OAZ.js";
21
- import "./chunks/chunk-ZPZ7GNBT.js";
22
- import "./chunks/chunk-PFRQBCGC.js";
20
+ import "./chunks/chunk-T3H5ELLA.js";
23
21
  import "./chunks/chunk-HMXCN6PG.js";
24
22
  import "./chunks/chunk-AB35TJST.js";
25
- import "./chunks/chunk-BZFOFC4D.js";
26
- import "./chunks/chunk-CGMSKIEO.js";
27
- import "./chunks/chunk-UBQSRCWR.js";
23
+ import "./chunks/chunk-2VMKQKVO.js";
24
+ import "./chunks/chunk-DV5B5UU7.js";
25
+ import "./chunks/chunk-3YBP46PB.js";
26
+ import "./chunks/chunk-VACK24HF.js";
28
27
  import "./chunks/chunk-CPMHA4W5.js";
28
+ import "./chunks/chunk-ZPZ7GNBT.js";
29
29
  import "./chunks/chunk-BSOZW3FC.js";
30
30
  import "./chunks/chunk-RJWPJCIB.js";
31
31
  import "./chunks/chunk-HOAIOEI7.js";
32
- import "./chunks/chunk-4XWZNPQ2.js";
32
+ import "./chunks/chunk-2JL2JVZ2.js";
33
33
  export {
34
34
  NO_VALUE_COLOR,
35
35
  WALK_FIELDS,
@@ -2,29 +2,29 @@ import {
2
2
  facetLifts,
3
3
  walkHighlight,
4
4
  walkLift
5
- } from "./chunks/chunk-FRTYQQDI.js";
6
- import "./chunks/chunk-GM7M25NW.js";
7
- import "./chunks/chunk-XSF4RQRP.js";
5
+ } from "./chunks/chunk-EVXXFMZ7.js";
6
+ import "./chunks/chunk-2XEAITWM.js";
7
+ import "./chunks/chunk-JGHZ3N34.js";
8
8
  import "./chunks/chunk-G2FD7S3C.js";
9
9
  import "./chunks/chunk-GQZVR5DW.js";
10
- import "./chunks/chunk-WA5WNP6V.js";
11
- import "./chunks/chunk-3GP3KT5L.js";
12
- import "./chunks/chunk-CRCD3ODN.js";
13
- import "./chunks/chunk-B5X2RLJG.js";
10
+ import "./chunks/chunk-OYCQVJYY.js";
11
+ import "./chunks/chunk-BW2NMXRV.js";
12
+ import "./chunks/chunk-ZANALBSX.js";
14
13
  import "./chunks/chunk-VX656OAZ.js";
15
14
  import "./chunks/chunk-EIY2SKD3.js";
16
- import "./chunks/chunk-ZPZ7GNBT.js";
17
- import "./chunks/chunk-PFRQBCGC.js";
15
+ import "./chunks/chunk-T3H5ELLA.js";
18
16
  import "./chunks/chunk-HMXCN6PG.js";
19
17
  import "./chunks/chunk-AB35TJST.js";
20
- import "./chunks/chunk-BZFOFC4D.js";
21
- import "./chunks/chunk-CGMSKIEO.js";
22
- import "./chunks/chunk-UBQSRCWR.js";
18
+ import "./chunks/chunk-2VMKQKVO.js";
19
+ import "./chunks/chunk-DV5B5UU7.js";
20
+ import "./chunks/chunk-3YBP46PB.js";
21
+ import "./chunks/chunk-VACK24HF.js";
23
22
  import "./chunks/chunk-CPMHA4W5.js";
23
+ import "./chunks/chunk-ZPZ7GNBT.js";
24
24
  import "./chunks/chunk-BSOZW3FC.js";
25
25
  import "./chunks/chunk-RJWPJCIB.js";
26
26
  import "./chunks/chunk-HOAIOEI7.js";
27
- import "./chunks/chunk-4XWZNPQ2.js";
27
+ import "./chunks/chunk-2JL2JVZ2.js";
28
28
  export {
29
29
  facetLifts,
30
30
  walkHighlight,
package/dist/walkKey.js CHANGED
@@ -2,18 +2,21 @@ import {
2
2
  rangeText,
3
3
  walkKey,
4
4
  walkPosition
5
- } from "./chunks/chunk-D4ZFRBB4.js";
5
+ } from "./chunks/chunk-JGQQAUVL.js";
6
6
  import "./chunks/chunk-EIY2SKD3.js";
7
- import "./chunks/chunk-PFRQBCGC.js";
7
+ import "./chunks/chunk-T3H5ELLA.js";
8
8
  import "./chunks/chunk-HMXCN6PG.js";
9
9
  import "./chunks/chunk-AB35TJST.js";
10
- import "./chunks/chunk-BZFOFC4D.js";
11
- import "./chunks/chunk-CGMSKIEO.js";
12
- import "./chunks/chunk-UBQSRCWR.js";
10
+ import "./chunks/chunk-2VMKQKVO.js";
11
+ import "./chunks/chunk-DV5B5UU7.js";
12
+ import "./chunks/chunk-3YBP46PB.js";
13
+ import "./chunks/chunk-VACK24HF.js";
13
14
  import "./chunks/chunk-CPMHA4W5.js";
15
+ import "./chunks/chunk-ZPZ7GNBT.js";
14
16
  import "./chunks/chunk-BSOZW3FC.js";
15
17
  import "./chunks/chunk-RJWPJCIB.js";
16
18
  import "./chunks/chunk-HOAIOEI7.js";
19
+ import "./chunks/chunk-2JL2JVZ2.js";
17
20
  export {
18
21
  rangeText,
19
22
  walkKey,
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/bandage-core",
3
- "version": "11.4.0",
3
+ "version": "11.6.1",
4
4
  "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
5
5
  "license": "GPL-3.0-or-later",
6
6
  "repository": {