@jbrowse/bandage-core 11.4.0 → 11.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (142) hide show
  1. package/dist/alleleProjection/projectAlleles.js +1 -1
  2. package/dist/bubbles/bubbleHalos.js +9 -6
  3. package/dist/bubbles/classifyBubble.js +8 -5
  4. package/dist/bubbles/popBubble.js +3 -3
  5. package/dist/bubbles/superbubbles.js +11 -11
  6. package/dist/chunks/{chunk-FFHJGWDK.js → chunk-2C5SATRZ.js} +5 -5
  7. package/dist/chunks/{chunk-4XWZNPQ2.js → chunk-2JL2JVZ2.js} +1 -1
  8. package/dist/chunks/{chunk-BZFOFC4D.js → chunk-2VMKQKVO.js} +17 -7
  9. package/dist/chunks/{chunk-GM7M25NW.js → chunk-2XEAITWM.js} +15 -5
  10. package/dist/chunks/{chunk-7BTO7MZS.js → chunk-376YFQOY.js} +2 -2
  11. package/dist/chunks/{chunk-EFD753MS.js → chunk-3FWNQNF7.js} +1 -1
  12. package/dist/chunks/{chunk-B5X2RLJG.js → chunk-3YBP46PB.js} +27 -2
  13. package/dist/chunks/{chunk-EJRJAAN7.js → chunk-4DMSPNYV.js} +47 -27
  14. package/dist/chunks/{chunk-I4BYUNJN.js → chunk-4WXFQOYV.js} +5 -5
  15. package/dist/chunks/{chunk-OMUPUB4J.js → chunk-56L6R6D2.js} +2 -2
  16. package/dist/chunks/{chunk-C44YRP5F.js → chunk-5OJZV6YT.js} +3 -2
  17. package/dist/chunks/{chunk-234NFZS4.js → chunk-5ORP7EFJ.js} +1 -1
  18. package/dist/chunks/{chunk-TUQKGAK3.js → chunk-5WB7O7IT.js} +4 -4
  19. package/dist/chunks/{chunk-3VCKBSML.js → chunk-6YRSOL4K.js} +2 -2
  20. package/dist/chunks/{chunk-REOWLPH4.js → chunk-7OTWJQGA.js} +13 -13
  21. package/dist/chunks/{chunk-77EGQQJU.js → chunk-BFUS3ENH.js} +2 -2
  22. package/dist/chunks/{chunk-TGUFT6KK.js → chunk-BLUEFYIR.js} +4 -1
  23. package/dist/chunks/{chunk-JQ52XYD2.js → chunk-BVWMVWLJ.js} +12 -12
  24. package/dist/chunks/{chunk-3GP3KT5L.js → chunk-BW2NMXRV.js} +5 -5
  25. package/dist/chunks/{chunk-2Q22S52W.js → chunk-C6E6HXP5.js} +8 -8
  26. package/dist/chunks/{chunk-5I3K4R2G.js → chunk-CFXXFHRK.js} +2 -1
  27. package/dist/chunks/{chunk-JMABOQWL.js → chunk-CO6RGQAD.js} +1 -6
  28. package/dist/chunks/{chunk-M75QPZNJ.js → chunk-D3E7AXBB.js} +68 -26
  29. package/dist/chunks/{chunk-CGMSKIEO.js → chunk-DV5B5UU7.js} +55 -8
  30. package/dist/chunks/{chunk-G6UIYQZR.js → chunk-EQDQ7P4Y.js} +3 -2
  31. package/dist/chunks/{chunk-FRTYQQDI.js → chunk-EVXXFMZ7.js} +9 -9
  32. package/dist/chunks/{chunk-BXLLMWC3.js → chunk-F3KQQDKP.js} +1 -1
  33. package/dist/chunks/{chunk-6EOB6ANX.js → chunk-GZ36HNPJ.js} +1 -1
  34. package/dist/chunks/{chunk-3HGYGISG.js → chunk-HV35LDYH.js} +3 -3
  35. package/dist/chunks/{chunk-XSF4RQRP.js → chunk-JGHZ3N34.js} +22 -15
  36. package/dist/chunks/{chunk-D4ZFRBB4.js → chunk-JGQQAUVL.js} +3 -3
  37. package/dist/chunks/{chunk-PSCSZSVK.js → chunk-KA4F3N55.js} +4 -4
  38. package/dist/chunks/{chunk-SOMZGDVS.js → chunk-KJDERUQF.js} +1 -1
  39. package/dist/chunks/{chunk-E4ZM4OOJ.js → chunk-KZMSSPS6.js} +2 -2
  40. package/dist/chunks/{chunk-JDZ5GTZT.js → chunk-MEVTV4FI.js} +1 -1
  41. package/dist/chunks/{chunk-PNMJFFNB.js → chunk-MHZTTLBU.js} +1 -1
  42. package/dist/chunks/{chunk-VIQL7GZ4.js → chunk-MXLYBDOX.js} +14 -13
  43. package/dist/chunks/{chunk-3LZ334X4.js → chunk-NXBW6KY6.js} +6 -7
  44. package/dist/chunks/{chunk-7O7EGTYG.js → chunk-OUM54ZSQ.js} +2 -2
  45. package/dist/chunks/{chunk-WA5WNP6V.js → chunk-OYCQVJYY.js} +1 -1
  46. package/dist/chunks/{chunk-TZLEHZVC.js → chunk-P5PBJONQ.js} +1 -1
  47. package/dist/chunks/chunk-PQIFYQVI.js +21 -0
  48. package/dist/chunks/{chunk-6VVGFQ7S.js → chunk-QCOVHLJO.js} +1 -1
  49. package/dist/chunks/{chunk-TEXAKEJX.js → chunk-QD35GH4C.js} +3 -3
  50. package/dist/chunks/{chunk-CE6ZIKJX.js → chunk-RLCYVZ4B.js} +1 -1
  51. package/dist/chunks/{chunk-6YJESZND.js → chunk-ROLACYCO.js} +20 -20
  52. package/dist/chunks/{chunk-A7H753BA.js → chunk-SDI6BVG7.js} +5 -6
  53. package/dist/chunks/{chunk-A4JDEUAI.js → chunk-SNF2MIEF.js} +1 -1
  54. package/dist/chunks/{chunk-NMWQUFPF.js → chunk-SVVFWTG4.js} +2 -2
  55. package/dist/chunks/{chunk-PFRQBCGC.js → chunk-T3H5ELLA.js} +4 -4
  56. package/dist/chunks/{chunk-QM7KEWWT.js → chunk-TXTSE44S.js} +1 -1
  57. package/dist/chunks/{chunk-UBQSRCWR.js → chunk-VACK24HF.js} +43 -3
  58. package/dist/chunks/{chunk-HSVFCA2J.js → chunk-VO6FKNZE.js} +1 -1
  59. package/dist/chunks/{chunk-B5ARSBOH.js → chunk-W2YAW36J.js} +8 -7
  60. package/dist/chunks/{chunk-TJOOHTJ6.js → chunk-WI6SUU5B.js} +2 -2
  61. package/dist/chunks/{chunk-GJU6BJJA.js → chunk-XR2HMGAS.js} +1 -1
  62. package/dist/chunks/{chunk-N7G5ROIV.js → chunk-XXOBCANT.js} +26 -12
  63. package/dist/chunks/{chunk-G3I4TCEZ.js → chunk-YEYQFNFQ.js} +1 -1
  64. package/dist/chunks/{chunk-UFUSPK2A.js → chunk-YYIU7P73.js} +4 -1
  65. package/dist/chunks/{chunk-CRCD3ODN.js → chunk-ZANALBSX.js} +11 -3
  66. package/dist/cli/figure.js +52 -47
  67. package/dist/cli/fold.js +12 -12
  68. package/dist/deletionEdges.js +5 -2
  69. package/dist/facetGrid.js +2 -2
  70. package/dist/figure.js +36 -36
  71. package/dist/figureData.js +38 -38
  72. package/dist/figureScene.js +26 -26
  73. package/dist/figureSettings.js +12 -12
  74. package/dist/foldVariants.js +2 -2
  75. package/dist/gaf/parseGaf.js +1 -1
  76. package/dist/gbzCut.js +4 -4
  77. package/dist/gbzWindow.js +3 -3
  78. package/dist/genes/backboneGenes.js +4 -4
  79. package/dist/genes/geneFiles.js +1 -1
