@jbrowse/bandage-core 11.4.0 → 11.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (142) hide show
  1. package/dist/alleleProjection/projectAlleles.js +1 -1
  2. package/dist/bubbles/bubbleHalos.js +9 -6
  3. package/dist/bubbles/classifyBubble.js +8 -5
  4. package/dist/bubbles/popBubble.js +3 -3
  5. package/dist/bubbles/superbubbles.js +11 -11
  6. package/dist/chunks/{chunk-FFHJGWDK.js → chunk-2C5SATRZ.js} +5 -5
  7. package/dist/chunks/{chunk-4XWZNPQ2.js → chunk-2JL2JVZ2.js} +1 -1
  8. package/dist/chunks/{chunk-BZFOFC4D.js → chunk-2VMKQKVO.js} +17 -7
  9. package/dist/chunks/{chunk-GM7M25NW.js → chunk-2XEAITWM.js} +15 -5
  10. package/dist/chunks/{chunk-7BTO7MZS.js → chunk-376YFQOY.js} +2 -2
  11. package/dist/chunks/{chunk-EFD753MS.js → chunk-3FWNQNF7.js} +1 -1
  12. package/dist/chunks/{chunk-B5X2RLJG.js → chunk-3YBP46PB.js} +27 -2
  13. package/dist/chunks/{chunk-EJRJAAN7.js → chunk-4DMSPNYV.js} +47 -27
  14. package/dist/chunks/{chunk-I4BYUNJN.js → chunk-4WXFQOYV.js} +5 -5
  15. package/dist/chunks/{chunk-OMUPUB4J.js → chunk-56L6R6D2.js} +2 -2
  16. package/dist/chunks/{chunk-C44YRP5F.js → chunk-5OJZV6YT.js} +3 -2
  17. package/dist/chunks/{chunk-234NFZS4.js → chunk-5ORP7EFJ.js} +1 -1
  18. package/dist/chunks/{chunk-TUQKGAK3.js → chunk-5WB7O7IT.js} +4 -4
  19. package/dist/chunks/{chunk-3VCKBSML.js → chunk-6YRSOL4K.js} +2 -2
  20. package/dist/chunks/{chunk-REOWLPH4.js → chunk-7OTWJQGA.js} +13 -13
  21. package/dist/chunks/{chunk-77EGQQJU.js → chunk-BFUS3ENH.js} +2 -2
  22. package/dist/chunks/{chunk-TGUFT6KK.js → chunk-BLUEFYIR.js} +4 -1
  23. package/dist/chunks/{chunk-JQ52XYD2.js → chunk-BVWMVWLJ.js} +12 -12
  24. package/dist/chunks/{chunk-3GP3KT5L.js → chunk-BW2NMXRV.js} +5 -5
  25. package/dist/chunks/{chunk-2Q22S52W.js → chunk-C6E6HXP5.js} +8 -8
  26. package/dist/chunks/{chunk-5I3K4R2G.js → chunk-CFXXFHRK.js} +2 -1
  27. package/dist/chunks/{chunk-JMABOQWL.js → chunk-CO6RGQAD.js} +1 -6
  28. package/dist/chunks/{chunk-M75QPZNJ.js → chunk-D3E7AXBB.js} +68 -26
  29. package/dist/chunks/{chunk-CGMSKIEO.js → chunk-DV5B5UU7.js} +55 -8
  30. package/dist/chunks/{chunk-G6UIYQZR.js → chunk-EQDQ7P4Y.js} +3 -2
  31. package/dist/chunks/{chunk-FRTYQQDI.js → chunk-EVXXFMZ7.js} +9 -9
  32. package/dist/chunks/{chunk-BXLLMWC3.js → chunk-F3KQQDKP.js} +1 -1
  33. package/dist/chunks/{chunk-6EOB6ANX.js → chunk-GZ36HNPJ.js} +1 -1
  34. package/dist/chunks/{chunk-3HGYGISG.js → chunk-HV35LDYH.js} +3 -3
  35. package/dist/chunks/{chunk-XSF4RQRP.js → chunk-JGHZ3N34.js} +22 -15
  36. package/dist/chunks/{chunk-D4ZFRBB4.js → chunk-JGQQAUVL.js} +3 -3
  37. package/dist/chunks/{chunk-PSCSZSVK.js → chunk-KA4F3N55.js} +4 -4
  38. package/dist/chunks/{chunk-SOMZGDVS.js → chunk-KJDERUQF.js} +1 -1
  39. package/dist/chunks/{chunk-E4ZM4OOJ.js → chunk-KZMSSPS6.js} +2 -2
  40. package/dist/chunks/{chunk-JDZ5GTZT.js → chunk-MEVTV4FI.js} +1 -1
  41. package/dist/chunks/{chunk-PNMJFFNB.js → chunk-MHZTTLBU.js} +1 -1
  42. package/dist/chunks/{chunk-VIQL7GZ4.js → chunk-MXLYBDOX.js} +14 -13
  43. package/dist/chunks/{chunk-3LZ334X4.js → chunk-NXBW6KY6.js} +6 -7
  44. package/dist/chunks/{chunk-7O7EGTYG.js → chunk-OUM54ZSQ.js} +2 -2
  45. package/dist/chunks/{chunk-WA5WNP6V.js → chunk-OYCQVJYY.js} +1 -1
  46. package/dist/chunks/{chunk-TZLEHZVC.js → chunk-P5PBJONQ.js} +1 -1
  47. package/dist/chunks/chunk-PQIFYQVI.js +21 -0
  48. package/dist/chunks/{chunk-6VVGFQ7S.js → chunk-QCOVHLJO.js} +1 -1
  49. package/dist/chunks/{chunk-TEXAKEJX.js → chunk-QD35GH4C.js} +3 -3
  50. package/dist/chunks/{chunk-CE6ZIKJX.js → chunk-RLCYVZ4B.js} +1 -1
  51. package/dist/chunks/{chunk-6YJESZND.js → chunk-ROLACYCO.js} +20 -20
  52. package/dist/chunks/{chunk-A7H753BA.js → chunk-SDI6BVG7.js} +5 -6
  53. package/dist/chunks/{chunk-A4JDEUAI.js → chunk-SNF2MIEF.js} +1 -1
  54. package/dist/chunks/{chunk-NMWQUFPF.js → chunk-SVVFWTG4.js} +2 -2
  55. package/dist/chunks/{chunk-PFRQBCGC.js → chunk-T3H5ELLA.js} +4 -4
  56. package/dist/chunks/{chunk-QM7KEWWT.js → chunk-TXTSE44S.js} +1 -1
  57. package/dist/chunks/{chunk-UBQSRCWR.js → chunk-VACK24HF.js} +43 -3
  58. package/dist/chunks/{chunk-HSVFCA2J.js → chunk-VO6FKNZE.js} +1 -1
  59. package/dist/chunks/{chunk-B5ARSBOH.js → chunk-W2YAW36J.js} +8 -7
  60. package/dist/chunks/{chunk-TJOOHTJ6.js → chunk-WI6SUU5B.js} +2 -2
  61. package/dist/chunks/{chunk-GJU6BJJA.js → chunk-XR2HMGAS.js} +1 -1
  62. package/dist/chunks/{chunk-N7G5ROIV.js → chunk-XXOBCANT.js} +26 -12
  63. package/dist/chunks/{chunk-G3I4TCEZ.js → chunk-YEYQFNFQ.js} +1 -1
  64. package/dist/chunks/{chunk-UFUSPK2A.js → chunk-YYIU7P73.js} +4 -1
  65. package/dist/chunks/{chunk-CRCD3ODN.js → chunk-ZANALBSX.js} +11 -3
  66. package/dist/cli/figure.js +52 -47
  67. package/dist/cli/fold.js +12 -12
  68. package/dist/deletionEdges.js +5 -2
  69. package/dist/facetGrid.js +2 -2
  70. package/dist/figure.js +36 -36
  71. package/dist/figureData.js +38 -38
  72. package/dist/figureScene.js +26 -26
  73. package/dist/figureSettings.js +12 -12
  74. package/dist/foldVariants.js +2 -2
  75. package/dist/gaf/parseGaf.js +1 -1
