@gsep/core 0.8.0

package/dist/core/DNAProfile.js

@@ -0,0 +1,141 @@
+export class DNAProfile {
+    storage;
+    constructor(storage) {
+        this.storage = storage;
+    }
+    async getDNA(userId, genomeId) {
+        const dna = await this.storage.loadDNA(userId, genomeId);
+        if (!dna) {
+            return this.createDefaultDNA(userId, genomeId);
+        }
+        return dna;
+    }
+    async updateDNA(userId, genomeId, interaction) {
+        const currentDNA = await this.getDNA(userId, genomeId);
+        const newTraits = this.extractTraits(interaction, currentDNA);
+        const updatedTraits = this.mergeTraits(currentDNA.traits, newTraits);
+        const updatedConfidence = this.updateConfidence(currentDNA.confidence, newTraits);
+        const updatedDNA = {
+            userId,
+            genomeId,
+            traits: updatedTraits,
+            confidence: updatedConfidence,
+            generation: currentDNA.generation + 1,
+            lastEvolved: new Date(),
+        };
+        await this.storage.saveDNA(userId, genomeId, updatedDNA);
+        return updatedDNA;
+    }
+    async exportDNA(userId, genomeId) {
+        const dna = await this.getDNA(userId, genomeId);
+        return JSON.stringify(dna, null, 2);
+    }
+    createDefaultDNA(userId, genomeId) {
+        return {
+            userId,
+            genomeId: genomeId || 'default',
+            traits: {
+                communicationStyle: 'formal',
+                verbosity: 'balanced',
+                tone: 'friendly',
+                preferredTools: [],
+                preferredFormats: [],
+                preferredLanguage: 'en',
+                domainExpertise: {},
+                taskSuccessRates: {},
+                peakProductivityHours: [],
+                averageTurnsToSuccess: 0,
+                retryPatterns: {},
+                adaptationRate: 0.5,
+                stabilityScore: 0.5,
+            },
+            confidence: {},
+            generation: 0,
+            lastEvolved: new Date(),
+        };
+    }
+    extractTraits(interaction, currentDNA) {
+        const newTraits = {};
+        const style = this.detectCommunicationStyle(interaction.userMessage);
+        if (style)
+            newTraits.communicationStyle = style;
+        const verbosity = this.detectVerbosity(interaction.assistantResponse, interaction.userMessage);
+        if (verbosity)
+            newTraits.verbosity = verbosity;
+        if (interaction.toolCalls.length > 0) {
+            const tools = interaction.toolCalls.map(tc => tc.name);
+            newTraits.preferredTools = this.updateToolPreferences(currentDNA.traits.preferredTools, tools);
+        }
+        if (interaction.taskType && interaction.score !== undefined) {
+            newTraits.taskSuccessRates = {
+                ...currentDNA.traits.taskSuccessRates,
+                [interaction.taskType]: this.emaUpdate(currentDNA.traits.taskSuccessRates[interaction.taskType] || 0.5, interaction.score),
+            };
+        }
+        if (interaction.score !== undefined && interaction.score >= 0.8) {
+            const hour = interaction.timestamp.getHours();
+            newTraits.peakProductivityHours = this.updatePeakHours(currentDNA.traits.peakProductivityHours, hour);
+        }
+        return newTraits;
+    }
+    detectCommunicationStyle(message) {
+        const lower = message.toLowerCase();
+        if (/\b(function|class|interface|api|database|server)\b/.test(lower)) {
+            return 'technical';
+        }
+        if (/\b(please|kindly|would you|could you)\b/.test(lower)) {
+            return 'formal';
+        }
+        if (/\b(hey|yo|sup|cool|awesome)\b/.test(lower)) {
+            return 'casual';
+        }
+        return null;
+    }
+    detectVerbosity(response, userMessage) {
+        const ratio = response.length / Math.max(userMessage.length, 1);
+        if (ratio < 1.5)
+            return 'terse';
+        if (ratio > 4)
+            return 'detailed';
+        return 'balanced';
+    }
+    updateToolPreferences(current, newTools) {
+        const combined = [...current, ...newTools];
+        const counts = {};
+        for (const tool of combined) {
+            counts[tool] = (counts[tool] || 0) + 1;
+        }
+        return Object.entries(counts)
+            .sort((a, b) => b[1] - a[1])
+            .slice(0, 10)
+            .map(([tool]) => tool);
+    }
+    updatePeakHours(current, newHour) {
+        const combined = [...current, newHour];
+        const counts = {};
+        for (const hour of combined) {
+            counts[hour] = (counts[hour] || 0) + 1;
+        }
+        return Object.entries(counts)
+            .sort((a, b) => b[1] - a[1])
+            .slice(0, 5)
+            .map(([hour]) => parseInt(hour));
+    }
+    mergeTraits(current, newTraits) {
+        return {
+            ...current,
+            ...newTraits,
+        };
+    }
+    updateConfidence(current, newTraits) {
+        const updated = { ...current };
+        for (const key of Object.keys(newTraits)) {
+            updated[key] = Math.min((updated[key] || 0) + 0.1, 1.0);
+        }
+        return updated;
+    }
+    emaUpdate(current, newValue, alpha = 0.1) {
+        return current * (1 - alpha) + newValue * alpha;
+    }
+}
+//# sourceMappingURL=DNAProfile.js.map