  80. package/dist/genes/genePins.js +3 -3
  81. package/dist/gfa/gfaConverter.js +4 -4
  82. package/dist/gfa/graphTables.js +2 -2
  83. package/dist/gfa-core/gfaParser.js +1 -1
  84. package/dist/gfa-core/index.js +1 -1
  85. package/dist/graphLabels.js +7 -4
  86. package/dist/index.js +96 -90
  87. package/dist/labelLayout.js +11 -8
  88. package/dist/layout/anchoredLayout.js +1 -1
  89. package/dist/layout/forceCache.js +12 -12
  90. package/dist/layout/mergeRuns.js +2 -2
  91. package/dist/layout/placeOffReference.js +1 -1
  92. package/dist/layout/sampleRowLayout.js +2 -2
  93. package/dist/layout/trimToWindow.js +2 -2
  94. package/dist/layout/tubeMapLayout.js +14 -14
  95. package/dist/layout/walkRowDraw.js +12 -12
  96. package/dist/layout/walkRowLayout.js +7 -7
  97. package/dist/layout/walkRowLinks.js +1 -1
  98. package/dist/layout/walkRowRuns.js +4 -4
  99. package/dist/layout/walkRows.js +5 -5
  100. package/dist/layout/walkStrip.js +17 -17
  101. package/dist/layoutEngines.js +1 -1
  102. package/dist/layoutModes.js +17 -17
  103. package/dist/locus.js +8 -0
  104. package/dist/nodeWidths.js +5 -3
  105. package/dist/pansn.js +1 -1
  106. package/dist/pathAnchoring.js +4 -2
  107. package/dist/pathColors.js +8 -8
  108. package/dist/pipeline.js +11 -11
  109. package/dist/reference.js +2 -2
  110. package/dist/referenceStrip.js +12 -12
  111. package/dist/renderer/Canvas2DRenderer.js +1 -1
  112. package/dist/renderer/GeometryBuilder.js +15 -13
  113. package/dist/tubeMap/axis.js +8 -5
  114. package/dist/tubeMap/bundle.js +15 -15
  115. package/dist/tubeMap/coarsen.js +15 -15
  116. package/dist/tubeMap/deviations.js +18 -18
  117. package/dist/tubeMap/draw.js +10 -8
  118. package/dist/tubeMap/genes.js +9 -6
  119. package/dist/tubeMap/nodeColors.js +12 -12
  120. package/dist/tubeMap/reads.js +4 -4
  121. package/dist/types/figureData.d.ts +12 -0
  122. package/dist/types/gaf/parseGaf.d.ts +1 -1
  123. package/dist/types/gfa/graphTables.d.ts +3 -2
  124. package/dist/types/index.d.ts +1 -0
  125. package/dist/types/locus.d.ts +10 -0
  126. package/dist/types/nodeWidths.d.ts +2 -1
  127. package/dist/types/pathAnchoring.d.ts +2 -0
  128. package/dist/types/renderer/Canvas2DRenderer.d.ts +2 -0
  129. package/dist/types/renderer/GeometryBuilder.d.ts +1 -0
  130. package/dist/types/tubeMap/reads.d.ts +0 -1
  131. package/dist/types/util/geometry.d.ts +7 -1
  132. package/dist/types/version.d.ts +1 -1
  133. package/dist/util/SpatialIndex.js +7 -4
  134. package/dist/util/edgeCurves.js +6 -3
  135. package/dist/util/geometry.js +1 -1
  136. package/dist/util/hitDetection.js +8 -5
  137. package/dist/version.js +1 -1
  138. package/dist/viewport.js +12 -12
  139. package/dist/walkEncoding.js +12 -12
  140. package/dist/walkHighlight.js +13 -13
  141. package/dist/walkKey.js +8 -5
  142. package/package.json +1 -1
package/dist/index.js CHANGED
@@ -1,25 +1,35 @@
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  import {
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  wheelZoomFactor
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  } from "./chunks/chunk-TDQLINVI.js";
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+ import {
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+ drawTubeMapGenes,
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+ tubeMapGenes
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+ } from "./chunks/chunk-GZ36HNPJ.js";
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  import {
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  tubeMapNodeColors
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- } from "./chunks/chunk-G3I4TCEZ.js";
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+ } from "./chunks/chunk-YEYQFNFQ.js";
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  import {
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  bundleRoutes
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- } from "./chunks/chunk-TJOOHTJ6.js";
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+ } from "./chunks/chunk-WI6SUU5B.js";
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  import {
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  connectorAt,
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  drawLitConnector,
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  drawTubeMapConnectors,
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  tubeMapConnectors
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  } from "./chunks/chunk-2ZT7ZF7A.js";
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+ import {
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+ drawTubeMapRuler,
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+ referenceBoxes,
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+ rulerBoxes,
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+ tubeX
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+ } from "./chunks/chunk-VO6FKNZE.js";
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  import {
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  drawTubeMap,
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  drawTubeMapHighlight,
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  tubeMapMismatchAt,