  76. package/dist/gbzCut.js +4 -4
  77. package/dist/gbzWindow.js +3 -3
  78. package/dist/genes/backboneGenes.js +4 -4
  79. package/dist/genes/geneFiles.js +1 -1
  80. package/dist/genes/genePins.js +3 -3
  81. package/dist/gfa/gfaConverter.js +4 -4
  82. package/dist/gfa/graphTables.js +2 -2
  83. package/dist/gfa-core/gfaParser.js +1 -1
  84. package/dist/gfa-core/index.js +1 -1
  85. package/dist/graphLabels.js +7 -4
  86. package/dist/index.js +96 -90
  87. package/dist/labelLayout.js +11 -8
  88. package/dist/layout/anchoredLayout.js +1 -1
  89. package/dist/layout/forceCache.js +12 -12
  90. package/dist/layout/mergeRuns.js +2 -2
  91. package/dist/layout/placeOffReference.js +1 -1
  92. package/dist/layout/sampleRowLayout.js +2 -2
  93. package/dist/layout/trimToWindow.js +2 -2
  94. package/dist/layout/tubeMapLayout.js +14 -14
  95. package/dist/layout/walkRowDraw.js +12 -12
  96. package/dist/layout/walkRowLayout.js +7 -7
  97. package/dist/layout/walkRowLinks.js +1 -1
  98. package/dist/layout/walkRowRuns.js +4 -4
  99. package/dist/layout/walkRows.js +5 -5
  100. package/dist/layout/walkStrip.js +17 -17
  101. package/dist/layoutEngines.js +1 -1
  102. package/dist/layoutModes.js +17 -17
  103. package/dist/locus.js +8 -0
  104. package/dist/nodeWidths.js +5 -3
  105. package/dist/pansn.js +1 -1
  106. package/dist/pathAnchoring.js +4 -2
  107. package/dist/pathColors.js +8 -8
  108. package/dist/pipeline.js +11 -11
  109. package/dist/reference.js +2 -2
  110. package/dist/referenceStrip.js +12 -12
  111. package/dist/renderer/Canvas2DRenderer.js +1 -1
  112. package/dist/renderer/GeometryBuilder.js +15 -13
  113. package/dist/tubeMap/axis.js +8 -5
  114. package/dist/tubeMap/bundle.js +15 -15
  115. package/dist/tubeMap/coarsen.js +15 -15
  116. package/dist/tubeMap/deviations.js +18 -18
  117. package/dist/tubeMap/draw.js +10 -8
  118. package/dist/tubeMap/genes.js +9 -6
  119. package/dist/tubeMap/nodeColors.js +12 -12
  120. package/dist/tubeMap/reads.js +4 -4
  121. package/dist/types/figureData.d.ts +12 -0
  122. package/dist/types/gaf/parseGaf.d.ts +1 -1
  123. package/dist/types/gfa/graphTables.d.ts +3 -2
  124. package/dist/types/index.d.ts +1 -0
  125. package/dist/types/locus.d.ts +10 -0
  126. package/dist/types/nodeWidths.d.ts +2 -1
  127. package/dist/types/pathAnchoring.d.ts +2 -0
  128. package/dist/types/renderer/Canvas2DRenderer.d.ts +2 -0
  129. package/dist/types/renderer/GeometryBuilder.d.ts +1 -0
  130. package/dist/types/tubeMap/reads.d.ts +0 -1
  131. package/dist/types/util/geometry.d.ts +7 -1
  132. package/dist/types/version.d.ts +1 -1
  133. package/dist/util/SpatialIndex.js +7 -4
  134. package/dist/util/edgeCurves.js +6 -3
  135. package/dist/util/geometry.js +1 -1
  136. package/dist/util/hitDetection.js +8 -5
  137. package/dist/version.js +1 -1
  138. package/dist/viewport.js +12 -12
  139. package/dist/walkEncoding.js +12 -12
  140. package/dist/walkHighlight.js +13 -13
  141. package/dist/walkKey.js +8 -5
  142. package/package.json +1 -1
package/dist/layout/walkRowLayout.js CHANGED
@@ -5,18 +5,18 @@ import {
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  walkRowLayout,
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  walkRowLayoutOf,
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  walkRowsExtent
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- } from "../chunks/chunk-TZLEHZVC.js";
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- import "../chunks/chunk-JDZ5GTZT.js";
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- import "../chunks/chunk-M75QPZNJ.js";
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- import "../chunks/chunk-B5ARSBOH.js";
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- import "../chunks/chunk-B5X2RLJG.js";
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+ } from "../chunks/chunk-P5PBJONQ.js";
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+ import "../chunks/chunk-MEVTV4FI.js";
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+ import "../chunks/chunk-D3E7AXBB.js";
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+ import "../chunks/chunk-W2YAW36J.js";
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  import "../chunks/chunk-EIY2SKD3.js";
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- import "../chunks/chunk-ZPZ7GNBT.js";
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+ import "../chunks/chunk-3YBP46PB.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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+ import "../chunks/chunk-ZPZ7GNBT.js";
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  import "../chunks/chunk-BSOZW3FC.js";
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  import "../chunks/chunk-RJWPJCIB.js";
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  import "../chunks/chunk-HOAIOEI7.js";
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- import "../chunks/chunk-4XWZNPQ2.js";
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+ import "../chunks/chunk-2JL2JVZ2.js";
