@jbrowse/bandage-core 11.4.0 → 11.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (142) hide show
  1. package/dist/alleleProjection/projectAlleles.js +1 -1
  2. package/dist/bubbles/bubbleHalos.js +9 -6
  3. package/dist/bubbles/classifyBubble.js +8 -5
  4. package/dist/bubbles/popBubble.js +3 -3
  5. package/dist/bubbles/superbubbles.js +11 -11
  6. package/dist/chunks/{chunk-FFHJGWDK.js → chunk-2C5SATRZ.js} +5 -5
  7. package/dist/chunks/{chunk-4XWZNPQ2.js → chunk-2JL2JVZ2.js} +1 -1
  8. package/dist/chunks/{chunk-BZFOFC4D.js → chunk-2VMKQKVO.js} +17 -7
  9. package/dist/chunks/{chunk-GM7M25NW.js → chunk-2XEAITWM.js} +15 -5
  10. package/dist/chunks/{chunk-7BTO7MZS.js → chunk-376YFQOY.js} +2 -2
  11. package/dist/chunks/{chunk-EFD753MS.js → chunk-3FWNQNF7.js} +1 -1
  12. package/dist/chunks/{chunk-B5X2RLJG.js → chunk-3YBP46PB.js} +27 -2
  13. package/dist/chunks/{chunk-EJRJAAN7.js → chunk-4DMSPNYV.js} +47 -27
  14. package/dist/chunks/{chunk-I4BYUNJN.js → chunk-4WXFQOYV.js} +5 -5
  15. package/dist/chunks/{chunk-OMUPUB4J.js → chunk-56L6R6D2.js} +2 -2
  16. package/dist/chunks/{chunk-C44YRP5F.js → chunk-5OJZV6YT.js} +3 -2
  17. package/dist/chunks/{chunk-234NFZS4.js → chunk-5ORP7EFJ.js} +1 -1
  18. package/dist/chunks/{chunk-TUQKGAK3.js → chunk-5WB7O7IT.js} +4 -4
  19. package/dist/chunks/{chunk-3VCKBSML.js → chunk-6YRSOL4K.js} +2 -2
  20. package/dist/chunks/{chunk-REOWLPH4.js → chunk-7OTWJQGA.js} +13 -13
  21. package/dist/chunks/{chunk-77EGQQJU.js → chunk-BFUS3ENH.js} +2 -2
  22. package/dist/chunks/{chunk-TGUFT6KK.js → chunk-BLUEFYIR.js} +4 -1
  23. package/dist/chunks/{chunk-JQ52XYD2.js → chunk-BVWMVWLJ.js} +12 -12
  24. package/dist/chunks/{chunk-3GP3KT5L.js → chunk-BW2NMXRV.js} +5 -5
  25. package/dist/chunks/{chunk-2Q22S52W.js → chunk-C6E6HXP5.js} +8 -8
  26. package/dist/chunks/{chunk-5I3K4R2G.js → chunk-CFXXFHRK.js} +2 -1
  27. package/dist/chunks/{chunk-JMABOQWL.js → chunk-CO6RGQAD.js} +1 -6
  28. package/dist/chunks/{chunk-M75QPZNJ.js → chunk-D3E7AXBB.js} +68 -26
  29. package/dist/chunks/{chunk-CGMSKIEO.js → chunk-DV5B5UU7.js} +55 -8
  30. package/dist/chunks/{chunk-G6UIYQZR.js → chunk-EQDQ7P4Y.js} +3 -2
  31. package/dist/chunks/{chunk-FRTYQQDI.js → chunk-EVXXFMZ7.js} +9 -9
  32. package/dist/chunks/{chunk-BXLLMWC3.js → chunk-F3KQQDKP.js} +1 -1
  33. package/dist/chunks/{chunk-6EOB6ANX.js → chunk-GZ36HNPJ.js} +1 -1
  34. package/dist/chunks/{chunk-3HGYGISG.js → chunk-HV35LDYH.js} +3 -3
  35. package/dist/chunks/{chunk-XSF4RQRP.js → chunk-JGHZ3N34.js} +22 -15
  36. package/dist/chunks/{chunk-D4ZFRBB4.js → chunk-JGQQAUVL.js} +3 -3
  37. package/dist/chunks/{chunk-PSCSZSVK.js → chunk-KA4F3N55.js} +4 -4
  38. package/dist/chunks/{chunk-SOMZGDVS.js → chunk-KJDERUQF.js} +1 -1
  39. package/dist/chunks/{chunk-E4ZM4OOJ.js → chunk-KZMSSPS6.js} +2 -2
  40. package/dist/chunks/{chunk-JDZ5GTZT.js → chunk-MEVTV4FI.js} +1 -1
  41. package/dist/chunks/{chunk-PNMJFFNB.js → chunk-MHZTTLBU.js} +1 -1
  42. package/dist/chunks/{chunk-VIQL7GZ4.js → chunk-MXLYBDOX.js} +14 -13
  43. package/dist/chunks/{chunk-3LZ334X4.js → chunk-NXBW6KY6.js} +6 -7
  44. package/dist/chunks/{chunk-7O7EGTYG.js → chunk-OUM54ZSQ.js} +2 -2
  45. package/dist/chunks/{chunk-WA5WNP6V.js → chunk-OYCQVJYY.js} +1 -1
  46. package/dist/chunks/{chunk-TZLEHZVC.js → chunk-P5PBJONQ.js} +1 -1
  47. package/dist/chunks/chunk-PQIFYQVI.js +21 -0
  48. package/dist/chunks/{chunk-6VVGFQ7S.js → chunk-QCOVHLJO.js} +1 -1
  49. package/dist/chunks/{chunk-TEXAKEJX.js → chunk-QD35GH4C.js} +3 -3
  50. package/dist/chunks/{chunk-CE6ZIKJX.js → chunk-RLCYVZ4B.js} +1 -1
  51. package/dist/chunks/{chunk-6YJESZND.js → chunk-ROLACYCO.js} +20 -20
  52. package/dist/chunks/{chunk-A7H753BA.js → chunk-SDI6BVG7.js} +5 -6
  53. package/dist/chunks/{chunk-A4JDEUAI.js → chunk-SNF2MIEF.js} +1 -1
  54. package/dist/chunks/{chunk-NMWQUFPF.js → chunk-SVVFWTG4.js} +2 -2
  55. package/dist/chunks/{chunk-PFRQBCGC.js → chunk-T3H5ELLA.js} +4 -4
  56. package/dist/chunks/{chunk-QM7KEWWT.js → chunk-TXTSE44S.js} +1 -1
  57. package/dist/chunks/{chunk-UBQSRCWR.js → chunk-VACK24HF.js} +43 -3
  58. package/dist/chunks/{chunk-HSVFCA2J.js → chunk-VO6FKNZE.js} +1 -1
  59. package/dist/chunks/{chunk-B5ARSBOH.js → chunk-W2YAW36J.js} +8 -7
  60. package/dist/chunks/{chunk-TJOOHTJ6.js → chunk-WI6SUU5B.js} +2 -2
  61. package/dist/chunks/{chunk-GJU6BJJA.js → chunk-XR2HMGAS.js} +1 -1
  62. package/dist/chunks/{chunk-N7G5ROIV.js → chunk-XXOBCANT.js} +26 -12
  63. package/dist/chunks/{chunk-G3I4TCEZ.js → chunk-YEYQFNFQ.js} +1 -1
  64. package/dist/chunks/{chunk-UFUSPK2A.js → chunk-YYIU7P73.js} +4 -1
  65. package/dist/chunks/{chunk-CRCD3ODN.js → chunk-ZANALBSX.js} +11 -3
  66. package/dist/cli/figure.js +52 -47
  67. package/dist/cli/fold.js +12 -12
  68. package/dist/deletionEdges.js +5 -2
  69. package/dist/facetGrid.js +2 -2
  70. package/dist/figure.js +36 -36
  71. package/dist/figureData.js +38 -38
  72. package/dist/figureScene.js +26 -26
  73. package/dist/figureSettings.js +12 -12
  74. package/dist/foldVariants.js +2 -2
  75. package/dist/gaf/parseGaf.js +1 -1
  76. package/dist/gbzCut.js +4 -4