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  tubeMapPicture,
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  tubeMapTrackAt
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- } from "./chunks/chunk-3HGYGISG.js";
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+ } from "./chunks/chunk-HV35LDYH.js";
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  import "./chunks/chunk-BX4AUMZE.js";
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  import {
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  tubeMapFrame,
@@ -29,79 +39,64 @@ import {
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  referenceKnots,
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  warpX
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  } from "./chunks/chunk-MYDHU2UV.js";
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- import {
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- drawTubeMapGenes,
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- tubeMapGenes
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- } from "./chunks/chunk-6EOB6ANX.js";
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- import {
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- drawTubeMapRuler,
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- referenceBoxes,
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- rulerBoxes,
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- tubeX
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- } from "./chunks/chunk-HSVFCA2J.js";
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  import {
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  ribbonJoin,
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  sharedRowOrder,
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  walkRowBlocks,
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  walkRowLinks
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- } from "./chunks/chunk-UFUSPK2A.js";
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+ } from "./chunks/chunk-YYIU7P73.js";
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  import {
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  createForceLayoutCache
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- } from "./chunks/chunk-BXLLMWC3.js";
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+ } from "./chunks/chunk-F3KQQDKP.js";
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  import {
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  graphBubbles,
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  superbubblesFromGraph
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- } from "./chunks/chunk-2Q22S52W.js";
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+ } from "./chunks/chunk-C6E6HXP5.js";
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+ import {
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+ bubbleHalos
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+ } from "./chunks/chunk-KZMSSPS6.js";
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  import {
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  bubblesFromGraph
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  } from "./chunks/chunk-RFG42VIO.js";
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+ import {
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+ BUBBLE_KIND_COLORS,
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+ BUBBLE_KIND_NAMES,
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+ bubbleSegmentIds,
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+ classifyBubble
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+ } from "./chunks/chunk-SNF2MIEF.js";
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+ import "./chunks/chunk-FX4RDMDN.js";
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  import {
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  bubbleSubgraph
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- } from "./chunks/chunk-PNMJFFNB.js";
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+ } from "./chunks/chunk-MHZTTLBU.js";
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  import {
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  backboneGenes
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- } from "./chunks/chunk-7BTO7MZS.js";
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+ } from "./chunks/chunk-376YFQOY.js";
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  import {
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  genesFromBed,
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  genesFromGff3Lines,
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  genesFromText,
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  mergeOverlappingByName
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- } from "./chunks/chunk-G6UIYQZR.js";
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- import {
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- bubbleHalos
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- } from "./chunks/chunk-E4ZM4OOJ.js";
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- import {
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- BUBBLE_KIND_COLORS,
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- BUBBLE_KIND_NAMES,