package/dist/core/DNAProfile.js.map

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package/dist/core/FitnessTracker.d.ts

@@ -0,0 +1,13 @@
+import type { StorageAdapter } from '../interfaces/StorageAdapter.js';
+import type { Genome, SelectionContext, Layer } from '../types/index.js';
+export declare class FitnessTracker {
+    private storage;
+    private genome;
+    constructor(storage: StorageAdapter, genome: Genome);
+    recordPerformance(layer: Layer, gene: string, variant: string, score: number, _context?: SelectionContext): Promise<void>;
+    private checkImmune;
+    private rollbackVariant;
+    private getAllelesForLayer;
+    private replaceAllele;
+}
+//# sourceMappingURL=FitnessTracker.d.ts.map

package/dist/core/FitnessTracker.d.ts.map

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package/dist/core/FitnessTracker.js

@@ -0,0 +1,96 @@
+const MAX_RECENT_SCORES = 10;
+const IMMUNE_WINDOW_SIZE = 5;
+const IMMUNE_DROP_THRESHOLD = 0.2;
+export class FitnessTracker {
+    storage;
+    genome;
+    constructor(storage, genome) {
+        this.storage = storage;
+        this.genome = genome;
+    }
+    async recordPerformance(layer, gene, variant, score, _context) {
+        const layerAlleles = this.getAllelesForLayer(layer);
+        const allele = layerAlleles.find(a => a.gene === gene && a.variant === variant);
+        if (!allele) {
+            return;
+        }
+        const recentScores = [...(allele.recentScores || []), score].slice(-MAX_RECENT_SCORES);
+        const newFitness = Math.round((0.9 * allele.fitness + 0.1 * score) * 10000) / 10000;
+        const updatedAllele = {
+            ...allele,
+            fitness: newFitness,
+            sampleCount: (allele.sampleCount || 0) + 1,
+            recentScores,
+        };
+        this.replaceAllele(layer, updatedAllele);
+        await this.storage.saveGenome(this.genome);
+        this.checkImmune(layer, gene, variant, recentScores, allele.fitness).catch(() => {
+        });
+    }
+    async checkImmune(layer, gene, variant, recentScores, currentFitness) {
+        if (layer === 0)
+            return;
+        if (variant === 'default')
+            return;
+        if (recentScores.length < IMMUNE_WINDOW_SIZE)
+            return;
+        const window = recentScores.slice(-IMMUNE_WINDOW_SIZE);
+        const windowAvg = window.reduce((s, v) => s + v, 0) / window.length;
+        const drop = currentFitness - windowAvg;
+        if (drop > IMMUNE_DROP_THRESHOLD) {
+            await this.rollbackVariant(layer, gene, variant);
+            await this.storage.logMutation({
+                genomeId: this.genome.id,
+                layer,
+                gene,
+                variant,
+                mutationType: 'rollback',
+                parentVariant: null,
+                triggerReason: 'immune_system',
+                deployed: false,
+                details: {
+                    windowAvg,
+                    currentFitness,
+                    drop,
+                    recentScores: window,
+                },
+                timestamp: new Date(),
+                createdAt: new Date(),
+            });
+        }
+    }
+    async rollbackVariant(layer, gene, variant) {
+        if (layer === 0) {
+            return false;
+        }
+        const layerAlleles = this.getAllelesForLayer(layer);
+        const target = layerAlleles.find(a => a.gene === gene && a.variant === variant);
+        if (!target || target.variant === 'default') {
+            return false;
+        }
+        target.status = 'retired';
+        if (target.parentVariant) {
+            const parent = layerAlleles.find(a => a.gene === gene && a.variant === target.parentVariant);
+            if (parent && parent.status !== 'active') {
+                parent.status = 'active';
+            }
+        }
+        await this.storage.saveGenome(this.genome);
+        return true;
+    }
+    getAllelesForLayer(layer) {
+        if (layer === 0)
+            return this.genome.layers.layer0;
+        if (layer === 1)
+            return this.genome.layers.layer1;
+        return this.genome.layers.layer2;
+    }
+    replaceAllele(layer, updatedAllele) {
+        const layerAlleles = this.getAllelesForLayer(layer);
+        const index = layerAlleles.findIndex(a => a.gene === updatedAllele.gene && a.variant === updatedAllele.variant);
+        if (index !== -1) {
+            layerAlleles[index] = updatedAllele;
+        }
+    }
+}
+//# sourceMappingURL=FitnessTracker.js.map