  77. package/dist/gbzWindow.js +3 -3
  78. package/dist/genes/backboneGenes.js +4 -4
  79. package/dist/genes/geneFiles.js +1 -1
  80. package/dist/genes/genePins.js +3 -3
  81. package/dist/gfa/gfaConverter.js +4 -4
  82. package/dist/gfa/graphTables.js +2 -2
  83. package/dist/gfa-core/gfaParser.js +1 -1
  84. package/dist/gfa-core/index.js +1 -1
  85. package/dist/graphLabels.js +7 -4
  86. package/dist/index.js +96 -90
  87. package/dist/labelLayout.js +11 -8
  88. package/dist/layout/anchoredLayout.js +1 -1
  89. package/dist/layout/forceCache.js +12 -12
  90. package/dist/layout/mergeRuns.js +2 -2
  91. package/dist/layout/placeOffReference.js +1 -1
  92. package/dist/layout/sampleRowLayout.js +2 -2
  93. package/dist/layout/trimToWindow.js +2 -2
  94. package/dist/layout/tubeMapLayout.js +14 -14
  95. package/dist/layout/walkRowDraw.js +12 -12
  96. package/dist/layout/walkRowLayout.js +7 -7
  97. package/dist/layout/walkRowLinks.js +1 -1
  98. package/dist/layout/walkRowRuns.js +4 -4
  99. package/dist/layout/walkRows.js +5 -5
  100. package/dist/layout/walkStrip.js +17 -17
  101. package/dist/layoutEngines.js +1 -1
  102. package/dist/layoutModes.js +17 -17
  103. package/dist/locus.js +8 -0
  104. package/dist/nodeWidths.js +5 -3
  105. package/dist/pansn.js +1 -1
  106. package/dist/pathAnchoring.js +4 -2
  107. package/dist/pathColors.js +8 -8
  108. package/dist/pipeline.js +11 -11
  109. package/dist/reference.js +2 -2
  110. package/dist/referenceStrip.js +12 -12
  111. package/dist/renderer/Canvas2DRenderer.js +1 -1
  112. package/dist/renderer/GeometryBuilder.js +15 -13
  113. package/dist/tubeMap/axis.js +8 -5
  114. package/dist/tubeMap/bundle.js +15 -15
  115. package/dist/tubeMap/coarsen.js +15 -15
  116. package/dist/tubeMap/deviations.js +18 -18
  117. package/dist/tubeMap/draw.js +10 -8
  118. package/dist/tubeMap/genes.js +9 -6
  119. package/dist/tubeMap/nodeColors.js +12 -12
  120. package/dist/tubeMap/reads.js +4 -4
  121. package/dist/types/figureData.d.ts +12 -0
  122. package/dist/types/gaf/parseGaf.d.ts +1 -1
  123. package/dist/types/gfa/graphTables.d.ts +3 -2
  124. package/dist/types/index.d.ts +1 -0
  125. package/dist/types/locus.d.ts +10 -0
  126. package/dist/types/nodeWidths.d.ts +2 -1
  127. package/dist/types/pathAnchoring.d.ts +2 -0
  128. package/dist/types/renderer/Canvas2DRenderer.d.ts +2 -0
  129. package/dist/types/renderer/GeometryBuilder.d.ts +1 -0
  130. package/dist/types/tubeMap/reads.d.ts +0 -1
  131. package/dist/types/util/geometry.d.ts +7 -1
  132. package/dist/types/version.d.ts +1 -1
  133. package/dist/util/SpatialIndex.js +7 -4
  134. package/dist/util/edgeCurves.js +6 -3
  135. package/dist/util/geometry.js +1 -1
  136. package/dist/util/hitDetection.js +8 -5
  137. package/dist/version.js +1 -1
  138. package/dist/viewport.js +12 -12
  139. package/dist/walkEncoding.js +12 -12
  140. package/dist/walkHighlight.js +13 -13
  141. package/dist/walkKey.js +8 -5
  142. package/package.json +1 -1
@@ -1,27 +1,27 @@
1
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  import {
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  layoutEngine
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- } from "./chunk-JMABOQWL.js";
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+ } from "./chunk-CO6RGQAD.js";
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  import {
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  layoutModeByValue
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- } from "./chunk-TEXAKEJX.js";
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+ } from "./chunk-QD35GH4C.js";
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  import {
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  parseRegion
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- } from "./chunk-TUQKGAK3.js";
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+ } from "./chunk-5WB7O7IT.js";
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  import {
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  genePins
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- } from "./chunk-77EGQQJU.js";
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+ } from "./chunk-BFUS3ENH.js";
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  import {
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  version
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- } from "./chunk-QM7KEWWT.js";
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+ } from "./chunk-TXTSE44S.js";
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  import {
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  axisScaleOf
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- } from "./chunk-CE6ZIKJX.js";
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+ } from "./chunk-RLCYVZ4B.js";
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  import {
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  figureScene
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- } from "./chunk-JQ52XYD2.js";
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+ } from "./chunk-BVWMVWLJ.js";