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- bubbleSegmentIds,
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- classifyBubble
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- } from "./chunks/chunk-A4JDEUAI.js";
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- import "./chunks/chunk-FX4RDMDN.js";
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+ } from "./chunks/chunk-EQDQ7P4Y.js";
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  import {
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  REFERENCE_STRIP_ZONE_PX,
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  drawReferenceStrip,
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  referenceStripBlocks,
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  stripBlockAt
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- } from "./chunks/chunk-6VVGFQ7S.js";
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+ } from "./chunks/chunk-QCOVHLJO.js";
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  import {
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  LAYOUT_QUALITIES
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  } from "./chunks/chunk-K5SIJGAE.js";
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+ import {
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+ formatLocus,
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+ parseLocus
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+ } from "./chunks/chunk-PQIFYQVI.js";
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  import {
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  edgeHoverText,
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  regionLabel
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  } from "./chunks/chunk-AZFVORTC.js";
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  import {
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  figureSvg
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- } from "./chunks/chunk-6YJESZND.js";
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- import {
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- Canvas2DRenderer
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- } from "./chunks/chunk-EJRJAAN7.js";
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- import {
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- getDpr
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- } from "./chunks/chunk-RBCE2OQH.js";
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- import {
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- svgCanvas
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- } from "./chunks/chunk-V4YML3GR.js";
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+ } from "./chunks/chunk-ROLACYCO.js";
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  import {
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  WALK_STRIP_CEILING_PX,
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  cutsWholeWalks,
@@ -113,7 +108,16 @@ import {
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  walkStripApplies,
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  walkStripFrame,
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  walkStripLabelsTree
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- } from "./chunks/chunk-I4BYUNJN.js";
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+ } from "./chunks/chunk-4WXFQOYV.js";
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+ import {
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+ Canvas2DRenderer
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+ } from "./chunks/chunk-4DMSPNYV.js";
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+ import {
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+ getDpr
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+ } from "./chunks/chunk-RBCE2OQH.js";
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+ import {
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+ svgCanvas
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+ } from "./chunks/chunk-V4YML3GR.js";
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  import {
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  BAR_PX,
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  CALL_TICK,
@@ -141,7 +145,7 @@ import {
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  walkRowsKey,
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  walkRowsKeyTree,
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  walkRowsTree
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- } from "./chunks/chunk-VIQL7GZ4.js";
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+ } from "./chunks/chunk-MXLYBDOX.js";
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  import {
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  EXON_COLOR,
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  exonOutlineTree,
@@ -152,12 +156,12 @@ import {
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  LEGEND_INSET_PX,
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  geneCoverageNote,
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  layoutLabels
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- } from "./chunks/chunk-PSCSZSVK.js";