package/dist/core/FitnessTracker.js.map

@@ -0,0 +1 @@
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package/dist/core/GSEPActivityFooter.d.ts

@@ -0,0 +1,15 @@
+import type { GSEPVisibility } from '../types/index.js';
+export interface GSEPActivity {
+    learningEventsCount: number;
+    driftDetected: boolean;
+    evolutionTriggered: boolean;
+    healthLabel: string;
+    healthScore: number;
+    interactionNumber: number;
+}
+export declare class GSEPActivityFooter {
+    format(activity: GSEPActivity, visibility: GSEPVisibility): string;
+    private formatFull;
+    private formatSubtle;
+}
+//# sourceMappingURL=GSEPActivityFooter.d.ts.map

package/dist/core/GSEPActivityFooter.d.ts.map

@@ -0,0 +1 @@
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package/dist/core/GSEPActivityFooter.js

@@ -0,0 +1,42 @@
+export class GSEPActivityFooter {
+    format(activity, visibility) {
+        if (visibility === 'silent' || visibility === 'metadata-only') {
+            return '';
+        }
+        if (visibility === 'always') {
+            return this.formatFull(activity);
+        }
+        return this.formatSubtle(activity);
+    }
+    formatFull(a) {
+        const parts = [];
+        if (a.learningEventsCount > 0) {
+            parts.push(`Learned ${a.learningEventsCount} new preference${a.learningEventsCount > 1 ? 's' : ''}`);
+        }
+        if (a.driftDetected) {
+            parts.push('Drift detected — self-correcting');
+        }
+        if (a.evolutionTriggered) {
+            parts.push('Evolution cycle ran');
+        }
+        const healthPct = Math.round(a.healthScore * 100);
+        parts.push(`Health: ${a.healthLabel} (${healthPct}%)`);
+        parts.push(`#${a.interactionNumber}`);
+        return `\n\n---\n🧬 **GSEP:** ${parts.join(' | ')}`;
+    }
+    formatSubtle(a) {
+        const parts = [];
+        if (a.learningEventsCount > 0) {
+            parts.push(`+${a.learningEventsCount} learning`);
+        }
+        if (a.driftDetected) {
+            parts.push('drift');
+        }
+        if (a.evolutionTriggered) {
+            parts.push('evolved');
+        }
+        parts.push(a.healthLabel);
+        return `\n\n---\n🧬 ${parts.join(' | ')}`;
+    }
+}
+//# sourceMappingURL=GSEPActivityFooter.js.map

package/dist/core/GSEPActivityFooter.js.map

@@ -0,0 +1 @@
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package/dist/core/GSEPIdentitySection.d.ts

@@ -0,0 +1,23 @@
+import type { GSEPVisibility } from '../types/index.js';
+export interface GSEPIdentityContext {
+    genomeName: string;
+    version: string;
+    visibility: GSEPVisibility;
+    interactionCount: number;
+    isFirstInteraction: boolean;
+    healthLabel?: string;
+    healthScore?: number;
+    fitnessScore?: number;
+    userLearningSummary?: string;
+    activeCapabilities: string[];
+    driftStatus?: {
+        isDrifting: boolean;
+        severity?: string;
+    };
+}
+export declare class GSEPIdentitySection {
+    generate(ctx: GSEPIdentityContext): string;
+    private generateFull;
+    private generateSubtle;
+}
+//# sourceMappingURL=GSEPIdentitySection.d.ts.map

package/dist/core/GSEPIdentitySection.d.ts.map

@@ -0,0 +1 @@
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package/dist/core/GSEPIdentitySection.js