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  export {
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  READOUT_ROOM,
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  longestBar,
package/dist/layout/walkRowLinks.js CHANGED
@@ -3,7 +3,7 @@ import {
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  sharedRowOrder,
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  walkRowBlocks,
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  walkRowLinks
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- } from "../chunks/chunk-UFUSPK2A.js";
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+ } from "../chunks/chunk-YYIU7P73.js";
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  export {
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  ribbonJoin,
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  sharedRowOrder,
package/dist/layout/walkRowRuns.js CHANGED
@@ -3,15 +3,15 @@ import {
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  runAt,
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  walkRowRuns,
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  walkRowsOf
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- } from "../chunks/chunk-M75QPZNJ.js";
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- import "../chunks/chunk-B5ARSBOH.js";
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- import "../chunks/chunk-B5X2RLJG.js";
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+ } from "../chunks/chunk-D3E7AXBB.js";
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+ import "../chunks/chunk-W2YAW36J.js";
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  import "../chunks/chunk-EIY2SKD3.js";
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+ import "../chunks/chunk-3YBP46PB.js";
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  import "../chunks/chunk-ZPZ7GNBT.js";
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  import "../chunks/chunk-BSOZW3FC.js";
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  import "../chunks/chunk-RJWPJCIB.js";
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  import "../chunks/chunk-HOAIOEI7.js";
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- import "../chunks/chunk-4XWZNPQ2.js";
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+ import "../chunks/chunk-2JL2JVZ2.js";
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  export {
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  referenceWalkName,
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  runAt,
package/dist/layout/walkRows.js CHANGED
@@ -1,18 +1,18 @@
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  import {
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  filterSamples,
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  walkRows
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- } from "../chunks/chunk-JDZ5GTZT.js";
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+ } from "../chunks/chunk-MEVTV4FI.js";
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  import {
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  referenceWalkName
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- } from "../chunks/chunk-M75QPZNJ.js";
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- import "../chunks/chunk-B5ARSBOH.js";
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- import "../chunks/chunk-B5X2RLJG.js";
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+ } from "../chunks/chunk-D3E7AXBB.js";
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+ import "../chunks/chunk-W2YAW36J.js";
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  import "../chunks/chunk-EIY2SKD3.js";
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+ import "../chunks/chunk-3YBP46PB.js";
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  import "../chunks/chunk-ZPZ7GNBT.js";
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  import "../chunks/chunk-BSOZW3FC.js";
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  import "../chunks/chunk-RJWPJCIB.js";
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  import "../chunks/chunk-HOAIOEI7.js";
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- import "../chunks/chunk-4XWZNPQ2.js";
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+ import "../chunks/chunk-2JL2JVZ2.js";
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  export {
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  filterSamples,
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  referenceWalkName,
package/dist/layout/walkStrip.js CHANGED
@@ -9,36 +9,36 @@ import {
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  walkStripApplies,
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  walkStripFrame,
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  walkStripLabelsTree
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- } from "../chunks/chunk-I4BYUNJN.js";
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+ } from "../chunks/chunk-4WXFQOYV.js";
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  import {