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+ } from "./chunks/chunk-KA4F3N55.js";
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  import {
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  findHoveredEdge,
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  findHoveredNode
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- } from "./chunks/chunk-OMUPUB4J.js";
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- import "./chunks/chunk-3VCKBSML.js";
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+ } from "./chunks/chunk-56L6R6D2.js";
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+ import "./chunks/chunk-6YRSOL4K.js";
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  import {
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  el,
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  serializeEl
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  import {
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  figureData,
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  gfaFigureData
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- } from "./chunks/chunk-N7G5ROIV.js";
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+ } from "./chunks/chunk-XXOBCANT.js";
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  import {
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  LAYOUT_ENGINES,
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  layoutEngine
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- } from "./chunks/chunk-JMABOQWL.js";
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+ } from "./chunks/chunk-CO6RGQAD.js";
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  import {
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  FORCE_LAYOUT_LABEL,
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  LAYOUT_MODES,
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  layoutModeByValue,
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  modeUsesLayoutEngine
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- } from "./chunks/chunk-TEXAKEJX.js";
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- import "./chunks/chunk-3LZ334X4.js";
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- import "./chunks/chunk-A7H753BA.js";
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- import "./chunks/chunk-GJU6BJJA.js";
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+ } from "./chunks/chunk-QD35GH4C.js";
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+ import "./chunks/chunk-NXBW6KY6.js";
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+ import "./chunks/chunk-SDI6BVG7.js";
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+ import "./chunks/chunk-XR2HMGAS.js";
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  import "./chunks/chunk-GJLZ2MKE.js";
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  import "./chunks/chunk-MYLAJDKB.js";
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- import "./chunks/chunk-C44YRP5F.js";
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+ import "./chunks/chunk-5OJZV6YT.js";
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  import "./chunks/chunk-3GLG3ZLE.js";
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  import {
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  cutGbzRegion,
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  openGbz,
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  parseRegion
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- } from "./chunks/chunk-TUQKGAK3.js";
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+ } from "./chunks/chunk-5WB7O7IT.js";
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  import {
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  compactTables,
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  cutWindowGFA,
@@ -198,14 +202,14 @@ import {
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  referencePathQuery,
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  referenceSamplesOf,
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  resolveReferenceSample
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- } from "./chunks/chunk-NMWQUFPF.js";
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+ } from "./chunks/chunk-SVVFWTG4.js";
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  import "./chunks/chunk-HNWJ4B7S.js";
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  import {
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  genePins
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- } from "./chunks/chunk-77EGQQJU.js";
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+ } from "./chunks/chunk-BFUS3ENH.js";
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  import {
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  version
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- } from "./chunks/chunk-QM7KEWWT.js";
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+ } from "./chunks/chunk-TXTSE44S.js";
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  import {
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  axisScaleOf,
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  contains,
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  screenToLayout,