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  import {
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  encodingStops
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- } from "./chunk-GM7M25NW.js";
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+ } from "./chunk-2XEAITWM.js";
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  import {
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  abgrAlpha,
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  abgrBlue,
@@ -30,13 +30,16 @@ import {
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  } from "./chunk-G2FD7S3C.js";
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  import {
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  FIGURE_DEFAULTS
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- } from "./chunk-EFD753MS.js";
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+ } from "./chunk-3FWNQNF7.js";
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  import {
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  engineSettingsOf,
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  fitTransform,
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  forceLayout,
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  loadGraph
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- } from "./chunk-REOWLPH4.js";
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+ } from "./chunk-7OTWJQGA.js";
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+ import {
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+ referenceVisitStarts
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+ } from "./chunk-3YBP46PB.js";
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  import {
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  isBackbone
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  } from "./chunk-RJWPJCIB.js";
@@ -68,6 +71,7 @@ function figureData(graph, layout, o = {}) {
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  const {
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  bounds,
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  colorScheme,
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+ referenceRamp,
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  drawnDeletions,
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  lift,
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  facets,
@@ -225,6 +229,7 @@ function figureData(graph, layout, o = {}) {
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  }
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  }
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  }
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+ const startsOf = referenceVisitStarts(graph);
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  return {
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  meta: {
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  generator: `@jbrowse/bandage-core@${version}`,
@@ -234,7 +239,13 @@ function figureData(graph, layout, o = {}) {
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  pixelRows,
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  referenceAxis: layout.referenceAxis ?? false,
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  colorScheme,
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- referenceName: referenceName ?? null
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+ referenceName: referenceName ?? null,
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+ // the reference bp the position hues run between, hue 0 to 300
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+ referenceRamp: referenceRamp ? {
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+ start: referenceRamp.start,
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+ end: referenceRamp.start + referenceRamp.span
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+ } : null,
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+ deletions: drawnDeletions.shown.length
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  },
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  panels: {
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  panel: panels.map((p) => p.name),
@@ -253,7 +264,10 @@ function figureData(graph, layout, o = {}) {
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  name: graph.nodes.map((n) => n.name),
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  length: graph.nodes.map((n) => n.length),
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  depth: graph.nodes.map((n) => n.depth),
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- backbone: graph.nodes.map((n) => isBackbone(n))
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+ backbone: graph.nodes.map((n) => isBackbone(n)),
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+ referenceVisits: graph.nodes.map(
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+ (n) => isBackbone(n) ? startsOf(n).length : 0
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+ )
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  },
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  rowLabels: {