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  LABELLED_ROW_PX
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- } from "../chunks/chunk-VIQL7GZ4.js";
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+ } from "../chunks/chunk-MXLYBDOX.js";
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  import "../chunks/chunk-H2H4Y3TV.js";
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- import "../chunks/chunk-XSF4RQRP.js";
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+ import "../chunks/chunk-JGHZ3N34.js";
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  import "../chunks/chunk-G2FD7S3C.js";
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  import "../chunks/chunk-GQZVR5DW.js";
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- import "../chunks/chunk-WA5WNP6V.js";
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- import "../chunks/chunk-TZLEHZVC.js";
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- import "../chunks/chunk-JDZ5GTZT.js";
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- import "../chunks/chunk-M75QPZNJ.js";
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- import "../chunks/chunk-3GP3KT5L.js";
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- import "../chunks/chunk-CRCD3ODN.js";
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- import "../chunks/chunk-B5ARSBOH.js";
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- import "../chunks/chunk-B5X2RLJG.js";
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+ import "../chunks/chunk-OYCQVJYY.js";
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+ import "../chunks/chunk-P5PBJONQ.js";
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+ import "../chunks/chunk-MEVTV4FI.js";
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+ import "../chunks/chunk-D3E7AXBB.js";
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+ import "../chunks/chunk-BW2NMXRV.js";
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+ import "../chunks/chunk-ZANALBSX.js";
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+ import "../chunks/chunk-W2YAW36J.js";
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  import "../chunks/chunk-VX656OAZ.js";
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  import "../chunks/chunk-EIY2SKD3.js";
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- import "../chunks/chunk-ZPZ7GNBT.js";
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- import "../chunks/chunk-PFRQBCGC.js";
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+ import "../chunks/chunk-T3H5ELLA.js";
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  import "../chunks/chunk-HMXCN6PG.js";
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  import "../chunks/chunk-AB35TJST.js";
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- import "../chunks/chunk-BZFOFC4D.js";
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- import "../chunks/chunk-CGMSKIEO.js";
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- import "../chunks/chunk-UBQSRCWR.js";
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+ import "../chunks/chunk-2VMKQKVO.js";
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+ import "../chunks/chunk-DV5B5UU7.js";
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+ import "../chunks/chunk-3YBP46PB.js";
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+ import "../chunks/chunk-VACK24HF.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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+ import "../chunks/chunk-ZPZ7GNBT.js";
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  import "../chunks/chunk-BSOZW3FC.js";
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  import "../chunks/chunk-RJWPJCIB.js";
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  import "../chunks/chunk-HOAIOEI7.js";
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- import "../chunks/chunk-4XWZNPQ2.js";
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+ import "../chunks/chunk-2JL2JVZ2.js";
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  export {
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  LABELLED_ROW_PX,
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  WALK_STRIP_CEILING_PX,
package/dist/layoutEngines.js CHANGED
@@ -3,7 +3,7 @@ import {
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  LAYOUT_ENGINE_VALUES,
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  isLayoutEngineKind,
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  layoutEngine
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- } from "./chunks/chunk-JMABOQWL.js";
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+ } from "./chunks/chunk-CO6RGQAD.js";
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  export {
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  LAYOUT_ENGINES,
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  LAYOUT_ENGINE_VALUES,
package/dist/layoutModes.js CHANGED
@@ -4,35 +4,35 @@ import {
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  LAYOUT_MODE_VALUES,