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  viewportOf,
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  zoomAbout
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- } from "./chunks/chunk-CE6ZIKJX.js";
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- import "./chunks/chunk-JQ52XYD2.js";
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+ } from "./chunks/chunk-RLCYVZ4B.js";
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+ import "./chunks/chunk-BVWMVWLJ.js";
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  import {
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  layoutGeometryInputs
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  } from "./chunks/chunk-LOCJN3BZ.js";
@@ -222,7 +226,7 @@ import {
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  facetLifts,
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  walkHighlight,
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  walkLift
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- } from "./chunks/chunk-FRTYQQDI.js";
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+ } from "./chunks/chunk-EVXXFMZ7.js";
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  import {
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  WALK_FIELDS,
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  WALK_SCHEMES,
@@ -230,17 +234,17 @@ import {
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  encodingSwatchCss,
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  resolveEncoding,
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  schemeCss
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- } from "./chunks/chunk-GM7M25NW.js";
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- import {
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- rangeText,
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- walkKey,
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- walkPosition
238
- } from "./chunks/chunk-D4ZFRBB4.js";
237
+ } from "./chunks/chunk-2XEAITWM.js";
239
238
  import {
240
239
  buildGeometry,
241
240
  computeReferenceRamp
242
- } from "./chunks/chunk-XSF4RQRP.js";
241
+ } from "./chunks/chunk-JGHZ3N34.js";
243
242
  import "./chunks/chunk-G2FD7S3C.js";
243
+ import {
244
+ rangeText,
245
+ walkKey,
246
+ walkPosition
247
+ } from "./chunks/chunk-JGQQAUVL.js";
244
248
  import {
245
249
  RAMP_GRADIENT_CSS,
246
250
  REFERENCE_RAMP_MAX_HUE,
@@ -248,37 +252,37 @@ import {
248
252
  rampHueCss,
249
253
  rampStops
250
254
  } from "./chunks/chunk-GQZVR5DW.js";
251
- import "./chunks/chunk-WA5WNP6V.js";
255
+ import "./chunks/chunk-OYCQVJYY.js";
252
256
  import {
253
257
  walkRowLabels,
254
258
  walkRowLayoutOf,
255
259
  walkRowsExtent
256
- } from "./chunks/chunk-TZLEHZVC.js";
260
+ } from "./chunks/chunk-P5PBJONQ.js";
257
261
  import {
258
262
  filterSamples,
259
263
  walkRows
260
- } from "./chunks/chunk-JDZ5GTZT.js";
264
+ } from "./chunks/chunk-MEVTV4FI.js";
261
265
  import {
262
266
  runAt,
263
267
  walkRowRuns,
264
268
  walkRowsOf
265
- } from "./chunks/chunk-M75QPZNJ.js";
269
+ } from "./chunks/chunk-D3E7AXBB.js";
266
270
  import {
267
271
  pathColorsLegible,
268
272
  pathLegend,
269
273
  walkLabelsOf
270
- } from "./chunks/chunk-3GP3KT5L.js";
274
+ } from "./chunks/chunk-BW2NMXRV.js";
271
275
  import {
272
276
  NODE_WIDTHS,
273
277
  maxNodeWidthPx,
274
278
  meanDepth,
275
279
  nodeInk,
276
280
  nodeWidthPx
277
- } from "./chunks/chunk-CRCD3ODN.js";
281
+ } from "./chunks/chunk-ZANALBSX.js";
278
282
  import {
279
283
  FIGURE_DEFAULTS,
280
284
  figureSpecSettings
281
- } from "./chunks/chunk-EFD753MS.js";
285
+ } from "./chunks/chunk-3FWNQNF7.js";
282
286
  import {
283
287
  ENGINE_DEFAULTS,
284
288
  FIT_PADDING,
@@ -291,19 +295,18 @@ import {
291
295
  forceLayout,
292
296
  layoutExtent,
293
297
  loadGraph
294
- } from "./chunks/chunk-REOWLPH4.js";
298
+ } from "./chunks/chunk-7OTWJQGA.js";
299
+ import "./chunks/chunk-OPPVSPEF.js";
295
300
  import "./chunks/chunk-3PZSBNLI.js";
296
301
  import "./chunks/chunk-CKUVEHSS.js";
297
- import "./chunks/chunk-OPPVSPEF.js";
298
302
  import "./chunks/chunk-VPE4AYP7.js";
299
- import "./chunks/chunk-FFHJGWDK.js";
303
+ import "./chunks/chunk-2C5SATRZ.js";
300
304
  import "./chunks/chunk-QYBZZI5H.js";
301
- import "./chunks/chunk-5I3K4R2G.js";
305
+ import "./chunks/chunk-CFXXFHRK.js";
302
306
  import {
303
307
  graphFromTables,
304
308
  graphTablesGFA
305
- } from "./chunks/chunk-B5ARSBOH.js";
306
- import "./chunks/chunk-B5X2RLJG.js";
309
+ } from "./chunks/chunk-W2YAW36J.js";
307
310
  import "./chunks/chunk-VX656OAZ.js";
308
311
  import {
309
312
  WELL_KNOWN_SAMPLES,
@@ -314,7 +317,7 @@ import {
314
317
  refNameBinding,
315
318
  referenceLabel,
316
319
  wellKnownSample
317
- } from "./chunks/chunk-234NFZS4.js";
320
+ } from "./chunks/chunk-5ORP7EFJ.js";
318
321
  import {
319
322
  gfaTables
320
323
  } from "./chunks/chunk-DZR37KXT.js";
@@ -327,20 +330,16 @@ import {
327
330
  parseStopTag,
328
331
  stopTag
329
332
  } from "./chunks/chunk-EIY2SKD3.js";
330
- import {
331
- PathVisits,
332
- PathVisitsBuilder
333
- } from "./chunks/chunk-ZPZ7GNBT.js";
334
333
  import {
335
334
  formatBp