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  label: (layout.rowLabels ?? []).map((r) => r.label),
@@ -1,7 +1,7 @@
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  import {
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  computeColorSchemeRange,
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  getNodeColor
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- } from "./chunk-XSF4RQRP.js";
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+ } from "./chunk-JGHZ3N34.js";
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  import {
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  abgrToCssRgba
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  } from "./chunk-G2FD7S3C.js";
@@ -186,7 +186,10 @@ function walkRowBlocks(rows, join = ribbonJoin(rows)) {
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  if (setKey.has(id)) {
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  const root = find(id);
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  total.set(root, (total.get(root) ?? 0) + bp);
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- least.set(root, [least.get(root) ?? id, id].sort()[0]);
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+ const lowest = least.get(root);
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+ if (lowest === void 0 || id < lowest) {
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+ least.set(root, id);
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+ }
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  }
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  }
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  }
@@ -37,13 +37,20 @@ function nodeWidthPx(node, contigThickness, nodeWidth, mean) {
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  function maxNodeWidthPx(contigThickness, nodeWidth) {
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  return contigThickness * (nodeWidth === "depth" ? MAX_FACTOR : 1);
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  }
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- function nodeInk(graph, nodeById, contigThickness, nodeWidth) {
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+ var MIN_WALK_LANE_PX = 4;
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+ function walkLaneWidthPx(width, lanes) {
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+ return Math.max(width / lanes, MIN_WALK_LANE_PX);
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+ }
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+ function nodeInk(graph, nodeById, contigThickness, nodeWidth, lanes = 0) {
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  const mean = graph ? meanDepth(graph) : 0;
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+ const reach = (width) => lanes > 0 ? walkLaneWidthPx(width, lanes) * lanes / 2 : width / 2;
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  return {
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- maxHalfWidthPx: maxNodeWidthPx(contigThickness, nodeWidth) / 2,
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+ maxHalfWidthPx: reach(maxNodeWidthPx(contigThickness, nodeWidth)),
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  halfWidthPx: (id) => {
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  const node = nodeById?.get(id);
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- return node ? nodeWidthPx(node, contigThickness, nodeWidth, mean) / 2 : contigThickness / 2;
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+ return reach(
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+ node ? nodeWidthPx(node, contigThickness, nodeWidth, mean) : contigThickness
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+ );
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  }
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  };
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  }
@@ -53,5 +60,6 @@ export {
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  meanDepth,
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  nodeWidthPx,
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  maxNodeWidthPx,
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+ walkLaneWidthPx,
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  nodeInk
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  };
@@ -4,41 +4,41 @@ import {
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  } from "../chunks/chunk-O4EGE27I.js";
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  import {
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  backboneGenes
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- } from "../chunks/chunk-7BTO7MZS.js";
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- import "../chunks/chunk-G6UIYQZR.js";
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+ } from "../chunks/chunk-376YFQOY.js";
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+ import "../chunks/chunk-EQDQ7P4Y.js";
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  import {
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  figureSvg