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  layoutModeByValue,
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  modeUsesLayoutEngine
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- } from "./chunks/chunk-TEXAKEJX.js";
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- import "./chunks/chunk-3LZ334X4.js";
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- import "./chunks/chunk-A7H753BA.js";
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- import "./chunks/chunk-GJU6BJJA.js";
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+ } from "./chunks/chunk-QD35GH4C.js";
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+ import "./chunks/chunk-NXBW6KY6.js";
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+ import "./chunks/chunk-SDI6BVG7.js";
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+ import "./chunks/chunk-XR2HMGAS.js";
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  import "./chunks/chunk-GJLZ2MKE.js";
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  import "./chunks/chunk-MYLAJDKB.js";
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- import "./chunks/chunk-C44YRP5F.js";
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+ import "./chunks/chunk-5OJZV6YT.js";
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  import "./chunks/chunk-UAFATXYA.js";
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  import "./chunks/chunk-3GLG3ZLE.js";
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- import "./chunks/chunk-TZLEHZVC.js";
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- import "./chunks/chunk-JDZ5GTZT.js";
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- import "./chunks/chunk-M75QPZNJ.js";
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- import "./chunks/chunk-3GP3KT5L.js";
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- import "./chunks/chunk-B5ARSBOH.js";
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- import "./chunks/chunk-B5X2RLJG.js";
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+ import "./chunks/chunk-P5PBJONQ.js";
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+ import "./chunks/chunk-MEVTV4FI.js";
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+ import "./chunks/chunk-D3E7AXBB.js";
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+ import "./chunks/chunk-BW2NMXRV.js";
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+ import "./chunks/chunk-W2YAW36J.js";
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  import "./chunks/chunk-VX656OAZ.js";
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  import "./chunks/chunk-EIY2SKD3.js";
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- import "./chunks/chunk-ZPZ7GNBT.js";
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- import "./chunks/chunk-PFRQBCGC.js";
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+ import "./chunks/chunk-T3H5ELLA.js";
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  import "./chunks/chunk-HMXCN6PG.js";
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  import "./chunks/chunk-AB35TJST.js";
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- import "./chunks/chunk-BZFOFC4D.js";
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- import "./chunks/chunk-CGMSKIEO.js";
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- import "./chunks/chunk-UBQSRCWR.js";
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+ import "./chunks/chunk-2VMKQKVO.js";
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+ import "./chunks/chunk-DV5B5UU7.js";
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+ import "./chunks/chunk-3YBP46PB.js";
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+ import "./chunks/chunk-VACK24HF.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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+ import "./chunks/chunk-ZPZ7GNBT.js";
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  import "./chunks/chunk-BSOZW3FC.js";
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  import "./chunks/chunk-RJWPJCIB.js";
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- import "./chunks/chunk-4XWZNPQ2.js";
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+ import "./chunks/chunk-2JL2JVZ2.js";
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  export {
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  FORCE_LAYOUT_LABEL,
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  LAYOUT_MODES,
package/dist/locus.js ADDED
@@ -0,0 +1,8 @@
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+ import {
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+ formatLocus,
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+ parseLocus
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+ } from "./chunks/chunk-PQIFYQVI.js";
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+ export {
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+ formatLocus,
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+ parseLocus
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+ };
package/dist/nodeWidths.js CHANGED