336
- } from "./chunks/chunk-PFRQBCGC.js";
335
+ } from "./chunks/chunk-T3H5ELLA.js";
337
336
  import "./chunks/chunk-HMXCN6PG.js";
338
337
  import {
339
338
  LABEL_CHAR_PX,
340
339
  LABEL_PAD,
341
340
  LABEL_PX
342
341
  } from "./chunks/chunk-AB35TJST.js";
343
- import "./chunks/chunk-BZFOFC4D.js";
342
+ import "./chunks/chunk-2VMKQKVO.js";
344
343
  import {
345
344
  BUBBLE_SPREADS
346
345
  } from "./chunks/chunk-HKYXWZQS.js";
@@ -352,11 +351,16 @@ import {
352
351
  import {
353
352
  deletionDrawing,
354
353
  deletionEdges
355
- } from "./chunks/chunk-CGMSKIEO.js";
356
- import "./chunks/chunk-UBQSRCWR.js";
354
+ } from "./chunks/chunk-DV5B5UU7.js";
355
+ import "./chunks/chunk-3YBP46PB.js";
356
+ import "./chunks/chunk-VACK24HF.js";
357
357
  import {
358
358
  ROW_HEIGHT_PX
359
359
  } from "./chunks/chunk-CPMHA4W5.js";
360
+ import {
361
+ PathVisits,
362
+ PathVisitsBuilder
363
+ } from "./chunks/chunk-ZPZ7GNBT.js";
360
364
  import "./chunks/chunk-BSOZW3FC.js";
361
365
  import "./chunks/chunk-RJWPJCIB.js";
362
366
  import "./chunks/chunk-HOAIOEI7.js";
@@ -368,12 +372,12 @@ import {
368
372
  facetCells,
369
373
  facetGrid,
370
374
  facetSettingOf
371
- } from "./chunks/chunk-TGUFT6KK.js";
375
+ } from "./chunks/chunk-BLUEFYIR.js";
372
376
  import {
373
377
  panSNContig,
374
378
  panSNHaplotype,
375
379
  panSNSample
376
- } from "./chunks/chunk-4XWZNPQ2.js";
380
+ } from "./chunks/chunk-2JL2JVZ2.js";
377
381
 
378
382
  // src/index.ts
379
383
  import { stressLayout } from "@jbrowse/graph-stress-layout";
@@ -484,6 +488,7 @@ export {
484
488
  fitTransform,
485
489
  forceLayout,
486
490
  formatBp,
491
+ formatLocus,
487
492
  gapParts,
488
493
  gapStyle,
489
494
  geneCoverageNote,
@@ -518,6 +523,7 @@ export {
518
523
  panSNContig,
519
524
  panSNHaplotype,
520
525
  panSNSample,
526
+ parseLocus,
521
527
  parseRegion,
522
528
  parseStopTag,
523
529
  pathColorsLegible,
@@ -4,20 +4,23 @@ import {
4
4
  geneCoverageNote,
5
5
  geneLabelCandidates,
6
6
  layoutLabels
7
- } from "./chunks/chunk-PSCSZSVK.js";
8
- import "./chunks/chunk-OMUPUB4J.js";
9
- import "./chunks/chunk-3VCKBSML.js";
10
- import "./chunks/chunk-WA5WNP6V.js";
11
- import "./chunks/chunk-PFRQBCGC.js";
7
+ } from "./chunks/chunk-KA4F3N55.js";
8
+ import "./chunks/chunk-56L6R6D2.js";
9
+ import "./chunks/chunk-6YRSOL4K.js";
10
+ import "./chunks/chunk-OYCQVJYY.js";
11
+ import "./chunks/chunk-T3H5ELLA.js";
12
12
  import "./chunks/chunk-HMXCN6PG.js";
13
13
  import "./chunks/chunk-AB35TJST.js";
14
- import "./chunks/chunk-BZFOFC4D.js";
15
- import "./chunks/chunk-CGMSKIEO.js";
16
- import "./chunks/chunk-UBQSRCWR.js";
14
+ import "./chunks/chunk-2VMKQKVO.js";
15
+ import "./chunks/chunk-DV5B5UU7.js";
16
+ import "./chunks/chunk-3YBP46PB.js";
17
+ import "./chunks/chunk-VACK24HF.js";
17
18
  import "./chunks/chunk-CPMHA4W5.js";
19
+ import "./chunks/chunk-ZPZ7GNBT.js";
18
20
  import "./chunks/chunk-BSOZW3FC.js";
19
21
  import "./chunks/chunk-RJWPJCIB.js";
20
22
  import "./chunks/chunk-HOAIOEI7.js";
23
+ import "./chunks/chunk-2JL2JVZ2.js";
21
24
  export {
22
25
  HALO_FACTOR,
23
26
  LEGEND_INSET_PX,
@@ -8,7 +8,7 @@ import "../chunks/chunk-CPMHA4W5.js";
8
8
  import "../chunks/chunk-BSOZW3FC.js";
9
9
  import "../chunks/chunk-RJWPJCIB.js";
10
10
  import "../chunks/chunk-HOAIOEI7.js";
11
- import "../chunks/chunk-4XWZNPQ2.js";
11
+ import "../chunks/chunk-2JL2JVZ2.js";
12
12
  export {
13
13
  anchoredLayout
14
14
  };
@@ -1,30 +1,30 @@
1
1
  import {
2
2
  createForceLayoutCache
3
- } from "../chunks/chunk-BXLLMWC3.js";
4
- import "../chunks/chunk-REOWLPH4.js";
3
+ } from "../chunks/chunk-F3KQQDKP.js";
4
+ import "../chunks/chunk-7OTWJQGA.js";
5
+ import "../chunks/chunk-OPPVSPEF.js";
5
6
  import "../chunks/chunk-3PZSBNLI.js";
6
7
  import "../chunks/chunk-CKUVEHSS.js";
7
- import "../chunks/chunk-OPPVSPEF.js";
8
8
  import "../chunks/chunk-VPE4AYP7.js";
9
- import "../chunks/chunk-FFHJGWDK.js";
9
+ import "../chunks/chunk-2C5SATRZ.js";
10
10
  import "../chunks/chunk-QYBZZI5H.js";
11
- import "../chunks/chunk-5I3K4R2G.js";
12
- import "../chunks/chunk-B5ARSBOH.js";
13
- import "../chunks/chunk-B5X2RLJG.js";
11
+ import "../chunks/chunk-CFXXFHRK.js";
12
+ import "../chunks/chunk-W2YAW36J.js";
14
13
  import "../chunks/chunk-VX656OAZ.js";
15
14
  import "../chunks/chunk-DZR37KXT.js";
16
15
  import "../chunks/chunk-EIY2SKD3.js";
17
- import "../chunks/chunk-ZPZ7GNBT.js";
18
- import "../chunks/chunk-BZFOFC4D.js";
16
+ import "../chunks/chunk-2VMKQKVO.js";
19
17
  import "../chunks/chunk-HKYXWZQS.js";
20
18
  import "../chunks/chunk-34BOZKIE.js";
21
- import "../chunks/chunk-CGMSKIEO.js";
22
- import "../chunks/chunk-UBQSRCWR.js";
19
+ import "../chunks/chunk-DV5B5UU7.js";
20
+ import "../chunks/chunk-3YBP46PB.js";
21
+ import "../chunks/chunk-VACK24HF.js";
23
22
  import "../chunks/chunk-CPMHA4W5.js";
23
+ import "../chunks/chunk-ZPZ7GNBT.js";
24
24
  import "../chunks/chunk-BSOZW3FC.js";
25
25
  import "../chunks/chunk-RJWPJCIB.js";
26
26
  import "../chunks/chunk-HOAIOEI7.js";
27
- import "../chunks/chunk-4XWZNPQ2.js";
27
+ import "../chunks/chunk-2JL2JVZ2.js";
28
28
  export {
29
29
  createForceLayoutCache
30
30
  };
@@ -3,8 +3,8 @@ import {
3