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- } from "../chunks/chunk-6YJESZND.js";
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- import "../chunks/chunk-EJRJAAN7.js";
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+ } from "../chunks/chunk-ROLACYCO.js";
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+ import "../chunks/chunk-4WXFQOYV.js";
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+ import "../chunks/chunk-4DMSPNYV.js";
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  import "../chunks/chunk-RBCE2OQH.js";
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  import "../chunks/chunk-V4YML3GR.js";
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- import "../chunks/chunk-I4BYUNJN.js";
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  import {
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  genesOnRow,
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  placeRowGenes
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- } from "../chunks/chunk-VIQL7GZ4.js";
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+ } from "../chunks/chunk-MXLYBDOX.js";
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  import "../chunks/chunk-JSUCGZ6K.js";
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- import "../chunks/chunk-PSCSZSVK.js";
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- import "../chunks/chunk-OMUPUB4J.js";
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- import "../chunks/chunk-3VCKBSML.js";
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+ import "../chunks/chunk-KA4F3N55.js";
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+ import "../chunks/chunk-56L6R6D2.js";
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+ import "../chunks/chunk-6YRSOL4K.js";
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  import "../chunks/chunk-H2H4Y3TV.js";
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  import {
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  walkLayers
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- } from "../chunks/chunk-N7G5ROIV.js";
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+ } from "../chunks/chunk-XXOBCANT.js";
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- } from "../chunks/chunk-JMABOQWL.js";
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+ } from "../chunks/chunk-CO6RGQAD.js";
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- } from "../chunks/chunk-TEXAKEJX.js";
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- import "../chunks/chunk-3LZ334X4.js";
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- import "../chunks/chunk-A7H753BA.js";
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- import "../chunks/chunk-GJU6BJJA.js";
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+ } from "../chunks/chunk-QD35GH4C.js";
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+ import "../chunks/chunk-NXBW6KY6.js";
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+ import "../chunks/chunk-SDI6BVG7.js";
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+ import "../chunks/chunk-XR2HMGAS.js";
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  import "../chunks/chunk-GJLZ2MKE.js";
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- import "../chunks/chunk-C44YRP5F.js";
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+ import "../chunks/chunk-5OJZV6YT.js";
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  import "../chunks/chunk-UAFATXYA.js";
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@@ -47,60 +47,60 @@ import {
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- } from "../chunks/chunk-TUQKGAK3.js";
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- import "../chunks/chunk-NMWQUFPF.js";
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+ } from "../chunks/chunk-5WB7O7IT.js";
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+ import "../chunks/chunk-SVVFWTG4.js";
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  import "../chunks/chunk-HNWJ4B7S.js";
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- import "../chunks/chunk-77EGQQJU.js";
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- import "../chunks/chunk-QM7KEWWT.js";
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- import "../chunks/chunk-CE6ZIKJX.js";
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- import "../chunks/chunk-JQ52XYD2.js";
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+ import "../chunks/chunk-BFUS3ENH.js";
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+ import "../chunks/chunk-TXTSE44S.js";
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+ import "../chunks/chunk-RLCYVZ4B.js";
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+ import "../chunks/chunk-BVWMVWLJ.js";
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  import "../chunks/chunk-LOCJN3BZ.js";
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- import "../chunks/chunk-FRTYQQDI.js";
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- import "../chunks/chunk-GM7M25NW.js";
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- import "../chunks/chunk-D4ZFRBB4.js";