@@ -3,12 +3,14 @@ import {
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  maxNodeWidthPx,
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  meanDepth,
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  nodeInk,
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- nodeWidthPx
7
- } from "./chunks/chunk-CRCD3ODN.js";
6
+ nodeWidthPx,
7
+ walkLaneWidthPx
8
+ } from "./chunks/chunk-ZANALBSX.js";
8
9
  export {
9
10
  NODE_WIDTHS,
10
11
  maxNodeWidthPx,
11
12
  meanDepth,
12
13
  nodeInk,
13
- nodeWidthPx
14
+ nodeWidthPx,
15
+ walkLaneWidthPx
14
16
  };
package/dist/pansn.js CHANGED
@@ -8,7 +8,7 @@ import {
8
8
  panSNSample,
9
9
  parsePanSN,
10
10
  resolvePanSNPrefix
11
- } from "./chunks/chunk-4XWZNPQ2.js";
11
+ } from "./chunks/chunk-2JL2JVZ2.js";
12
12
  export {
13
13
  assemblyByPanSNPrefix,
14
14
  isGenericSample,
package/dist/pathAnchoring.js CHANGED
@@ -3,19 +3,21 @@ import {
3
3
  anchorGraph,
4
4
  chooseReferencePath,
5
5
  pathOrigin,
6
+ referenceVisitStarts,
6
7
  surveyPaths,
7
8
  trimOrigins
8
- } from "./chunks/chunk-B5X2RLJG.js";
9
+ } from "./chunks/chunk-3YBP46PB.js";
9
10
  import "./chunks/chunk-ZPZ7GNBT.js";
10
11
  import "./chunks/chunk-BSOZW3FC.js";
11
12
  import "./chunks/chunk-RJWPJCIB.js";
12
13
  import "./chunks/chunk-HOAIOEI7.js";
13
- import "./chunks/chunk-4XWZNPQ2.js";
14
+ import "./chunks/chunk-2JL2JVZ2.js";
14
15
  export {
15
16
  anchorFromPaths,
16
17
  anchorGraph,
17
18
  chooseReferencePath,
18
19
  pathOrigin,
20
+ referenceVisitStarts,
19
21
  surveyPaths,
20
22
  trimOrigins
21
23
  };
package/dist/pathColors.js CHANGED
@@ -9,20 +9,20 @@ import {
9
9
  pathHueAt,
10
10
  pathLegend,
11
11
  walkLabelsOf
12
- } from "./chunks/chunk-3GP3KT5L.js";
13
- import "./chunks/chunk-B5X2RLJG.js";
14
- import "./chunks/chunk-ZPZ7GNBT.js";
15
- import "./chunks/chunk-PFRQBCGC.js";
12
+ } from "./chunks/chunk-BW2NMXRV.js";
13
+ import "./chunks/chunk-T3H5ELLA.js";
16
14
  import "./chunks/chunk-HMXCN6PG.js";
17
15
  import "./chunks/chunk-AB35TJST.js";
18
- import "./chunks/chunk-BZFOFC4D.js";
19
- import "./chunks/chunk-CGMSKIEO.js";
20
- import "./chunks/chunk-UBQSRCWR.js";
16
+ import "./chunks/chunk-2VMKQKVO.js";
17
+ import "./chunks/chunk-DV5B5UU7.js";
18
+ import "./chunks/chunk-3YBP46PB.js";
19
+ import "./chunks/chunk-VACK24HF.js";
21
20
  import "./chunks/chunk-CPMHA4W5.js";
21
+ import "./chunks/chunk-ZPZ7GNBT.js";
22
22
  import "./chunks/chunk-BSOZW3FC.js";
23
23
  import "./chunks/chunk-RJWPJCIB.js";
24
24
  import "./chunks/chunk-HOAIOEI7.js";
25
- import "./chunks/chunk-4XWZNPQ2.js";
25
+ import "./chunks/chunk-2JL2JVZ2.js";
26
26
  export {
27
27
  MAX_PATH_COLORS,
28
28
  PATH_LIGHTNESS,
package/dist/pipeline.js CHANGED
@@ -11,30 +11,30 @@ import {
11
11
  forceLayout,
12
12
  layoutExtent,
13
13
  loadGraph
14
- } from "./chunks/chunk-REOWLPH4.js";
14
+ } from "./chunks/chunk-7OTWJQGA.js";
15
+ import "./chunks/chunk-OPPVSPEF.js";
15
16
  import "./chunks/chunk-3PZSBNLI.js";
16
17
  import "./chunks/chunk-CKUVEHSS.js";
17
- import "./chunks/chunk-OPPVSPEF.js";
18
18
  import "./chunks/chunk-VPE4AYP7.js";
19
- import "./chunks/chunk-FFHJGWDK.js";
19
+ import "./chunks/chunk-2C5SATRZ.js";
20
20
  import "./chunks/chunk-QYBZZI5H.js";
21
- import "./chunks/chunk-5I3K4R2G.js";
22
- import "./chunks/chunk-B5ARSBOH.js";
23
- import "./chunks/chunk-B5X2RLJG.js";
21
+ import "./chunks/chunk-CFXXFHRK.js";
22
+ import "./chunks/chunk-W2YAW36J.js";
24
23
  import "./chunks/chunk-VX656OAZ.js";
25
24
  import "./chunks/chunk-DZR37KXT.js";
26
25
  import "./chunks/chunk-EIY2SKD3.js";
27
- import "./chunks/chunk-ZPZ7GNBT.js";
28
- import "./chunks/chunk-BZFOFC4D.js";
26
+ import "./chunks/chunk-2VMKQKVO.js";
29
27
  import "./chunks/chunk-HKYXWZQS.js";
30
28
  import "./chunks/chunk-34BOZKIE.js";
31
- import "./chunks/chunk-CGMSKIEO.js";
32
- import "./chunks/chunk-UBQSRCWR.js";
29
+ import "./chunks/chunk-DV5B5UU7.js";
30
+ import "./chunks/chunk-3YBP46PB.js";
31
+ import "./chunks/chunk-VACK24HF.js";
33
32
  import "./chunks/chunk-CPMHA4W5.js";
33
+ import "./chunks/chunk-ZPZ7GNBT.js";
34
34
  import "./chunks/chunk-BSOZW3FC.js";
35
35
  import "./chunks/chunk-RJWPJCIB.js";
36
36
  import "./chunks/chunk-HOAIOEI7.js";
37
- import "./chunks/chunk-4XWZNPQ2.js";
37
+ import "./chunks/chunk-2JL2JVZ2.js";
38
38
  export {
39
39
  ENGINE_DEFAULTS,
40
40
  FIT_PADDING,
package/dist/reference.js CHANGED
@@ -8,11 +8,11 @@ import {
8
8
  refNameBinding,
9
9
  referenceLabel,
10
10
  wellKnownSample
11
- } from "./chunks/chunk-234NFZS4.js";
11
+ } from "./chunks/chunk-5ORP7EFJ.js";
12
12
  import "./chunks/chunk-BSOZW3FC.js";
13
13
  import "./chunks/chunk-RJWPJCIB.js";
14
14
  import "./chunks/chunk-HOAIOEI7.js";
15
- import "./chunks/chunk-4XWZNPQ2.js";
15
+ import "./chunks/chunk-2JL2JVZ2.js";
16
16
  export {
17
17
  WELL_KNOWN_SAMPLES,
18
18
  assemblyWalk,
package/dist/referenceStrip.js CHANGED
@@ -7,27 +7,27 @@ import {
7
7
  stripBlockAt,
8
8
  stripOverhang,
9
9
  stripPixels
10
- } from "./chunks/chunk-6VVGFQ7S.js";