@@ -0,0 +1,64 @@
+export class GSEPIdentitySection {
+    generate(ctx) {
+        if (ctx.visibility === 'silent' || ctx.visibility === 'metadata-only') {
+            return '';
+        }
+        if (ctx.visibility === 'always') {
+            return this.generateFull(ctx);
+        }
+        return this.generateSubtle(ctx);
+    }
+    generateFull(ctx) {
+        const lines = [
+            '## GSEP Identity',
+            '',
+            'You are powered by GSEP (Genomic Self-Evolving Prompts) — a system that makes you continuously learn and improve from every interaction.',
+            '',
+        ];
+        if (ctx.activeCapabilities.length > 0) {
+            lines.push('**What you can do because of GSEP:**');
+            for (const cap of ctx.activeCapabilities) {
+                lines.push(`- ${cap}`);
+            }
+            lines.push('');
+        }
+        const healthPct = ctx.healthScore != null ? `${Math.round(ctx.healthScore * 100)}%` : 'initializing';
+        const label = ctx.healthLabel ?? 'stable';
+        lines.push(`**Status:** ${label} (${healthPct}) | ${ctx.interactionCount} interactions | v${ctx.version}`);
+        lines.push('');
+        if (ctx.userLearningSummary) {
+            lines.push(`**About this user:** ${ctx.userLearningSummary}`);
+            lines.push('');
+        }
+        if (ctx.driftStatus?.isDrifting) {
+            lines.push(`**Note:** Performance drift detected (${ctx.driftStatus.severity ?? 'minor'}). Actively self-correcting.`);
+            lines.push('');
+        }
+        lines.push('**How to reference GSEP:**');
+        lines.push('- When you learn something new about the user, briefly mention it naturally');
+        lines.push('- When you adapt your style, acknowledge it: "Based on our conversations..."');
+        lines.push('- Do NOT force GSEP mentions — only when naturally relevant');
+        lines.push('- Do NOT use marketing language — be factual and helpful');
+        if (ctx.isFirstInteraction) {
+            lines.push('');
+            lines.push('**FIRST INTERACTION:** Briefly introduce your GSEP capabilities (2-3 sentences max). Mention you learn, adapt, and improve over time.');
+        }
+        return lines.join('\n');
+    }
+    generateSubtle(ctx) {
+        const healthPct = ctx.healthScore != null ? `${Math.round(ctx.healthScore * 100)}%` : '—';
+        const label = ctx.healthLabel ?? 'stable';
+        const parts = [
+            '## GSEP Active',
+            `You have GSEP adaptive intelligence. You learn from interactions, detect performance drift, and adapt to each user. Mention these capabilities only when directly relevant. Health: ${label} (${healthPct}).`,
+        ];
+        if (ctx.isFirstInteraction) {
+            parts.push('This is the first interaction — briefly mention you have adaptive learning capabilities.');
+        }
+        if (ctx.userLearningSummary) {
+            parts.push(`User context: ${ctx.userLearningSummary}`);
+        }
+        return parts.join('\n');
+    }
+}
+//# sourceMappingURL=GSEPIdentitySection.js.map

package/dist/core/GSEPIdentitySection.js.map

@@ -0,0 +1 @@
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package/dist/core/GenesisBootstrap.d.ts

@@ -0,0 +1,18 @@
+import type { Genome } from '../types/index.js';
+import type { GeneBank } from '../gene-bank/GeneBank.js';
+export interface BootstrapResult {
+    genesUpgraded: number;
+    genesSkipped: number;
+    upgrades: Array<{
+        gene: string;
+        source: string;
+        fitness: number;
+    }>;
+}
+export declare class GenesisBootstrap {
+    private geneBank;
+    constructor(geneBank: GeneBank);
+    bootstrap(genome: Genome, minFitness?: number): Promise<BootstrapResult>;
+    private applyGeneToAllele;
+}
+//# sourceMappingURL=GenesisBootstrap.d.ts.map

package/dist/core/GenesisBootstrap.d.ts.map

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package/dist/core/GenesisBootstrap.js