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- import "../chunks/chunk-XSF4RQRP.js";
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+ import "../chunks/chunk-EVXXFMZ7.js";
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+ import "../chunks/chunk-2XEAITWM.js";
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+ import "../chunks/chunk-JGHZ3N34.js";
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  import "../chunks/chunk-G2FD7S3C.js";
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+ import "../chunks/chunk-JGQQAUVL.js";
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- import "../chunks/chunk-WA5WNP6V.js";
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- import "../chunks/chunk-TZLEHZVC.js";
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+ import "../chunks/chunk-OYCQVJYY.js";
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+ import "../chunks/chunk-P5PBJONQ.js";
66
66
  import {
67
67
  filterSamples,
68
68
  walkRows
69
- } from "../chunks/chunk-JDZ5GTZT.js";
70
- import "../chunks/chunk-M75QPZNJ.js";
71
- import "../chunks/chunk-3GP3KT5L.js";
72
- import "../chunks/chunk-CRCD3ODN.js";
73
- import "../chunks/chunk-EFD753MS.js";
74
- import "../chunks/chunk-REOWLPH4.js";
69
+ } from "../chunks/chunk-MEVTV4FI.js";
70
+ import "../chunks/chunk-D3E7AXBB.js";
71
+ import "../chunks/chunk-BW2NMXRV.js";
72
+ import "../chunks/chunk-ZANALBSX.js";
73
+ import "../chunks/chunk-3FWNQNF7.js";
74
+ import "../chunks/chunk-7OTWJQGA.js";
75
+ import "../chunks/chunk-OPPVSPEF.js";
75
76
  import "../chunks/chunk-3PZSBNLI.js";
76
77
  import "../chunks/chunk-CKUVEHSS.js";
77
- import "../chunks/chunk-OPPVSPEF.js";
78
78
  import "../chunks/chunk-VPE4AYP7.js";
79
- import "../chunks/chunk-FFHJGWDK.js";
79
+ import "../chunks/chunk-2C5SATRZ.js";
80
80
  import "../chunks/chunk-QYBZZI5H.js";
81
- import "../chunks/chunk-5I3K4R2G.js";
82
- import "../chunks/chunk-B5ARSBOH.js";
83
- import "../chunks/chunk-B5X2RLJG.js";
81
+ import "../chunks/chunk-CFXXFHRK.js";
82
+ import "../chunks/chunk-W2YAW36J.js";
84
83
  import "../chunks/chunk-VX656OAZ.js";
85
- import "../chunks/chunk-234NFZS4.js";
84
+ import "../chunks/chunk-5ORP7EFJ.js";
86
85
  import "../chunks/chunk-DZR37KXT.js";
87
86
  import "../chunks/chunk-EIY2SKD3.js";
88
- import "../chunks/chunk-ZPZ7GNBT.js";
89
- import "../chunks/chunk-PFRQBCGC.js";
87
+ import "../chunks/chunk-T3H5ELLA.js";
90
88
  import "../chunks/chunk-HMXCN6PG.js";
91
89
  import "../chunks/chunk-AB35TJST.js";
92
- import "../chunks/chunk-BZFOFC4D.js";
90
+ import "../chunks/chunk-2VMKQKVO.js";
93
91
  import "../chunks/chunk-HKYXWZQS.js";
94
92
  import "../chunks/chunk-34BOZKIE.js";
95
93
  import "../chunks/chunk-JKJWSY4V.js";
96
- import "../chunks/chunk-CGMSKIEO.js";
97
- import "../chunks/chunk-UBQSRCWR.js";
94
+ import "../chunks/chunk-DV5B5UU7.js";
95
+ import "../chunks/chunk-3YBP46PB.js";
96
+ import "../chunks/chunk-VACK24HF.js";
98
97
  import "../chunks/chunk-CPMHA4W5.js";
98
+ import "../chunks/chunk-ZPZ7GNBT.js";
99
99
  import "../chunks/chunk-BSOZW3FC.js";
100
100
  import "../chunks/chunk-RJWPJCIB.js";
101
101
  import "../chunks/chunk-HOAIOEI7.js";
102
- import "../chunks/chunk-TGUFT6KK.js";
103
- import "../chunks/chunk-4XWZNPQ2.js";
102
+ import "../chunks/chunk-BLUEFYIR.js";
103
+ import "../chunks/chunk-2JL2JVZ2.js";
104
104
 
105
105
  // src/cli/figure.ts
106
106
  import { access, open, readFile, writeFile } from "node:fs/promises";
@@ -115,6 +115,11 @@ function byteSource(location) {
115
115
  const res = await fetchOk(location, {
116
116
  headers: { range: `bytes=${position}-${position + length - 1}` }
117
117
  });
118
+ if (res.status !== 206) {
119
+ throw new Error(
120
+ `${location} ignored the Range request (HTTP ${res.status})`
121
+ );
122
+ }
118
123
  return new Uint8Array(await res.arrayBuffer());
119
124
  }
120
125
  };
package/dist/cli/fold.js CHANGED
@@ -7,33 +7,33 @@ import {
7
7
  } from "../chunks/chunk-O4EGE27I.js";
8
8
  import {
9
9
  foldVariants
10
- } from "../chunks/chunk-SOMZGDVS.js";
10
+ } from "../chunks/chunk-KJDERUQF.js";
11
11
  import {
12
12
  loadGraph
13
- } from "../chunks/chunk-REOWLPH4.js";
13
+ } from "../chunks/chunk-7OTWJQGA.js";
14
+ import "../chunks/chunk-OPPVSPEF.js";
14
15
  import "../chunks/chunk-3PZSBNLI.js";
15
16
  import "../chunks/chunk-CKUVEHSS.js";
16
- import "../chunks/chunk-OPPVSPEF.js";
17
17
  import "../chunks/chunk-VPE4AYP7.js";
18
- import "../chunks/chunk-FFHJGWDK.js";
18
+ import "../chunks/chunk-2C5SATRZ.js";
19
19
  import "../chunks/chunk-QYBZZI5H.js";
20
- import "../chunks/chunk-5I3K4R2G.js";
21
- import "../chunks/chunk-B5ARSBOH.js";
22
- import "../chunks/chunk-B5X2RLJG.js";
20
+ import "../chunks/chunk-CFXXFHRK.js";
21
+ import "../chunks/chunk-W2YAW36J.js";
23
22
  import "../chunks/chunk-VX656OAZ.js";
24
23
  import "../chunks/chunk-DZR37KXT.js";
25
24
  import "../chunks/chunk-EIY2SKD3.js";
26
- import "../chunks/chunk-ZPZ7GNBT.js";
27
- import "../chunks/chunk-BZFOFC4D.js";
25
+ import "../chunks/chunk-2VMKQKVO.js";
28
26