11
- import "./chunks/chunk-XSF4RQRP.js";
10
+ } from "./chunks/chunk-QCOVHLJO.js";
11
+ import "./chunks/chunk-JGHZ3N34.js";
12
12
  import "./chunks/chunk-G2FD7S3C.js";
13
13
  import "./chunks/chunk-GQZVR5DW.js";
14
- import "./chunks/chunk-WA5WNP6V.js";
15
- import "./chunks/chunk-3GP3KT5L.js";
16
- import "./chunks/chunk-CRCD3ODN.js";
17
- import "./chunks/chunk-B5X2RLJG.js";
14
+ import "./chunks/chunk-OYCQVJYY.js";
15
+ import "./chunks/chunk-BW2NMXRV.js";
16
+ import "./chunks/chunk-ZANALBSX.js";
18
17
  import "./chunks/chunk-VX656OAZ.js";
19
- import "./chunks/chunk-ZPZ7GNBT.js";
20
- import "./chunks/chunk-PFRQBCGC.js";
18
+ import "./chunks/chunk-T3H5ELLA.js";
21
19
  import "./chunks/chunk-HMXCN6PG.js";
22
20
  import "./chunks/chunk-AB35TJST.js";
23
- import "./chunks/chunk-BZFOFC4D.js";
24
- import "./chunks/chunk-CGMSKIEO.js";
25
- import "./chunks/chunk-UBQSRCWR.js";
21
+ import "./chunks/chunk-2VMKQKVO.js";
22
+ import "./chunks/chunk-DV5B5UU7.js";
23
+ import "./chunks/chunk-3YBP46PB.js";
24
+ import "./chunks/chunk-VACK24HF.js";
26
25
  import "./chunks/chunk-CPMHA4W5.js";
26
+ import "./chunks/chunk-ZPZ7GNBT.js";
27
27
  import "./chunks/chunk-BSOZW3FC.js";
28
28
  import "./chunks/chunk-RJWPJCIB.js";
29
29
  import "./chunks/chunk-HOAIOEI7.js";
30
- import "./chunks/chunk-4XWZNPQ2.js";
30
+ import "./chunks/chunk-2JL2JVZ2.js";
31
31
  export {
32
32
  REFERENCE_STRIP_PX,
33
33
  REFERENCE_STRIP_ZONE_PX,
package/dist/renderer/Canvas2DRenderer.js CHANGED
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  Canvas2DRenderer,
3
3
  arrowheadOutline
4
- } from "../chunks/chunk-EJRJAAN7.js";
4
+ } from "../chunks/chunk-4DMSPNYV.js";
5
5
  import "../chunks/chunk-RBCE2OQH.js";
6
6
  import "../chunks/chunk-G2FD7S3C.js";
7
7
  export {
package/dist/renderer/GeometryBuilder.js CHANGED
@@ -9,29 +9,30 @@ import {
9
9
  computeReferenceRamp,
10
10
  endTangent,
11
11
  getNodeColor,
12
- hslToRgb
13
- } from "../chunks/chunk-XSF4RQRP.js";
12
+ hslToRgb,
13
+ rampFraction
14
+ } from "../chunks/chunk-JGHZ3N34.js";
14
15
  import "../chunks/chunk-G2FD7S3C.js";
15
16
  import {
16
17
  REFERENCE_RAMP_MAX_HUE
17
18
  } from "../chunks/chunk-GQZVR5DW.js";
18
- import "../chunks/chunk-WA5WNP6V.js";
19
- import "../chunks/chunk-3GP3KT5L.js";
20
- import "../chunks/chunk-CRCD3ODN.js";
21
- import "../chunks/chunk-B5X2RLJG.js";
19
+ import "../chunks/chunk-OYCQVJYY.js";
20
+ import "../chunks/chunk-BW2NMXRV.js";
21
+ import "../chunks/chunk-ZANALBSX.js";
22
22
  import "../chunks/chunk-VX656OAZ.js";
23
- import "../chunks/chunk-ZPZ7GNBT.js";
24
- import "../chunks/chunk-PFRQBCGC.js";
23
+ import "../chunks/chunk-T3H5ELLA.js";
25
24
  import "../chunks/chunk-HMXCN6PG.js";
26
25
  import "../chunks/chunk-AB35TJST.js";
27
- import "../chunks/chunk-BZFOFC4D.js";
28
- import "../chunks/chunk-CGMSKIEO.js";
29
- import "../chunks/chunk-UBQSRCWR.js";
26
+ import "../chunks/chunk-2VMKQKVO.js";
27
+ import "../chunks/chunk-DV5B5UU7.js";
28
+ import "../chunks/chunk-3YBP46PB.js";
29
+ import "../chunks/chunk-VACK24HF.js";
30
30
  import "../chunks/chunk-CPMHA4W5.js";
31
+ import "../chunks/chunk-ZPZ7GNBT.js";
31
32
  import "../chunks/chunk-BSOZW3FC.js";
32
33
  import "../chunks/chunk-RJWPJCIB.js";
33
34
  import "../chunks/chunk-HOAIOEI7.js";
34
- import "../chunks/chunk-4XWZNPQ2.js";
35
+ import "../chunks/chunk-2JL2JVZ2.js";
35
36
  export {
36
37
  FADED_ALPHA,
37
38
  LIFT_BACKDROP_COLOR,
@@ -44,5 +45,6 @@ export {
44
45
  computeReferenceRamp,
45
46
  endTangent,
46
47
  getNodeColor,
47
- hslToRgb
48
+ hslToRgb,
49
+ rampFraction
48
50
  };
package/dist/tubeMap/axis.js CHANGED
@@ -7,17 +7,20 @@ import {
7
7
  rulerMarks,
8
8
  tubeSpan,
9
9
  tubeX
10
- } from "../chunks/chunk-HSVFCA2J.js";
11
- import "../chunks/chunk-PFRQBCGC.js";
10
+ } from "../chunks/chunk-VO6FKNZE.js";
11
+ import "../chunks/chunk-T3H5ELLA.js";
12
12
  import "../chunks/chunk-HMXCN6PG.js";
13
13
  import "../chunks/chunk-AB35TJST.js";
14
- import "../chunks/chunk-BZFOFC4D.js";
15
- import "../chunks/chunk-CGMSKIEO.js";
16
- import "../chunks/chunk-UBQSRCWR.js";
14
+ import "../chunks/chunk-2VMKQKVO.js";
15
+ import "../chunks/chunk-DV5B5UU7.js";
16
+ import "../chunks/chunk-3YBP46PB.js";
17
+ import "../chunks/chunk-VACK24HF.js";
17
18
  import "../chunks/chunk-CPMHA4W5.js";
19
+ import "../chunks/chunk-ZPZ7GNBT.js";
18
20
  import "../chunks/chunk-BSOZW3FC.js";
19
21
  import "../chunks/chunk-RJWPJCIB.js";
20
22
  import "../chunks/chunk-HOAIOEI7.js";
23
+ import "../chunks/chunk-2JL2JVZ2.js";
21
24
  export {
22
25
  boxX,
23
26
  drawTubeMapRuler,
package/dist/tubeMap/bundle.js CHANGED
@@ -1,27 +1,27 @@
1
1
  import {
2
2
  bundleRoutes
3
- } from "../chunks/chunk-TJOOHTJ6.js";
4
- import "../chunks/chunk-3LZ334X4.js";
5
- import "../chunks/chunk-A7H753BA.js";
6
- import "../chunks/chunk-C44YRP5F.js";
7
- import "../chunks/chunk-JDZ5GTZT.js";
8
- import "../chunks/chunk-M75QPZNJ.js";
9
- import "../chunks/chunk-3GP3KT5L.js";
10
- import "../chunks/chunk-B5ARSBOH.js";
11
- import "../chunks/chunk-B5X2RLJG.js";