3
  polylineMidpoint,
4
4
  polylineSlice,
5
5
  splitRuns
6
- } from "../chunks/chunk-BZFOFC4D.js";
7
- import "../chunks/chunk-UBQSRCWR.js";
6
+ } from "../chunks/chunk-2VMKQKVO.js";
7
+ import "../chunks/chunk-VACK24HF.js";
8
8
  import "../chunks/chunk-CPMHA4W5.js";
9
9
  import "../chunks/chunk-BSOZW3FC.js";
10
10
  import "../chunks/chunk-RJWPJCIB.js";
@@ -6,7 +6,7 @@ import "../chunks/chunk-VX656OAZ.js";
6
6
  import "../chunks/chunk-BSOZW3FC.js";
7
7
  import "../chunks/chunk-RJWPJCIB.js";
8
8
  import "../chunks/chunk-HOAIOEI7.js";
9
- import "../chunks/chunk-4XWZNPQ2.js";
9
+ import "../chunks/chunk-2JL2JVZ2.js";
10
10
  export {
11
11
  placeOffReference
12
12
  };
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  sampleRowLayout
3
- } from "../chunks/chunk-GJU6BJJA.js";
3
+ } from "../chunks/chunk-XR2HMGAS.js";
4
4
  import "../chunks/chunk-MYLAJDKB.js";
5
5
  import "../chunks/chunk-3GLG3ZLE.js";
6
6
  import "../chunks/chunk-VX656OAZ.js";
@@ -8,7 +8,7 @@ import "../chunks/chunk-CPMHA4W5.js";
8
8
  import "../chunks/chunk-BSOZW3FC.js";
9
9
  import "../chunks/chunk-RJWPJCIB.js";
10
10
  import "../chunks/chunk-HOAIOEI7.js";
11
- import "../chunks/chunk-4XWZNPQ2.js";
11
+ import "../chunks/chunk-2JL2JVZ2.js";
12
12
  export {
13
13
  sampleRowLayout
14
14
  };
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  pathOrigin,
3
3
  trimOrigins
4
- } from "../chunks/chunk-B5X2RLJG.js";
4
+ } from "../chunks/chunk-3YBP46PB.js";
5
5
  import {
6
6
  PathVisitsBuilder
7
7
  } from "../chunks/chunk-ZPZ7GNBT.js";
@@ -11,7 +11,7 @@ import {
11
11
  overlapsWindow
12
12
  } from "../chunks/chunk-RJWPJCIB.js";
13
13
  import "../chunks/chunk-HOAIOEI7.js";
14
- import "../chunks/chunk-4XWZNPQ2.js";
14
+ import "../chunks/chunk-2JL2JVZ2.js";
15
15
 
16
16
  // src/layout/trimToWindow.ts
17
17
  function trimToWindow(graph, window) {
@@ -5,27 +5,27 @@ import {
5
5
  tubeMapLayout,
6
6
  tubeMapReferenceLayout,
7
7
  tubeMapTracks
8
- } from "../chunks/chunk-3LZ334X4.js";
9
- import "../chunks/chunk-A7H753BA.js";
10
- import "../chunks/chunk-C44YRP5F.js";
11
- import "../chunks/chunk-JDZ5GTZT.js";
12
- import "../chunks/chunk-M75QPZNJ.js";
13
- import "../chunks/chunk-3GP3KT5L.js";
14
- import "../chunks/chunk-B5ARSBOH.js";
15
- import "../chunks/chunk-B5X2RLJG.js";
8
+ } from "../chunks/chunk-NXBW6KY6.js";
9
+ import "../chunks/chunk-SDI6BVG7.js";
10
+ import "../chunks/chunk-5OJZV6YT.js";
11
+ import "../chunks/chunk-MEVTV4FI.js";
12
+ import "../chunks/chunk-D3E7AXBB.js";
13
+ import "../chunks/chunk-BW2NMXRV.js";
14
+ import "../chunks/chunk-W2YAW36J.js";
16
15
  import "../chunks/chunk-EIY2SKD3.js";
17
- import "../chunks/chunk-ZPZ7GNBT.js";
18
- import "../chunks/chunk-PFRQBCGC.js";
16
+ import "../chunks/chunk-T3H5ELLA.js";
19
17
  import "../chunks/chunk-HMXCN6PG.js";
20
18
  import "../chunks/chunk-AB35TJST.js";
21
- import "../chunks/chunk-BZFOFC4D.js";
22
- import "../chunks/chunk-CGMSKIEO.js";
23
- import "../chunks/chunk-UBQSRCWR.js";
19
+ import "../chunks/chunk-2VMKQKVO.js";
20
+ import "../chunks/chunk-DV5B5UU7.js";
21
+ import "../chunks/chunk-3YBP46PB.js";
22
+ import "../chunks/chunk-VACK24HF.js";
24
23
  import "../chunks/chunk-CPMHA4W5.js";
24
+ import "../chunks/chunk-ZPZ7GNBT.js";
25
25
  import "../chunks/chunk-BSOZW3FC.js";
26
26
  import "../chunks/chunk-RJWPJCIB.js";
27
27
  import "../chunks/chunk-HOAIOEI7.js";
28
- import "../chunks/chunk-4XWZNPQ2.js";
28
+ import "../chunks/chunk-2JL2JVZ2.js";
29
29
  export {
30
30
  hasTubeMapBackbone,
31
31
  hasTubeMapPaths,
@@ -29,29 +29,29 @@ import {
29
29
  walkRowsKey,
30
30
  walkRowsKeyTree,
31
31
  walkRowsTree
32
- } from "../chunks/chunk-VIQL7GZ4.js";
32
+ } from "../chunks/chunk-MXLYBDOX.js";
33
33
  import "../chunks/chunk-H2H4Y3TV.js";
34
- import "../chunks/chunk-XSF4RQRP.js";
34
+ import "../chunks/chunk-JGHZ3N34.js";
35
35
  import "../chunks/chunk-G2FD7S3C.js";
36
36
  import "../chunks/chunk-GQZVR5DW.js";
37
- import "../chunks/chunk-WA5WNP6V.js";
38
- import "../chunks/chunk-3GP3KT5L.js";
39
- import "../chunks/chunk-CRCD3ODN.js";
40
- import "../chunks/chunk-B5X2RLJG.js";
37
+ import "../chunks/chunk-OYCQVJYY.js";
38
+ import "../chunks/chunk-BW2NMXRV.js";
39
+ import "../chunks/chunk-ZANALBSX.js";
41
40
  import "../chunks/chunk-VX656OAZ.js";
42
41
  import "../chunks/chunk-EIY2SKD3.js";
43
- import "../chunks/chunk-ZPZ7GNBT.js";
44
- import "../chunks/chunk-PFRQBCGC.js";
42
+ import "../chunks/chunk-T3H5ELLA.js";
45
43
  import "../chunks/chunk-HMXCN6PG.js";
46
44
  import "../chunks/chunk-AB35TJST.js";
47
- import "../chunks/chunk-BZFOFC4D.js";
48
- import "../chunks/chunk-CGMSKIEO.js";
49
- import "../chunks/chunk-UBQSRCWR.js";
45
+ import "../chunks/chunk-2VMKQKVO.js";
46
+ import "../chunks/chunk-DV5B5UU7.js";
47
+ import "../chunks/chunk-3YBP46PB.js";
48
+ import "../chunks/chunk-VACK24HF.js";
50
49
  import "../chunks/chunk-CPMHA4W5.js";
50
+ import "../chunks/chunk-ZPZ7GNBT.js";
51
51
  import "../chunks/chunk-BSOZW3FC.js";
52
52
  import "../chunks/chunk-RJWPJCIB.js";
53
53
  import "../chunks/chunk-HOAIOEI7.js";
54
- import "../chunks/chunk-4XWZNPQ2.js";
54
+ import "../chunks/chunk-2JL2JVZ2.js";
55
55
  export {
56
56
  BAR_PX,
57
57
  CALL_TICK,