  import "../chunks/chunk-HKYXWZQS.js";
29
27
  import "../chunks/chunk-34BOZKIE.js";
30
- import "../chunks/chunk-CGMSKIEO.js";
31
- import "../chunks/chunk-UBQSRCWR.js";
28
+ import "../chunks/chunk-DV5B5UU7.js";
29
+ import "../chunks/chunk-3YBP46PB.js";
30
+ import "../chunks/chunk-VACK24HF.js";
32
31
  import "../chunks/chunk-CPMHA4W5.js";
32
+ import "../chunks/chunk-ZPZ7GNBT.js";
33
33
  import "../chunks/chunk-BSOZW3FC.js";
34
34
  import "../chunks/chunk-RJWPJCIB.js";
35
35
  import "../chunks/chunk-HOAIOEI7.js";
36
- import "../chunks/chunk-4XWZNPQ2.js";
36
+ import "../chunks/chunk-2JL2JVZ2.js";
37
37
 
38
38
  // src/cli/fold.ts
39
39
  import { readFile, writeFile } from "node:fs/promises";
@@ -3,12 +3,15 @@ import {
3
3
  deletionDrawing,
4
4
  deletionEdges,
5
5
  edgeCurvesOf
6
- } from "./chunks/chunk-CGMSKIEO.js";
7
- import "./chunks/chunk-UBQSRCWR.js";
6
+ } from "./chunks/chunk-DV5B5UU7.js";
7
+ import "./chunks/chunk-3YBP46PB.js";
8
+ import "./chunks/chunk-VACK24HF.js";
8
9
  import "./chunks/chunk-CPMHA4W5.js";
10
+ import "./chunks/chunk-ZPZ7GNBT.js";
9
11
  import "./chunks/chunk-BSOZW3FC.js";
10
12
  import "./chunks/chunk-RJWPJCIB.js";
11
13
  import "./chunks/chunk-HOAIOEI7.js";
14
+ import "./chunks/chunk-2JL2JVZ2.js";
12
15
  export {
13
16
  closableDeletions,
14
17
  deletionDrawing,
package/dist/facetGrid.js CHANGED
@@ -6,8 +6,8 @@ import {
6
6
  facetCells,
7
7
  facetGrid,
8
8
  facetSettingOf
9
- } from "./chunks/chunk-TGUFT6KK.js";
10
- import "./chunks/chunk-4XWZNPQ2.js";
9
+ } from "./chunks/chunk-BLUEFYIR.js";
10
+ import "./chunks/chunk-2JL2JVZ2.js";
11
11
  export {
12
12
  FACET_FIELDS,
13
13
  FACET_GAP_PX,
package/dist/figure.js CHANGED
@@ -1,64 +1,64 @@
1
1
  import {
2
2
  figureSvg
3
- } from "./chunks/chunk-6YJESZND.js";
4
- import "./chunks/chunk-EJRJAAN7.js";
3
+ } from "./chunks/chunk-ROLACYCO.js";
4
+ import "./chunks/chunk-4WXFQOYV.js";
5
+ import "./chunks/chunk-4DMSPNYV.js";
5
6
  import "./chunks/chunk-RBCE2OQH.js";
6
7
  import "./chunks/chunk-V4YML3GR.js";
7
- import "./chunks/chunk-I4BYUNJN.js";
8
- import "./chunks/chunk-VIQL7GZ4.js";
8
+ import "./chunks/chunk-MXLYBDOX.js";
9
9
  import "./chunks/chunk-JSUCGZ6K.js";
10
- import "./chunks/chunk-PSCSZSVK.js";
11
- import "./chunks/chunk-OMUPUB4J.js";
12
- import "./chunks/chunk-3VCKBSML.js";
10
+ import "./chunks/chunk-KA4F3N55.js";
11
+ import "./chunks/chunk-56L6R6D2.js";
12
+ import "./chunks/chunk-6YRSOL4K.js";
13
13
  import "./chunks/chunk-H2H4Y3TV.js";
14
- import "./chunks/chunk-77EGQQJU.js";
15
- import "./chunks/chunk-QM7KEWWT.js";
16
- import "./chunks/chunk-CE6ZIKJX.js";
17
- import "./chunks/chunk-JQ52XYD2.js";
14
+ import "./chunks/chunk-BFUS3ENH.js";
15
+ import "./chunks/chunk-TXTSE44S.js";
16
+ import "./chunks/chunk-RLCYVZ4B.js";
17
+ import "./chunks/chunk-BVWMVWLJ.js";
18
18
  import "./chunks/chunk-LOCJN3BZ.js";
19
- import "./chunks/chunk-FRTYQQDI.js";
20
- import "./chunks/chunk-GM7M25NW.js";
21
- import "./chunks/chunk-D4ZFRBB4.js";
22
- import "./chunks/chunk-XSF4RQRP.js";
19
+ import "./chunks/chunk-EVXXFMZ7.js";
20
+ import "./chunks/chunk-2XEAITWM.js";
21
+ import "./chunks/chunk-JGHZ3N34.js";
23
22
  import "./chunks/chunk-G2FD7S3C.js";
23
+ import "./chunks/chunk-JGQQAUVL.js";
24
24
  import "./chunks/chunk-GQZVR5DW.js";
25
- import "./chunks/chunk-WA5WNP6V.js";
26
- import "./chunks/chunk-TZLEHZVC.js";
27
- import "./chunks/chunk-JDZ5GTZT.js";
28
- import "./chunks/chunk-M75QPZNJ.js";
29
- import "./chunks/chunk-3GP3KT5L.js";
30
- import "./chunks/chunk-CRCD3ODN.js";
31
- import "./chunks/chunk-EFD753MS.js";
32
- import "./chunks/chunk-REOWLPH4.js";
25
+ import "./chunks/chunk-OYCQVJYY.js";
26
+ import "./chunks/chunk-P5PBJONQ.js";
27
+ import "./chunks/chunk-MEVTV4FI.js";
28
+ import "./chunks/chunk-D3E7AXBB.js";
29
+ import "./chunks/chunk-BW2NMXRV.js";
30
+ import "./chunks/chunk-ZANALBSX.js";
31
+ import "./chunks/chunk-3FWNQNF7.js";
32
+ import "./chunks/chunk-7OTWJQGA.js";
33
+ import "./chunks/chunk-OPPVSPEF.js";
33
34
  import "./chunks/chunk-3PZSBNLI.js";
34
35
  import "./chunks/chunk-CKUVEHSS.js";
35
- import "./chunks/chunk-OPPVSPEF.js";
36
36
  import "./chunks/chunk-VPE4AYP7.js";
37
- import "./chunks/chunk-FFHJGWDK.js";
37
+ import "./chunks/chunk-2C5SATRZ.js";
38
38
  import "./chunks/chunk-QYBZZI5H.js";
39
- import "./chunks/chunk-5I3K4R2G.js";
40
- import "./chunks/chunk-B5ARSBOH.js";
41
- import "./chunks/chunk-B5X2RLJG.js";
39
+ import "./chunks/chunk-CFXXFHRK.js";
40
+ import "./chunks/chunk-W2YAW36J.js";
42
41
  import "./chunks/chunk-VX656OAZ.js";
43
- import "./chunks/chunk-234NFZS4.js";
42
+ import "./chunks/chunk-5ORP7EFJ.js";
44
43
  import "./chunks/chunk-DZR37KXT.js";
45
44
  import "./chunks/chunk-EIY2SKD3.js";
46
- import "./chunks/chunk-ZPZ7GNBT.js";
47
- import "./chunks/chunk-PFRQBCGC.js";
45
+ import "./chunks/chunk-T3H5ELLA.js";
48
46
  import "./chunks/chunk-HMXCN6PG.js";
49
47
  import "./chunks/chunk-AB35TJST.js";
50
- import "./chunks/chunk-BZFOFC4D.js";
48
+ import "./chunks/chunk-2VMKQKVO.js";
51
49
  import "./chunks/chunk-HKYXWZQS.js";
52
50