3
+ } from "../chunks/chunk-WI6SUU5B.js";
4
+ import "../chunks/chunk-NXBW6KY6.js";
5
+ import "../chunks/chunk-SDI6BVG7.js";
6
+ import "../chunks/chunk-5OJZV6YT.js";
7
+ import "../chunks/chunk-MEVTV4FI.js";
8
+ import "../chunks/chunk-D3E7AXBB.js";
9
+ import "../chunks/chunk-BW2NMXRV.js";
10
+ import "../chunks/chunk-W2YAW36J.js";
12
11
  import "../chunks/chunk-EIY2SKD3.js";
13
- import "../chunks/chunk-ZPZ7GNBT.js";
14
- import "../chunks/chunk-PFRQBCGC.js";
12
+ import "../chunks/chunk-T3H5ELLA.js";
15
13
  import "../chunks/chunk-HMXCN6PG.js";
16
14
  import "../chunks/chunk-AB35TJST.js";
17
- import "../chunks/chunk-BZFOFC4D.js";
18
- import "../chunks/chunk-CGMSKIEO.js";
19
- import "../chunks/chunk-UBQSRCWR.js";
15
+ import "../chunks/chunk-2VMKQKVO.js";
16
+ import "../chunks/chunk-DV5B5UU7.js";
17
+ import "../chunks/chunk-3YBP46PB.js";
18
+ import "../chunks/chunk-VACK24HF.js";
20
19
  import "../chunks/chunk-CPMHA4W5.js";
20
+ import "../chunks/chunk-ZPZ7GNBT.js";
21
21
  import "../chunks/chunk-BSOZW3FC.js";
22
22
  import "../chunks/chunk-RJWPJCIB.js";
23
23
  import "../chunks/chunk-HOAIOEI7.js";
24
- import "../chunks/chunk-4XWZNPQ2.js";
24
+ import "../chunks/chunk-2JL2JVZ2.js";
25
25
  export {
26
26
  bundleRoutes
27
27
  };
package/dist/tubeMap/coarsen.js CHANGED
@@ -1,28 +1,28 @@
1
1
  import {
2
2
  coarsenTubeMap,
3
3
  lastAtMost
4
- } from "../chunks/chunk-7O7EGTYG.js";
5
- import "../chunks/chunk-3LZ334X4.js";
6
- import "../chunks/chunk-A7H753BA.js";
7
- import "../chunks/chunk-C44YRP5F.js";
8
- import "../chunks/chunk-JDZ5GTZT.js";
9
- import "../chunks/chunk-M75QPZNJ.js";
10
- import "../chunks/chunk-3GP3KT5L.js";
11
- import "../chunks/chunk-B5ARSBOH.js";
12
- import "../chunks/chunk-B5X2RLJG.js";
4
+ } from "../chunks/chunk-OUM54ZSQ.js";
5
+ import "../chunks/chunk-NXBW6KY6.js";
6
+ import "../chunks/chunk-SDI6BVG7.js";
7
+ import "../chunks/chunk-5OJZV6YT.js";
8
+ import "../chunks/chunk-MEVTV4FI.js";
9
+ import "../chunks/chunk-D3E7AXBB.js";
10
+ import "../chunks/chunk-BW2NMXRV.js";
11
+ import "../chunks/chunk-W2YAW36J.js";
13
12
  import "../chunks/chunk-EIY2SKD3.js";
14
- import "../chunks/chunk-ZPZ7GNBT.js";
15
- import "../chunks/chunk-PFRQBCGC.js";
13
+ import "../chunks/chunk-T3H5ELLA.js";
16
14
  import "../chunks/chunk-HMXCN6PG.js";
17
15
  import "../chunks/chunk-AB35TJST.js";
18
- import "../chunks/chunk-BZFOFC4D.js";
19
- import "../chunks/chunk-CGMSKIEO.js";
20
- import "../chunks/chunk-UBQSRCWR.js";
16
+ import "../chunks/chunk-2VMKQKVO.js";
17
+ import "../chunks/chunk-DV5B5UU7.js";
18
+ import "../chunks/chunk-3YBP46PB.js";
19
+ import "../chunks/chunk-VACK24HF.js";
21
20
  import "../chunks/chunk-CPMHA4W5.js";
21
+ import "../chunks/chunk-ZPZ7GNBT.js";
22
22
  import "../chunks/chunk-BSOZW3FC.js";
23
23
  import "../chunks/chunk-RJWPJCIB.js";
24
24
  import "../chunks/chunk-HOAIOEI7.js";
25
- import "../chunks/chunk-4XWZNPQ2.js";
25
+ import "../chunks/chunk-2JL2JVZ2.js";
26
26
  export {
27
27
  coarsenTubeMap,
28
28
  lastAtMost
package/dist/tubeMap/deviations.js CHANGED
@@ -1,35 +1,35 @@
1
1
  import {
2
2
  lastAtMost
3
- } from "../chunks/chunk-7O7EGTYG.js";
3
+ } from "../chunks/chunk-OUM54ZSQ.js";
4
4
  import {
5
5
  boxX,
6
6
  referenceBoxes
7
- } from "../chunks/chunk-HSVFCA2J.js";
8
- import "../chunks/chunk-3LZ334X4.js";
9
- import "../chunks/chunk-A7H753BA.js";
10
- import "../chunks/chunk-C44YRP5F.js";
11
- import "../chunks/chunk-JDZ5GTZT.js";
12
- import "../chunks/chunk-M75QPZNJ.js";
13
- import "../chunks/chunk-3GP3KT5L.js";
14
- import "../chunks/chunk-B5ARSBOH.js";
15
- import {
16
- pathOrigin
17
- } from "../chunks/chunk-B5X2RLJG.js";
7
+ } from "../chunks/chunk-VO6FKNZE.js";
8
+ import "../chunks/chunk-NXBW6KY6.js";
9
+ import "../chunks/chunk-SDI6BVG7.js";
10
+ import "../chunks/chunk-5OJZV6YT.js";
11
+ import "../chunks/chunk-MEVTV4FI.js";
12
+ import "../chunks/chunk-D3E7AXBB.js";
13
+ import "../chunks/chunk-BW2NMXRV.js";
14
+ import "../chunks/chunk-W2YAW36J.js";
18
15
  import "../chunks/chunk-EIY2SKD3.js";
19
- import "../chunks/chunk-ZPZ7GNBT.js";
20
- import "../chunks/chunk-PFRQBCGC.js";
16
+ import "../chunks/chunk-T3H5ELLA.js";
21
17
  import "../chunks/chunk-HMXCN6PG.js";
22
18
  import "../chunks/chunk-AB35TJST.js";
23
- import "../chunks/chunk-BZFOFC4D.js";
24
- import "../chunks/chunk-CGMSKIEO.js";
25
- import "../chunks/chunk-UBQSRCWR.js";
19
+ import "../chunks/chunk-2VMKQKVO.js";
20
+ import "../chunks/chunk-DV5B5UU7.js";
21
+ import {
22
+ pathOrigin
23
+ } from "../chunks/chunk-3YBP46PB.js";
24
+ import "../chunks/chunk-VACK24HF.js";
26
25
  import "../chunks/chunk-CPMHA4W5.js";
26
+ import "../chunks/chunk-ZPZ7GNBT.js";
27
27
  import {
28
28
  pushTo
29
29
  } from "../chunks/chunk-BSOZW3FC.js";
30
30
  import "../chunks/chunk-RJWPJCIB.js";
31
31
  import "../chunks/chunk-HOAIOEI7.js";
32
- import "../chunks/chunk-4XWZNPQ2.js";
32
+ import "../chunks/chunk-2JL2JVZ2.js";
33
33
 
34
34
  // src/tubeMap/deviations.ts
35
35
  function boxAt(boxes, bp, visited) {