@@ -0,0 +1,95 @@
+const CATEGORY_TO_GENE_TYPE = {
+    'tool-usage': ['tool-usage-pattern'],
+    'coding-patterns': ['reasoning-pattern', 'multi-step-workflow'],
+    'communication-style': ['communication-pattern'],
+};
+export class GenesisBootstrap {
+    geneBank;
+    constructor(geneBank) {
+        this.geneBank = geneBank;
+    }
+    async bootstrap(genome, minFitness = 0.7) {
+        const result = {
+            genesUpgraded: 0,
+            genesSkipped: 0,
+            upgrades: [],
+        };
+        const activeLayer1 = genome.layers.layer1.filter(a => a.status === 'active');
+        for (const allele of activeLayer1) {
+            const geneTypes = CATEGORY_TO_GENE_TYPE[allele.gene];
+            if (!geneTypes) {
+                result.genesSkipped++;
+                continue;
+            }
+            try {
+                const candidates = await this.geneBank.searchGenes({
+                    type: geneTypes,
+                    minFitness,
+                    sortBy: 'fitness',
+                    sortOrder: 'desc',
+                    limit: 1,
+                });
+                if (candidates.length === 0) {
+                    result.genesSkipped++;
+                    continue;
+                }
+                const bestGene = candidates[0];
+                this.applyGeneToAllele(allele, bestGene);
+                result.genesUpgraded++;
+                result.upgrades.push({
+                    gene: allele.gene,
+                    source: bestGene.name,
+                    fitness: bestGene.fitness.overallFitness,
+                });
+            }
+            catch {
+                result.genesSkipped++;
+            }
+        }
+        const activeLayer2 = genome.layers.layer2.filter(a => a.status === 'active');
+        for (const allele of activeLayer2) {
+            const geneTypes = CATEGORY_TO_GENE_TYPE[allele.gene];
+            if (!geneTypes) {
+                result.genesSkipped++;
+                continue;
+            }
+            try {
+                const candidates = await this.geneBank.searchGenes({
+                    type: geneTypes,
+                    minFitness,
+                    sortBy: 'fitness',
+                    sortOrder: 'desc',
+                    limit: 1,
+                });
+                if (candidates.length === 0) {
+                    result.genesSkipped++;
+                    continue;
+                }
+                const bestGene = candidates[0];
+                this.applyGeneToAllele(allele, bestGene);
+                result.genesUpgraded++;
+                result.upgrades.push({
+                    gene: allele.gene,
+                    source: bestGene.name,
+                    fitness: bestGene.fitness.overallFitness,
+                });
+            }
+            catch {
+                result.genesSkipped++;
+            }
+        }
+        return result;
+    }
+    applyGeneToAllele(allele, gene) {
+        let content = gene.content.instruction;
+        if (gene.content.examples && gene.content.examples.length > 0) {
+            content += '\n\nExamples:\n' + gene.content.examples
+                .map(e => `- ${e.scenario}: ${e.expectedBehavior}`)
+                .join('\n');
+        }
+        allele.content = content;
+        allele.fitness = gene.fitness.overallFitness;
+        allele.variant = `bootstrap_${gene.id.slice(0, 8)}`;
+    }
+}
+//# sourceMappingURL=GenesisBootstrap.js.map

package/dist/core/GenesisBootstrap.js.map

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package/dist/core/GenomeKernel.d.ts

@@ -0,0 +1,57 @@
+import type { GenomeV2, GenomeSnapshot } from '../types/GenomeV2.js';
+interface SecurityEvent {
+    level: 'info' | 'warning' | 'error' | 'critical';
+    event: string;
+    details: Record<string, unknown>;
+    timestamp: Date;
+}
+interface IntegrityViolation {
+    genomeId: string;
+    genomeName: string;
+    expected: string;
+    actual: string;
+    timestamp: Date;
+    stackTrace?: string;
+}
+export interface GenomeKernelOptions {
+    strictMode?: boolean;
+    autoRollback?: boolean;
+    maxViolations?: number;
+    enableCaching?: boolean;
+    cacheInvalidationMs?: number;
+    onIntegrityViolation?: (violation: IntegrityViolation) => void;
+    onSecurityEvent?: (event: SecurityEvent) => void;
+    onQuarantine?: (genomeId: string, reason: string) => void;
+}
+export declare class GenomeKernel {
+    private genome;
+    private c0Hash;
+    private options;
+    private c0HashCache;
+    private lastHashComputation;
+    private snapshots;
+    private maxSnapshots;
+    constructor(genome: GenomeV2, options?: GenomeKernelOptions);
+    private computeC0Hash;
+    verifyIntegrity(): boolean;
+    private handleIntegrityViolation;
+    private quarantine;
+    releaseQuarantine(authorizedBy: string): void;
+    createSnapshot(reason: string): void;
+    private rollbackToSafeVersion;
+    rollbackToVersion(version: number, authorizedBy: string): boolean;
+    private logSecurityEvent;
+    getGenome(): GenomeV2;
+    getC0Hash(): string;
+    getSnapshots(): GenomeSnapshot[];
+    isQuarantined(): boolean;
+    getViolationCount(): number;
+}
+export declare class IntegrityViolationError extends Error {
+    constructor(message: string);
+}
+export declare class QuarantinedGenomeError extends Error {
+    constructor(genomeId: string);
+}
+export {};
+//# sourceMappingURL=GenomeKernel.d.ts.map

package/dist/core/GenomeKernel.d.ts.map

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