  import "./chunks/chunk-34BOZKIE.js";
53
51
  import "./chunks/chunk-JKJWSY4V.js";
54
- import "./chunks/chunk-CGMSKIEO.js";
55
- import "./chunks/chunk-UBQSRCWR.js";
52
+ import "./chunks/chunk-DV5B5UU7.js";
53
+ import "./chunks/chunk-3YBP46PB.js";
54
+ import "./chunks/chunk-VACK24HF.js";
56
55
  import "./chunks/chunk-CPMHA4W5.js";
56
+ import "./chunks/chunk-ZPZ7GNBT.js";
57
57
  import "./chunks/chunk-BSOZW3FC.js";
58
58
  import "./chunks/chunk-RJWPJCIB.js";
59
59
  import "./chunks/chunk-HOAIOEI7.js";
60
- import "./chunks/chunk-TGUFT6KK.js";
61
- import "./chunks/chunk-4XWZNPQ2.js";
60
+ import "./chunks/chunk-BLUEFYIR.js";
61
+ import "./chunks/chunk-2JL2JVZ2.js";
62
62
  export {
63
63
  figureSvg
64
64
  };
@@ -3,68 +3,68 @@ import {
3
3
  gfaFigureData,
4
4
  laidOutGraph,
5
5
  walkLayers
6
- } from "./chunks/chunk-N7G5ROIV.js";
7
- import "./chunks/chunk-JMABOQWL.js";
8
- import "./chunks/chunk-TEXAKEJX.js";
9
- import "./chunks/chunk-3LZ334X4.js";
10
- import "./chunks/chunk-A7H753BA.js";
11
- import "./chunks/chunk-GJU6BJJA.js";
6
+ } from "./chunks/chunk-XXOBCANT.js";
7
+ import "./chunks/chunk-CO6RGQAD.js";
8
+ import "./chunks/chunk-QD35GH4C.js";
9
+ import "./chunks/chunk-NXBW6KY6.js";
10
+ import "./chunks/chunk-SDI6BVG7.js";
11
+ import "./chunks/chunk-XR2HMGAS.js";
12
12
  import "./chunks/chunk-GJLZ2MKE.js";
13
13
  import "./chunks/chunk-MYLAJDKB.js";
14
- import "./chunks/chunk-C44YRP5F.js";
14
+ import "./chunks/chunk-5OJZV6YT.js";
15
15
  import "./chunks/chunk-UAFATXYA.js";
16
16
  import "./chunks/chunk-3GLG3ZLE.js";
17
- import "./chunks/chunk-TUQKGAK3.js";
18
- import "./chunks/chunk-NMWQUFPF.js";
17
+ import "./chunks/chunk-5WB7O7IT.js";
18
+ import "./chunks/chunk-SVVFWTG4.js";
19
19
  import "./chunks/chunk-HNWJ4B7S.js";
20
- import "./chunks/chunk-77EGQQJU.js";
21
- import "./chunks/chunk-QM7KEWWT.js";
22
- import "./chunks/chunk-CE6ZIKJX.js";
23
- import "./chunks/chunk-JQ52XYD2.js";
20
+ import "./chunks/chunk-BFUS3ENH.js";
21
+ import "./chunks/chunk-TXTSE44S.js";
22
+ import "./chunks/chunk-RLCYVZ4B.js";
23
+ import "./chunks/chunk-BVWMVWLJ.js";
24
24
  import "./chunks/chunk-LOCJN3BZ.js";
25
- import "./chunks/chunk-FRTYQQDI.js";
26
- import "./chunks/chunk-GM7M25NW.js";
27
- import "./chunks/chunk-D4ZFRBB4.js";
28
- import "./chunks/chunk-XSF4RQRP.js";
25
+ import "./chunks/chunk-EVXXFMZ7.js";
26
+ import "./chunks/chunk-2XEAITWM.js";
27
+ import "./chunks/chunk-JGHZ3N34.js";
29
28
  import "./chunks/chunk-G2FD7S3C.js";
29
+ import "./chunks/chunk-JGQQAUVL.js";
30
30
  import "./chunks/chunk-GQZVR5DW.js";
31
- import "./chunks/chunk-WA5WNP6V.js";
32
- import "./chunks/chunk-TZLEHZVC.js";
33
- import "./chunks/chunk-JDZ5GTZT.js";
34
- import "./chunks/chunk-M75QPZNJ.js";
35
- import "./chunks/chunk-3GP3KT5L.js";
36
- import "./chunks/chunk-CRCD3ODN.js";
37
- import "./chunks/chunk-EFD753MS.js";
38
- import "./chunks/chunk-REOWLPH4.js";
31
+ import "./chunks/chunk-OYCQVJYY.js";
32
+ import "./chunks/chunk-P5PBJONQ.js";
33
+ import "./chunks/chunk-MEVTV4FI.js";
34
+ import "./chunks/chunk-D3E7AXBB.js";
35
+ import "./chunks/chunk-BW2NMXRV.js";
36
+ import "./chunks/chunk-ZANALBSX.js";
37
+ import "./chunks/chunk-3FWNQNF7.js";
38
+ import "./chunks/chunk-7OTWJQGA.js";
39
+ import "./chunks/chunk-OPPVSPEF.js";
39
40
  import "./chunks/chunk-3PZSBNLI.js";
40
41
  import "./chunks/chunk-CKUVEHSS.js";
41
- import "./chunks/chunk-OPPVSPEF.js";
42
42
  import "./chunks/chunk-VPE4AYP7.js";
43
- import "./chunks/chunk-FFHJGWDK.js";
43
+ import "./chunks/chunk-2C5SATRZ.js";
44
44
  import "./chunks/chunk-QYBZZI5H.js";
45
- import "./chunks/chunk-5I3K4R2G.js";
46
- import "./chunks/chunk-B5ARSBOH.js";
47
- import "./chunks/chunk-B5X2RLJG.js";
45
+ import "./chunks/chunk-CFXXFHRK.js";
46
+ import "./chunks/chunk-W2YAW36J.js";
48
47
  import "./chunks/chunk-VX656OAZ.js";
49
- import "./chunks/chunk-234NFZS4.js";
48
+ import "./chunks/chunk-5ORP7EFJ.js";
50
49
  import "./chunks/chunk-DZR37KXT.js";
51
50
  import "./chunks/chunk-EIY2SKD3.js";
52
- import "./chunks/chunk-ZPZ7GNBT.js";
53
- import "./chunks/chunk-PFRQBCGC.js";
51
+ import "./chunks/chunk-T3H5ELLA.js";
54
52
  import "./chunks/chunk-HMXCN6PG.js";
55
53
  import "./chunks/chunk-AB35TJST.js";
56
- import "./chunks/chunk-BZFOFC4D.js";
54
+ import "./chunks/chunk-2VMKQKVO.js";
57
55
  import "./chunks/chunk-HKYXWZQS.js";
58
56
  import "./chunks/chunk-34BOZKIE.js";
59
57
  import "./chunks/chunk-JKJWSY4V.js";
60
- import "./chunks/chunk-CGMSKIEO.js";
61
- import "./chunks/chunk-UBQSRCWR.js";
58
+ import "./chunks/chunk-DV5B5UU7.js";
59
+ import "./chunks/chunk-3YBP46PB.js";
60
+ import "./chunks/chunk-VACK24HF.js";
62
61
  import "./chunks/chunk-CPMHA4W5.js";
62
+ import "./chunks/chunk-ZPZ7GNBT.js";
63
63
  import "./chunks/chunk-BSOZW3FC.js";
64
64
  import "./chunks/chunk-RJWPJCIB.js";
65
65
  import "./chunks/chunk-HOAIOEI7.js";
66
- import "./chunks/chunk-TGUFT6KK.js";
67
- import "./chunks/chunk-4XWZNPQ2.js";
66
+ import "./chunks/chunk-BLUEFYIR.js";
67
+ import "./chunks/chunk-2JL2JVZ2.js";
68
68
  export {
69
69
  figureData,
70
70
  gfaFigureData,